Query 018336
Match_columns 358
No_of_seqs 210 out of 2572
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:09:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 5.9E-40 1.3E-44 308.7 29.5 307 27-356 228-567 (571)
2 PHA02713 hypothetical protein; 100.0 1.1E-36 2.4E-41 287.8 25.3 229 103-340 273-540 (557)
3 PHA03098 kelch-like protein; P 100.0 3.3E-34 7.1E-39 273.0 28.5 229 76-344 293-523 (534)
4 PHA02790 Kelch-like protein; P 100.0 1.5E-33 3.2E-38 263.0 27.5 207 76-340 270-477 (480)
5 PLN02153 epithiospecifier prot 100.0 5.6E-33 1.2E-37 249.6 30.1 233 76-340 31-291 (341)
6 PLN02193 nitrile-specifier pro 100.0 2.3E-32 5E-37 254.4 27.6 228 76-340 174-417 (470)
7 KOG4441 Proteins containing BT 100.0 5.1E-33 1.1E-37 261.8 23.4 207 135-349 282-516 (571)
8 TIGR03548 mutarot_permut cycli 100.0 5.4E-32 1.2E-36 241.6 28.5 243 76-349 12-297 (323)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 7.4E-31 1.6E-35 236.7 28.1 237 76-349 16-315 (346)
10 PHA02713 hypothetical protein; 100.0 7.2E-32 1.6E-36 255.2 19.3 227 52-299 279-543 (557)
11 PHA03098 kelch-like protein; P 100.0 1.3E-30 2.8E-35 248.4 25.0 212 103-349 265-481 (534)
12 PLN02153 epithiospecifier prot 100.0 1.7E-29 3.8E-34 227.0 27.6 213 109-349 4-245 (341)
13 PLN02193 nitrile-specifier pro 100.0 2.8E-29 6.1E-34 233.7 29.6 217 102-349 137-371 (470)
14 PRK14131 N-acetylneuraminic ac 100.0 1.4E-29 2.9E-34 230.1 26.5 238 76-349 37-337 (376)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 4.9E-29 1.1E-33 224.9 21.6 246 53-331 39-344 (346)
16 KOG4693 Uncharacterized conser 100.0 3.2E-29 6.9E-34 202.6 18.0 224 128-355 14-300 (392)
17 PHA02790 Kelch-like protein; P 100.0 1.3E-28 2.9E-33 229.8 25.0 173 133-349 267-440 (480)
18 PRK14131 N-acetylneuraminic ac 100.0 5.7E-29 1.2E-33 226.1 21.7 253 54-339 61-374 (376)
19 TIGR03548 mutarot_permut cycli 100.0 5.3E-28 1.1E-32 215.9 23.8 225 56-323 52-316 (323)
20 KOG4693 Uncharacterized conser 99.9 1.9E-25 4E-30 180.9 16.0 208 77-320 88-312 (392)
21 KOG0379 Kelch repeat-containin 99.9 6.8E-24 1.5E-28 197.2 26.0 231 76-340 69-308 (482)
22 KOG1230 Protein containing rep 99.9 3.7E-24 7.9E-29 183.1 16.0 273 28-340 34-347 (521)
23 KOG0379 Kelch repeat-containin 99.9 1.2E-22 2.7E-27 188.7 22.4 200 128-352 61-272 (482)
24 KOG1230 Protein containing rep 99.9 4.2E-22 9.1E-27 170.6 19.1 190 137-349 78-300 (521)
25 KOG4152 Host cell transcriptio 99.9 8.8E-21 1.9E-25 166.6 15.8 237 109-349 14-326 (830)
26 KOG4152 Host cell transcriptio 99.8 8.7E-19 1.9E-23 154.2 14.1 238 76-333 41-363 (830)
27 COG3055 Uncharacterized protei 99.7 2.2E-16 4.8E-21 133.9 17.6 227 103-335 59-376 (381)
28 COG3055 Uncharacterized protei 99.6 8.1E-15 1.8E-19 124.5 11.3 222 116-347 29-270 (381)
29 KOG2437 Muskelin [Signal trans 99.4 1.8E-13 3.8E-18 120.8 4.5 210 109-334 236-472 (723)
30 PF13964 Kelch_6: Kelch motif 99.3 1.1E-11 2.3E-16 77.9 6.5 50 176-225 1-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.2 3.3E-11 7.2E-16 75.6 6.7 49 128-177 2-50 (50)
32 PF01344 Kelch_1: Kelch motif; 99.1 1.4E-10 3E-15 71.8 4.3 47 176-222 1-47 (47)
33 KOG2437 Muskelin [Signal trans 99.0 5.7E-10 1.2E-14 99.0 7.0 158 162-340 236-419 (723)
34 PF13415 Kelch_3: Galactose ox 99.0 1.4E-09 3.1E-14 67.7 6.2 49 137-185 1-49 (49)
35 PF01344 Kelch_1: Kelch motif; 99.0 1.8E-09 3.9E-14 66.8 5.6 47 224-272 1-47 (47)
36 TIGR01640 F_box_assoc_1 F-box 99.0 1.4E-07 3E-12 80.1 19.2 173 135-343 3-188 (230)
37 PF07646 Kelch_2: Kelch motif; 98.9 4.6E-09 9.9E-14 65.4 6.3 47 176-222 1-49 (49)
38 PF13415 Kelch_3: Galactose ox 98.9 6.1E-09 1.3E-13 64.9 5.9 47 186-232 1-48 (49)
39 PF13418 Kelch_4: Galactose ox 98.9 2.5E-09 5.4E-14 66.7 4.1 47 176-222 1-48 (49)
40 TIGR01640 F_box_assoc_1 F-box 98.9 1.7E-06 3.7E-11 73.5 22.4 204 103-335 15-230 (230)
41 PF07646 Kelch_2: Kelch motif; 98.8 1.1E-08 2.3E-13 63.8 6.0 49 224-272 1-49 (49)
42 PF12937 F-box-like: F-box-lik 98.8 9.3E-09 2E-13 63.4 3.7 42 27-68 1-42 (47)
43 smart00612 Kelch Kelch domain. 98.7 2.3E-08 5E-13 61.7 4.9 47 188-235 1-47 (47)
44 PF13418 Kelch_4: Galactose ox 98.7 1.8E-08 3.8E-13 62.9 4.2 43 301-343 2-48 (49)
45 PLN03215 ascorbic acid mannose 98.7 1.4E-05 3.1E-10 71.1 23.6 38 26-63 3-41 (373)
46 smart00612 Kelch Kelch domain. 98.7 2.9E-08 6.4E-13 61.2 4.9 47 139-187 1-47 (47)
47 PF07250 Glyoxal_oxid_N: Glyox 98.6 1.8E-06 3.9E-11 72.5 15.3 162 154-354 45-220 (243)
48 PLN02772 guanylate kinase 98.6 4.4E-07 9.4E-12 80.9 10.5 83 175-262 23-109 (398)
49 PF07250 Glyoxal_oxid_N: Glyox 98.5 4.1E-06 8.9E-11 70.3 14.6 149 103-274 47-211 (243)
50 PF00646 F-box: F-box domain; 98.5 8.2E-08 1.8E-12 59.5 1.8 44 27-70 3-46 (48)
51 smart00256 FBOX A Receptor for 98.4 2.5E-07 5.4E-12 55.2 3.3 39 30-68 1-39 (41)
52 PF13854 Kelch_5: Kelch motif 98.4 9.5E-07 2.1E-11 52.8 5.5 40 173-212 1-41 (42)
53 PLN02772 guanylate kinase 98.3 5.4E-06 1.2E-10 74.0 10.3 86 223-334 23-109 (398)
54 PF13854 Kelch_5: Kelch motif 98.3 2.3E-06 5E-11 51.1 5.5 41 221-262 1-41 (42)
55 KOG0281 Beta-TrCP (transducin 98.0 4.4E-05 9.4E-10 65.5 9.6 43 27-69 75-121 (499)
56 PF07893 DUF1668: Protein of u 97.9 0.00095 2.1E-08 60.0 17.2 135 136-293 75-234 (342)
57 PF03089 RAG2: Recombination a 97.6 0.016 3.5E-07 49.0 17.3 107 139-246 39-176 (337)
58 PF07893 DUF1668: Protein of u 97.6 0.0066 1.4E-07 54.6 16.6 130 185-344 75-221 (342)
59 PF13360 PQQ_2: PQQ-like domai 97.3 0.075 1.6E-06 45.0 22.4 171 102-338 46-237 (238)
60 PRK11138 outer membrane biogen 97.3 0.14 3.1E-06 47.2 22.8 202 103-340 80-321 (394)
61 PRK11138 outer membrane biogen 97.2 0.15 3.1E-06 47.1 21.4 134 103-267 131-282 (394)
62 PF12768 Rax2: Cortical protei 97.2 0.011 2.3E-07 51.3 12.7 122 141-270 2-130 (281)
63 PF08450 SGL: SMP-30/Gluconola 97.0 0.075 1.6E-06 45.5 16.7 188 102-343 22-223 (246)
64 PF13360 PQQ_2: PQQ-like domai 97.0 0.19 4E-06 42.5 22.6 182 103-339 4-199 (238)
65 KOG2120 SCF ubiquitin ligase, 96.9 0.00051 1.1E-08 58.5 2.4 43 25-67 96-138 (419)
66 PF03089 RAG2: Recombination a 96.9 0.22 4.7E-06 42.4 19.0 127 118-248 82-233 (337)
67 TIGR03300 assembly_YfgL outer 96.8 0.39 8.5E-06 43.9 21.7 170 103-339 116-305 (377)
68 PF12768 Rax2: Cortical protei 96.5 0.11 2.3E-06 45.2 13.3 78 190-270 2-81 (281)
69 KOG2997 F-box protein FBX9 [Ge 96.5 0.0025 5.3E-08 54.6 3.2 45 27-71 107-156 (366)
70 PF05096 Glu_cyclase_2: Glutam 96.4 0.49 1.1E-05 40.4 16.3 110 132-263 49-159 (264)
71 TIGR03300 assembly_YfgL outer 96.3 0.91 2E-05 41.5 23.1 180 103-340 76-268 (377)
72 PF08268 FBA_3: F-box associat 96.1 0.073 1.6E-06 40.5 9.6 89 231-346 2-95 (129)
73 PRK04792 tolB translocation pr 95.6 2.1 4.5E-05 40.3 20.3 104 155-269 242-346 (448)
74 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.4 2.8 6.1E-05 40.3 20.4 119 133-269 65-199 (527)
75 cd00094 HX Hemopexin-like repe 95.3 1.4 2.9E-05 36.2 16.8 153 132-336 11-178 (194)
76 PF05096 Glu_cyclase_2: Glutam 95.2 0.65 1.4E-05 39.7 12.5 110 181-335 49-159 (264)
77 KOG2055 WD40 repeat protein [G 95.2 1.1 2.4E-05 40.8 14.1 135 102-263 237-376 (514)
78 TIGR02800 propeller_TolB tol-p 95.1 2.8 6E-05 38.8 20.1 147 155-340 214-361 (417)
79 KOG2055 WD40 repeat protein [G 95.1 0.44 9.5E-06 43.2 11.4 147 138-336 225-377 (514)
80 PF02191 OLF: Olfactomedin-lik 94.9 1.6 3.6E-05 37.3 14.3 160 137-340 30-210 (250)
81 COG4257 Vgb Streptogramin lyas 94.9 2.1 4.7E-05 36.6 17.1 209 103-345 84-317 (353)
82 KOG0274 Cdc4 and related F-box 94.8 3.4 7.5E-05 39.6 17.6 43 26-68 107-149 (537)
83 PRK04792 tolB translocation pr 94.8 3.7 8.1E-05 38.6 21.4 149 102-270 242-391 (448)
84 PF08450 SGL: SMP-30/Gluconola 94.5 2.2 4.7E-05 36.4 14.4 113 137-269 11-130 (246)
85 PF08268 FBA_3: F-box associat 93.9 0.88 1.9E-05 34.5 9.7 84 183-270 2-89 (129)
86 PRK00178 tolB translocation pr 93.8 5.6 0.00012 37.1 21.8 147 103-270 224-372 (430)
87 PF09910 DUF2139: Uncharacteri 93.5 4.6 9.9E-05 35.0 18.3 181 116-333 27-230 (339)
88 PF10282 Lactonase: Lactonase, 93.4 4.8 0.0001 36.4 15.2 192 101-340 14-231 (345)
89 PRK05137 tolB translocation pr 93.4 7 0.00015 36.6 20.5 104 155-269 226-330 (435)
90 PF03178 CPSF_A: CPSF A subuni 93.3 4.4 9.5E-05 36.2 14.6 101 155-270 62-168 (321)
91 PRK04922 tolB translocation pr 93.2 7.3 0.00016 36.4 20.1 104 155-269 228-332 (433)
92 smart00284 OLF Olfactomedin-li 92.9 5.5 0.00012 34.1 13.6 144 186-355 34-186 (255)
93 PRK04043 tolB translocation pr 92.9 8.1 0.00018 36.0 16.6 105 155-270 213-318 (419)
94 PF02191 OLF: Olfactomedin-lik 92.6 4.2 9E-05 34.8 12.6 143 186-356 30-182 (250)
95 PRK04922 tolB translocation pr 92.6 9 0.0002 35.8 21.7 147 103-270 229-377 (433)
96 PRK05137 tolB translocation pr 92.4 9.5 0.00021 35.7 21.9 147 102-269 226-374 (435)
97 cd00216 PQQ_DH Dehydrogenases 92.3 11 0.00023 36.0 23.3 106 103-217 72-191 (488)
98 TIGR03866 PQQ_ABC_repeats PQQ- 92.3 6.9 0.00015 33.8 14.9 100 139-264 2-106 (300)
99 PRK00178 tolB translocation pr 92.2 10 0.00022 35.4 23.2 104 155-269 223-327 (430)
100 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.2 12 0.00025 36.2 23.3 106 103-217 80-197 (527)
101 TIGR03866 PQQ_ABC_repeats PQQ- 92.0 7.4 0.00016 33.6 19.8 133 103-264 12-148 (300)
102 smart00284 OLF Olfactomedin-li 91.9 7.4 0.00016 33.3 15.4 76 137-222 34-113 (255)
103 KOG0289 mRNA splicing factor [ 91.7 5.2 0.00011 36.4 12.2 124 179-346 350-476 (506)
104 PRK03629 tolB translocation pr 91.4 12 0.00027 34.9 21.2 148 155-340 223-370 (429)
105 PF07734 FBA_1: F-box associat 91.3 2.3 4.9E-05 33.8 9.2 85 231-340 2-90 (164)
106 PF10282 Lactonase: Lactonase, 91.1 11 0.00025 33.9 15.1 116 137-270 203-333 (345)
107 cd00216 PQQ_DH Dehydrogenases 90.9 15 0.00032 35.0 20.1 122 132-268 56-192 (488)
108 KOG0316 Conserved WD40 repeat- 90.8 8.7 0.00019 32.2 17.1 203 103-336 40-260 (307)
109 PF06433 Me-amine-dh_H: Methyl 90.6 6 0.00013 35.2 11.6 63 101-169 66-132 (342)
110 KOG0310 Conserved WD40 repeat- 90.5 13 0.00028 34.3 13.7 139 102-266 48-190 (487)
111 TIGR02800 propeller_TolB tol-p 90.3 15 0.00032 34.0 21.4 149 102-270 214-363 (417)
112 TIGR03074 PQQ_membr_DH membran 89.2 27 0.00058 35.3 21.2 121 132-268 189-353 (764)
113 PLN02919 haloacid dehalogenase 88.2 38 0.00083 35.8 21.5 161 137-336 694-891 (1057)
114 PRK13684 Ycf48-like protein; P 88.1 19 0.00042 32.3 18.8 90 137-242 142-233 (334)
115 PRK02889 tolB translocation pr 88.1 23 0.00049 33.1 20.7 104 155-269 220-324 (427)
116 PRK04043 tolB translocation pr 87.5 24 0.00053 32.8 24.0 153 102-271 213-367 (419)
117 PRK03629 tolB translocation pr 87.5 25 0.00054 32.9 22.2 148 103-270 224-372 (429)
118 PRK11028 6-phosphogluconolacto 86.4 24 0.00051 31.5 19.7 137 103-262 13-157 (330)
119 COG4257 Vgb Streptogramin lyas 86.1 21 0.00046 30.8 12.4 60 203-271 254-315 (353)
120 PF14870 PSII_BNR: Photosynthe 85.4 26 0.00056 31.0 17.7 202 104-340 39-268 (302)
121 PF06433 Me-amine-dh_H: Methyl 85.2 22 0.00047 31.8 11.7 37 73-122 102-138 (342)
122 COG4946 Uncharacterized protei 84.4 25 0.00054 32.7 11.8 103 202-345 205-309 (668)
123 PTZ00421 coronin; Provisional 83.8 41 0.0009 32.1 17.8 107 138-263 138-247 (493)
124 PF07734 FBA_1: F-box associat 83.1 21 0.00046 28.2 13.9 83 183-271 2-93 (164)
125 PLN00181 protein SPA1-RELATED; 82.9 59 0.0013 33.2 19.1 101 137-262 587-691 (793)
126 KOG1332 Vesicle coat complex C 82.5 28 0.00061 29.5 10.5 50 287-340 241-294 (299)
127 PF03178 CPSF_A: CPSF A subuni 81.0 32 0.00069 30.6 11.7 121 102-240 62-189 (321)
128 PTZ00420 coronin; Provisional 80.3 60 0.0013 31.6 17.1 104 139-262 139-249 (568)
129 KOG0310 Conserved WD40 repeat- 80.2 50 0.0011 30.7 16.7 104 135-263 120-227 (487)
130 KOG0291 WD40-repeat-containing 78.9 72 0.0016 31.7 17.5 142 154-340 329-473 (893)
131 PLN03215 ascorbic acid mannose 78.8 52 0.0011 30.0 14.8 97 111-222 189-305 (373)
132 COG2706 3-carboxymuconate cycl 78.2 50 0.0011 29.5 21.5 181 130-350 44-244 (346)
133 PF02897 Peptidase_S9_N: Proly 78.2 57 0.0012 30.1 16.8 149 155-340 252-411 (414)
134 COG2706 3-carboxymuconate cycl 77.8 51 0.0011 29.4 16.4 148 154-340 166-330 (346)
135 PRK01742 tolB translocation pr 77.8 61 0.0013 30.3 18.7 60 155-220 228-289 (429)
136 KOG3545 Olfactomedin and relat 77.2 44 0.00096 28.3 14.0 158 156-355 11-180 (249)
137 TIGR02658 TTQ_MADH_Hv methylam 76.5 59 0.0013 29.5 13.0 133 187-345 13-149 (352)
138 PRK02889 tolB translocation pr 76.1 68 0.0015 29.9 20.9 146 103-269 221-368 (427)
139 PF12217 End_beta_propel: Cata 75.9 50 0.0011 28.3 15.4 115 128-244 136-259 (367)
140 PRK11028 6-phosphogluconolacto 75.0 61 0.0013 28.8 20.0 93 103-212 58-157 (330)
141 PF02897 Peptidase_S9_N: Proly 75.0 70 0.0015 29.6 16.7 147 102-269 252-412 (414)
142 KOG0289 mRNA splicing factor [ 74.7 71 0.0015 29.5 12.1 116 102-236 369-487 (506)
143 cd00200 WD40 WD40 domain, foun 74.6 49 0.0011 27.6 16.1 104 137-264 20-126 (289)
144 cd00094 HX Hemopexin-like repe 74.0 47 0.001 27.1 16.3 98 138-264 63-178 (194)
145 PF14583 Pectate_lyase22: Olig 73.3 75 0.0016 29.1 11.6 225 102-340 60-335 (386)
146 COG1520 FOG: WD40-like repeat 73.1 74 0.0016 29.0 20.2 138 103-268 79-226 (370)
147 KOG1332 Vesicle coat complex C 72.4 50 0.0011 28.0 9.2 103 139-271 176-297 (299)
148 KOG0291 WD40-repeat-containing 71.7 1.1E+02 0.0024 30.4 16.7 55 104-169 416-472 (893)
149 PF13570 PQQ_3: PQQ-like domai 70.9 11 0.00023 21.6 3.9 25 305-334 16-40 (40)
150 COG0823 TolB Periplasmic compo 69.8 94 0.002 29.1 11.7 108 154-271 261-369 (425)
151 KOG0772 Uncharacterized conser 69.5 97 0.0021 29.4 11.2 41 294-334 404-446 (641)
152 PF12217 End_beta_propel: Cata 68.2 77 0.0017 27.2 14.2 162 130-320 77-259 (367)
153 PTZ00421 coronin; Provisional 66.7 1.2E+02 0.0027 29.0 16.4 62 187-264 138-201 (493)
154 KOG0278 Serine/threonine kinas 66.6 82 0.0018 26.9 9.4 51 186-244 235-288 (334)
155 KOG4341 F-box protein containi 64.6 5.7 0.00012 36.3 2.6 40 26-65 71-110 (483)
156 KOG2321 WD40 repeat protein [G 64.4 85 0.0018 30.1 10.0 62 186-264 145-208 (703)
157 KOG0316 Conserved WD40 repeat- 64.0 90 0.0019 26.4 13.2 111 137-271 28-141 (307)
158 KOG2321 WD40 repeat protein [G 63.8 63 0.0014 31.0 9.1 105 137-264 145-261 (703)
159 PLN02919 haloacid dehalogenase 62.5 2.2E+02 0.0048 30.4 22.5 172 137-340 635-840 (1057)
160 PRK13684 Ycf48-like protein; P 61.4 1.2E+02 0.0027 27.2 18.8 134 110-270 74-211 (334)
161 COG3386 Gluconolactonase [Carb 60.7 1.2E+02 0.0027 26.9 21.6 198 102-353 47-264 (307)
162 PF14870 PSII_BNR: Photosynthe 60.4 1.2E+02 0.0027 26.8 16.1 121 104-241 83-204 (302)
163 cd00200 WD40 WD40 domain, foun 60.0 99 0.0022 25.6 19.0 102 138-264 105-210 (289)
164 PRK10115 protease 2; Provision 59.7 2E+02 0.0043 29.0 15.7 123 133-271 275-404 (686)
165 PRK10115 protease 2; Provision 59.4 2E+02 0.0043 28.9 19.0 106 154-269 246-354 (686)
166 KOG2502 Tub family proteins [G 58.1 11 0.00025 33.3 3.2 39 25-63 43-89 (355)
167 COG1520 FOG: WD40-like repeat 57.6 1.5E+02 0.0033 26.9 17.1 111 134-269 65-181 (370)
168 PF03022 MRJP: Major royal jel 57.3 1.3E+02 0.0029 26.4 9.8 82 234-340 11-104 (287)
169 PLN00181 protein SPA1-RELATED; 56.3 2.4E+02 0.0052 28.9 15.7 89 156-263 556-650 (793)
170 TIGR03074 PQQ_membr_DH membran 56.3 2.4E+02 0.0052 28.8 25.4 35 183-218 313-353 (764)
171 PF09910 DUF2139: Uncharacteri 55.0 1.5E+02 0.0032 26.1 14.8 124 102-240 78-219 (339)
172 PF13013 F-box-like_2: F-box-l 53.9 20 0.00043 26.3 3.4 29 27-55 22-50 (109)
173 KOG0318 WD40 repeat stress pro 53.3 2.1E+02 0.0045 27.3 12.1 66 186-265 454-521 (603)
174 COG4880 Secreted protein conta 52.9 2E+02 0.0042 26.8 10.8 43 199-241 402-444 (603)
175 PLN00033 photosystem II stabil 51.6 2E+02 0.0044 26.6 19.2 29 307-340 335-363 (398)
176 KOG1036 Mitotic spindle checkp 51.5 1.7E+02 0.0037 25.7 11.9 89 156-262 36-125 (323)
177 KOG2048 WD40 repeat protein [G 51.0 2.5E+02 0.0055 27.6 11.0 115 185-340 392-512 (691)
178 PTZ00420 coronin; Provisional 50.8 2.5E+02 0.0054 27.5 15.0 60 188-264 139-200 (568)
179 COG5354 Uncharacterized protei 50.8 1.3E+02 0.0028 28.4 8.7 96 155-263 255-350 (561)
180 KOG0315 G-protein beta subunit 48.5 1.8E+02 0.0038 25.0 12.8 114 186-345 51-166 (311)
181 PF07433 DUF1513: Protein of u 46.7 2.1E+02 0.0045 25.4 19.9 125 131-264 8-149 (305)
182 smart00564 PQQ beta-propeller 46.7 45 0.00097 17.6 4.5 26 308-338 4-31 (33)
183 PF02239 Cytochrom_D1: Cytochr 45.9 2.4E+02 0.0052 25.8 11.3 92 154-264 15-111 (369)
184 KOG0263 Transcription initiati 45.9 2.8E+02 0.006 27.7 10.5 90 156-262 558-650 (707)
185 KOG4378 Nuclear protein COP1 [ 45.7 1.5E+02 0.0033 28.0 8.3 45 306-354 216-261 (673)
186 KOG0649 WD40 repeat protein [G 45.2 2E+02 0.0042 24.6 15.0 92 113-218 100-193 (325)
187 KOG0266 WD40 repeat-containing 45.0 2.7E+02 0.0059 26.2 15.3 96 155-266 225-323 (456)
188 PRK01742 tolB translocation pr 43.6 2.8E+02 0.006 25.9 19.7 138 103-269 229-369 (429)
189 KOG0266 WD40 repeat-containing 43.1 2.9E+02 0.0064 26.0 19.9 67 137-216 257-323 (456)
190 KOG0639 Transducin-like enhanc 43.0 3E+02 0.0066 26.2 10.5 96 134-244 473-572 (705)
191 KOG0286 G-protein beta subunit 43.0 2.3E+02 0.0051 24.9 17.7 126 103-246 78-210 (343)
192 KOG3926 F-box proteins [Amino 42.8 29 0.00063 29.7 3.2 42 24-65 199-241 (332)
193 COG3823 Glutamine cyclotransfe 42.5 2E+02 0.0044 24.0 11.2 100 132-244 50-150 (262)
194 PF15525 DUF4652: Domain of un 41.2 2E+02 0.0042 23.5 11.2 83 101-185 87-170 (200)
195 PF15525 DUF4652: Domain of un 40.6 2E+02 0.0044 23.4 11.9 78 149-226 82-163 (200)
196 KOG2048 WD40 repeat protein [G 39.5 3.9E+02 0.0084 26.4 19.3 54 102-166 47-101 (691)
197 COG0823 TolB Periplasmic compo 37.2 3.6E+02 0.0077 25.3 11.8 62 202-270 261-323 (425)
198 PF11768 DUF3312: Protein of u 37.1 3E+02 0.0064 26.6 9.1 93 153-264 234-332 (545)
199 KOG4649 PQQ (pyrrolo-quinoline 37.0 2.8E+02 0.0061 24.0 8.4 71 229-340 15-90 (354)
200 PF09372 PRANC: PRANC domain; 36.8 26 0.00057 24.8 1.9 25 25-49 70-94 (97)
201 KOG1036 Mitotic spindle checkp 36.4 3E+02 0.0066 24.3 13.2 91 102-213 75-165 (323)
202 PF08662 eIF2A: Eukaryotic tra 34.7 2.5E+02 0.0054 22.8 9.3 93 137-243 71-163 (194)
203 KOG1445 Tumor-specific antigen 32.4 1.8E+02 0.0039 28.5 6.9 57 203-263 742-800 (1012)
204 KOG0640 mRNA cleavage stimulat 31.8 3.7E+02 0.0081 23.9 8.5 84 154-244 237-326 (430)
205 KOG0318 WD40 repeat stress pro 31.0 4.9E+02 0.011 25.0 10.5 104 137-262 454-561 (603)
206 COG3823 Glutamine cyclotransfe 30.5 3.3E+02 0.0071 22.8 8.7 56 181-241 50-107 (262)
207 KOG3545 Olfactomedin and relat 30.3 3.5E+02 0.0076 23.1 12.6 163 137-343 30-212 (249)
208 KOG4649 PQQ (pyrrolo-quinoline 28.5 4E+02 0.0086 23.2 12.0 55 100-169 31-89 (354)
209 KOG0315 G-protein beta subunit 28.1 3.9E+02 0.0085 23.0 17.6 99 102-217 61-160 (311)
210 KOG0281 Beta-TrCP (transducin 27.5 2.9E+02 0.0063 24.9 6.9 91 155-263 340-430 (499)
211 PF03022 MRJP: Major royal jel 26.8 4.3E+02 0.0094 23.1 12.0 97 137-239 11-125 (287)
212 KOG2315 Predicted translation 25.3 5.9E+02 0.013 24.6 8.8 38 221-263 309-346 (566)
213 KOG0282 mRNA splicing factor [ 25.0 2.2E+02 0.0047 26.8 5.9 90 137-245 226-322 (503)
214 COG4946 Uncharacterized protei 24.9 6.1E+02 0.013 24.1 20.1 99 154-269 205-303 (668)
215 KOG0263 Transcription initiati 24.7 7.2E+02 0.016 24.9 10.6 24 306-333 626-649 (707)
216 KOG0285 Pleiotropic regulator 24.5 5.4E+02 0.012 23.4 15.3 32 305-340 365-397 (460)
217 PF01011 PQQ: PQQ enzyme repea 23.8 1.4E+02 0.0031 16.6 4.0 16 325-340 10-27 (38)
218 PF14066 DUF4256: Protein of u 23.6 1.1E+02 0.0024 24.0 3.3 17 285-301 120-136 (173)
219 KOG0646 WD40 repeat protein [G 23.6 6.2E+02 0.013 23.8 12.5 29 304-336 282-310 (476)
220 KOG0286 G-protein beta subunit 22.6 5.4E+02 0.012 22.7 13.6 52 156-213 78-129 (343)
221 PRK01029 tolB translocation pr 22.1 6.5E+02 0.014 23.5 13.9 117 137-268 292-410 (428)
222 TIGR02658 TTQ_MADH_Hv methylam 21.6 6.2E+02 0.013 23.1 22.7 86 73-169 53-142 (352)
223 KOG4499 Ca2+-binding protein R 20.8 5.4E+02 0.012 22.0 8.0 34 308-345 220-254 (310)
224 PF14781 BBS2_N: Ciliary BBSom 20.1 4.1E+02 0.0089 20.4 9.1 65 187-267 64-133 (136)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.9e-40 Score=308.65 Aligned_cols=307 Identities=23% Similarity=0.367 Sum_probs=237.9
Q ss_pred CCCCcHHHHHHHhccCCcch-hhhH---HhhcHhHHHhhcChh-hHHHHHhcC-CccceEEEEeeccCCCCCCCCCCCCC
Q 018336 27 VPGLPEEISLECLTRLHYST-HRVA---TRVSRRWRQLIQSRD-FYYQRKQSG-KTHKVACLVQSFPVHSGSGELKPMGL 100 (358)
Q Consensus 27 ~~~Lp~d~~~~il~rlp~~~-~~~~---~~v~k~w~~l~~s~~-f~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 100 (358)
++-||+..+.+++...+.-. -..+ -.-.|.|..+..... ....+.... .....|+++||...... .
T Consensus 228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~--------~ 299 (571)
T KOG4441|consen 228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQ--------S 299 (571)
T ss_pred ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCc--------c
Confidence 46677777777777665111 0111 111223332222111 111111111 34567888998754111 4
Q ss_pred cceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336 101 SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF 180 (358)
Q Consensus 101 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 180 (358)
...+..|||.++.|..+++||.++. .++++++++.||++||.+. ....++++++||+.+++|..+++|+.+|..+
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~----~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~ 374 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRC----RVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTKRSDF 374 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccc----cccEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCccccc
Confidence 5689999999999999999998653 5689999999999999984 2235899999999999999999999999999
Q ss_pred eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336 181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
++++++|.||++||.+.. ..++++++||+.+++|..+++|+..|.++++++++|+||++||...... .+.++++|||
T Consensus 375 ~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~--~l~sve~YDP 451 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN--CLNSVECYDP 451 (571)
T ss_pred eeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc--ccceEEEEcC
Confidence 999999999999999954 5688999999999999999999999999999999999999999876542 5789999999
Q ss_pred CCCceEEcCCccccCCCCCceeee-----------------------eecCccCceeccccc--eeeceEEEEeCCeEEE
Q 018336 261 GTGEWKRAENAWKLSQCPRSNVGV-----------------------GREGKLFCWAETEAA--VQFGTCRVELGGCTLV 315 (358)
Q Consensus 261 ~~~~W~~~~~~p~~~~~~~~~~~~-----------------------~~d~~~~~W~~lp~~--~r~~~~~~~~~~~i~v 315 (358)
.+++|+.+++|+. +|..+++ .||+++++|..++++ .|...+++..+++||+
T Consensus 452 ~t~~W~~~~~M~~----~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 452 ETNTWTLIAPMNT----RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYA 527 (571)
T ss_pred CCCceeecCCccc----ccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEE
Confidence 9999999999964 3333333 799999999888766 4688899999999999
Q ss_pred ECCCCCCCC-ceEEEEECCCCceEee-cCCCCccCceeeeeEE
Q 018336 316 TGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEYKGLVQSGCCV 356 (358)
Q Consensus 316 ~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~~~~~~~~~~~ 356 (358)
+||+..... +.+.+|||++++|+.. + |....+. ++|++
T Consensus 528 vGG~~~~~~l~~ve~ydp~~d~W~~~~~-~~~~~~~--~~~~~ 567 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPETDTWTEVTE-PESGRGG--AGVAV 567 (571)
T ss_pred EecccCccccceeEEcCCCCCceeeCCC-ccccccC--cceEE
Confidence 999766655 8999999999999999 5 5444444 55543
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=287.78 Aligned_cols=229 Identities=11% Similarity=0.182 Sum_probs=191.9
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA 182 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~ 182 (358)
.+++|||.+++|..++++|.++ ..+++++.++.||++||..... ...+++++||+.+++|..+++||.+|..+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r----~~~~~a~l~~~IYviGG~~~~~-~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI----INYASAIVDNEIIIAGGYNFNN-PSLNKVYKINIENKIHVELPPMIKNRCRFSL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc----cceEEEEECCEEEEEcCCCCCC-CccceEEEEECCCCeEeeCCCCcchhhceeE
Confidence 5789999999999999999865 3457888999999999975222 2467899999999999999999999999999
Q ss_pred EEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCC--------------
Q 018336 183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQ-------------- 248 (358)
Q Consensus 183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~-------------- 248 (358)
++++++||++||.+.. ...+++++||+.+++|+.+++||.+|..+++++++|+||++||......
T Consensus 348 ~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 348 AVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 9999999999998654 3467899999999999999999999999999999999999999864210
Q ss_pred -CceeeeeEEEECCCCceEEcCCccccCCCCCceeee---------------------eecCcc-Cceeccccc--eeec
Q 018336 249 -GIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV---------------------GREGKL-FCWAETEAA--VQFG 303 (358)
Q Consensus 249 -~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---------------------~~d~~~-~~W~~lp~~--~r~~ 303 (358)
....+.+++|||.+++|+.+++|+.+. .....+.+ .||+++ ++|..++++ .|..
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 112568999999999999999986532 11111111 799999 899888776 4688
Q ss_pred eEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336 304 TCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 304 ~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
+++++++|+||++||.+.. ..+++||+.+++|+.+
T Consensus 506 ~~~~~~~~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 506 LHTILHDNTIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred ceeEEECCEEEEEeeecce--eehhhcCcccccccch
Confidence 9999999999999998643 4789999999999998
No 3
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.3e-34 Score=273.04 Aligned_cols=229 Identities=14% Similarity=0.203 Sum_probs=189.8
Q ss_pred ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336 76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS 155 (358)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~ 155 (358)
.+..+|++||...... ...+++.||+.+++|..+++++.++ ..+++++.++.||++||.... ...+
T Consensus 293 ~~~~lyv~GG~~~~~~--------~~~~v~~yd~~~~~W~~~~~~~~~R----~~~~~~~~~~~lyv~GG~~~~--~~~~ 358 (534)
T PHA03098 293 LNNVIYFIGGMNKNNL--------SVNSVVSYDTKTKSWNKVPELIYPR----KNPGVTVFNNRIYVIGGIYNS--ISLN 358 (534)
T ss_pred ECCEEEEECCCcCCCC--------eeccEEEEeCCCCeeeECCCCCccc----ccceEEEECCEEEEEeCCCCC--Eecc
Confidence 4567889988643221 3457999999999999999998765 356888899999999998633 2467
Q ss_pred eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336 156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS 235 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~ 235 (358)
++++||+.+++|+.++++|.+|..++++.++++||++||.......++.+++||+.+++|+.++++|.+|.+++++++++
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 438 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDG 438 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECC
Confidence 89999999999999999999999999999999999999986655557899999999999999999999999999999999
Q ss_pred EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEE
Q 018336 236 EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLV 315 (358)
Q Consensus 236 ~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v 315 (358)
+||++||..........+.+++||+.+++|+.++.+|. + |..++++.++++|||
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~----------------------r~~~~~~~~~~~iyv 492 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF----P----------------------RINASLCIFNNKIYV 492 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc----c----------------------cccceEEEECCEEEE
Confidence 99999998654322224569999999999999987753 2 333455778999999
Q ss_pred ECCCCCCC-CceEEEEECCCCceEee-cCCC
Q 018336 316 TGSGYQGG-PQEFYVVEGRNGKFRKF-DVPA 344 (358)
Q Consensus 316 ~gG~~~~~-~~~i~~yd~~~~~W~~~-~~p~ 344 (358)
+||..... .+.+++||+++++|+.+ .+|+
T Consensus 493 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 493 VGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 99987554 27999999999999999 5444
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=263.03 Aligned_cols=207 Identities=17% Similarity=0.252 Sum_probs=175.0
Q ss_pred ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336 76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS 155 (358)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~ 155 (358)
.+..+|++||..... ....++.|||.+++|..+++|+.++. .+++++.+++||++||.+. .+
T Consensus 270 ~~~~lyviGG~~~~~---------~~~~v~~Ydp~~~~W~~~~~m~~~r~----~~~~v~~~~~iYviGG~~~-----~~ 331 (480)
T PHA02790 270 VGEVVYLIGGWMNNE---------IHNNAIAVNYISNNWIPIPPMNSPRL----YASGVPANNKLYVVGGLPN-----PT 331 (480)
T ss_pred ECCEEEEEcCCCCCC---------cCCeEEEEECCCCEEEECCCCCchhh----cceEEEECCEEEEECCcCC-----CC
Confidence 345788888753211 24578899999999999999998653 4578889999999999752 25
Q ss_pred eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336 156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS 235 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~ 235 (358)
++++||+.+++|..+++||.+|..+++++++++||++||.+.. ...+++||+.+++|+.+++|+.+|..+++++++|
T Consensus 332 sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~ 408 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR 408 (480)
T ss_pred ceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECC
Confidence 6899999999999999999999999999999999999998643 3679999999999999999999999999999999
Q ss_pred EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEE
Q 018336 236 EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLV 315 (358)
Q Consensus 236 ~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v 315 (358)
+||++||. +++||+.+++|+.+++|+. + |..+++++++|+|||
T Consensus 409 ~IYv~GG~-----------~e~ydp~~~~W~~~~~m~~----~----------------------r~~~~~~v~~~~IYv 451 (480)
T PHA02790 409 RLFLVGRN-----------AEFYCESSNTWTLIDDPIY----P----------------------RDNPELIIVDNKLLL 451 (480)
T ss_pred EEEEECCc-----------eEEecCCCCcEeEcCCCCC----C----------------------ccccEEEEECCEEEE
Confidence 99999973 3689999999999998853 3 344556899999999
Q ss_pred ECCCCCCCC-ceEEEEECCCCceEee
Q 018336 316 TGSGYQGGP-QEFYVVEGRNGKFRKF 340 (358)
Q Consensus 316 ~gG~~~~~~-~~i~~yd~~~~~W~~~ 340 (358)
+||.+.... +.+++||+++++|+..
T Consensus 452 iGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 452 IGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCcCCCcccceEEEEECCCCeEEec
Confidence 999864432 7899999999999874
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.6e-33 Score=249.63 Aligned_cols=233 Identities=18% Similarity=0.314 Sum_probs=178.7
Q ss_pred ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336 76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS 155 (358)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~ 155 (358)
.+..||++||...... ....+++.||+.+++|..+++++..+...+..+++++++++||++||..... .++
T Consensus 31 ~~~~iyv~GG~~~~~~-------~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~ 101 (341)
T PLN02153 31 VGDKLYSFGGELKPNE-------HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR--EFS 101 (341)
T ss_pred ECCEEEEECCccCCCC-------ceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC--ccC
Confidence 4568999998642111 0235799999999999998876532211123567889999999999986443 367
Q ss_pred eeEEEECCCCcEEeCCCC-----CCCceeeeeEEECCEEEEEcCcCCCC-----CCCCeEEEEECCCCceEecCCCc---
Q 018336 156 HVFVYDFTTRRWTRGKNM-----PDNRSFFAAGELNGRVIIAGGHDENK-----TALSSAWAYDLIKDEWTELARMT--- 222 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~-----~~~~~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~p--- 222 (358)
++++||+.+++|+.+++| |.+|..|+++.++++|||+||.+... ..+.++++||+++++|+.++.+.
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~ 181 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF 181 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence 999999999999999877 78899999999999999999986432 13568999999999999998653
Q ss_pred cCcCceeEEEECCEEEEEeCcccCC-----CCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccc
Q 018336 223 QERDECEAVVIGSEFWVVSGYKTER-----QGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETE 297 (358)
Q Consensus 223 ~~~~~~~~~~~~~~lyv~gG~~~~~-----~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp 297 (358)
.+|..+++++++++||++||..... .+...+.+++||+.+++|+.+..... .+.+
T Consensus 182 ~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-~P~~------------------- 241 (341)
T PLN02153 182 EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-KPSA------------------- 241 (341)
T ss_pred CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC-CCCC-------------------
Confidence 6888889999999999999975321 11225689999999999999875311 1123
Q ss_pred cceeeceEEEEeCCeEEEECCCCCC--------C--CceEEEEECCCCceEee
Q 018336 298 AAVQFGTCRVELGGCTLVTGSGYQG--------G--PQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 298 ~~~r~~~~~~~~~~~i~v~gG~~~~--------~--~~~i~~yd~~~~~W~~~ 340 (358)
|..++++.++++|||+||.... . .+++|+||+++++|+.+
T Consensus 242 ---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 242 ---RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred ---cceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 3445568899999999997421 1 16899999999999988
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.3e-32 Score=254.35 Aligned_cols=228 Identities=17% Similarity=0.262 Sum_probs=179.7
Q ss_pred ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336 76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS 155 (358)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~ 155 (358)
.+..+|++||...... ....++++||+.+++|..++.+...+...+..+++++++++||++||..... .++
T Consensus 174 ~~~~iyv~GG~~~~~~-------~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~--~~n 244 (470)
T PLN02193 174 VGNKIYSFGGEFTPNQ-------PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR--QYN 244 (470)
T ss_pred ECCEEEEECCcCCCCC-------CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC--CCc
Confidence 4578999998632111 0234799999999999987654322111134567888999999999986543 478
Q ss_pred eeEEEECCCCcEEeCCCC---CCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCC---CccCcCcee
Q 018336 156 HVFVYDFTTRRWTRGKNM---PDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELAR---MTQERDECE 229 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~~~~~~ 229 (358)
++++||+.+++|+.++++ |.+|..|+++..+++||++||.+.. ....++++||+.+++|+.++. +|.+|..+.
T Consensus 245 dv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~ 323 (470)
T PLN02193 245 GFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAG 323 (470)
T ss_pred cEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcE
Confidence 999999999999999887 7899999999999999999998764 356889999999999999874 667888899
Q ss_pred EEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEe
Q 018336 230 AVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL 309 (358)
Q Consensus 230 ~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~ 309 (358)
+++++++||++||.... ..+++++||+.+++|+.+..+.. .+.+ |..++++.+
T Consensus 324 ~~~~~gkiyviGG~~g~----~~~dv~~yD~~t~~W~~~~~~g~-~P~~----------------------R~~~~~~~~ 376 (470)
T PLN02193 324 LEVVQGKVWVVYGFNGC----EVDDVHYYDPVQDKWTQVETFGV-RPSE----------------------RSVFASAAV 376 (470)
T ss_pred EEEECCcEEEEECCCCC----ccCceEEEECCCCEEEEeccCCC-CCCC----------------------cceeEEEEE
Confidence 99999999999997643 26789999999999999876521 1133 344556889
Q ss_pred CCeEEEECCCCCC--------C-C-ceEEEEECCCCceEee
Q 018336 310 GGCTLVTGSGYQG--------G-P-QEFYVVEGRNGKFRKF 340 (358)
Q Consensus 310 ~~~i~v~gG~~~~--------~-~-~~i~~yd~~~~~W~~~ 340 (358)
+++|||+||.... . . +++++||+.+++|+++
T Consensus 377 ~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 377 GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 9999999998531 1 1 6899999999999998
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.1e-33 Score=261.80 Aligned_cols=207 Identities=24% Similarity=0.380 Sum_probs=182.0
Q ss_pred EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336 135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE 214 (358)
Q Consensus 135 ~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (358)
...+.||++||..+ .....+.+.+||+.+++|..+++||.+|..++++++++.||++||++.....++.+++||+.+++
T Consensus 282 ~~~~~l~~vGG~~~-~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNR-QGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCC-CCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 55788999999875 22457899999999999999999999999999999999999999999534568999999999999
Q ss_pred eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee----------
Q 018336 215 WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV---------- 284 (358)
Q Consensus 215 W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---------- 284 (358)
|+.+++|+.+|..+++++++|.||++||+++.. ...++++||+.+++|+.+++|+. +|..+++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~---~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK---SLNSVECYDPVTNKWTPVAPMLT----RRSGHGVAVLGGKLYII 433 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEecccccc---ccccEEEecCCCCcccccCCCCc----ceeeeEEEEECCEEEEE
Confidence 999999999999999999999999999998554 57899999999999999999863 4444433
Q ss_pred --------------eecCccCceeccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCCc
Q 018336 285 --------------GREGKLFCWAETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEY 346 (358)
Q Consensus 285 --------------~~d~~~~~W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~ 346 (358)
.||+.+++|..+|++ .|.++++++++++||++||.+.... ..+++|||.+++|+.+ +++.++
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 899999999999998 5788999999999999999987333 7799999999999999 677776
Q ss_pred cCc
Q 018336 347 KGL 349 (358)
Q Consensus 347 ~~~ 349 (358)
+..
T Consensus 514 s~~ 516 (571)
T KOG4441|consen 514 SAV 516 (571)
T ss_pred ccc
Confidence 655
No 8
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=5.4e-32 Score=241.56 Aligned_cols=243 Identities=16% Similarity=0.198 Sum_probs=180.1
Q ss_pred ccceEEEEeeccCCCCCCCC-CCCCCcceEEEEe-CCC-CCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCC
Q 018336 76 THKVACLVQSFPVHSGSGEL-KPMGLSYGVTVFD-PVS-LTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYS 152 (358)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~d-~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~ 152 (358)
.+..|+++||.+....+... ..+....+++.|+ +.. .+|..++++|.++ .+++++++++.||++||.....
T Consensus 12 ~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r----~~~~~~~~~~~lyviGG~~~~~-- 85 (323)
T TIGR03548 12 IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEA----AYGASVSVENGIYYIGGSNSSE-- 85 (323)
T ss_pred ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccc----cceEEEEECCEEEEEcCCCCCC--
Confidence 46789999997543211000 0011334677774 433 3799999998865 3456788899999999986433
Q ss_pred CcceeEEEECCCCcE----EeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCcc-CcCc
Q 018336 153 PVSHVFVYDFTTRRW----TRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ-ERDE 227 (358)
Q Consensus 153 ~~~~~~~yd~~t~~W----~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~~~~ 227 (358)
.++++++||+.+++| +.+++||.+|..+++++++++||++||.... ...+++++||+.+++|+.++++|. +|..
T Consensus 86 ~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~ 164 (323)
T TIGR03548 86 RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQ 164 (323)
T ss_pred CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCc
Confidence 478999999999998 7789999999999999999999999997543 346899999999999999998885 7888
Q ss_pred eeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEE
Q 018336 228 CEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRV 307 (358)
Q Consensus 228 ~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~ 307 (358)
+.+++++++|||+||..... ..++++||+.+++|+.++.++... .++.. +..++++
T Consensus 165 ~~~~~~~~~iYv~GG~~~~~----~~~~~~yd~~~~~W~~~~~~~~~~-~p~~~-------------------~~~~~~~ 220 (323)
T TIGR03548 165 PVCVKLQNELYVFGGGSNIA----YTDGYKYSPKKNQWQKVADPTTDS-EPISL-------------------LGAASIK 220 (323)
T ss_pred ceEEEECCEEEEEcCCCCcc----ccceEEEecCCCeeEECCCCCCCC-Cceec-------------------cceeEEE
Confidence 88889999999999985432 356789999999999998764211 12111 1223345
Q ss_pred EeCCeEEEECCCCCCC---------------------------------CceEEEEECCCCceEee-cCCC-CccCc
Q 018336 308 ELGGCTLVTGSGYQGG---------------------------------PQEFYVVEGRNGKFRKF-DVPA-EYKGL 349 (358)
Q Consensus 308 ~~~~~i~v~gG~~~~~---------------------------------~~~i~~yd~~~~~W~~~-~~p~-~~~~~ 349 (358)
..+++|||+||.+... .+.+++||+.+++|+.+ ++|. .+.++
T Consensus 221 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~ 297 (323)
T TIGR03548 221 INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGA 297 (323)
T ss_pred ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCch
Confidence 5689999999986321 15799999999999999 6663 34343
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.4e-31 Score=236.72 Aligned_cols=237 Identities=19% Similarity=0.225 Sum_probs=174.5
Q ss_pred ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeC--CCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCC---
Q 018336 76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDP--VSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPAS--- 150 (358)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~--- 150 (358)
.+..+|++||.. ...++.||+ .+++|..+++||..+ +..+++++++++||++||.....
T Consensus 16 ~~~~vyv~GG~~-------------~~~~~~~d~~~~~~~W~~l~~~p~~~---R~~~~~~~~~~~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 16 IGDKVYVGLGSA-------------GTSWYKLDLKKPSKGWQKIADFPGGP---RNQAVAAAIDGKLYVFGGIGKANSEG 79 (346)
T ss_pred ECCEEEEEcccc-------------CCeeEEEECCCCCCCceECCCCCCCC---cccceEEEECCEEEEEeCCCCCCCCC
Confidence 467888888752 236788885 678999999998421 34568889999999999975321
Q ss_pred -CCCcceeEEEECCCCcEEeCC-CCCCCceeeeeE-EECCEEEEEcCcCCCC----------------------------
Q 018336 151 -YSPVSHVFVYDFTTRRWTRGK-NMPDNRSFFAAG-ELNGRVIIAGGHDENK---------------------------- 199 (358)
Q Consensus 151 -~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~-~~~~~iyv~GG~~~~~---------------------------- 199 (358)
...++++++||+.+++|+.++ ++|.++..++++ .++++||++||.+...
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ 159 (346)
T ss_pred cceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCC
Confidence 124678999999999999997 456666666666 6899999999986320
Q ss_pred -----CCCCeEEEEECCCCceEecCCCcc-CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEE--CCCCceEEcCCc
Q 018336 200 -----TALSSAWAYDLIKDEWTELARMTQ-ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ--LGTGEWKRAENA 271 (358)
Q Consensus 200 -----~~~~~~~~yd~~t~~W~~~~~~p~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd--~~~~~W~~~~~~ 271 (358)
...+.+++||+.+++|+.+++||. +|..+++++++++|||+||..... .....++.|| +++++|+.++.|
T Consensus 160 ~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 160 PPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPG--LRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred ChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCC--ccchheEEEEecCCCceeeecCCC
Confidence 013689999999999999999986 688888899999999999985432 1123455555 567799999988
Q ss_pred cccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC------------------CceEEEEECC
Q 018336 272 WKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG------------------PQEFYVVEGR 333 (358)
Q Consensus 272 p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~------------------~~~i~~yd~~ 333 (358)
|.+....+.. +..++++.++++|||+||..... ...+++||++
T Consensus 238 ~~~r~~~~~~-------------------~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~ 298 (346)
T TIGR03547 238 PPPKSSSQEG-------------------LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD 298 (346)
T ss_pred CCCCCCcccc-------------------ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec
Confidence 6431000000 12344678999999999975211 0368899999
Q ss_pred CCceEee-cCCCCccCc
Q 018336 334 NGKFRKF-DVPAEYKGL 349 (358)
Q Consensus 334 ~~~W~~~-~~p~~~~~~ 349 (358)
+++|+.+ ++|.++..+
T Consensus 299 ~~~W~~~~~lp~~~~~~ 315 (346)
T TIGR03547 299 NGKWSKVGKLPQGLAYG 315 (346)
T ss_pred CCcccccCCCCCCceee
Confidence 9999999 888776544
No 10
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-32 Score=255.15 Aligned_cols=227 Identities=14% Similarity=0.167 Sum_probs=178.3
Q ss_pred hhcHhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCcee
Q 018336 52 RVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFC 131 (358)
Q Consensus 52 ~v~k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 131 (358)
...+.|..+...|.-.. .......+..+|++||...... ....++.|||.+++|..+++|+.++ ..+
T Consensus 279 ~~~~~W~~l~~mp~~r~-~~~~a~l~~~IYviGG~~~~~~--------~~~~v~~Yd~~~n~W~~~~~m~~~R----~~~ 345 (557)
T PHA02713 279 INTMEYSVISTIPNHII-NYASAIVDNEIIIAGGYNFNNP--------SLNKVYKINIENKIHVELPPMIKNR----CRF 345 (557)
T ss_pred CCCCeEEECCCCCcccc-ceEEEEECCEEEEEcCCCCCCC--------ccceEEEEECCCCeEeeCCCCcchh----hce
Confidence 33456766655443211 2223345678999998632111 2457999999999999999999865 356
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCC------------
Q 018336 132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK------------ 199 (358)
Q Consensus 132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~------------ 199 (358)
++++++++||++||.++.. ..+++++|||.+++|..+++||.+|..+++++++++||++||.+...
T Consensus 346 ~~~~~~g~IYviGG~~~~~--~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 346 SLAVIDDTIYAIGGQNGTN--VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred eEEEECCEEEEECCcCCCC--CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccc
Confidence 8899999999999986443 36789999999999999999999999999999999999999986421
Q ss_pred -----CCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC-CceEEcCCccc
Q 018336 200 -----TALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT-GEWKRAENAWK 273 (358)
Q Consensus 200 -----~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~-~~W~~~~~~p~ 273 (358)
...+.+++|||++++|+.+++|+.+|..+++++++|+||++||..... .....+++|||.+ ++|+.+++||.
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~--~~~~~ve~Ydp~~~~~W~~~~~m~~ 501 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEK--NVKTCIFRYNTNTYNGWELITTTES 501 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCC--ccceeEEEecCCCCCCeeEccccCc
Confidence 125789999999999999999999999999999999999999986432 2245689999999 89999999874
Q ss_pred cCCCCCceeee--------------------eecCccCceeccccc
Q 018336 274 LSQCPRSNVGV--------------------GREGKLFCWAETEAA 299 (358)
Q Consensus 274 ~~~~~~~~~~~--------------------~~d~~~~~W~~lp~~ 299 (358)
+|..+++ .||+.+++|..+.+.
T Consensus 502 ----~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 502 ----RLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred ----ccccceeEEECCEEEEEeeecceeehhhcCcccccccchhhh
Confidence 3332222 799999999887765
No 11
>PHA03098 kelch-like protein; Provisional
Probab=99.98 E-value=1.3e-30 Score=248.40 Aligned_cols=212 Identities=14% Similarity=0.188 Sum_probs=175.6
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA 182 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~ 182 (358)
.+..|++..++|..+++.+. +..+++++.++.||++||..... ...+++++||+.+++|..+++|+.+|..+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~ 338 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-----VYCFGSVVLNNVIYFIGGMNKNN-LSVNSVVSYDTKTKSWNKVPELIYPRKNPGV 338 (534)
T ss_pred eeeecchhhhhcccccCccc-----cccceEEEECCEEEEECCCcCCC-CeeccEEEEeCCCCeeeECCCCCcccccceE
Confidence 45578888999988876654 22357888999999999986433 2457899999999999999999999999999
Q ss_pred EEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336 183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT 262 (358)
Q Consensus 183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~ 262 (358)
+.++++||++||.+.. ...+++++||+.+++|+.++++|.+|..+++++++|+||++||..... ...+.+++||+.+
T Consensus 339 ~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~v~~yd~~t 415 (534)
T PHA03098 339 TVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKND--ELLKTVECFSLNT 415 (534)
T ss_pred EEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCC--cccceEEEEeCCC
Confidence 9999999999998743 457889999999999999999999999999999999999999975432 2367899999999
Q ss_pred CceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC----CceEEEEECCCCceE
Q 018336 263 GEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG----PQEFYVVEGRNGKFR 338 (358)
Q Consensus 263 ~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~----~~~i~~yd~~~~~W~ 338 (358)
++|+.++.+|.+ |..++++..+++|||+||..... .+.+++||+.+++|+
T Consensus 416 ~~W~~~~~~p~~--------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 416 NKWSKGSPLPIS--------------------------HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CeeeecCCCCcc--------------------------ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 999999887532 33445688999999999986432 156999999999999
Q ss_pred ee-cCCCCccCc
Q 018336 339 KF-DVPAEYKGL 349 (358)
Q Consensus 339 ~~-~~p~~~~~~ 349 (358)
.+ ++|.++..+
T Consensus 470 ~~~~~~~~r~~~ 481 (534)
T PHA03098 470 ELSSLNFPRINA 481 (534)
T ss_pred eCCCCCcccccc
Confidence 99 677665544
No 12
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=1.7e-29 Score=226.99 Aligned_cols=213 Identities=18% Similarity=0.242 Sum_probs=164.0
Q ss_pred CCCCCeeecCC----CCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCC-CCc---eee
Q 018336 109 PVSLTWDRLGP----VPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP-DNR---SFF 180 (358)
Q Consensus 109 ~~~~~W~~~~~----~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~---~~~ 180 (358)
+...+|..+.. +|.++ ..++++++++.|||+||.........+++++||+.+++|..+++++ .++ ..+
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR----~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPR----CSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCC----CcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 46778999876 45543 4568888999999999985432233578999999999999988764 344 367
Q ss_pred eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC-----ccCcCceeEEEECCEEEEEeCcccCCC---Ccee
Q 018336 181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM-----TQERDECEAVVIGSEFWVVSGYKTERQ---GIFD 252 (358)
Q Consensus 181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~~~~~~~~~~~~~lyv~gG~~~~~~---~~~~ 252 (358)
++++++++||++||.... ...+++++||+.+++|+.++++ |.+|..+++++++++|||+||...... ...+
T Consensus 80 ~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 888999999999998754 3467899999999999999876 788999999999999999999864321 1134
Q ss_pred eeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC--------C-
Q 018336 253 ESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG--------G- 323 (358)
Q Consensus 253 ~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~--------~- 323 (358)
+++++||+++++|+.++.+... +.+ |..++++.++++|||+||.... .
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~-~~~----------------------r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~ 215 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGEN-FEK----------------------RGGAGFAVVQGKIWVVYGFATSILPGGKSDYE 215 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCC-CCC----------------------CCcceEEEECCeEEEEeccccccccCCcccee
Confidence 6899999999999998865321 122 4455568899999999986421 1
Q ss_pred CceEEEEECCCCceEee-c---CCCCccCc
Q 018336 324 PQEFYVVEGRNGKFRKF-D---VPAEYKGL 349 (358)
Q Consensus 324 ~~~i~~yd~~~~~W~~~-~---~p~~~~~~ 349 (358)
.+++++||+.+++|+++ . +|.++..+
T Consensus 216 ~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~ 245 (341)
T PLN02153 216 SNAVQFFDPASGKWTEVETTGAKPSARSVF 245 (341)
T ss_pred cCceEEEEcCCCcEEeccccCCCCCCccee
Confidence 26899999999999998 2 46666555
No 13
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=2.8e-29 Score=233.74 Aligned_cols=217 Identities=16% Similarity=0.238 Sum_probs=168.2
Q ss_pred ceEEEEeCCC----CCeeecCCC---CCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC-
Q 018336 102 YGVTVFDPVS----LTWDRLGPV---PEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM- 173 (358)
Q Consensus 102 ~~~~~~d~~~----~~W~~~~~~---~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~- 173 (358)
..++.+++.+ ++|..+.++ |.+ +..|+++++++.||++||.........+++|+||+.+++|..++++
T Consensus 137 ig~y~~~~~~~~~~~~W~~~~~~~~~P~p----R~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g 212 (470)
T PLN02193 137 LGAYISLPSTPKLLGKWIKVEQKGEGPGL----RCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG 212 (470)
T ss_pred eEEEEecCCChhhhceEEEcccCCCCCCC----ccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC
Confidence 3455567655 899998764 443 4567888999999999997533222346899999999999987643
Q ss_pred --CC-CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC---ccCcCceeEEEECCEEEEEeCcccCC
Q 018336 174 --PD-NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM---TQERDECEAVVIGSEFWVVSGYKTER 247 (358)
Q Consensus 174 --~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~~~~~~~~~~~~~lyv~gG~~~~~ 247 (358)
|. .|..++++.++++||++||.+.. ...+++++||+.+++|+.++++ |.+|..|++++++++|||+||.....
T Consensus 213 ~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~ 291 (470)
T PLN02193 213 DVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA 291 (470)
T ss_pred CCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC
Confidence 33 24678888999999999998754 3578999999999999999877 78999999999999999999986432
Q ss_pred CCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceE
Q 018336 248 QGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEF 327 (358)
Q Consensus 248 ~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i 327 (358)
....+++||+.+++|+.++.... .+.+ |..++++.++++|||+||......+++
T Consensus 292 ---~~~~~~~yd~~t~~W~~~~~~~~-~~~~----------------------R~~~~~~~~~gkiyviGG~~g~~~~dv 345 (470)
T PLN02193 292 ---RLKTLDSYNIVDKKWFHCSTPGD-SFSI----------------------RGGAGLEVVQGKVWVVYGFNGCEVDDV 345 (470)
T ss_pred ---CcceEEEEECCCCEEEeCCCCCC-CCCC----------------------CCCcEEEEECCcEEEEECCCCCccCce
Confidence 36789999999999998875311 1122 444556889999999999754333899
Q ss_pred EEEECCCCceEee-cC---CCCccCc
Q 018336 328 YVVEGRNGKFRKF-DV---PAEYKGL 349 (358)
Q Consensus 328 ~~yd~~~~~W~~~-~~---p~~~~~~ 349 (358)
++||+++++|+.+ .+ |.++..+
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCccee
Confidence 9999999999998 43 5555544
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=1.4e-29 Score=230.15 Aligned_cols=238 Identities=18% Similarity=0.248 Sum_probs=172.7
Q ss_pred ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCC--CCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCC---
Q 018336 76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPV--SLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPAS--- 150 (358)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~--- 150 (358)
.+..+|++++.. ...++.||.. +++|..++++|..+ +..++++++++.||++||.....
T Consensus 37 ~~~~iyv~gG~~-------------~~~~~~~d~~~~~~~W~~l~~~p~~~---r~~~~~v~~~~~IYV~GG~~~~~~~~ 100 (376)
T PRK14131 37 DNNTVYVGLGSA-------------GTSWYKLDLNAPSKGWTKIAAFPGGP---REQAVAAFIDGKLYVFGGIGKTNSEG 100 (376)
T ss_pred ECCEEEEEeCCC-------------CCeEEEEECCCCCCCeEECCcCCCCC---cccceEEEECCEEEEEcCCCCCCCCC
Confidence 467888887752 1257788876 57899999887422 44567889999999999975411
Q ss_pred -CCCcceeEEEECCCCcEEeCCC-CCCCceeeeeEE-ECCEEEEEcCcCCCC----------------------------
Q 018336 151 -YSPVSHVFVYDFTTRRWTRGKN-MPDNRSFFAAGE-LNGRVIIAGGHDENK---------------------------- 199 (358)
Q Consensus 151 -~~~~~~~~~yd~~t~~W~~~~~-~~~~~~~~~~~~-~~~~iyv~GG~~~~~---------------------------- 199 (358)
...++++++||+.+++|+.+++ +|.++..+++++ .+++||++||.....
T Consensus 101 ~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~ 180 (376)
T PRK14131 101 SPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDK 180 (376)
T ss_pred ceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcC
Confidence 1236789999999999999985 466666677666 799999999975310
Q ss_pred -----CCCCeEEEEECCCCceEecCCCcc-CcCceeEEEECCEEEEEeCcccCCCCceeeee--EEEECCCCceEEcCCc
Q 018336 200 -----TALSSAWAYDLIKDEWTELARMTQ-ERDECEAVVIGSEFWVVSGYKTERQGIFDESA--ESYQLGTGEWKRAENA 271 (358)
Q Consensus 200 -----~~~~~~~~yd~~t~~W~~~~~~p~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i--~~yd~~~~~W~~~~~~ 271 (358)
...+.+++||+.+++|+.++++|. ++..++++.++++|||+||...... ....+ ..||+++++|+.+..+
T Consensus 181 ~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~--~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 181 KPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL--RTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred ChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc--CChhheEEEecCCCcceeecCCC
Confidence 014689999999999999999996 6778888899999999999754321 12233 3567789999999988
Q ss_pred cccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC---------------C---ceEEEEECC
Q 018336 272 WKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG---------------P---QEFYVVEGR 333 (358)
Q Consensus 272 p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~---------------~---~~i~~yd~~ 333 (358)
|.+ |..... ..+..+.++.++++|||+||..... . ..+++||++
T Consensus 259 p~~----~~~~~~--------------~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~ 320 (376)
T PRK14131 259 PPA----PGGSSQ--------------EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV 320 (376)
T ss_pred CCC----CcCCcC--------------CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec
Confidence 642 110000 0011223567899999999976321 0 246789999
Q ss_pred CCceEee-cCCCCccCc
Q 018336 334 NGKFRKF-DVPAEYKGL 349 (358)
Q Consensus 334 ~~~W~~~-~~p~~~~~~ 349 (358)
+++|+.+ .+|.++..+
T Consensus 321 ~~~W~~~~~lp~~r~~~ 337 (376)
T PRK14131 321 NGKWQKVGELPQGLAYG 337 (376)
T ss_pred CCcccccCcCCCCccce
Confidence 9999999 888887655
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=4.9e-29 Score=224.88 Aligned_cols=246 Identities=17% Similarity=0.209 Sum_probs=171.1
Q ss_pred hcHhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCC-CCCCCCCCCcee
Q 018336 53 VSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGP-VPEYPAGLPLFC 131 (358)
Q Consensus 53 v~k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~~~~~~~~~~~~ 131 (358)
..++|..+...|...+........+..||++||....... ........++.|||.+++|..++. +|.. +..+
T Consensus 39 ~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~---~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~----~~~~ 111 (346)
T TIGR03547 39 PSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSE---GSPQVFDDVYRYDPKKNSWQKLDTRSPVG----LLGA 111 (346)
T ss_pred CCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCC---CcceecccEEEEECCCCEEecCCCCCCCc----ccce
Confidence 3467887766553222222333456789999986432100 000124579999999999999973 3332 2233
Q ss_pred EEE-EECCEEEEEcCcCCCCC--------------------------------CCcceeEEEECCCCcEEeCCCCCC-Cc
Q 018336 132 QVA-SSQGKLVVMGGWDPASY--------------------------------SPVSHVFVYDFTTRRWTRGKNMPD-NR 177 (358)
Q Consensus 132 ~~~-~~~~~lyv~Gg~~~~~~--------------------------------~~~~~~~~yd~~t~~W~~~~~~~~-~~ 177 (358)
+++ +.+++||++||...... ...+++++|||.+++|+.+++||. +|
T Consensus 112 ~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r 191 (346)
T TIGR03547 112 SGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT 191 (346)
T ss_pred eEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcC
Confidence 444 68999999999753200 013689999999999999999996 68
Q ss_pred eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEE--CCCCceEecCCCccCcC-------ceeEEEECCEEEEEeCcccCCC
Q 018336 178 SFFAAGELNGRVIIAGGHDENKTALSSAWAYD--LIKDEWTELARMTQERD-------ECEAVVIGSEFWVVSGYKTERQ 248 (358)
Q Consensus 178 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd--~~t~~W~~~~~~p~~~~-------~~~~~~~~~~lyv~gG~~~~~~ 248 (358)
..++++.++++||++||..........+++|+ +.+++|+.+++||.+|. .+.+++++|+||++||......
T Consensus 192 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~ 271 (346)
T TIGR03547 192 AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGA 271 (346)
T ss_pred CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCc
Confidence 88888999999999999865432334566665 46789999999987652 3446789999999999753210
Q ss_pred -------------C-ceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEE
Q 018336 249 -------------G-IFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTL 314 (358)
Q Consensus 249 -------------~-~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~ 314 (358)
+ .....+++||+++++|+.+..+|.+ |..++++.++++||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~--------------------------~~~~~~~~~~~~iy 325 (346)
T TIGR03547 272 QENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG--------------------------LAYGVSVSWNNGVL 325 (346)
T ss_pred hhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC--------------------------ceeeEEEEcCCEEE
Confidence 0 0124689999999999999988632 33445678999999
Q ss_pred EECCCCCCCC--ceEEEEE
Q 018336 315 VTGSGYQGGP--QEFYVVE 331 (358)
Q Consensus 315 v~gG~~~~~~--~~i~~yd 331 (358)
|+||.+..+. ++++.|-
T Consensus 326 v~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 326 LIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EEeccCCCCCEeeeEEEEE
Confidence 9999876543 6776653
No 16
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=3.2e-29 Score=202.63 Aligned_cols=224 Identities=15% Similarity=0.268 Sum_probs=181.1
Q ss_pred CceeEEEEECCEEEEEcCcCCCC-CC--CcceeEEEECCCCcEEeCCC-------------CCCCceeeeeEEECCEEEE
Q 018336 128 PLFCQVASSQGKLVVMGGWDPAS-YS--PVSHVFVYDFTTRRWTRGKN-------------MPDNRSFFAAGELNGRVII 191 (358)
Q Consensus 128 ~~~~~~~~~~~~lyv~Gg~~~~~-~~--~~~~~~~yd~~t~~W~~~~~-------------~~~~~~~~~~~~~~~~iyv 191 (358)
+.-|++++++..||-+||+.... .+ -.-++.++|..+-+|.++++ .|..|+.|+.+.+++++|+
T Consensus 14 RVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yv 93 (392)
T KOG4693|consen 14 RVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYV 93 (392)
T ss_pred cccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEE
Confidence 55678999999999999975322 11 22379999999999999875 3566899999999999999
Q ss_pred EcCcCCCCCCCCeEEEEECCCCceEecC---CCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336 192 AGGHDENKTALSSAWAYDLIKDEWTELA---RMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA 268 (358)
Q Consensus 192 ~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~ 268 (358)
.||.++....-+.+++||++++.|.+.. -.|.+|.+|+++++++.+|+|||+....+ .+.+++.++|..+.+|..+
T Consensus 94 WGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~-~FS~d~h~ld~~TmtWr~~ 172 (392)
T KOG4693|consen 94 WGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQ-RFSQDTHVLDFATMTWREM 172 (392)
T ss_pred EcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHH-hhhccceeEeccceeeeeh
Confidence 9999987677789999999999999764 67999999999999999999999875432 4678999999999999998
Q ss_pred CCccccCCCCCceeee--------------------------------eecCccCceeccccc-----eeeceEEEEeCC
Q 018336 269 ENAWKLSQCPRSNVGV--------------------------------GREGKLFCWAETEAA-----VQFGTCRVELGG 311 (358)
Q Consensus 269 ~~~p~~~~~~~~~~~~--------------------------------~~d~~~~~W~~lp~~-----~r~~~~~~~~~~ 311 (358)
...-.+ +..|.++.. .+|.++..|...|+. -|..+++.+.++
T Consensus 173 ~Tkg~P-prwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng 251 (392)
T KOG4693|consen 173 HTKGDP-PRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNG 251 (392)
T ss_pred hccCCC-chhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcc
Confidence 764322 134444433 689999999666544 367899999999
Q ss_pred eEEEECCCCCCCC---ceEEEEECCCCceEee----cCCCCccCceeeeeE
Q 018336 312 CTLVTGSGYQGGP---QEFYVVEGRNGKFRKF----DVPAEYKGLVQSGCC 355 (358)
Q Consensus 312 ~i~v~gG~~~~~~---~~i~~yd~~~~~W~~~----~~p~~~~~~~~~~~~ 355 (358)
+||+|||++..-. +++|+|||.+..|+.| ..|.+++.+ ++|.
T Consensus 252 ~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRq--C~~v 300 (392)
T KOG4693|consen 252 KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQ--CSVV 300 (392)
T ss_pred eEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccce--eEEE
Confidence 9999999975533 9999999999999999 567776666 5554
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1.3e-28 Score=229.77 Aligned_cols=173 Identities=13% Similarity=0.261 Sum_probs=148.5
Q ss_pred EEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336 133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK 212 (358)
Q Consensus 133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 212 (358)
++..++.||++||.++. ...+.+++|||.+++|..+++|+.+|..+++++++++||++||.+.. ..++.||+.+
T Consensus 267 ~~~~~~~lyviGG~~~~--~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~ 340 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN--EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGD 340 (480)
T ss_pred eEEECCEEEEEcCCCCC--CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCC
Confidence 45589999999997543 34678999999999999999999999999999999999999997532 5699999999
Q ss_pred CceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCc
Q 018336 213 DEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFC 292 (358)
Q Consensus 213 ~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~ 292 (358)
++|..+++||.+|..+++++++|+||++||.... ...+++|||.+++|+.+++++.+
T Consensus 341 n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~------------------ 397 (480)
T PHA02790 341 AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYP------------------ 397 (480)
T ss_pred CeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCc------------------
Confidence 9999999999999999999999999999997532 35789999999999999888632
Q ss_pred eeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee-cCCCCccCc
Q 018336 293 WAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF-DVPAEYKGL 349 (358)
Q Consensus 293 W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~-~~p~~~~~~ 349 (358)
|..+++++++|+|||+||. +.+||+++++|+.+ ++|.++..+
T Consensus 398 --------r~~~~~~~~~~~IYv~GG~-------~e~ydp~~~~W~~~~~m~~~r~~~ 440 (480)
T PHA02790 398 --------HYKSCALVFGRRLFLVGRN-------AEFYCESSNTWTLIDDPIYPRDNP 440 (480)
T ss_pred --------cccceEEEECCEEEEECCc-------eEEecCCCCcEeEcCCCCCCcccc
Confidence 3344568899999999983 57899999999999 777766555
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=5.7e-29 Score=226.09 Aligned_cols=253 Identities=16% Similarity=0.167 Sum_probs=177.7
Q ss_pred cHhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCC-CCCCCCCCceeE
Q 018336 54 SRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPV-PEYPAGLPLFCQ 132 (358)
Q Consensus 54 ~k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-~~~~~~~~~~~~ 132 (358)
.++|..+...|...+........+..+|++||...... ........++++||+.+++|..++.+ |.+ +..++
T Consensus 61 ~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~---~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~----~~~~~ 133 (376)
T PRK14131 61 SKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNS---EGSPQVFDDVYKYDPKTNSWQKLDTRSPVG----LAGHV 133 (376)
T ss_pred CCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCC---CCceeEcccEEEEeCCCCEEEeCCCCCCCc----ccceE
Confidence 35787666554322222233345678999998643100 00001246799999999999999853 332 23345
Q ss_pred EEE-ECCEEEEEcCcCCCC--------------------------------CCCcceeEEEECCCCcEEeCCCCCC-Cce
Q 018336 133 VAS-SQGKLVVMGGWDPAS--------------------------------YSPVSHVFVYDFTTRRWTRGKNMPD-NRS 178 (358)
Q Consensus 133 ~~~-~~~~lyv~Gg~~~~~--------------------------------~~~~~~~~~yd~~t~~W~~~~~~~~-~~~ 178 (358)
+++ .+++||++||..... ....+++++||+.+++|..++++|. +|.
T Consensus 134 ~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~ 213 (376)
T PRK14131 134 AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTA 213 (376)
T ss_pred EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCC
Confidence 555 799999999975310 0124689999999999999999996 678
Q ss_pred eeeeEEECCEEEEEcCcCCCCCCCCeEE--EEECCCCceEecCCCccCcCc--------eeEEEECCEEEEEeCcccCCC
Q 018336 179 FFAAGELNGRVIIAGGHDENKTALSSAW--AYDLIKDEWTELARMTQERDE--------CEAVVIGSEFWVVSGYKTERQ 248 (358)
Q Consensus 179 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~--~yd~~t~~W~~~~~~p~~~~~--------~~~~~~~~~lyv~gG~~~~~~ 248 (358)
.++++.++++||++||..........++ .||+++++|+.+++||.+|.. +.+++++++||++||......
T Consensus 214 ~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~ 293 (376)
T PRK14131 214 GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGA 293 (376)
T ss_pred cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCC
Confidence 8888889999999999754433334444 457789999999999877642 225678999999999763210
Q ss_pred ------Cc--------eeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEE
Q 018336 249 ------GI--------FDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTL 314 (358)
Q Consensus 249 ------~~--------~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~ 314 (358)
+. ....+++||+++++|+.+..+|.+ |..++++.++++||
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~--------------------------r~~~~av~~~~~iy 347 (376)
T PRK14131 294 RENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG--------------------------LAYGVSVSWNNGVL 347 (376)
T ss_pred hhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC--------------------------ccceEEEEeCCEEE
Confidence 00 113578999999999999888643 33445788999999
Q ss_pred EECCCCCCCC--ceEEEEECCCCceEe
Q 018336 315 VTGSGYQGGP--QEFYVVEGRNGKFRK 339 (358)
Q Consensus 315 v~gG~~~~~~--~~i~~yd~~~~~W~~ 339 (358)
|+||...... +++++|+++.+++..
T Consensus 348 v~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 348 LIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 9999865433 899999999888765
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=5.3e-28 Score=215.89 Aligned_cols=225 Identities=16% Similarity=0.208 Sum_probs=163.0
Q ss_pred hHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCe----eecCCCCCCCCCCCcee
Q 018336 56 RWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTW----DRLGPVPEYPAGLPLFC 131 (358)
Q Consensus 56 ~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~~~~~~~~~~~~ 131 (358)
+|..+...|..... ......+..||++||..... ...+++.||+.+++| ..++++|.++ ..+
T Consensus 52 ~W~~~~~lp~~r~~-~~~~~~~~~lyviGG~~~~~---------~~~~v~~~d~~~~~w~~~~~~~~~lp~~~----~~~ 117 (323)
T TIGR03548 52 KWVKDGQLPYEAAY-GASVSVENGIYYIGGSNSSE---------RFSSVYRITLDESKEELICETIGNLPFTF----ENG 117 (323)
T ss_pred eEEEcccCCccccc-eEEEEECCEEEEEcCCCCCC---------CceeEEEEEEcCCceeeeeeEcCCCCcCc----cCc
Confidence 46655544432211 11223467889998863221 346899999999998 6788888764 345
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCC-CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEEC
Q 018336 132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPD-NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDL 210 (358)
Q Consensus 132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 210 (358)
++++.+++||++||.... ...+++++||+.+++|+.++++|. +|..++++.++++||++||.+.. ...++++||+
T Consensus 118 ~~~~~~~~iYv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~ 193 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNG--KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSP 193 (323)
T ss_pred eEEEECCEEEEEeCcCCC--ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEec
Confidence 788899999999997433 236899999999999999999884 78888888999999999998643 2356899999
Q ss_pred CCCceEecCCCc-----cCcCceeE-EEECCEEEEEeCcccCCC-----------------------------Cceeeee
Q 018336 211 IKDEWTELARMT-----QERDECEA-VVIGSEFWVVSGYKTERQ-----------------------------GIFDESA 255 (358)
Q Consensus 211 ~t~~W~~~~~~p-----~~~~~~~~-~~~~~~lyv~gG~~~~~~-----------------------------~~~~~~i 255 (358)
++++|+.+++++ ..+..+.+ ++.+++||++||.+.... ..+.+.+
T Consensus 194 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (323)
T TIGR03548 194 KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI 273 (323)
T ss_pred CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE
Confidence 999999998753 23333333 455799999999864210 0123568
Q ss_pred EEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC
Q 018336 256 ESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG 323 (358)
Q Consensus 256 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~ 323 (358)
++||+.+++|+.++.+|.. + |..++++.++++||++||....+
T Consensus 274 ~~yd~~~~~W~~~~~~p~~---~----------------------r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 274 LIYNVRTGKWKSIGNSPFF---A----------------------RCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred EEEECCCCeeeEccccccc---c----------------------cCchheEEECCEEEEEeccccCC
Confidence 8899998889888866421 2 44556789999999999986554
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=180.88 Aligned_cols=208 Identities=19% Similarity=0.299 Sum_probs=164.4
Q ss_pred cceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecC---CCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCC
Q 018336 77 HKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLG---PVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSP 153 (358)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~ 153 (358)
+..+|+.|+.+...+ ..+.+++|||.+++|++.. .+|.. +..|++++.++.+|++||+.....+-
T Consensus 88 ~d~~yvWGGRND~eg--------aCN~Ly~fDp~t~~W~~p~v~G~vPga----RDGHsAcV~gn~MyiFGGye~~a~~F 155 (392)
T KOG4693|consen 88 QDKAYVWGGRNDDEG--------ACNLLYEFDPETNVWKKPEVEGFVPGA----RDGHSACVWGNQMYIFGGYEEDAQRF 155 (392)
T ss_pred cceEEEEcCccCccc--------ccceeeeeccccccccccceeeecCCc----cCCceeeEECcEEEEecChHHHHHhh
Confidence 346778888765443 5678999999999997653 24444 45678999999999999997666566
Q ss_pred cceeEEEECCCCcEEeCC---CCCCCceeeeeEEECCEEEEEcCcCCCC--------CCCCeEEEEECCCCceEecCC--
Q 018336 154 VSHVFVYDFTTRRWTRGK---NMPDNRSFFAAGELNGRVIIAGGHDENK--------TALSSAWAYDLIKDEWTELAR-- 220 (358)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~~yd~~t~~W~~~~~-- 220 (358)
.+++.++|..|.+|+.+. ..|.-|..|++.++++.+|++||..+.. .+-+.+..+|..|+.|...++
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 789999999999999875 3455578899999999999999986532 234678899999999998874
Q ss_pred -CccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccc
Q 018336 221 -MTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAA 299 (358)
Q Consensus 221 -~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~ 299 (358)
.|..|..|++.+.|+++|+|||+.+.- +...+++++|||.+..|..+..--. .+++
T Consensus 236 ~~P~GRRSHS~fvYng~~Y~FGGYng~l-n~HfndLy~FdP~t~~W~~I~~~Gk-~P~a--------------------- 292 (392)
T KOG4693|consen 236 MKPGGRRSHSTFVYNGKMYMFGGYNGTL-NVHFNDLYCFDPKTSMWSVISVRGK-YPSA--------------------- 292 (392)
T ss_pred cCCCcccccceEEEcceEEEecccchhh-hhhhcceeecccccchheeeeccCC-CCCc---------------------
Confidence 477899999999999999999997643 3457899999999999999886421 1122
Q ss_pred eeeceEEEEeCCeEEEECCCC
Q 018336 300 VQFGTCRVELGGCTLVTGSGY 320 (358)
Q Consensus 300 ~r~~~~~~~~~~~i~v~gG~~ 320 (358)
|....+++.++++|+|||..
T Consensus 293 -RRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 293 -RRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred -ccceeEEEECCEEEEecCCC
Confidence 34445678999999999975
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.93 E-value=6.8e-24 Score=197.15 Aligned_cols=231 Identities=20% Similarity=0.311 Sum_probs=186.4
Q ss_pred ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336 76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS 155 (358)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~ 155 (358)
...-++++||....... ...+++++|..+..|.........+ ..+.++.+++++++||++||.... ....+
T Consensus 69 ~~~~~~vfGG~~~~~~~-------~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~~~~l~lfGG~~~~-~~~~~ 139 (482)
T KOG0379|consen 69 IGNKLYVFGGYGSGDRL-------TDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAVGDKLYLFGGTDKK-YRNLN 139 (482)
T ss_pred ECCEEEEECCCCCCCcc-------ccceeEEeecCCcccccccccCCCC-CcccceeEEEECCeEEEEccccCC-CCChh
Confidence 36678888886443321 1126999999999998775533322 125677889999999999998752 23578
Q ss_pred eeEEEECCCCcEEeCC---CCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC---CCccCcCcee
Q 018336 156 HVFVYDFTTRRWTRGK---NMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA---RMTQERDECE 229 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~~~ 229 (358)
+++.||+.|++|..+. .+|.+|.+|+++++++++||+||.+......+++++||+++.+|.++. ..|.+|.+|+
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~ 219 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHA 219 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCce
Confidence 9999999999999864 468899999999999999999999887667899999999999999985 6788999999
Q ss_pred EEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEe
Q 018336 230 AVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL 309 (358)
Q Consensus 230 ~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~ 309 (358)
+++++++++++||.. ..+.++++++.+|+.+.+|..+..... .+.+ |.+|..+..
T Consensus 220 ~~~~~~~~~v~gG~~--~~~~~l~D~~~ldl~~~~W~~~~~~g~-~p~~----------------------R~~h~~~~~ 274 (482)
T KOG0379|consen 220 MVVVGNKLLVFGGGD--DGDVYLNDVHILDLSTWEWKLLPTGGD-LPSP----------------------RSGHSLTVS 274 (482)
T ss_pred EEEECCeEEEEeccc--cCCceecceEeeecccceeeeccccCC-CCCC----------------------cceeeeEEE
Confidence 999999999999987 334579999999999999996665432 1233 455556799
Q ss_pred CCeEEEECCCCCC---CCceEEEEECCCCceEee
Q 018336 310 GGCTLVTGSGYQG---GPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 310 ~~~i~v~gG~~~~---~~~~i~~yd~~~~~W~~~ 340 (358)
+.+++|+||.... ...++|.||.+++.|..+
T Consensus 275 ~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 275 GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred CCEEEEEcCCcccccccccccccccccccceeee
Confidence 9999999998874 238899999999999999
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.92 E-value=3.7e-24 Score=183.14 Aligned_cols=273 Identities=16% Similarity=0.238 Sum_probs=190.3
Q ss_pred CCCcHHHHHHHhccCCcchhhhHH------hhcHhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCc
Q 018336 28 PGLPEEISLECLTRLHYSTHRVAT------RVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLS 101 (358)
Q Consensus 28 ~~Lp~d~~~~il~rlp~~~~~~~~------~v~k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 101 (358)
..|-++.|.+|+..|..+.....- ..|+.=.+|...| ...-|+++||...+..-+. .-
T Consensus 34 ~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nP-----------ekeELilfGGEf~ngqkT~-----vY 97 (521)
T KOG1230|consen 34 EELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANP-----------EKEELILFGGEFYNGQKTH-----VY 97 (521)
T ss_pred cccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeecc-----------CcceeEEecceeecceeEE-----Ee
Confidence 345577888898888877631111 1111111122221 2336777777543322100 23
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCC----CCCCcceeEEEECCCCcEEeCC--CCC
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPA----SYSPVSHVFVYDFTTRRWTRGK--NMP 174 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~----~~~~~~~~~~yd~~t~~W~~~~--~~~ 174 (358)
++++.||...+.|+.+.....|+. +..|+++++ .+.+|++||.-.. ..-...++|+||..|++|.++. .-|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~p--Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPP--RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCC--CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 689999999999998854332221 445566555 5899999995221 1234679999999999999974 578
Q ss_pred CCceeeeeEEECCEEEEEcCcCCCC---CCCCeEEEEECCCCceEecCC---CccCcCceeEEEE-CCEEEEEeCcccC-
Q 018336 175 DNRSFFAAGELNGRVIIAGGHDENK---TALSSAWAYDLIKDEWTELAR---MTQERDECEAVVI-GSEFWVVSGYKTE- 246 (358)
Q Consensus 175 ~~~~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~W~~~~~---~p~~~~~~~~~~~-~~~lyv~gG~~~~- 246 (358)
.+|++|-+++...+|++|||+.+.. .+.+++++||+.|-+|.++.+ -|.+|++|...+. +|.|||.||+...
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence 9999999999999999999975542 358999999999999999864 4789999998877 9999999998743
Q ss_pred -----CCCceeeeeEEEECCC-----CceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEE
Q 018336 247 -----RQGIFDESAESYQLGT-----GEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVT 316 (358)
Q Consensus 247 -----~~~~~~~~i~~yd~~~-----~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~ 316 (358)
..|...++++.+++.. -.|..+.+.-. .+.+|+.+.+ ++.-+++-|.|
T Consensus 256 ~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~-kPspRsgfsv---------------------~va~n~kal~F 313 (521)
T KOG1230|consen 256 VKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGV-KPSPRSGFSV---------------------AVAKNHKALFF 313 (521)
T ss_pred hhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCC-CCCCCCceeE---------------------EEecCCceEEe
Confidence 2345577899999987 35777765421 1244444333 34456799999
Q ss_pred CCCCC-CCC---------ceEEEEECCCCceEee
Q 018336 317 GSGYQ-GGP---------QEFYVVEGRNGKFRKF 340 (358)
Q Consensus 317 gG~~~-~~~---------~~i~~yd~~~~~W~~~ 340 (358)
||.-+ ... +++|.||...++|.+.
T Consensus 314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 314 GGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred cceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 99865 111 8999999999999887
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=188.74 Aligned_cols=200 Identities=21% Similarity=0.363 Sum_probs=165.7
Q ss_pred CceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC---CCCCCceeeeeEEECCEEEEEcCcCCCCCCCCe
Q 018336 128 PLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK---NMPDNRSFFAAGELNGRVIIAGGHDENKTALSS 204 (358)
Q Consensus 128 ~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 204 (358)
+..|+++.+++++||+||..........++|++|..+..|.... ..|.+|..|.++.++++||++||.+......++
T Consensus 61 R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~ 140 (482)
T KOG0379|consen 61 RAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNE 140 (482)
T ss_pred hhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhh
Confidence 45678888899999999976544312226999999999998753 567899999999999999999999875556889
Q ss_pred EEEEECCCCceEecC---CCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCce
Q 018336 205 AWAYDLIKDEWTELA---RMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSN 281 (358)
Q Consensus 205 ~~~yd~~t~~W~~~~---~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~ 281 (358)
++.||+.|++|..+. ..|.+|.+|+++++++++||+||.....+ ..+++++||+++.+|.++...... +.+
T Consensus 141 l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~-P~p--- 214 (482)
T KOG0379|consen 141 LHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD--SLNDLHIYDLETSTWSELDTQGEA-PSP--- 214 (482)
T ss_pred eEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc--ceeeeeeeccccccceecccCCCC-CCC---
Confidence 999999999999875 56889999999999999999999876653 589999999999999999875321 123
Q ss_pred eeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCC--ceEEEEECCCCceEee----cCCCCccCceee
Q 018336 282 VGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGP--QEFYVVEGRNGKFRKF----DVPAEYKGLVQS 352 (358)
Q Consensus 282 ~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~--~~i~~yd~~~~~W~~~----~~p~~~~~~~~~ 352 (358)
|.+|+++.++++++|+||...... +++|.+|+.+.+|.++ .+|.++.+|...
T Consensus 215 -------------------R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~ 272 (482)
T KOG0379|consen 215 -------------------RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT 272 (482)
T ss_pred -------------------CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeE
Confidence 667778999999999999873333 9999999999999977 678888887544
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=4.2e-22 Score=170.63 Aligned_cols=190 Identities=18% Similarity=0.339 Sum_probs=150.1
Q ss_pred CCEEEEEcCc--CCCCCCCcceeEEEECCCCcEEeC--CCCCCCceeeeeEEE-CCEEEEEcCcCCCCC-----CCCeEE
Q 018336 137 QGKLVVMGGW--DPASYSPVSHVFVYDFTTRRWTRG--KNMPDNRSFFAAGEL-NGRVIIAGGHDENKT-----ALSSAW 206 (358)
Q Consensus 137 ~~~lyv~Gg~--~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~-----~~~~~~ 206 (358)
.+.|+++||. ++......+++++||..+++|+.+ |..|.||+.|.++++ .+.+|++||--...+ ...++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 4689999995 222223568999999999999986 678899999988876 589999999533211 246899
Q ss_pred EEECCCCceEecC--CCccCcCceeEEEECCEEEEEeCcccCC-CCceeeeeEEEECCCCceEEcCCccccCCCCCceee
Q 018336 207 AYDLIKDEWTELA--RMTQERDECEAVVIGSEFWVVSGYKTER-QGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVG 283 (358)
Q Consensus 207 ~yd~~t~~W~~~~--~~p~~~~~~~~~~~~~~lyv~gG~~~~~-~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~ 283 (358)
.||..+++|+++. .-|.+|++|.+++...+|++|||+.... +..|.+++++||+++-+|+.+.. +...+.+|+.+.
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~PtpRSGcq 236 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGPTPRSGCQ 236 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCCCCCCcce
Confidence 9999999999986 5688999999999999999999997653 34688999999999999999997 443456665544
Q ss_pred eeecCccCceeccccceeeceEEEEe-CCeEEEECCCCCCCC----------ceEEEEECCC-----CceEee----cCC
Q 018336 284 VGREGKLFCWAETEAAVQFGTCRVEL-GGCTLVTGSGYQGGP----------QEFYVVEGRN-----GKFRKF----DVP 343 (358)
Q Consensus 284 ~~~d~~~~~W~~lp~~~r~~~~~~~~-~~~i~v~gG~~~~~~----------~~i~~yd~~~-----~~W~~~----~~p 343 (358)
+.+. +|.|||.||+..... +++|++++.. -.|.++ .-|
T Consensus 237 ----------------------~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP 294 (521)
T KOG1230|consen 237 ----------------------FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP 294 (521)
T ss_pred ----------------------EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC
Confidence 4545 999999999974211 8999999998 568888 356
Q ss_pred CCccCc
Q 018336 344 AEYKGL 349 (358)
Q Consensus 344 ~~~~~~ 349 (358)
.++.++
T Consensus 295 spRsgf 300 (521)
T KOG1230|consen 295 SPRSGF 300 (521)
T ss_pred CCCCce
Confidence 667666
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=8.8e-21 Score=166.61 Aligned_cols=237 Identities=14% Similarity=0.209 Sum_probs=175.4
Q ss_pred CCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe---CCCCCCCceeeeeEEE
Q 018336 109 PVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR---GKNMPDNRSFFAAGEL 185 (358)
Q Consensus 109 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~---~~~~~~~~~~~~~~~~ 185 (358)
+..-.|+++.....|-...++.|.++++...|.+|||-+..- .+++.+||..+|+|.. ..++|.+-..|+.+..
T Consensus 14 ~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGi---iDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvcd 90 (830)
T KOG4152|consen 14 KNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGI---IDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCD 90 (830)
T ss_pred hcccceEEEecccCCCCCccccchheeeeeeEEEecCCcccc---hhhhhhhccccceeecchhcCCCCCchhhcceEec
Confidence 344578887544333222366788999999999999865433 6899999999999975 3578888888899889
Q ss_pred CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC-------CCccCcCceeEEEECCEEEEEeCcccCCCC------cee
Q 018336 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA-------RMTQERDECEAVVIGSEFWVVSGYKTERQG------IFD 252 (358)
Q Consensus 186 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-------~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~------~~~ 252 (358)
+.+||+|||..+.+.+.++++.+...-=.|+++. .+|.+|.+|+...++++-|+|||...+.++ .|+
T Consensus 91 GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYL 170 (830)
T KOG4152|consen 91 GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYL 170 (830)
T ss_pred CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhh
Confidence 9999999999888887777754444444566663 468899999999999999999998765432 578
Q ss_pred eeeEEEECCCC----ceEEcCCccccCCCCCceeee----------------------------eecCccCce-----ec
Q 018336 253 ESAESYQLGTG----EWKRAENAWKLSQCPRSNVGV----------------------------GREGKLFCW-----AE 295 (358)
Q Consensus 253 ~~i~~yd~~~~----~W~~~~~~p~~~~~~~~~~~~----------------------------~~d~~~~~W-----~~ 295 (358)
++++..++..+ .|......- ..+.+|-.+.. .+|.++.+| .-
T Consensus 171 nDlY~leL~~Gsgvv~W~ip~t~G-v~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G 249 (830)
T KOG4152|consen 171 NDLYILELRPGSGVVAWDIPITYG-VLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSG 249 (830)
T ss_pred cceEEEEeccCCceEEEecccccC-CCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccC
Confidence 89999888754 487654311 11233433322 567888899 33
Q ss_pred cccceeeceEEEEeCCeEEEECCCCC----CC-------C----ceEEEEECCCCceEee--------cCCCCccCc
Q 018336 296 TEAAVQFGTCRVELGGCTLVTGSGYQ----GG-------P----QEFYVVEGRNGKFRKF--------DVPAEYKGL 349 (358)
Q Consensus 296 lp~~~r~~~~~~~~~~~i~v~gG~~~----~~-------~----~~i~~yd~~~~~W~~~--------~~p~~~~~~ 349 (358)
+++.+|.-|++..++|++|||||+-- +. . +.+-++++++.+|+.+ .+|.++.+|
T Consensus 250 ~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGH 326 (830)
T KOG4152|consen 250 VAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGH 326 (830)
T ss_pred CCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccc
Confidence 56778999999999999999999741 10 0 5677889999999988 367777777
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=8.7e-19 Score=154.19 Aligned_cols=238 Identities=14% Similarity=0.211 Sum_probs=174.3
Q ss_pred ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecC---CCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCC
Q 018336 76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLG---PVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYS 152 (358)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~ 152 (358)
-.+++.+|||.+.+. ...+.+||..+++|..-. ++|.+ ...++.++.+.+||+|||+.... +
T Consensus 41 ikELiviFGGGNEGi----------iDELHvYNTatnqWf~PavrGDiPpg----cAA~GfvcdGtrilvFGGMvEYG-k 105 (830)
T KOG4152|consen 41 IKELIVIFGGGNEGI----------IDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCDGTRILVFGGMVEYG-K 105 (830)
T ss_pred eeeeEEEecCCcccc----------hhhhhhhccccceeecchhcCCCCCc----hhhcceEecCceEEEEccEeeec-c
Confidence 456777888876653 357899999999997542 23321 23456778899999999986443 3
Q ss_pred CcceeEEEECCCCcEEeCC-------CCCCCceeeeeEEECCEEEEEcCcCCC--------CCCCCeEEEEECCCC----
Q 018336 153 PVSHVFVYDFTTRRWTRGK-------NMPDNRSFFAAGELNGRVIIAGGHDEN--------KTALSSAWAYDLIKD---- 213 (358)
Q Consensus 153 ~~~~~~~yd~~t~~W~~~~-------~~~~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~t~---- 213 (358)
..+++|........|+++. ++|-||-.|+...++++-|+|||...+ ..+++++++.++..+
T Consensus 106 YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv 185 (830)
T KOG4152|consen 106 YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVV 185 (830)
T ss_pred ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceE
Confidence 4678877777777788863 367889999999999999999996432 235889999988744
Q ss_pred ceEec---CCCccCcCceeEEEE------CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee
Q 018336 214 EWTEL---ARMTQERDECEAVVI------GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV 284 (358)
Q Consensus 214 ~W~~~---~~~p~~~~~~~~~~~------~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~ 284 (358)
.|... ...|.+|..|.++.+ -.++||+||..+.. +.++|.+|+++.+|.+.... ...+.+|+.+..
T Consensus 186 ~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~~-G~~PlPRSLHsa 260 (830)
T KOG4152|consen 186 AWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSLS-GVAPLPRSLHSA 260 (830)
T ss_pred EEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeeccccccc-CCCCCCcccccc
Confidence 48764 367889999998866 23699999998776 78999999999999987532 112355555433
Q ss_pred -------------------------------------eecCccCceecc---------ccceeeceEEEEeCCeEEEECC
Q 018336 285 -------------------------------------GREGKLFCWAET---------EAAVQFGTCRVELGGCTLVTGS 318 (358)
Q Consensus 285 -------------------------------------~~d~~~~~W~~l---------p~~~r~~~~~~~~~~~i~v~gG 318 (358)
.+|..++.|..| -+..|.+|.++.++.++|+-.|
T Consensus 261 ~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSG 340 (830)
T KOG4152|consen 261 TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSG 340 (830)
T ss_pred eeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEec
Confidence 678889999332 2234688999999999999999
Q ss_pred CCCCCC--------ceEEEEECC
Q 018336 319 GYQGGP--------QEFYVVEGR 333 (358)
Q Consensus 319 ~~~~~~--------~~i~~yd~~ 333 (358)
.+.-.. .++|.+|.+
T Consensus 341 RDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 341 RDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred cchhhHhhccccchhhhhhhccc
Confidence 863221 566766643
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=2.2e-16 Score=133.92 Aligned_cols=227 Identities=17% Similarity=0.236 Sum_probs=160.0
Q ss_pred eEEEEeC--CCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCC---CCCcceeEEEECCCCcEEeCCC-CCCC
Q 018336 103 GVTVFDP--VSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPAS---YSPVSHVFVYDFTTRRWTRGKN-MPDN 176 (358)
Q Consensus 103 ~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~---~~~~~~~~~yd~~t~~W~~~~~-~~~~ 176 (358)
.++..|. ....|+++...|... +.....+.++++||++||..... -+..+++++|||.+|+|+++.. .|..
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~~---rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~g 135 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGGA---RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTG 135 (381)
T ss_pred cceehhhhcCCCCceEcccCCCcc---cccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccc
Confidence 4445444 446899999988654 44557788999999999975332 2356899999999999999854 4556
Q ss_pred ceeeeeEEECC-EEEEEcCcCCC---------------------------------CCCCCeEEEEECCCCceEecCCCc
Q 018336 177 RSFFAAGELNG-RVIIAGGHDEN---------------------------------KTALSSAWAYDLIKDEWTELARMT 222 (358)
Q Consensus 177 ~~~~~~~~~~~-~iyv~GG~~~~---------------------------------~~~~~~~~~yd~~t~~W~~~~~~p 222 (358)
...+..+.+++ .||++||++.. ......+..|+++++.|+.+...|
T Consensus 136 l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p 215 (381)
T COG3055 136 LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP 215 (381)
T ss_pred cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc
Confidence 67777777877 99999997642 112457899999999999998777
Q ss_pred c-CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECC--CCceEEcCCccccCCCCCceeee---------------
Q 018336 223 Q-ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLG--TGEWKRAENAWKLSQCPRSNVGV--------------- 284 (358)
Q Consensus 223 ~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~--~~~W~~~~~~p~~~~~~~~~~~~--------------- 284 (358)
. ++++.+.+.-++++.++-|+..... ....+..++.. .-+|..+..+|.+.......+.-
T Consensus 216 f~~~aGsa~~~~~n~~~lInGEiKpGL--Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GG 293 (381)
T COG3055 216 FYGNAGSAVVIKGNKLTLINGEIKPGL--RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGG 293 (381)
T ss_pred ccCccCcceeecCCeEEEEcceecCCc--cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecC
Confidence 6 5566555566777999988875542 23445556665 55899998877543222211111
Q ss_pred ----------------------------eecCccCce---eccccceeeceEEEEeCCeEEEECCCCCCCC--ceEEEEE
Q 018336 285 ----------------------------GREGKLFCW---AETEAAVQFGTCRVELGGCTLVTGSGYQGGP--QEFYVVE 331 (358)
Q Consensus 285 ----------------------------~~d~~~~~W---~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~--~~i~~yd 331 (358)
+|=...+.| .+||. ...+...+..++.||+|||+++++. ..++.+-
T Consensus 294 AnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~-~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 294 ANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ-GLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred CCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC-CccceEEEecCCcEEEEccccCCCeeeeeEEEEE
Confidence 333348899 77887 4567777889999999999998876 5555554
Q ss_pred CCCC
Q 018336 332 GRNG 335 (358)
Q Consensus 332 ~~~~ 335 (358)
...+
T Consensus 373 ~~gk 376 (381)
T COG3055 373 WDGK 376 (381)
T ss_pred EcCc
Confidence 4433
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.60 E-value=8.1e-15 Score=124.51 Aligned_cols=222 Identities=16% Similarity=0.190 Sum_probs=149.6
Q ss_pred ecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCC--CcEEeCCCCCC-CceeeeeEEECCEEEEE
Q 018336 116 RLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTT--RRWTRGKNMPD-NRSFFAAGELNGRVIIA 192 (358)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~-~~~~~~~~~~~~~iyv~ 192 (358)
.+|.+|.+-.. . +.+.+++.+||--|..+ ...++.|... ..|+++...|. +|....+++++++||++
T Consensus 29 ~lPdlPvg~Kn---G-~Ga~ig~~~YVGLGs~G------~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvF 98 (381)
T COG3055 29 QLPDLPVGFKN---G-AGALIGDTVYVGLGSAG------TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVF 98 (381)
T ss_pred cCCCCCccccc---c-ccceecceEEEEeccCC------ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEe
Confidence 45666664321 1 44566789998877443 3567777654 58999998874 57888888999999999
Q ss_pred cCcCCCCC----CCCeEEEEECCCCceEecC-CCccCcCceeEEEECC-EEEEEeCcccCCCCceeeeeEEEECCCCceE
Q 018336 193 GGHDENKT----ALSSAWAYDLIKDEWTELA-RMTQERDECEAVVIGS-EFWVVSGYKTERQGIFDESAESYQLGTGEWK 266 (358)
Q Consensus 193 GG~~~~~~----~~~~~~~yd~~t~~W~~~~-~~p~~~~~~~~~~~~~-~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~ 266 (358)
||...... ..++++.||+.+++|+++. ..|....++..+.+++ ++|++||.+....+.++.++-.-+-+...|.
T Consensus 99 gG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~ 178 (381)
T COG3055 99 GGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD 178 (381)
T ss_pred eccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence 99865432 3689999999999999987 5577777888888888 8999999886654444444444444444444
Q ss_pred EcCCccccCCCCCce---eeeeecCccCce---eccccceeeceEEEEeCCeEEEECCCCCCCC--ceEEEEECC--CCc
Q 018336 267 RAENAWKLSQCPRSN---VGVGREGKLFCW---AETEAAVQFGTCRVELGGCTLVTGSGYQGGP--QEFYVVEGR--NGK 336 (358)
Q Consensus 267 ~~~~~p~~~~~~~~~---~~~~~d~~~~~W---~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~--~~i~~yd~~--~~~ 336 (358)
.+...-...+..-.+ -...||+.++.| ...|...+.+.+++.-+|++.+|-|+-..+. ..++++|.. ..+
T Consensus 179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~ 258 (381)
T COG3055 179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLK 258 (381)
T ss_pred HHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCcee
Confidence 443211000000111 112577777777 3445556677777777888999999876664 667777665 455
Q ss_pred eEee-cCCCCcc
Q 018336 337 FRKF-DVPAEYK 347 (358)
Q Consensus 337 W~~~-~~p~~~~ 347 (358)
|..+ .+|.+..
T Consensus 259 w~~l~~lp~~~~ 270 (381)
T COG3055 259 WLKLSDLPAPIG 270 (381)
T ss_pred eeeccCCCCCCC
Confidence 9999 7776544
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.40 E-value=1.8e-13 Score=120.85 Aligned_cols=210 Identities=15% Similarity=0.203 Sum_probs=145.1
Q ss_pred CCCCCeeecCCCCC------CCCCCCceeEEEEECC--EEEEEcCcCCCCCCCcceeEEEECCCCcEEeC---CCCCCCc
Q 018336 109 PVSLTWDRLGPVPE------YPAGLPLFCQVASSQG--KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRG---KNMPDNR 177 (358)
Q Consensus 109 ~~~~~W~~~~~~~~------~~~~~~~~~~~~~~~~--~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~ 177 (358)
+..-+|.++++-.. ...+.+.+|.++...+ .||++||+++.. .+.++|.|+...+.|..+ ...|..|
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ--DLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch--hHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 45567877765331 1223356778887754 899999998765 388999999999999886 3578899
Q ss_pred eeeeeEEEC--CEEEEEcCcCCC-----CCCCCeEEEEECCCCceEecC------CCccCcCceeEEEECCE--EEEEeC
Q 018336 178 SFFAAGELN--GRVIIAGGHDEN-----KTALSSAWAYDLIKDEWTELA------RMTQERDECEAVVIGSE--FWVVSG 242 (358)
Q Consensus 178 ~~~~~~~~~--~~iyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~~------~~p~~~~~~~~~~~~~~--lyv~gG 242 (358)
.+|-++... .++|+.|-+-.. ....++++.||..++.|.-+. .=|...+.|.+++..++ +||+||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 999988754 489999976432 123578999999999999875 23566778889999888 999999
Q ss_pred cccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC
Q 018336 243 YKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG 322 (358)
Q Consensus 243 ~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~ 322 (358)
.....+......++.||.....|..+..-.... .+. +.. ........+-.+.-++.+|++||....
T Consensus 394 r~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~-~~v--vE~-----------~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 394 RILTCNEPQFSGLYAFNCQCQTWKLLREDSCNA-GPV--VED-----------IQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred eeccCCCccccceEEEecCCccHHHHHHHHhhc-Ccc--hhH-----------HHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 876544344678999999999999887532110 110 000 000011233446678899999997655
Q ss_pred CC-ceEEEEECCC
Q 018336 323 GP-QEFYVVEGRN 334 (358)
Q Consensus 323 ~~-~~i~~yd~~~ 334 (358)
.. +-.+.||+..
T Consensus 460 ~El~L~f~y~I~~ 472 (723)
T KOG2437|consen 460 TELNLFFSYDIDS 472 (723)
T ss_pred eEEeehhcceecc
Confidence 43 4445565443
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.29 E-value=1.1e-11 Score=77.89 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=45.7
Q ss_pred CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCc
Q 018336 176 NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQER 225 (358)
Q Consensus 176 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~ 225 (358)
||..+++++++++||++||........+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 58889999999999999999885567899999999999999999999876
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.24 E-value=3.3e-11 Score=75.64 Aligned_cols=49 Identities=29% Similarity=0.383 Sum_probs=42.9
Q ss_pred CceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCc
Q 018336 128 PLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR 177 (358)
Q Consensus 128 ~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~ 177 (358)
+..+++++++++||++||.... ....+++++||+.|++|+.+++||.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 4567889999999999998764 346889999999999999999999887
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.09 E-value=1.4e-10 Score=71.85 Aligned_cols=47 Identities=32% Similarity=0.448 Sum_probs=42.8
Q ss_pred CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCc
Q 018336 176 NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMT 222 (358)
Q Consensus 176 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p 222 (358)
+|..+++++++++||++||.+......+.+++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 58899999999999999999986677899999999999999999886
No 33
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.02 E-value=5.7e-10 Score=99.05 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=118.6
Q ss_pred CCCCcEEeCCC----------CCCCceeeeeEEEC--CEEEEEcCcCCCCCCCCeEEEEECCCCceEecC---CCccCcC
Q 018336 162 FTTRRWTRGKN----------MPDNRSFFAAGELN--GRVIIAGGHDENKTALSSAWAYDLIKDEWTELA---RMTQERD 226 (358)
Q Consensus 162 ~~t~~W~~~~~----------~~~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~ 226 (358)
+.+-+|.++++ -|..|.+|.++... +.+|+.||+++. ..+.+++.|+...+.|..+. ..|..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 45667887653 24568889998865 489999999986 45789999999999999875 5788999
Q ss_pred ceeEEEECC--EEEEEeCcccCCCC---ceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceecccccee
Q 018336 227 ECEAVVIGS--EFWVVSGYKTERQG---IFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQ 301 (358)
Q Consensus 227 ~~~~~~~~~--~lyv~gG~~~~~~~---~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r 301 (358)
.|.+|.... ++|++|-+-+.... ....++|+||..++.|..+..-... -+..+ .-
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~----dGGP~----------------~v 374 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAA----DGGPK----------------LV 374 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccc----cCCcc----------------ee
Confidence 888886555 89999965433211 2356899999999999988743211 11111 13
Q ss_pred eceEEEEeCCe--EEEECCCCCCCC----ceEEEEECCCCceEee
Q 018336 302 FGTCRVELGGC--TLVTGSGYQGGP----QEFYVVEGRNGKFRKF 340 (358)
Q Consensus 302 ~~~~~~~~~~~--i~v~gG~~~~~~----~~i~~yd~~~~~W~~~ 340 (358)
+.|++++.+.+ |||+||..-.-. .++|.||.....|+.+
T Consensus 375 fDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 375 FDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred ecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 66778999988 999999864432 7899999999999886
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.00 E-value=1.4e-09 Score=67.74 Aligned_cols=49 Identities=35% Similarity=0.596 Sum_probs=43.0
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL 185 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 185 (358)
+++|||+||........++++|+||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 5789999999844446789999999999999999999999999998763
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.96 E-value=1.8e-09 Score=66.79 Aligned_cols=47 Identities=28% Similarity=0.474 Sum_probs=40.9
Q ss_pred CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcc
Q 018336 224 ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW 272 (358)
Q Consensus 224 ~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p 272 (358)
+|..+++++++++||++||.... ....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN--NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST--SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeeccc--CceeeeEEEEeCCCCEEEEcCCCC
Confidence 47889999999999999999872 346899999999999999999875
No 36
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.96 E-value=1.4e-07 Score=80.10 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=105.8
Q ss_pred EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce---e--eeeEEE----CCEEEEEcCcCCCCCCCCeE
Q 018336 135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS---F--FAAGEL----NGRVIIAGGHDENKTALSSA 205 (358)
Q Consensus 135 ~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~---~--~~~~~~----~~~iyv~GG~~~~~~~~~~~ 205 (358)
.++|.|++..+ ..+.++||.|++|+.+|+.+.++. . .+.+.. +.++..+...... .....+
T Consensus 3 sCnGLlc~~~~---------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~ 72 (230)
T TIGR01640 3 PCDGLICFSYG---------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEH 72 (230)
T ss_pred ccceEEEEecC---------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccE
Confidence 45777765532 379999999999999986554311 1 111111 2345555432111 134579
Q ss_pred EEEECCCCceEecCCCccC-cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEE-cCCccccCCCCCceee
Q 018336 206 WAYDLIKDEWTELARMTQE-RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKR-AENAWKLSQCPRSNVG 283 (358)
Q Consensus 206 ~~yd~~t~~W~~~~~~p~~-~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~-~~~~p~~~~~~~~~~~ 283 (358)
++|+..+++|+.+...+.. ......+.+||.+|.+....... ....|..||+.+++|.. ++ +|......
T Consensus 73 ~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~-~P~~~~~~----- 143 (230)
T TIGR01640 73 QVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIP-LPCGNSDS----- 143 (230)
T ss_pred EEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeee-cCcccccc-----
Confidence 9999999999998743321 11223778999999997443211 11379999999999995 43 33211000
Q ss_pred eeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEE-CCCCceEee-cCC
Q 018336 284 VGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVE-GRNGKFRKF-DVP 343 (358)
Q Consensus 284 ~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd-~~~~~W~~~-~~p 343 (358)
.....++.++|+|.++........-+||+.+ -+.++|+++ .++
T Consensus 144 -----------------~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~ 188 (230)
T TIGR01640 144 -----------------VDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVP 188 (230)
T ss_pred -----------------ccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEc
Confidence 1123457788999988764322225788885 446679988 554
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.92 E-value=4.6e-09 Score=65.43 Aligned_cols=47 Identities=30% Similarity=0.591 Sum_probs=41.1
Q ss_pred CceeeeeEEECCEEEEEcCc--CCCCCCCCeEEEEECCCCceEecCCCc
Q 018336 176 NRSFFAAGELNGRVIIAGGH--DENKTALSSAWAYDLIKDEWTELARMT 222 (358)
Q Consensus 176 ~~~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~p 222 (358)
+|..|++++++++||++||+ .......+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 57889999999999999999 444456889999999999999998775
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.88 E-value=6.1e-09 Score=64.85 Aligned_cols=47 Identities=28% Similarity=0.625 Sum_probs=42.2
Q ss_pred CCEEEEEcCcC-CCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE
Q 018336 186 NGRVIIAGGHD-ENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV 232 (358)
Q Consensus 186 ~~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~ 232 (358)
++++||+||.+ ......+++++||+.+++|++++++|.+|.+|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 57899999998 445678999999999999999999999999999875
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.88 E-value=2.5e-09 Score=66.74 Aligned_cols=47 Identities=26% Similarity=0.575 Sum_probs=31.9
Q ss_pred CceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCc
Q 018336 176 NRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMT 222 (358)
Q Consensus 176 ~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p 222 (358)
||.+|+++.+ ++.||++||.+..+...+++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 5888999988 5899999999887678899999999999999998877
No 40
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.86 E-value=1.7e-06 Score=73.46 Aligned_cols=204 Identities=10% Similarity=0.037 Sum_probs=117.3
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCc-eeEEEE---EC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC-
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPL-FCQVAS---SQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN- 176 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~-~~~~~~---~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~- 176 (358)
.+.++||.|++|..+|+.+.+...... ..+... .+ -+|..+...... .....+.+|+..+++|+.+...+..
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEeCCCCccccccCCCCc
Confidence 688999999999999875542111011 011111 11 144444332111 1235789999999999998743322
Q ss_pred ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEe-cCCCccCc----CceeEEEECCEEEEEeCcccCCCCce
Q 018336 177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE-LARMTQER----DECEAVVIGSEFWVVSGYKTERQGIF 251 (358)
Q Consensus 177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~~----~~~~~~~~~~~lyv~gG~~~~~~~~~ 251 (358)
......+.++|.+|.+...... .....+..||..+++|+. ++ +|... ....++.++|+|.++.......
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---- 166 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN---- 166 (230)
T ss_pred cccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCC----
Confidence 1122367789999998743321 111279999999999995 54 34332 2345678899998887543211
Q ss_pred eeeeEEEE-CCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEE
Q 018336 252 DESAESYQ-LGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVV 330 (358)
Q Consensus 252 ~~~i~~yd-~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~y 330 (358)
.-.|++.+ .....|+++-.++... .... .. ......+..+++|++....... ..+..|
T Consensus 167 ~~~IWvl~d~~~~~W~k~~~i~~~~-~~~~----------------~~--~~~~~~~~~~g~I~~~~~~~~~--~~~~~y 225 (230)
T TIGR01640 167 NFDLWVLNDAGKQEWSKLFTVPIPP-LPDL----------------VD--DNFLSGFTDKGEIVLCCEDENP--FYIFYY 225 (230)
T ss_pred cEEEEEECCCCCCceeEEEEEcCcc-hhhh----------------hh--heeEeEEeeCCEEEEEeCCCCc--eEEEEE
Confidence 23566664 3355798766553210 0000 00 0113356678999988764111 348899
Q ss_pred ECCCC
Q 018336 331 EGRNG 335 (358)
Q Consensus 331 d~~~~ 335 (358)
|++++
T Consensus 226 ~~~~~ 230 (230)
T TIGR01640 226 NVGEN 230 (230)
T ss_pred eccCC
Confidence 99875
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.84 E-value=1.1e-08 Score=63.76 Aligned_cols=49 Identities=22% Similarity=0.378 Sum_probs=40.9
Q ss_pred CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcc
Q 018336 224 ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW 272 (358)
Q Consensus 224 ~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p 272 (358)
+|..|++++++++|||+||..........+++++||+++++|+.++.+|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 4788999999999999999933333456889999999999999998763
No 42
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.76 E-value=9.3e-09 Score=63.39 Aligned_cols=42 Identities=29% Similarity=0.529 Sum_probs=36.8
Q ss_pred CCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHH
Q 018336 27 VPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYY 68 (358)
Q Consensus 27 ~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~ 68 (358)
|..||+|++.+||..|+..++.++..|||+|+.++.++.+++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 678999999999999999999999999999999998886554
No 43
>smart00612 Kelch Kelch domain.
Probab=98.73 E-value=2.3e-08 Score=61.71 Aligned_cols=47 Identities=30% Similarity=0.520 Sum_probs=41.1
Q ss_pred EEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336 188 RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS 235 (358)
Q Consensus 188 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~ 235 (358)
+||++||.... ...+++++||+.+++|+.+++||.+|..+++++++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998753 457899999999999999999999999999888775
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.72 E-value=1.8e-08 Score=62.86 Aligned_cols=43 Identities=14% Similarity=0.473 Sum_probs=29.0
Q ss_pred eeceEEEEe-CCeEEEECCCCCCCC--ceEEEEECCCCceEee-cCC
Q 018336 301 QFGTCRVEL-GGCTLVTGSGYQGGP--QEFYVVEGRNGKFRKF-DVP 343 (358)
Q Consensus 301 r~~~~~~~~-~~~i~v~gG~~~~~~--~~i~~yd~~~~~W~~~-~~p 343 (358)
|.+++++.+ +++|||+||...... +++|+||+++++|+++ .+|
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred cceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 667777777 599999999987643 8999999999999998 555
No 45
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.71 E-value=1.4e-05 Score=71.06 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=34.4
Q ss_pred CCCCCcHHHHHHHhccC-CcchhhhHHhhcHhHHHhhcC
Q 018336 26 LVPGLPEEISLECLTRL-HYSTHRVATRVSRRWRQLIQS 63 (358)
Q Consensus 26 ~~~~Lp~d~~~~il~rl-p~~~~~~~~~v~k~w~~l~~s 63 (358)
.|+.||+|++..|..|| ...++.+++.||++||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 58999999999999999 577899999999999987764
No 46
>smart00612 Kelch Kelch domain.
Probab=98.71 E-value=2.9e-08 Score=61.24 Aligned_cols=47 Identities=38% Similarity=0.603 Sum_probs=40.4
Q ss_pred EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECC
Q 018336 139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNG 187 (358)
Q Consensus 139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~ 187 (358)
+||++||.... ...+++++||+.+++|+.+++|+.+|..++++.+++
T Consensus 1 ~iyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG--QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC--ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998642 347899999999999999999999999999887764
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.65 E-value=1.8e-06 Score=72.47 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=102.8
Q ss_pred cceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC----CceEecC-CCccCcCce
Q 018336 154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK----DEWTELA-RMTQERDEC 228 (358)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~~~~~ 228 (358)
.....+||+.|++++.+....-..+...+..-+|++.++||.... ...+..|++.+ ..|.+.+ .|..+|...
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 345688999999999876433333333333358999999998653 35678888865 6798876 588899988
Q ss_pred eEEE-ECCEEEEEeCcccCCCCceeeeeEEEECCC-C-----ceEEcCCccccCCCCCceeeeeecCccCceecccccee
Q 018336 229 EAVV-IGSEFWVVSGYKTERQGIFDESAESYQLGT-G-----EWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQ 301 (358)
Q Consensus 229 ~~~~-~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~-~-----~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r 301 (358)
+++. -||+++|+||.... ..+ |-|.. . .|..+...... .+. .-
T Consensus 122 T~~~L~DG~vlIvGG~~~~-------t~E-~~P~~~~~~~~~~~~~l~~~~~~--~~~--------------------nl 171 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNP-------TYE-FWPPKGPGPGPVTLPFLSQTSDT--LPN--------------------NL 171 (243)
T ss_pred cceECCCCCEEEEeCcCCC-------ccc-ccCCccCCCCceeeecchhhhcc--Ccc--------------------cc
Confidence 8774 58899999998622 122 33331 1 11111111000 000 01
Q ss_pred eceEEEEeCCeEEEECCCCCCCCceEEEEECCCCce-Eee-cCCCCccCceeeee
Q 018336 302 FGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKF-RKF-DVPAEYKGLVQSGC 354 (358)
Q Consensus 302 ~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W-~~~-~~p~~~~~~~~~~~ 354 (358)
+.+....-+|+||+++.. .-.+||+.++++ +.+ .+|...+..-.+|.
T Consensus 172 YP~~~llPdG~lFi~an~------~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgs 220 (243)
T PF07250_consen 172 YPFVHLLPDGNLFIFANR------GSIIYDYKTNTVVRTLPDLPGGPRNYPASGS 220 (243)
T ss_pred CceEEEcCCCCEEEEEcC------CcEEEeCCCCeEEeeCCCCCCCceecCCCcc
Confidence 233456678999999985 566789999987 666 78876544433443
No 48
>PLN02772 guanylate kinase
Probab=98.59 E-value=4.4e-07 Score=80.88 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=68.8
Q ss_pred CCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC---CCccCcCceeEEEE-CCEEEEEeCcccCCCCc
Q 018336 175 DNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA---RMTQERDECEAVVI-GSEFWVVSGYKTERQGI 250 (358)
Q Consensus 175 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~ 250 (358)
.++..++++.+++++||+||.++.....+.+++||..+++|.... ..|.+|.+|+++++ +++|+|+++....
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---- 98 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---- 98 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC----
Confidence 377889999999999999998876546789999999999999754 77889999999988 6789999876544
Q ss_pred eeeeeEEEECCC
Q 018336 251 FDESAESYQLGT 262 (358)
Q Consensus 251 ~~~~i~~yd~~~ 262 (358)
..++|.+.+.|
T Consensus 99 -~~~~w~l~~~t 109 (398)
T PLN02772 99 -DDSIWFLEVDT 109 (398)
T ss_pred -ccceEEEEcCC
Confidence 35777777765
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.54 E-value=4.1e-06 Score=70.33 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=99.6
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCC----CcEEeCC-CCCCCc
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTT----RRWTRGK-NMPDNR 177 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~~ 177 (358)
.-..||+.+++++.+..... . .+..++..-+|.+.+.||..+. .+.+-.|++.+ ..|.+.+ .|..+|
T Consensus 47 ~s~~yD~~tn~~rpl~v~td---~-FCSgg~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~~w~e~~~~m~~~R 118 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD---T-FCSGGAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTCDWTESPNDMQSGR 118 (243)
T ss_pred EEEEEecCCCcEEeccCCCC---C-cccCcCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCCCceECcccccCCC
Confidence 45569999999987754322 1 1222334458899999997543 45677888876 6798875 599999
Q ss_pred eeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCC-----CceEecCC----CccCcCceeEEEECCEEEEEeCcccCC
Q 018336 178 SFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIK-----DEWTELAR----MTQERDECEAVVIGSEFWVVSGYKTER 247 (358)
Q Consensus 178 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t-----~~W~~~~~----~p~~~~~~~~~~~~~~lyv~gG~~~~~ 247 (358)
.+.++..+ +|+++|+||.... ..+.+.... ..|..+.. .+...+-+..+.-+|+||+++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC----
Confidence 99999887 7999999997732 233333321 12222221 23334444556679999999864
Q ss_pred CCceeeeeEEEECCCCce-EEcCCcccc
Q 018336 248 QGIFDESAESYQLGTGEW-KRAENAWKL 274 (358)
Q Consensus 248 ~~~~~~~i~~yd~~~~~W-~~~~~~p~~ 274 (358)
....||+.++++ ..++.+|..
T Consensus 190 ------~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 ------GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred ------CcEEEeCCCCeEEeeCCCCCCC
Confidence 346799999987 788888753
No 50
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.46 E-value=8.2e-08 Score=59.52 Aligned_cols=44 Identities=32% Similarity=0.488 Sum_probs=37.2
Q ss_pred CCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHHHH
Q 018336 27 VPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQR 70 (358)
Q Consensus 27 ~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~~~ 70 (358)
|..||+|++.+|+.+|+..++.+++.|||+|++++.++.+....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56799999999999999999999999999999999999876543
No 51
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.42 E-value=2.5e-07 Score=55.17 Aligned_cols=39 Identities=46% Similarity=0.765 Sum_probs=36.5
Q ss_pred CcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHH
Q 018336 30 LPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYY 68 (358)
Q Consensus 30 Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~ 68 (358)
||+|++.+|+.+|+..++.+++.|||+|+.++..+.+.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887654
No 52
>PF13854 Kelch_5: Kelch motif
Probab=98.40 E-value=9.5e-07 Score=52.75 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=35.7
Q ss_pred CCCCceeeeeEEECCEEEEEcCcCC-CCCCCCeEEEEECCC
Q 018336 173 MPDNRSFFAAGELNGRVIIAGGHDE-NKTALSSAWAYDLIK 212 (358)
Q Consensus 173 ~~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t 212 (358)
+|.+|..|++++++++||++||.+. .....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999984 556789999999976
No 53
>PLN02772 guanylate kinase
Probab=98.31 E-value=5.4e-06 Score=74.03 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=62.9
Q ss_pred cCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceee
Q 018336 223 QERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQF 302 (358)
Q Consensus 223 ~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~ 302 (358)
.++..+.++.+++++||+||.... +...+.+++||..+.+|.....+-. +|.+|.
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~--~~~~~~v~i~D~~t~~W~~P~V~G~-----------------------~P~~r~ 77 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEG--NTLSIGVQILDKITNNWVSPIVLGT-----------------------GPKPCK 77 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCC--ccccceEEEEECCCCcEecccccCC-----------------------CCCCCC
Confidence 366778899999999999997652 3357899999999999998776521 122355
Q ss_pred ceEEEEe-CCeEEEECCCCCCCCceEEEEECCC
Q 018336 303 GTCRVEL-GGCTLVTGSGYQGGPQEFYVVEGRN 334 (358)
Q Consensus 303 ~~~~~~~-~~~i~v~gG~~~~~~~~i~~yd~~~ 334 (358)
+++++++ +++|+|+++..... .++|.+..++
T Consensus 78 GhSa~v~~~~rilv~~~~~~~~-~~~w~l~~~t 109 (398)
T PLN02772 78 GYSAVVLNKDRILVIKKGSAPD-DSIWFLEVDT 109 (398)
T ss_pred cceEEEECCceEEEEeCCCCCc-cceEEEEcCC
Confidence 5666766 68999998754332 7888887654
No 54
>PF13854 Kelch_5: Kelch motif
Probab=98.30 E-value=2.3e-06 Score=51.08 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=35.2
Q ss_pred CccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336 221 MTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT 262 (358)
Q Consensus 221 ~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~ 262 (358)
+|.+|.+|++++++++||++||... ......+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 4788999999999999999999985 3345689999999876
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.03 E-value=4.4e-05 Score=65.51 Aligned_cols=43 Identities=16% Similarity=0.403 Sum_probs=39.5
Q ss_pred CCCCc----HHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHHH
Q 018336 27 VPGLP----EEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQ 69 (358)
Q Consensus 27 ~~~Lp----~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~~ 69 (358)
+..|| +++.+.||+.|...+++.+.+|||+|+.+++.+..++.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 45689 99999999999999999999999999999999988654
No 56
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.93 E-value=0.00095 Score=59.98 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=90.8
Q ss_pred ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCC----CeEEEE--E
Q 018336 136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTAL----SSAWAY--D 209 (358)
Q Consensus 136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~----~~~~~y--d 209 (358)
.+.+|+.++.. ....+||..|..-...|.+..+.....++.++++||++.......... ..++++ +
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 48899998663 358999999999988888888887788888899999998764332110 144554 4
Q ss_pred C--------CCCceEecCCCccCcCc-------eeEEEE-CCEEEEEe-CcccCCCCceeeeeEEEECCCCceEEcCC--
Q 018336 210 L--------IKDEWTELARMTQERDE-------CEAVVI-GSEFWVVS-GYKTERQGIFDESAESYQLGTGEWKRAEN-- 270 (358)
Q Consensus 210 ~--------~t~~W~~~~~~p~~~~~-------~~~~~~-~~~lyv~g-G~~~~~~~~~~~~i~~yd~~~~~W~~~~~-- 270 (358)
. ..-.|+.+++.|..... .+-+++ +..|+|.. +.. ...++||.++.+|+.+..
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeecccee
Confidence 1 23368888876654332 233455 44588743 221 236899999999999986
Q ss_pred ccccCCCCCceeeeeecCccCce
Q 018336 271 AWKLSQCPRSNVGVGREGKLFCW 293 (358)
Q Consensus 271 ~p~~~~~~~~~~~~~~d~~~~~W 293 (358)
||..+ + ..|+++.+.|
T Consensus 219 LPF~G---~----a~y~~el~~W 234 (342)
T PF07893_consen 219 LPFHG---Q----AEYVPELDLW 234 (342)
T ss_pred cCcCC---c----cEECCCcCeE
Confidence 55322 2 2477788888
No 57
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.56 E-value=0.016 Score=49.01 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=71.5
Q ss_pred EEEEE-cCcCCCCCCCcceeEEEECCCCc--------EE---eCCCCCCCceeeeeEEE----CCEEEEEcCcCCCC---
Q 018336 139 KLVVM-GGWDPASYSPVSHVFVYDFTTRR--------WT---RGKNMPDNRSFFAAGEL----NGRVIIAGGHDENK--- 199 (358)
Q Consensus 139 ~lyv~-Gg~~~~~~~~~~~~~~yd~~t~~--------W~---~~~~~~~~~~~~~~~~~----~~~iyv~GG~~~~~--- 199 (358)
.-|++ ||..+ +.+-.+.+|+....+.. .+ .+..+|.+|+.|++.++ +...+++||.+.-.
T Consensus 39 ~~YlIHGGrTP-NNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 39 EQYLIHGGRTP-NNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eeEEecCCcCC-CcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 45666 45443 33455677777654433 11 13578999999988765 23478889865311
Q ss_pred ----------CCCCeEEEEECCCCceEe--cCCCccCcCceeEEEECCEEEEEeCcccC
Q 018336 200 ----------TALSSAWAYDLIKDEWTE--LARMTQERDECEAVVIGSEFWVVSGYKTE 246 (358)
Q Consensus 200 ----------~~~~~~~~yd~~t~~W~~--~~~~p~~~~~~~~~~~~~~lyv~gG~~~~ 246 (358)
.....|+..|++-+..+. ++.+....+.|.+.+-++.+|++||..-.
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEcc
Confidence 124467888988776653 55677777888888999999999998643
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.56 E-value=0.0066 Score=54.59 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=80.9
Q ss_pred ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCc--eeeeeEEE--EC
Q 018336 185 LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGI--FDESAESY--QL 260 (358)
Q Consensus 185 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~--~~~~i~~y--d~ 260 (358)
.+.+|+.++.. ..+.+||.++..-...|.++.+.....++.++++||++.......... ....++++ ++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 48888888543 448999999999998888877766667778899999998765432110 00033343 31
Q ss_pred ------CC--CceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEe-CCeEEE-ECCCCCCCCceEEEE
Q 018336 261 ------GT--GEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL-GGCTLV-TGSGYQGGPQEFYVV 330 (358)
Q Consensus 261 ------~~--~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~-~~~i~v-~gG~~~~~~~~i~~y 330 (358)
.. -.|+.++..|... ..+.. .+...+.+++ |..|+| +-+.. ..-|.|
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~-~~~~~------------------~~~i~sYavv~g~~I~vS~~~~~----~GTysf 204 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVR-DRRYS------------------DYRITSYAVVDGRTIFVSVNGRR----WGTYSF 204 (342)
T ss_pred ccccccCCCcceEEcCCCCCccc-cCCcc------------------cceEEEEEEecCCeEEEEecCCc----eEEEEE
Confidence 11 2456655543211 00000 0003345566 778888 55432 368999
Q ss_pred ECCCCceEee---cCCC
Q 018336 331 EGRNGKFRKF---DVPA 344 (358)
Q Consensus 331 d~~~~~W~~~---~~p~ 344 (358)
|.++.+|+++ .||.
T Consensus 205 Dt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 205 DTESHEWRKHGDWMLPF 221 (342)
T ss_pred EcCCcceeeccceecCc
Confidence 9999999999 6774
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.34 E-value=0.075 Score=44.96 Aligned_cols=171 Identities=18% Similarity=0.243 Sum_probs=101.3
Q ss_pred ceEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EE-eCCCCCC-
Q 018336 102 YGVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WT-RGKNMPD- 175 (358)
Q Consensus 102 ~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~-~~~~~~~- 175 (358)
..+.++|+.+++ |+.-. +.+ ........++.||+... .+.++.+|..+.+ |+ .....+.
T Consensus 46 ~~l~~~d~~tG~~~W~~~~--~~~-----~~~~~~~~~~~v~v~~~--------~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDL--PGP-----ISGAPVVDGGRVYVGTS--------DGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp SEEEEEETTTSEEEEEEEC--SSC-----GGSGEEEETTEEEEEET--------TSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred CEEEEEECCCCCEEEEeec--ccc-----ccceeeecccccccccc--------eeeeEecccCCcceeeeecccccccc
Confidence 478999998886 55443 321 11234677889988863 2379999987764 87 3433222
Q ss_pred -CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCccCcC--------ceeEEEECCEEEEEeCcc
Q 018336 176 -NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQERD--------ECEAVVIGSEFWVVSGYK 244 (358)
Q Consensus 176 -~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~~~--------~~~~~~~~~~lyv~gG~~ 244 (358)
.......+..++.+|+... ...+.++|+++++ |+.-...+.... ....+..++.+|+..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp STB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred ccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 2233344445777777643 3569999998764 775433433211 123334467888886542
Q ss_pred cCCCCceeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC
Q 018336 245 TERQGIFDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG 322 (358)
Q Consensus 245 ~~~~~~~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~ 322 (358)
.+..+|..+++ |+....-. .......++.||+.. ..
T Consensus 184 ---------~~~~~d~~tg~~~w~~~~~~~------------------------------~~~~~~~~~~l~~~~-~~-- 221 (238)
T PF13360_consen 184 ---------RVVAVDLATGEKLWSKPISGI------------------------------YSLPSVDGGTLYVTS-SD-- 221 (238)
T ss_dssp ---------SEEEEETTTTEEEEEECSS-E------------------------------CECEECCCTEEEEEE-TT--
T ss_pred ---------eEEEEECCCCCEEEEecCCCc------------------------------cCCceeeCCEEEEEe-CC--
Confidence 24566999886 84431110 011345677777777 32
Q ss_pred CCceEEEEECCCCc--eE
Q 018336 323 GPQEFYVVEGRNGK--FR 338 (358)
Q Consensus 323 ~~~~i~~yd~~~~~--W~ 338 (358)
..++.+|+.+++ |+
T Consensus 222 --~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 222 --GRLYALDLKTGKVVWQ 237 (238)
T ss_dssp --TEEEEEETTTTEEEEE
T ss_pred --CEEEEEECCCCCEEeE
Confidence 589999999887 65
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.30 E-value=0.14 Score=47.18 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=109.3
Q ss_pred eEEEEeCCCCC--eeecCCCCCC---C-CCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCC--cEEeCCCCC
Q 018336 103 GVTVFDPVSLT--WDRLGPVPEY---P-AGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR--RWTRGKNMP 174 (358)
Q Consensus 103 ~~~~~d~~~~~--W~~~~~~~~~---~-~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~ 174 (358)
.+.++|..+++ |+.-..-... . .........+..++.||+.+. ...++.+|..|. .|+.-.+
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~-- 149 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--------KGQVYALNAEDGEVAWQTKVA-- 149 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC--------CCEEEEEECCCCCCcccccCC--
Confidence 68899987665 8653221100 0 000112235566888887543 236999999876 4765322
Q ss_pred CCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCcc--CcCceeEEEECCEEEEEeCcccCCCCc
Q 018336 175 DNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQ--ERDECEAVVIGSEFWVVSGYKTERQGI 250 (358)
Q Consensus 175 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~~~~~~~~~~~~~lyv~gG~~~~~~~~ 250 (358)
.+ ...+.++.++.+|+..+ ...++.+|.++++ |+.-...|. .+...+-++.++.+|+..+
T Consensus 150 ~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-------- 213 (394)
T PRK11138 150 GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-------- 213 (394)
T ss_pred Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC--------
Confidence 11 12223456788887532 2469999998775 886443222 1122334456777777543
Q ss_pred eeeeeEEEECCCC--ceEEcCCcccc----------CCCC-----Ccee------eeeecCccC--ceec-cccceeece
Q 018336 251 FDESAESYQLGTG--EWKRAENAWKL----------SQCP-----RSNV------GVGREGKLF--CWAE-TEAAVQFGT 304 (358)
Q Consensus 251 ~~~~i~~yd~~~~--~W~~~~~~p~~----------~~~~-----~~~~------~~~~d~~~~--~W~~-lp~~~r~~~ 304 (358)
...+..+|..++ .|+.-...|.. ...+ +.++ ...+|.++. .|.. ++ ...
T Consensus 214 -~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----~~~ 288 (394)
T PRK11138 214 -NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG----SVN 288 (394)
T ss_pred -CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC----Ccc
Confidence 224677888876 47642211100 0000 0000 014565543 4632 22 112
Q ss_pred EEEEeCCeEEEECCCCCCCCceEEEEECCCCc--eEee
Q 018336 305 CRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK--FRKF 340 (358)
Q Consensus 305 ~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~--W~~~ 340 (358)
..+..+++||+.... ..++.+|+.+++ |+.-
T Consensus 289 ~~~~~~~~vy~~~~~-----g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 289 DFAVDGGRIYLVDQN-----DRVYALDTRGGVELWSQS 321 (394)
T ss_pred CcEEECCEEEEEcCC-----CeEEEEECCCCcEEEccc
Confidence 456678899987654 589999998765 8653
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.20 E-value=0.15 Score=47.13 Aligned_cols=134 Identities=17% Similarity=0.266 Sum_probs=77.6
Q ss_pred eEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCC--C
Q 018336 103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPD--N 176 (358)
Q Consensus 103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~ 176 (358)
.+.++|..+++ |+.-.. .. .....+..++.+|+..+ ...++.+|+.+.+ |+.-...+. .
T Consensus 131 ~l~ald~~tG~~~W~~~~~--~~-----~~ssP~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVA--GE-----ALSRPVVSDGLVLVHTS--------NGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred EEEEEECCCCCCcccccCC--Cc-----eecCCEEECCEEEEECC--------CCEEEEEEccCCCEeeeecCCCCcccc
Confidence 68899987764 764322 11 11233455788887544 2369999998875 766433221 1
Q ss_pred ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccC--------cCceeEEEECCEEEEEeCcccC
Q 018336 177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQE--------RDECEAVVIGSEFWVVSGYKTE 246 (358)
Q Consensus 177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~--------~~~~~~~~~~~~lyv~gG~~~~ 246 (358)
+...+.+..++.+|+..+ ...+..+|.+++ .|+.-...|.. .....-++.++.+|+.+.
T Consensus 196 ~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~---- 264 (394)
T PRK11138 196 RGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY---- 264 (394)
T ss_pred cCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc----
Confidence 122233445677776532 135888888876 48743211211 011234567899998752
Q ss_pred CCCceeeeeEEEECCCCc--eEE
Q 018336 247 RQGIFDESAESYQLGTGE--WKR 267 (358)
Q Consensus 247 ~~~~~~~~i~~yd~~~~~--W~~ 267 (358)
...+.++|+.+++ |+.
T Consensus 265 -----~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 265 -----NGNLVALDLRSGQIVWKR 282 (394)
T ss_pred -----CCeEEEEECCCCCEEEee
Confidence 2357899998874 875
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.18 E-value=0.011 Score=51.27 Aligned_cols=122 Identities=18% Similarity=0.318 Sum_probs=72.6
Q ss_pred EEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC
Q 018336 141 VVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA 219 (358)
Q Consensus 141 yv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (358)
||-|-+.....-....+..||..+.+|.....--.. .-..+... ++++|+.|-....+.....+-.||..+++|..++
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 455544433211356899999999999987543111 11222223 6788888765544334577999999999999887
Q ss_pred C-C----ccCcCceeEEEECC-EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336 220 R-M----TQERDECEAVVIGS-EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN 270 (358)
Q Consensus 220 ~-~----p~~~~~~~~~~~~~-~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~ 270 (358)
. . |.+.........++ ++++.|.. ... ...+..| +..+|+.+..
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g----~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG----STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEecee-cCC----CceEEEE--cCCceEeccc
Confidence 5 2 33322111112233 46766655 222 3345566 5668999987
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.03 E-value=0.075 Score=45.45 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=100.6
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCC-----
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP----- 174 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~----- 174 (358)
..++.+|+.++.-..+.... + .+++.. ++.+|+... ....++|+.+++++.+...+
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~-~-------~G~~~~~~~g~l~v~~~---------~~~~~~d~~~g~~~~~~~~~~~~~~ 84 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG-P-------NGMAFDRPDGRLYVADS---------GGIAVVDPDTGKVTVLADLPDGGVP 84 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS-E-------EEEEEECTTSEEEEEET---------TCEEEEETTTTEEEEEEEEETTCSC
T ss_pred CEEEEEECCCCeEEEEecCC-C-------ceEEEEccCCEEEEEEc---------CceEEEecCCCcEEEEeeccCCCcc
Confidence 47899999988765432222 1 133333 688888765 24567799999998876542
Q ss_pred CCceeeeeEEECCEEEEEcCcCCCCCCC--CeEEEEECCCCceEecC-CCccCcCceeEE-EECC-EEEEEeCcccCCCC
Q 018336 175 DNRSFFAAGELNGRVIIAGGHDENKTAL--SSAWAYDLIKDEWTELA-RMTQERDECEAV-VIGS-EFWVVSGYKTERQG 249 (358)
Q Consensus 175 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~-~~p~~~~~~~~~-~~~~-~lyv~gG~~~~~~~ 249 (358)
..+.+-.++.-+|.+|+.--........ ..++.+++. ++.+.+. .+.. ..+++ .-++ .||+.--.
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~---pNGi~~s~dg~~lyv~ds~------ 154 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF---PNGIAFSPDGKTLYVADSF------ 154 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS---EEEEEEETTSSEEEEEETT------
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc---ccceEECCcchheeecccc------
Confidence 2233334444578888864322111111 568999998 5555443 2211 12233 3344 47776432
Q ss_pred ceeeeeEEEECCCC--ceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceE
Q 018336 250 IFDESAESYQLGTG--EWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEF 327 (358)
Q Consensus 250 ~~~~~i~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i 327 (358)
...|++||+... ++.......... .... .-...++-.+|+|||..-.. ..|
T Consensus 155 --~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g--------------------~pDG~~vD~~G~l~va~~~~----~~I 207 (246)
T PF08450_consen 155 --NGRIWRFDLDADGGELSNRRVFIDFP-GGPG--------------------YPDGLAVDSDGNLWVADWGG----GRI 207 (246)
T ss_dssp --TTEEEEEEEETTTCCEEEEEEEEE-S-SSSC--------------------EEEEEEEBTTS-EEEEEETT----TEE
T ss_pred --cceeEEEeccccccceeeeeeEEEcC-CCCc--------------------CCCcceEcCCCCEEEEEcCC----CEE
Confidence 346888888643 243222210000 0000 00112344578999973211 589
Q ss_pred EEEECCCCceEeecCC
Q 018336 328 YVVEGRNGKFRKFDVP 343 (358)
Q Consensus 328 ~~yd~~~~~W~~~~~p 343 (358)
++||++...-..+.+|
T Consensus 208 ~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 208 VVFDPDGKLLREIELP 223 (246)
T ss_dssp EEEETTSCEEEEEE-S
T ss_pred EEECCCccEEEEEcCC
Confidence 9999996667777777
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.97 E-value=0.19 Score=42.51 Aligned_cols=182 Identities=19% Similarity=0.225 Sum_probs=103.4
Q ss_pred eEEEEeCCCCC--eeecCCCCCCCCCCCceeE-EEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCc
Q 018336 103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQ-VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNR 177 (358)
Q Consensus 103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~-~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~ 177 (358)
.+.++|+.+++ |+.-. .... ..... .+..++.+|+..+ ...++++|+.+.+ |+.-. +.+.
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~~~---~~~~~~~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~--~~~~ 68 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GPGI---GGPVATAVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDL--PGPI 68 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSC---SSEEETEEEETTEEEEEET--------TSEEEEEETTTSEEEEEEEC--SSCG
T ss_pred EEEEEECCCCCEEEEEEC--CCCC---CCccceEEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeec--cccc
Confidence 57788887775 76522 1111 11111 3447889999854 4589999998875 55433 2222
Q ss_pred eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceE-ecCCCccC--cCceeEEEECCEEEEEeCcccCCCCcee
Q 018336 178 SFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWT-ELARMTQE--RDECEAVVIGSEFWVVSGYKTERQGIFD 252 (358)
Q Consensus 178 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~-~~~~~p~~--~~~~~~~~~~~~lyv~gG~~~~~~~~~~ 252 (358)
... ....++.+|+... ...++.+|..++ .|+ .....+.. .......+.++.+|+... .
T Consensus 69 ~~~-~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 131 (238)
T PF13360_consen 69 SGA-PVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---------S 131 (238)
T ss_dssp GSG-EEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---------C
T ss_pred cce-eeecccccccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec---------c
Confidence 111 4667899988852 137999998766 598 34332222 222334455777777753 2
Q ss_pred eeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEE
Q 018336 253 ESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVV 330 (358)
Q Consensus 253 ~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~y 330 (358)
..+.++|+.+++ |+.-...+... .. .... .......+..++.+|+..+.. .+..+
T Consensus 132 g~l~~~d~~tG~~~w~~~~~~~~~~-~~-~~~~----------------~~~~~~~~~~~~~v~~~~~~g-----~~~~~ 188 (238)
T PF13360_consen 132 GKLVALDPKTGKLLWKYPVGEPRGS-SP-ISSF----------------SDINGSPVISDGRVYVSSGDG-----RVVAV 188 (238)
T ss_dssp SEEEEEETTTTEEEEEEESSTT-SS----EEEE----------------TTEEEEEECCTTEEEEECCTS-----SEEEE
T ss_pred CcEEEEecCCCcEEEEeecCCCCCC-cc-eeee----------------cccccceEEECCEEEEEcCCC-----eEEEE
Confidence 367899999874 77644332110 00 0000 011233445578999988763 36666
Q ss_pred ECCCCc--eEe
Q 018336 331 EGRNGK--FRK 339 (358)
Q Consensus 331 d~~~~~--W~~ 339 (358)
|..+++ |+.
T Consensus 189 d~~tg~~~w~~ 199 (238)
T PF13360_consen 189 DLATGEKLWSK 199 (238)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCCEEEEe
Confidence 999887 844
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00051 Score=58.52 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=38.8
Q ss_pred CCCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhH
Q 018336 25 ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFY 67 (358)
Q Consensus 25 ~~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~ 67 (358)
..|-+||||+++.||+.|+.+.+.++..|||+|+.+..+...+
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 3478999999999999999999999999999999998877653
No 66
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.91 E-value=0.22 Score=42.40 Aligned_cols=127 Identities=20% Similarity=0.293 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCceeEEEEE--CC--EEEEEcCcCC--------CCC----CCcceeEEEECCCCcEE--eCCCCCCCcee
Q 018336 118 GPVPEYPAGLPLFCQVASS--QG--KLVVMGGWDP--------ASY----SPVSHVFVYDFTTRRWT--RGKNMPDNRSF 179 (358)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~--~~--~lyv~Gg~~~--------~~~----~~~~~~~~yd~~t~~W~--~~~~~~~~~~~ 179 (358)
..+|.+ |+.|.+.++ .| -+.+|||..- .+| ++.-.++..|+.-+-.. .+|.+......
T Consensus 82 GdvP~a----RYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF 157 (337)
T PF03089_consen 82 GDVPEA----RYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF 157 (337)
T ss_pred CCCCcc----cccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEE
Confidence 455654 445555444 33 3678888631 111 23346788888877664 37788888999
Q ss_pred eeeEEECCEEEEEcCcCCCCC-CCCeEEEEEC--CC-CceEecCCCccCcCceeEE---EECCEEEEEeCcccCCC
Q 018336 180 FAAGELNGRVIIAGGHDENKT-ALSSAWAYDL--IK-DEWTELARMTQERDECEAV---VIGSEFWVVSGYKTERQ 248 (358)
Q Consensus 180 ~~~~~~~~~iyv~GG~~~~~~-~~~~~~~yd~--~t-~~W~~~~~~p~~~~~~~~~---~~~~~lyv~gG~~~~~~ 248 (358)
|.+..-++.+|++||..-..+ ....++.... -- .-...+.-++......++. .-...+.++||+....+
T Consensus 158 Hvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQ 233 (337)
T PF03089_consen 158 HVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQ 233 (337)
T ss_pred EEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccce
Confidence 999999999999999864322 2333433322 11 1223333344443333332 22356888899876654
No 67
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.81 E-value=0.39 Score=43.93 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=91.6
Q ss_pred eEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCC--C
Q 018336 103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPD--N 176 (358)
Q Consensus 103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~ 176 (358)
.++++|+.+++ |+.-.. .. .....+..++.+|+..+ ...++.+|+.+.+ |+.-...+. .
T Consensus 116 ~l~ald~~tG~~~W~~~~~--~~-----~~~~p~v~~~~v~v~~~--------~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLS--SE-----VLSPPLVANGLVVVRTN--------DGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred EEEEEECCCCcEeeeeccC--ce-----eecCCEEECCEEEEECC--------CCeEEEEEcCCCceeeEEccCCCceee
Confidence 56777776554 643221 10 11122334666666433 2368899987664 765322211 1
Q ss_pred ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccCc--------CceeEEEECCEEEEEeCcccC
Q 018336 177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQER--------DECEAVVIGSEFWVVSGYKTE 246 (358)
Q Consensus 177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~--------~~~~~~~~~~~lyv~gG~~~~ 246 (358)
+.....+..++.+|+. .. ...+..+|++++ .|+.-...+... .....+..++.+|+...
T Consensus 181 ~~~~sp~~~~~~v~~~-~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~---- 249 (377)
T TIGR03300 181 RGSASPVIADGGVLVG-FA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY---- 249 (377)
T ss_pred cCCCCCEEECCEEEEE-CC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----
Confidence 1122334456665543 21 136889998776 486432222110 11233456888888652
Q ss_pred CCCceeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCC
Q 018336 247 RQGIFDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGP 324 (358)
Q Consensus 247 ~~~~~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~ 324 (358)
...+++||+++++ |..-... ....+..+++||+....
T Consensus 250 -----~g~l~a~d~~tG~~~W~~~~~~-------------------------------~~~p~~~~~~vyv~~~~----- 288 (377)
T TIGR03300 250 -----QGRVAALDLRSGRVLWKRDASS-------------------------------YQGPAVDDNRLYVTDAD----- 288 (377)
T ss_pred -----CCEEEEEECCCCcEEEeeccCC-------------------------------ccCceEeCCEEEEECCC-----
Confidence 2357889998764 7543110 00124568899887643
Q ss_pred ceEEEEECCCCc--eEe
Q 018336 325 QEFYVVEGRNGK--FRK 339 (358)
Q Consensus 325 ~~i~~yd~~~~~--W~~ 339 (358)
..++.+|..+++ |+.
T Consensus 289 G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 289 GVVVALDRRSGSELWKN 305 (377)
T ss_pred CeEEEEECCCCcEEEcc
Confidence 478899987664 865
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.48 E-value=0.11 Score=45.20 Aligned_cols=78 Identities=9% Similarity=0.213 Sum_probs=50.3
Q ss_pred EEEcCcCCCCC-CCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeEEEECCCCceEE
Q 018336 190 IIAGGHDENKT-ALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKR 267 (358)
Q Consensus 190 yv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~ 267 (358)
||-|-.+..+. .-..+..||+.+.+|..+..--.. .-..+... +++||+.|-+.... .....+..||.++.+|+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~--~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNG--TNSSNLATYDFKNQTWSS 78 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECC--CCceeEEEEecCCCeeee
Confidence 44444444332 346799999999999987643111 11223333 77788888665332 125578899999999998
Q ss_pred cCC
Q 018336 268 AEN 270 (358)
Q Consensus 268 ~~~ 270 (358)
+..
T Consensus 79 ~~~ 81 (281)
T PF12768_consen 79 LGG 81 (281)
T ss_pred cCC
Confidence 876
No 69
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.47 E-value=0.0025 Score=54.61 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHhccCC-----cchhhhHHhhcHhHHHhhcChhhHHHHH
Q 018336 27 VPGLPEEISLECLTRLH-----YSTHRVATRVSRRWRQLIQSRDFYYQRK 71 (358)
Q Consensus 27 ~~~Lp~d~~~~il~rlp-----~~~~~~~~~v~k~w~~l~~s~~f~~~~~ 71 (358)
|+-||+|++++||.++- ..++.++.+|||.|.-....|+++....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 45799999999999864 4889999999999999999999987643
No 70
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.38 E-value=0.49 Score=40.39 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=74.6
Q ss_pred EEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEEC
Q 018336 132 QVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDL 210 (358)
Q Consensus 132 ~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 210 (358)
++.. .++.+|.--|..+ .+.+..||+.|++-....++|..-..=+.+.++++||.+= -......+||.
T Consensus 49 GL~~~~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd~ 117 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT------WKEGTGFVYDP 117 (264)
T ss_dssp EEEEEETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE------SSSSEEEEEET
T ss_pred cEEecCCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE------ecCCeEEEEcc
Confidence 4444 5788888877543 4589999999998776667777667777888999999982 12467899999
Q ss_pred CCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 211 IKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 211 ~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
.+ .+.+..++.+..+-+++.-+..|++.-|. +.++..||++-
T Consensus 118 ~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS---------~~L~~~dP~~f 159 (264)
T PF05096_consen 118 NT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGS---------SRLYFLDPETF 159 (264)
T ss_dssp TT--TEEEEEEE-SSS--EEEECSSCEEEE-SS---------SEEEEE-TTT-
T ss_pred cc--ceEEEEEecCCcceEEEcCCCEEEEECCc---------cceEEECCccc
Confidence 76 56666666655666777767778888773 46778888754
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.26 E-value=0.91 Score=41.53 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=97.0
Q ss_pred eEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCce
Q 018336 103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNRS 178 (358)
Q Consensus 103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~ 178 (358)
.+.+||+.+++ |+.-..-.. ..+.+..++.+|+.+. ...++.+|..+.+ |+.-.. .. .
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~~~-------~~~p~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~--~~-~ 137 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDERL-------SGGVGADGGLVFVGTE--------KGEVIALDAEDGKELWRAKLS--SE-V 137 (377)
T ss_pred eEEEEEccCCcEeeeecCCCCc-------ccceEEcCCEEEEEcC--------CCEEEEEECCCCcEeeeeccC--ce-e
Confidence 68999988775 764322211 1134455777886543 2379999987764 765321 11 1
Q ss_pred eeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCcc--CcCceeEEEECCEEEEEeCcccCCCCceeee
Q 018336 179 FFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQ--ERDECEAVVIGSEFWVVSGYKTERQGIFDES 254 (358)
Q Consensus 179 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~--~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~ 254 (358)
....+..++.+|+..+ ...++++|++++ .|+.-...+. .+.....++.++.+|+ +.. ...
T Consensus 138 ~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~--------~g~ 201 (377)
T TIGR03300 138 LSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA--------GGK 201 (377)
T ss_pred ecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC--------CCE
Confidence 2223445777777532 245899999876 4875332221 1122334566776554 321 235
Q ss_pred eEEEECCCC--ceEEcCCccccCC-CCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEE
Q 018336 255 AESYQLGTG--EWKRAENAWKLSQ-CPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVE 331 (358)
Q Consensus 255 i~~yd~~~~--~W~~~~~~p~~~~-~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd 331 (358)
+..+|+.++ .|+.-...+.... ..+. .....+....++.||+.... ..++.||
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~-------------------~~~~~~p~~~~~~vy~~~~~-----g~l~a~d 257 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERL-------------------VDVDGDPVVDGGQVYAVSYQ-----GRVAALD 257 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhh-------------------hccCCccEEECCEEEEEEcC-----CEEEEEE
Confidence 788999876 4764322111000 0000 00111234567888886543 4789999
Q ss_pred CCCCc--eEee
Q 018336 332 GRNGK--FRKF 340 (358)
Q Consensus 332 ~~~~~--W~~~ 340 (358)
+++++ |+.-
T Consensus 258 ~~tG~~~W~~~ 268 (377)
T TIGR03300 258 LRSGRVLWKRD 268 (377)
T ss_pred CCCCcEEEeec
Confidence 88765 7653
No 72
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=96.14 E-value=0.073 Score=40.49 Aligned_cols=89 Identities=10% Similarity=0.173 Sum_probs=60.0
Q ss_pred EEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeC
Q 018336 231 VVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELG 310 (358)
Q Consensus 231 ~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~ 310 (358)
+.+||.+|..+..... ....|.+||..+++|+.+..+.... .. .....++.++
T Consensus 2 icinGvly~~a~~~~~----~~~~IvsFDv~~E~f~~i~~P~~~~-~~----------------------~~~~~L~~~~ 54 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDS----DNNVIVSFDVRSEKFRFIKLPEDPY-SS----------------------DCSSTLIEYK 54 (129)
T ss_pred EEECcEEEeEEEECCC----CCcEEEEEEcCCceEEEEEeeeeec-cc----------------------cCccEEEEeC
Confidence 5689999988866211 2568999999999998777530000 11 1234568899
Q ss_pred CeEEEECCCCCCC--CceEEEE-ECCCCceEee--cCCCCc
Q 018336 311 GCTLVTGSGYQGG--PQEFYVV-EGRNGKFRKF--DVPAEY 346 (358)
Q Consensus 311 ~~i~v~gG~~~~~--~~~i~~y-d~~~~~W~~~--~~p~~~ 346 (358)
|+|.++.-..... .-++|++ |.++++|.+. .+|...
T Consensus 55 G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~~~ 95 (129)
T PF08268_consen 55 GKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLPPSW 95 (129)
T ss_pred CeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECChHH
Confidence 9999986654332 2688888 5667889887 466543
No 73
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.60 E-value=2.1 Score=40.31 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=59.5
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
..+|++|..+++-+.+...+..........-+..|++....+. ...++.+|..++..+.+...... .......-+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~wSpD 316 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAI-DTEPSWHPD 316 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCC-ccceEECCC
Confidence 4799999998887776654432222222122445665532221 25799999999988877643211 111122335
Q ss_pred CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336 235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE 269 (358)
Q Consensus 235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~ 269 (358)
|+ |++..... + ...++.+|..+++++.+.
T Consensus 317 G~~I~f~s~~~----g--~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 317 GKSLIFTSERG----G--KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CCEEEEEECCC----C--CceEEEEECCCCCEEEEe
Confidence 55 44443221 1 246888999998888764
No 74
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.36 E-value=2.8 Score=40.31 Aligned_cols=119 Identities=17% Similarity=0.223 Sum_probs=69.1
Q ss_pred EEEECCEEEEEcCcCCCCCCCcceeEEEECCCC--cEEeCCCCCCC--------ceeeeeEEECCEEEEEcCcCCCCCCC
Q 018336 133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR--RWTRGKNMPDN--------RSFFAAGELNGRVIIAGGHDENKTAL 202 (358)
Q Consensus 133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~ 202 (358)
-+..++.||+... ...++.+|..|. .|+.-...+.. ....+.++.++++|+... -
T Consensus 65 Pvv~~g~vyv~s~--------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------d 129 (527)
T TIGR03075 65 PLVVDGVMYVTTS--------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------D 129 (527)
T ss_pred CEEECCEEEEECC--------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------C
Confidence 4456899998654 236888888875 47754332211 112234566788887521 2
Q ss_pred CeEEEEECCCCc--eEecC-CCccC-cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEcC
Q 018336 203 SSAWAYDLIKDE--WTELA-RMTQE-RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRAE 269 (358)
Q Consensus 203 ~~~~~yd~~t~~--W~~~~-~~p~~-~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~~ 269 (358)
..+.++|.+|++ |+.-. ..... ....+-++.+++||+-...... .....+.+||.++++ |+.-.
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~---~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF---GVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeeccccc---CCCcEEEEEECCCCceeEeccC
Confidence 469999998774 87532 22211 1122345778888775422111 124578999999875 77544
No 75
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.28 E-value=1.4 Score=36.21 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=80.0
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcE--EeC----CCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCe
Q 018336 132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW--TRG----KNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSS 204 (358)
Q Consensus 132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W--~~~----~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 204 (358)
++....+.+|++-| +.+|+++...... +.+ +.+|.+ ...+.... ++++|++-| +.
T Consensus 11 A~~~~~g~~y~FkG---------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-IDAa~~~~~~~~~yfFkg--------~~ 72 (194)
T cd00094 11 AVTTLRGELYFFKG---------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VDAAFERPDTGKIYFFKG--------DK 72 (194)
T ss_pred eEEEeCCEEEEEeC---------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-ccEEEEECCCCEEEEECC--------CE
Confidence 55566799999976 2688888652111 112 112221 11122222 378999855 35
Q ss_pred EEEEECCCCceE---ecC--CCccCcCce-eEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCC
Q 018336 205 AWAYDLIKDEWT---ELA--RMTQERDEC-EAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQ 276 (358)
Q Consensus 205 ~~~yd~~t~~W~---~~~--~~p~~~~~~-~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~ 276 (358)
.+.|+..+..+. .+. ..|...... ++... ++++|++.|. ..+.||..+++... ..|
T Consensus 73 yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~----------~y~ry~~~~~~v~~--~yP---- 136 (194)
T cd00094 73 YWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD----------KYWRYDEKTQKMDP--GYP---- 136 (194)
T ss_pred EEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC----------EEEEEeCCCccccC--CCC----
Confidence 777776542221 111 111100111 22233 6889999864 34678876554321 111
Q ss_pred CCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336 277 CPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK 336 (358)
Q Consensus 277 ~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~ 336 (358)
+. -.+.|..+|.. ..++....++++|++-| +..|+||..+++
T Consensus 137 --~~--------i~~~w~g~p~~--idaa~~~~~~~~yfF~g------~~y~~~d~~~~~ 178 (194)
T cd00094 137 --KL--------IETDFPGVPDK--VDAAFRWLDGYYYFFKG------DQYWRFDPRSKE 178 (194)
T ss_pred --cc--------hhhcCCCcCCC--cceeEEeCCCcEEEEEC------CEEEEEeCccce
Confidence 10 11245445432 22333444589999998 589999998876
No 76
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.24 E-value=0.65 Score=39.68 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=73.0
Q ss_pred eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEE
Q 018336 181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ 259 (358)
Q Consensus 181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd 259 (358)
+... .++.+|.--|..+ .+.+..||+++++-....++|...++-+++.++++||.+-=. .....+||
T Consensus 49 GL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk--------~~~~f~yd 116 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK--------EGTGFVYD 116 (264)
T ss_dssp EEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS--------SSEEEEEE
T ss_pred cEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec--------CCeEEEEc
Confidence 3444 4788888766543 368999999999887777888888888899999999999632 23567899
Q ss_pred CCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCC
Q 018336 260 LGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNG 335 (358)
Q Consensus 260 ~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~ 335 (358)
.++ .+.+...+... .+=+++..+..|++--|. +.++.+||++-
T Consensus 117 ~~t--l~~~~~~~y~~--------------------------EGWGLt~dg~~Li~SDGS-----~~L~~~dP~~f 159 (264)
T PF05096_consen 117 PNT--LKKIGTFPYPG--------------------------EGWGLTSDGKRLIMSDGS-----SRLYFLDPETF 159 (264)
T ss_dssp TTT--TEEEEEEE-SS--------------------------S--EEEECSSCEEEE-SS-----SEEEEE-TTT-
T ss_pred ccc--ceEEEEEecCC--------------------------cceEEEcCCCEEEEECCc-----cceEEECCccc
Confidence 875 56666554321 122346677788888776 58888888753
No 77
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.16 E-value=1.1 Score=40.79 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=75.3
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCE-EEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC----
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGK-LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN---- 176 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~---- 176 (358)
..++..|-..+. .+..+..... +...+...-+|. ..+.+|. ..-++.||..+.+-.++.++-..
T Consensus 237 lrifqvDGk~N~--~lqS~~l~~f--Pi~~a~f~p~G~~~i~~s~r-------rky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 237 LRIFQVDGKVNP--KLQSIHLEKF--PIQKAEFAPNGHSVIFTSGR-------RKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred EEEEEecCccCh--hheeeeeccC--ccceeeecCCCceEEEeccc-------ceEEEEeeccccccccccCCCCcccch
Confidence 456667777665 3333222111 122233333444 6666653 34689999999998887654321
Q ss_pred ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeE
Q 018336 177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAE 256 (358)
Q Consensus 177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~ 256 (358)
...|.....+. +.++-|.. ..+......|+.|..--.++..........-...||+.||. ..|+
T Consensus 306 ~e~FeVShd~~-fia~~G~~------G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~---------GeV~ 369 (514)
T KOG2055|consen 306 MERFEVSHDSN-FIAIAGNN------GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT---------GEVY 369 (514)
T ss_pred hheeEecCCCC-eEEEcccC------ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---------ceEE
Confidence 23344444445 44444443 34888888888887544444433333333333447777764 3678
Q ss_pred EEECCCC
Q 018336 257 SYQLGTG 263 (358)
Q Consensus 257 ~yd~~~~ 263 (358)
+||+..+
T Consensus 370 v~nl~~~ 376 (514)
T KOG2055|consen 370 VWNLRQN 376 (514)
T ss_pred EEecCCc
Confidence 9999887
No 78
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.10 E-value=2.8 Score=38.84 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=77.7
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
..++++|..+++-..+...+..........-+..|++....+. ...++.+|..++..+.+......... ....-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTE-PSWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCC-EEECCC
Confidence 5799999998877666544332222221112345665533221 25799999998887776543321111 112235
Q ss_pred CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeE
Q 018336 235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCT 313 (358)
Q Consensus 235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i 313 (358)
|+ |++.....+ ...++.+|..++.++.+..... . ... .....+++.
T Consensus 289 g~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~~~~~---~---~~~---------------------~~~spdg~~ 335 (417)
T TIGR02800 289 GKSIAFTSDRGG------SPQIYMMDADGGEVRRLTFRGG---Y---NAS---------------------PSWSPDGDL 335 (417)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCEEEeecCCC---C---ccC---------------------eEECCCCCE
Confidence 55 444432211 2368889998888776643210 0 000 112334555
Q ss_pred EEECCCCCCCCceEEEEECCCCceEee
Q 018336 314 LVTGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 314 ~v~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
+++..... ....++++|+.++.++.+
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERVL 361 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEEc
Confidence 55544322 225788999888766665
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.05 E-value=0.44 Score=43.24 Aligned_cols=147 Identities=18% Similarity=0.118 Sum_probs=84.4
Q ss_pred CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee---eeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336 138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF---FAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE 214 (358)
Q Consensus 138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (358)
--+.+.+|.++. -.++-.|-.+|. .+.++-..++- ...+..+....+++|.. .-++.||.++.+
T Consensus 225 ~plllvaG~d~~-----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr------ky~ysyDle~ak 291 (514)
T KOG2055|consen 225 APLLLVAGLDGT-----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR------KYLYSYDLETAK 291 (514)
T ss_pred CceEEEecCCCc-----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc------eEEEEeeccccc
Confidence 457788887642 255666666665 44443332222 22222334366666644 349999999999
Q ss_pred eEecCCCcc---CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccC
Q 018336 215 WTELARMTQ---ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLF 291 (358)
Q Consensus 215 W~~~~~~p~---~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~ 291 (358)
-.++.++.. .-...-.+..++.+.++.|.. .-|......+++|-.--.++ + +.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~--------G~I~lLhakT~eli~s~Kie--G---~v----------- 347 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN--------GHIHLLHAKTKELITSFKIE--G---VV----------- 347 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccC--------ceEEeehhhhhhhhheeeec--c---EE-----------
Confidence 888875432 112222456677777777764 34566777777774322221 1 00
Q ss_pred ceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336 292 CWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK 336 (358)
Q Consensus 292 ~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~ 336 (358)
........+-.|+++||. ..||++|..++.
T Consensus 348 ----------~~~~fsSdsk~l~~~~~~-----GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 348 ----------SDFTFSSDSKELLASGGT-----GEVYVWNLRQNS 377 (514)
T ss_pred ----------eeEEEecCCcEEEEEcCC-----ceEEEEecCCcc
Confidence 111223345567788887 489999999885
No 80
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.91 E-value=1.6 Score=37.26 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=89.2
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCC-----CcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTT-----RRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLI 211 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t-----~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 211 (358)
.+++|++.+..+ +.+..|.... ++....-.+|.+..+.+.++++|.+|.--. ....+..||+.
T Consensus 30 ~~~iy~~~~~~~------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~ 97 (250)
T PF02191_consen 30 SEKIYVTSGFSG------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLT 97 (250)
T ss_pred CCCEEEECccCC------CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec------CCceEEEEECc
Confidence 456888877543 2556654332 223333346666677778889999998632 35789999999
Q ss_pred CCceE---ecCCC------ccCcCce---eEEEECCEEEEEeCcccCCCCceeeeeEEEECCC----CceEEcCCccccC
Q 018336 212 KDEWT---ELARM------TQERDEC---EAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT----GEWKRAENAWKLS 275 (358)
Q Consensus 212 t~~W~---~~~~~------p~~~~~~---~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~----~~W~~~~~~p~~~ 275 (358)
+++-. .++.. |....++ ..++-++-|+|+=....... .-.+-..|+.+ .+|..--..
T Consensus 98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g---~ivvskld~~tL~v~~tw~T~~~k---- 170 (250)
T PF02191_consen 98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG---NIVVSKLDPETLSVEQTWNTSYPK---- 170 (250)
T ss_pred CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC---cEEEEeeCcccCceEEEEEeccCc----
Confidence 87644 45422 1111111 12333344666643322211 12344455554 346532111
Q ss_pred CCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336 276 QCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 276 ~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
+....++.+=|.||++.........-.+.||..+++=+.+
T Consensus 171 -------------------------~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 171 -------------------------RSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV 210 (250)
T ss_pred -------------------------hhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceece
Confidence 1122345555899999877654445668899998876666
No 81
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.91 E-value=2.1 Score=36.57 Aligned_cols=209 Identities=11% Similarity=0.078 Sum_probs=107.5
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCc--ee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR--SF 179 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--~~ 179 (358)
.+-..||.+++=...+.-.... -|.+++ -++..++.-+ ...+-++|+.+..-++.+ +|..+ .+
T Consensus 84 aiGhLdP~tGev~~ypLg~Ga~-----Phgiv~gpdg~~Witd~--------~~aI~R~dpkt~evt~f~-lp~~~a~~n 149 (353)
T COG4257 84 AIGHLDPATGEVETYPLGSGAS-----PHGIVVGPDGSAWITDT--------GLAIGRLDPKTLEVTRFP-LPLEHADAN 149 (353)
T ss_pred cceecCCCCCceEEEecCCCCC-----CceEEECCCCCeeEecC--------cceeEEecCcccceEEee-cccccCCCc
Confidence 3445777777765554322211 122222 2455555533 236888888877665543 23333 23
Q ss_pred eeeEEEC--CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeE
Q 018336 180 FAAGELN--GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAE 256 (358)
Q Consensus 180 ~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~ 256 (358)
.-.++++ +.+++.|-....+ .+|+.++.-+..+ .|+......+| .-||.+|+..=. -+.|.
T Consensus 150 let~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfp-aPqG~gpyGi~atpdGsvwyasla--------gnaia 213 (353)
T COG4257 150 LETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFP-APQGGGPYGICATPDGSVWYASLA--------GNAIA 213 (353)
T ss_pred ccceeeCCCccEEEeeccccce-------ecCcccCceeeec-cCCCCCCcceEECCCCcEEEEecc--------ccceE
Confidence 3334453 6777776432221 4566666555444 33433334444 567888877321 12234
Q ss_pred EEECCCCceEEcCCccc-c--------CCCCCc-------eeeeeecCccCceec--cccc-eeeceEEEEeCCeEEEEC
Q 018336 257 SYQLGTGEWKRAENAWK-L--------SQCPRS-------NVGVGREGKLFCWAE--TEAA-VQFGTCRVELGGCTLVTG 317 (358)
Q Consensus 257 ~yd~~~~~W~~~~~~p~-~--------~~~~~~-------~~~~~~d~~~~~W~~--lp~~-~r~~~~~~~~~~~i~v~g 317 (358)
..|+.+..=+++...-. . .+..|. .....||+...+|.+ ||.. .|-+..-+---+++++--
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~se 293 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSE 293 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeec
Confidence 45555443333322110 0 001111 111279999999955 4444 344444444556676632
Q ss_pred CCCCCCCceEEEEECCCCceEeecCCCC
Q 018336 318 SGYQGGPQEFYVVEGRNGKFRKFDVPAE 345 (358)
Q Consensus 318 G~~~~~~~~i~~yd~~~~~W~~~~~p~~ 345 (358)
-.. +.|.+||+++.+.+++++|.+
T Consensus 294 a~a----gai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 294 ADA----GAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred ccc----CceeecCcccceEEEecCCCC
Confidence 211 689999999999999866644
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.81 E-value=3.4 Score=39.65 Aligned_cols=43 Identities=26% Similarity=0.502 Sum_probs=38.5
Q ss_pred CCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHH
Q 018336 26 LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYY 68 (358)
Q Consensus 26 ~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~ 68 (358)
.++.||.++...||..|+.+++..++.||+.|+.++.+-....
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 4678999999999999999999999999999999987776554
No 83
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.75 E-value=3.7 Score=38.60 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=79.3
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF 180 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 180 (358)
..++.+|..+++-..+...+... ......- +..|++....++ ..+++++|..+++.+.+..-.......
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~-----~~~~wSPDG~~La~~~~~~g-----~~~Iy~~dl~tg~~~~lt~~~~~~~~p 311 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGIN-----GAPRFSPDGKKLALVLSKDG-----QPEIYVVDIATKALTRITRHRAIDTEP 311 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCc-----CCeeECCCCCEEEEEEeCCC-----CeEEEEEECCCCCeEECccCCCCccce
Confidence 35778888877766665544311 1112222 345655433221 347999999999888775432211111
Q ss_pred eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336 181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
....-+..|++...... ...++.+|..++.++.+..-. .........-+|+.+++.+.... ...++.+|+
T Consensus 312 ~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g-----~~~I~~~dl 381 (448)
T PRK04792 312 SWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNG-----KFNIARQDL 381 (448)
T ss_pred EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCC-----ceEEEEEEC
Confidence 11112344555532221 257999999999888775211 11111223335554333332211 236888999
Q ss_pred CCCceEEcCC
Q 018336 261 GTGEWKRAEN 270 (358)
Q Consensus 261 ~~~~W~~~~~ 270 (358)
.+++.+.+..
T Consensus 382 ~~g~~~~lt~ 391 (448)
T PRK04792 382 ETGAMQVLTS 391 (448)
T ss_pred CCCCeEEccC
Confidence 9988777653
No 84
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.50 E-value=2.2 Score=36.36 Aligned_cols=113 Identities=17% Similarity=0.040 Sum_probs=66.9
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDE 214 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (358)
++.||+..-. ...++.+|+.+.+-..+.... ..+++.. ++.+|+... .....+|+.+++
T Consensus 11 ~g~l~~~D~~-------~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIP-------GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEETT-------TTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTE
T ss_pred CCEEEEEEcC-------CCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCc
Confidence 5778887532 358999999998765532222 3334443 688888853 235667999999
Q ss_pred eEecCCCcc-----CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336 215 WTELARMTQ-----ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE 269 (358)
Q Consensus 215 W~~~~~~p~-----~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~ 269 (358)
++.+...+. .+..-.++--+|+||+..-............++++++. ++...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 998775532 22222233447888887532221111111678999999 6655544
No 85
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.93 E-value=0.88 Score=34.49 Aligned_cols=84 Identities=8% Similarity=0.023 Sum_probs=56.2
Q ss_pred EEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC---ccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEE-
Q 018336 183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM---TQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESY- 258 (358)
Q Consensus 183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~y- 258 (358)
+.++|.+|...-.. ......+.+||..+++|+.+..+ ........++.++|+|-++.-..... ...-.+++.
T Consensus 2 icinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLe 77 (129)
T PF08268_consen 2 ICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLE 77 (129)
T ss_pred EEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEee
Confidence 45788899887651 22357899999999999987642 33445567789999998876443221 113456666
Q ss_pred ECCCCceEEcCC
Q 018336 259 QLGTGEWKRAEN 270 (358)
Q Consensus 259 d~~~~~W~~~~~ 270 (358)
|.++.+|++...
T Consensus 78 D~~k~~Wsk~~~ 89 (129)
T PF08268_consen 78 DYEKQEWSKKHI 89 (129)
T ss_pred ccccceEEEEEE
Confidence 455678987654
No 86
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.85 E-value=5.6 Score=37.08 Aligned_cols=147 Identities=11% Similarity=0.085 Sum_probs=77.7
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA 181 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 181 (358)
.++.+|..+++-..+...+... ......-+ ..|++....++ ..+++++|..++..+.+..-+..-....
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g~~-----~~~~~SpDG~~la~~~~~~g-----~~~Iy~~d~~~~~~~~lt~~~~~~~~~~ 293 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEGLN-----GAPAWSPDGSKLAFVLSKDG-----NPEIYVMDLASRQLSRVTNHPAIDTEPF 293 (430)
T ss_pred EEEEEECCCCCEEEccCCCCCc-----CCeEECCCCCEEEEEEccCC-----CceEEEEECCCCCeEEcccCCCCcCCeE
Confidence 5777788777766665443211 11112223 44544332211 2479999999998887754322111111
Q ss_pred eEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeeeeEEEEC
Q 018336 182 AGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 182 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
...-+..|++...... ...++.+|..++.++.+.... .........-+|+ |++..... + ...++.+|+
T Consensus 294 ~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~----~--~~~l~~~dl 362 (430)
T PRK00178 294 WGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQD----G--NFHVAAQDL 362 (430)
T ss_pred ECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccC----C--ceEEEEEEC
Confidence 1112345665532211 247899999988887765221 1111112233444 54443221 1 235889999
Q ss_pred CCCceEEcCC
Q 018336 261 GTGEWKRAEN 270 (358)
Q Consensus 261 ~~~~W~~~~~ 270 (358)
.++..+.+..
T Consensus 363 ~tg~~~~lt~ 372 (430)
T PRK00178 363 QRGSVRILTD 372 (430)
T ss_pred CCCCEEEccC
Confidence 9988877754
No 87
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.54 E-value=4.6 Score=35.02 Aligned_cols=181 Identities=14% Similarity=0.105 Sum_probs=98.0
Q ss_pred ecCCCCCCCCCCCceeEEEEECCEEEEEcCcC-------CC-C-------CCCcceeEEEECCCCcEEeC--CCCCCCce
Q 018336 116 RLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD-------PA-S-------YSPVSHVFVYDFTTRRWTRG--KNMPDNRS 178 (358)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~-------~~-~-------~~~~~~~~~yd~~t~~W~~~--~~~~~~~~ 178 (358)
.+.+.|.. +--.+.++..+++.||. ||+- +. . .+..+.+..||..+++-+.+ ..+-.+..
T Consensus 27 lvG~~P~S--GGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~ 103 (339)
T PF09910_consen 27 LVGPPPTS--GGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTK 103 (339)
T ss_pred eccCCCCC--CCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccc
Confidence 44444433 22346677777888875 5541 10 0 02356789999998874432 12222222
Q ss_pred eeeeE---E---ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCcee
Q 018336 179 FFAAG---E---LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFD 252 (358)
Q Consensus 179 ~~~~~---~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~ 252 (358)
..+-+ . +++.+++.=+-. ...--++..|..++.=+.+..-|... ...+.|-.+|-+ ..... -.
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~---g~ 172 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHK---GV 172 (339)
T ss_pred cccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--ccccc---CC
Confidence 22211 1 367888874322 22345788888888888877665542 244445445533 11111 16
Q ss_pred eeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEEC
Q 018336 253 ESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEG 332 (358)
Q Consensus 253 ~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~ 332 (358)
..+++||+.+++|.. ...+.....-. -+...+...+++...|++|.+-+ ..+.+.||
T Consensus 173 ~~i~~~Dli~~~~~~-e~f~~~~s~Dg----------------~~~~~~~~G~~~s~ynR~faF~r------GGi~vgnP 229 (339)
T PF09910_consen 173 SGIHCLDLISGKWVI-ESFDVSLSVDG----------------GPVIRPELGAMASAYNRLFAFVR------GGIFVGNP 229 (339)
T ss_pred ceEEEEEccCCeEEE-EecccccCCCC----------------CceEeeccccEEEEeeeEEEEEe------ccEEEeCC
Confidence 689999999999933 32221110000 11112455667888888888743 25677777
Q ss_pred C
Q 018336 333 R 333 (358)
Q Consensus 333 ~ 333 (358)
.
T Consensus 230 ~ 230 (339)
T PF09910_consen 230 Y 230 (339)
T ss_pred C
Confidence 6
No 88
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.44 E-value=4.8 Score=36.36 Aligned_cols=192 Identities=17% Similarity=0.121 Sum_probs=95.3
Q ss_pred cceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECC--CCcEEeCCCCCCCce
Q 018336 101 SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT--TRRWTRGKNMPDNRS 178 (358)
Q Consensus 101 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~ 178 (358)
....+.||..++++..+........ +.+.+...-++.||+...... ....+..|... +.+.+.+...+..-.
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~~~--Ps~l~~~~~~~~LY~~~e~~~----~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEGEN--PSWLAVSPDGRRLYVVNEGSG----DSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSS--ECCEEE-TTSSEEEEEETTSS----TTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeeecCCCC--CceEEEEeCCCEEEEEEcccc----CCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 4567778889999987654322111 223233335678999876420 12355555544 457777655442222
Q ss_pred eeeeEEE---CCEEEEEcCcCCCCCCCCeEEEEECCCC-ceEecC---------CCc--cC-cCceeEEEE-CCE-EEEE
Q 018336 179 FFAAGEL---NGRVIIAGGHDENKTALSSAWAYDLIKD-EWTELA---------RMT--QE-RDECEAVVI-GSE-FWVV 240 (358)
Q Consensus 179 ~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~---------~~p--~~-~~~~~~~~~-~~~-lyv~ 240 (358)
..+...+ +..+|+.- +. ...+.+|++..+ +-.... +-+ +. ...|.+..- +++ +|+.
T Consensus 88 ~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp CEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred CcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 2233333 45566652 11 246888888763 322221 111 11 112334333 444 6665
Q ss_pred eCcccCCCCceeeeeEEEECCCCc--eEEcCCc--cccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEE
Q 018336 241 SGYKTERQGIFDESAESYQLGTGE--WKRAENA--WKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVT 316 (358)
Q Consensus 241 gG~~~~~~~~~~~~i~~yd~~~~~--W~~~~~~--p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~ 316 (358)
. .. .+.|.+|+..... ....... |. +..||.. ....-+..+||+
T Consensus 162 d-lG-------~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPRh~-----------------------~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 162 D-LG-------ADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPRHL-----------------------AFSPDGKYAYVV 209 (345)
T ss_dssp E-TT-------TTEEEEEEE-TTS-TEEEEEEEECST-TSSEEEE-----------------------EE-TTSSEEEEE
T ss_pred e-cC-------CCEEEEEEEeCCCceEEEeecccccc-CCCCcEE-----------------------EEcCCcCEEEEe
Confidence 3 11 4567778777654 6553322 11 1122211 112234578888
Q ss_pred CCCCCCCCceEEEEECC--CCceEee
Q 018336 317 GSGYQGGPQEFYVVEGR--NGKFRKF 340 (358)
Q Consensus 317 gG~~~~~~~~i~~yd~~--~~~W~~~ 340 (358)
.... +.|.+|+.. +.+++.+
T Consensus 210 ~e~s----~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 210 NELS----NTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp ETTT----TEEEEEEEETTTTEEEEE
T ss_pred cCCC----CcEEEEeecccCCceeEE
Confidence 7665 566666555 7777776
No 89
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.36 E-value=7 Score=36.60 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=58.3
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
..++++|..+++.+.+...+..........-+..|++....+. ...++.+|..++.-+.+...+.... .....-+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPD 300 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCccC-ceeEcCC
Confidence 5899999999988877655433222222222345555432221 3579999999888777764332111 1222335
Q ss_pred CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336 235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE 269 (358)
Q Consensus 235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~ 269 (358)
|+ |++..... + ...++.+|..+++.+.+.
T Consensus 301 G~~i~f~s~~~----g--~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 301 GSQIVFESDRS----G--SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCEEEEEECCC----C--CCeEEEEECCCCCeEEee
Confidence 55 44332111 1 236788898877766654
No 90
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.29 E-value=4.4 Score=36.15 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=64.8
Q ss_pred ceeEEEECCCC-----cEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc-eEecCCCccCcCce
Q 018336 155 SHVFVYDFTTR-----RWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE-WTELARMTQERDEC 228 (358)
Q Consensus 155 ~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~~~~~ 228 (358)
..+.+|+.... +.+.+.....+-.-.+.+.+++++.+..| ..+.+|+..... +.....+..+....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence 67999999885 55555443333334566667888766654 468899998777 88877666655666
Q ss_pred eEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336 229 EAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN 270 (358)
Q Consensus 229 ~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~ 270 (358)
.+.++++.|++-.-.. .-.+..|+....+-..++.
T Consensus 134 sl~~~~~~I~vgD~~~-------sv~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 134 SLSVFKNYILVGDAMK-------SVSLLRYDEENNKLILVAR 168 (321)
T ss_dssp EEEEETTEEEEEESSS-------SEEEEEEETTTE-EEEEEE
T ss_pred EEeccccEEEEEEccc-------CEEEEEEEccCCEEEEEEe
Confidence 6778888766554332 1234567776666666664
No 91
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.22 E-value=7.3 Score=36.44 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=57.2
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
..++++|..+++-+.+...+..........-+..|++....+. ...++++|+.++.-+.+........ .....-+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~spD 302 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAPD 302 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCCcc-ceEECCC
Confidence 4799999998888777655432211111112345655432221 2579999999887776653322111 1122335
Q ss_pred CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336 235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE 269 (358)
Q Consensus 235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~ 269 (358)
|+ |++.....+ ...++.+|..+++.+.+.
T Consensus 303 G~~l~f~sd~~g------~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 303 GKSIYFTSDRGG------RPQIYRVAASGGSAERLT 332 (433)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCeEEee
Confidence 55 444432211 236788898888877664
No 92
>smart00284 OLF Olfactomedin-like domains.
Probab=92.88 E-value=5.5 Score=34.05 Aligned_cols=144 Identities=9% Similarity=-0.050 Sum_probs=82.3
Q ss_pred CCEEEEEcCcCCCCCCCCeEEEEEC----CCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECC
Q 018336 186 NGRVIIAGGHDENKTALSSAWAYDL----IKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLG 261 (358)
Q Consensus 186 ~~~iyv~GG~~~~~~~~~~~~~yd~----~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~ 261 (358)
++++|++.+.... ...+..|.. ..+.+.+.-.+|.+-.+.+.++.||.+|.--.. ...|.+||+.
T Consensus 34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~--------s~~iiKydL~ 102 (255)
T smart00284 34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN--------SHDICRFDLT 102 (255)
T ss_pred CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC--------CccEEEEECC
Confidence 4567877655311 244666643 344444444577778888899999999986533 4578999999
Q ss_pred CCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC-CCceEEEEECCCCc----
Q 018336 262 TGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG-GPQEFYVVEGRNGK---- 336 (358)
Q Consensus 262 ~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~-~~~~i~~yd~~~~~---- 336 (358)
+++-.....+|...-..+... .|. .....-+++-++-|+||=....+ +.-.|-.+|+.+-+
T Consensus 103 t~~v~~~~~Lp~a~y~~~~~Y---------~~~-----~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~t 168 (255)
T smart00284 103 TETYQKEPLLNGAGYNNRFPY---------AWG-----GFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENT 168 (255)
T ss_pred CCcEEEEEecCcccccccccc---------ccC-----CCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEE
Confidence 997655454543210000000 000 00122346677888887444333 22445578887655
Q ss_pred eEeecCCCCccCceeeeeE
Q 018336 337 FRKFDVPAEYKGLVQSGCC 355 (358)
Q Consensus 337 W~~~~~p~~~~~~~~~~~~ 355 (358)
|.. .+|....+-+|-.|.
T Consensus 169 W~T-~~~k~sa~naFmvCG 186 (255)
T smart00284 169 WIT-TYNKRSASNAFMICG 186 (255)
T ss_pred EEc-CCCcccccccEEEee
Confidence 555 466666666666664
No 93
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.87 E-value=8.1 Score=36.00 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=61.2
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
.++|++|..+++=+.+...+..-.......-+.+|.+.-.... ...++.+|..++.++.+...+.. .......-|
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGI-DVNGNFVED 287 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCc-cCccEECCC
Confidence 3789999988877776543322111111112335555433221 36899999999999988755431 111223334
Q ss_pred C-EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336 235 S-EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN 270 (358)
Q Consensus 235 ~-~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~ 270 (358)
| +||+.....+ ...++.+|..+++.+++..
T Consensus 288 G~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 288 DKRIVFVSDRLG------YPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCeEeCcc
Confidence 4 5776654321 3478999999988876653
No 94
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.63 E-value=4.2 Score=34.83 Aligned_cols=143 Identities=10% Similarity=0.007 Sum_probs=83.7
Q ss_pred CCEEEEEcCcCCCCCCCCeEEEEECC-----CCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336 186 NGRVIIAGGHDENKTALSSAWAYDLI-----KDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 186 ~~~iyv~GG~~~~~~~~~~~~~yd~~-----t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
++++|++.+.... .++.|... .+.....-.+|.+-.+.+.++.||.+|.--.. ...|.+||+
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~--------s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN--------SRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecC--------CceEEEEEC
Confidence 3568888775542 45555432 33334444577777788889999999988642 568899999
Q ss_pred CCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCc---
Q 018336 261 GTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGK--- 336 (358)
Q Consensus 261 ~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~--- 336 (358)
.++.-..-..+|......+..... ......-+++-++-|+||-...++.. -.|-.+|+.+-.
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~--------------~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~ 162 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYW--------------SGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQ 162 (250)
T ss_pred cCCcEEEEEECCccccccccceec--------------CCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEE
Confidence 998655333333222110000000 00122335667888888866554432 455567877644
Q ss_pred -eEeecCCCCccCceeeeeEE
Q 018336 337 -FRKFDVPAEYKGLVQSGCCV 356 (358)
Q Consensus 337 -W~~~~~p~~~~~~~~~~~~~ 356 (358)
|.. .++....+.+|-.|.+
T Consensus 163 tw~T-~~~k~~~~naFmvCGv 182 (250)
T PF02191_consen 163 TWNT-SYPKRSAGNAFMVCGV 182 (250)
T ss_pred EEEe-ccCchhhcceeeEeeE
Confidence 654 4666666667777743
No 95
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.59 E-value=9 Score=35.83 Aligned_cols=147 Identities=13% Similarity=0.057 Sum_probs=76.7
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA 181 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 181 (358)
.++.+|..+++-..+...+... ......- +..|++....++ ..+++++|..++..+.+..-........
T Consensus 229 ~l~~~dl~~g~~~~l~~~~g~~-----~~~~~SpDG~~l~~~~s~~g-----~~~Iy~~d~~~g~~~~lt~~~~~~~~~~ 298 (433)
T PRK04922 229 AIYVQDLATGQRELVASFRGIN-----GAPSFSPDGRRLALTLSRDG-----NPEIYVMDLGSRQLTRLTNHFGIDTEPT 298 (433)
T ss_pred EEEEEECCCCCEEEeccCCCCc-----cCceECCCCCEEEEEEeCCC-----CceEEEEECCCCCeEECccCCCCccceE
Confidence 5777888777776665543311 1112222 345654432221 2479999999988776644322111111
Q ss_pred eEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeeeeEEEEC
Q 018336 182 AGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 182 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
...-+..|++...... ...++.+|..++..+.+..-. .........-+|+ |++..+.. + ...++.+|+
T Consensus 299 ~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~----~--~~~I~v~d~ 367 (433)
T PRK04922 299 WAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSG----G--QYRIAVMDL 367 (433)
T ss_pred ECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCC----C--ceeEEEEEC
Confidence 1112334555432221 246889999888887765221 1111112233454 55544321 1 237889999
Q ss_pred CCCceEEcCC
Q 018336 261 GTGEWKRAEN 270 (358)
Q Consensus 261 ~~~~W~~~~~ 270 (358)
.+++...+..
T Consensus 368 ~~g~~~~Lt~ 377 (433)
T PRK04922 368 STGSVRTLTP 377 (433)
T ss_pred CCCCeEECCC
Confidence 9888876653
No 96
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.42 E-value=9.5 Score=35.70 Aligned_cols=147 Identities=10% Similarity=0.021 Sum_probs=75.9
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECC-EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQG-KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF 180 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 180 (358)
..++.+|..++....+...+... .....+-++ .|++....++ ..++|++|..+...+.+...+......
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~-----~~~~~SPDG~~la~~~~~~g-----~~~Iy~~d~~~~~~~~Lt~~~~~~~~~ 295 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMT-----FAPRFSPDGRKVVMSLSQGG-----NTDIYTMDLRSGTTTRLTDSPAIDTSP 295 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcc-----cCcEECCCCCEEEEEEecCC-----CceEEEEECCCCceEEccCCCCccCce
Confidence 36788888888777766544321 111222233 4544433221 357999999998877775433221111
Q ss_pred eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeeeeEEEE
Q 018336 181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDESAESYQ 259 (358)
Q Consensus 181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~i~~yd 259 (358)
....-+..|++...... ...++++|..++..+.+...... .......-+|+ |++.. .... ...+..+|
T Consensus 296 ~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~~-~~~~~~SpdG~~ia~~~-~~~~-----~~~i~~~d 364 (435)
T PRK05137 296 SYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGGR-YSTPVWSPRGDLIAFTK-QGGG-----QFSIGVMK 364 (435)
T ss_pred eEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCCc-ccCeEECCCCCEEEEEE-cCCC-----ceEEEEEE
Confidence 11112344554432111 25789999888777766532211 11112233555 44433 2111 23678889
Q ss_pred CCCCceEEcC
Q 018336 260 LGTGEWKRAE 269 (358)
Q Consensus 260 ~~~~~W~~~~ 269 (358)
+.++....+.
T Consensus 365 ~~~~~~~~lt 374 (435)
T PRK05137 365 PDGSGERILT 374 (435)
T ss_pred CCCCceEecc
Confidence 8776655544
No 97
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.33 E-value=11 Score=36.04 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=54.6
Q ss_pred eEEEEeCCCCC--eeecCCCCCCCCCCC-ceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC
Q 018336 103 GVTVFDPVSLT--WDRLGPVPEYPAGLP-LFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN 176 (358)
Q Consensus 103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~-~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~ 176 (358)
.+.++|..+++ |+.-...+....... ....++..+ +.||+... ...++.+|..|.+ |+.-......
T Consensus 72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------~g~v~AlD~~TG~~~W~~~~~~~~~ 143 (488)
T cd00216 72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------DGRLVALDAETGKQVWKFGNNDQVP 143 (488)
T ss_pred cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--------CCeEEEEECCCCCEeeeecCCCCcC
Confidence 68899988765 875433221000000 111234445 78887543 2478999988764 7654322110
Q ss_pred c---eeeeeEEECCEEEEEcCcCCCC---CCCCeEEEEECCCC--ceEe
Q 018336 177 R---SFFAAGELNGRVIIAGGHDENK---TALSSAWAYDLIKD--EWTE 217 (358)
Q Consensus 177 ~---~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~--~W~~ 217 (358)
. ...+.++.++.+|+ |...... .....++++|.+|+ .|+.
T Consensus 144 ~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 144 PGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred cceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 1 11223445666554 4322110 12357899999876 4875
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.31 E-value=6.9 Score=33.84 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=51.0
Q ss_pred EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC-CCCceeeeeEE-EC-CEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336 139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM-PDNRSFFAAGE-LN-GRVIIAGGHDENKTALSSAWAYDLIKDEW 215 (358)
Q Consensus 139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (358)
.+|+.++.+ ..+.+||+.+++-...-.. ..++ .++. -+ ..+|+.++.+ ..+.+||..+++.
T Consensus 2 ~~~~s~~~d-------~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~ 65 (300)
T TIGR03866 2 KAYVSNEKD-------NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS------DTIQVIDLATGEV 65 (300)
T ss_pred cEEEEecCC-------CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC------CeEEEEECCCCcE
Confidence 466666532 3788899887764332111 1111 2222 23 4567776432 4588999988766
Q ss_pred EecCCCccCcCceeEE-EECCE-EEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 216 TELARMTQERDECEAV-VIGSE-FWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 216 ~~~~~~p~~~~~~~~~-~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
...-..... ....+ .-+++ +|+.++. ...+..||+.+.+
T Consensus 66 ~~~~~~~~~--~~~~~~~~~g~~l~~~~~~--------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 66 IGTLPSGPD--PELFALHPNGKILYIANED--------DNLVTVIDIETRK 106 (300)
T ss_pred EEeccCCCC--ccEEEECCCCCEEEEEcCC--------CCeEEEEECCCCe
Confidence 432111111 11222 22344 6665432 2357888987753
No 99
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.20 E-value=10 Score=35.44 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=58.2
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
..++++|..+++-+.+...+..-.......-+..|++....++ ...++++|..++..+.+...+..-. .....-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~-~~~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAIDT-EPFWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCcC-CeEECCC
Confidence 4799999999888777654422111111112345554432111 2579999999998887764332111 1122335
Q ss_pred CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336 235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE 269 (358)
Q Consensus 235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~ 269 (358)
|+ |++.....+ ...++.+|..+++++.+.
T Consensus 298 g~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 298 GRTLYFTSDRGG------KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 54 555432211 236888999888887764
No 100
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.18 E-value=12 Score=36.15 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=57.8
Q ss_pred eEEEEeCCCCC--eeecCCCCCCCCC----CCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeC-CCC
Q 018336 103 GVTVFDPVSLT--WDRLGPVPEYPAG----LPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRG-KNM 173 (358)
Q Consensus 103 ~~~~~d~~~~~--W~~~~~~~~~~~~----~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~-~~~ 173 (358)
.+.++|..+++ |+.-...+..... ......++..+++||+... ...++.+|..|.+ |+.- ...
T Consensus 80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------dg~l~ALDa~TGk~~W~~~~~~~ 151 (527)
T TIGR03075 80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------DARLVALDAKTGKVVWSKKNGDY 151 (527)
T ss_pred cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------CCEEEEEECCCCCEEeecccccc
Confidence 68899988764 7654433211100 0011234556788887543 2379999998875 6542 222
Q ss_pred CCC-ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEe
Q 018336 174 PDN-RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTE 217 (358)
Q Consensus 174 ~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 217 (358)
... ....+.++.++.+|+-....+. .....+..||.+|++ |+.
T Consensus 152 ~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 152 KAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEec
Confidence 111 1112334568877765322111 123579999998874 774
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.03 E-value=7.4 Score=33.62 Aligned_cols=133 Identities=18% Similarity=0.073 Sum_probs=64.1
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFA 181 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~ 181 (358)
.+..||+.+++-...-..... ........-+..+|+.++. .+.+.+||..+.+... ++....+ ..
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~~----~~~l~~~~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~---~~ 77 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQR----PRGITLSKDGKLLYVCASD-------SDTIQVIDLATGEVIGTLPSGPDP---EL 77 (300)
T ss_pred EEEEEECCCCceEEEEECCCC----CCceEECCCCCEEEEEECC-------CCeEEEEECCCCcEEEeccCCCCc---cE
Confidence 678889887764332221111 1111111123457777652 3468999998877644 3221111 12
Q ss_pred eEE-E-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEEE
Q 018336 182 AGE-L-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAESY 258 (358)
Q Consensus 182 ~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~y 258 (358)
.+. - ++.+|+.++.+ ..+.+||+.+.+- +..++.......++ .-++++++++... ...+..|
T Consensus 78 ~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~-------~~~~~~~ 142 (300)
T TIGR03866 78 FALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSET-------TNMAHFI 142 (300)
T ss_pred EEECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecC-------CCeEEEE
Confidence 222 2 34566664322 3689999987542 12122111112222 3466776666432 1134557
Q ss_pred ECCCCc
Q 018336 259 QLGTGE 264 (358)
Q Consensus 259 d~~~~~ 264 (358)
|..+.+
T Consensus 143 d~~~~~ 148 (300)
T TIGR03866 143 DTKTYE 148 (300)
T ss_pred eCCCCe
Confidence 776553
No 102
>smart00284 OLF Olfactomedin-like domains.
Probab=91.87 E-value=7.4 Score=33.27 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=47.6
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEEC----CCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDF----TTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK 212 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~----~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 212 (358)
++++|++.+... ..+.++.|.. ...++.+.-.+|.+..+.+.++++|.+|.--. ....+..||+.+
T Consensus 34 ~~~~wv~~~~~~----~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t 103 (255)
T smart00284 34 KSLYWYMPLNTR----VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTT 103 (255)
T ss_pred CceEEEEccccC----CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec------CCccEEEEECCC
Confidence 466888765421 1345666643 23333333356777778888899999998632 236799999999
Q ss_pred CceEecCCCc
Q 018336 213 DEWTELARMT 222 (358)
Q Consensus 213 ~~W~~~~~~p 222 (358)
++-.....+|
T Consensus 104 ~~v~~~~~Lp 113 (255)
T smart00284 104 ETYQKEPLLN 113 (255)
T ss_pred CcEEEEEecC
Confidence 8764333333
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.69 E-value=5.2 Score=36.39 Aligned_cols=124 Identities=12% Similarity=0.225 Sum_probs=68.6
Q ss_pred eeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeE
Q 018336 179 FFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFDESAE 256 (358)
Q Consensus 179 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~ 256 (358)
..+++.. +|.|+..|-.+ ..+.+||+.+.. .+..+|..-.....+.+ +|-.|+.-+.+ -.++.
T Consensus 350 ~ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad-------d~~V~ 414 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD-------DGSVK 414 (506)
T ss_pred eEEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec-------CCeEE
Confidence 3444443 67777776433 458999998876 66667764333334433 33344444332 22478
Q ss_pred EEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336 257 SYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK 336 (358)
Q Consensus 257 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~ 336 (358)
.||..... .+...+... ...... -.+-..|+.++++|.+ -.||.|+-.+..
T Consensus 415 lwDLRKl~--n~kt~~l~~--~~~v~s---------------------~~fD~SGt~L~~~g~~----l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 415 LWDLRKLK--NFKTIQLDE--KKEVNS---------------------LSFDQSGTYLGIAGSD----LQVYICKKKTKS 465 (506)
T ss_pred EEEehhhc--ccceeeccc--ccccee---------------------EEEcCCCCeEEeecce----eEEEEEeccccc
Confidence 88887543 222211111 000111 1233457888888753 456777888999
Q ss_pred eEee-cCCCCc
Q 018336 337 FRKF-DVPAEY 346 (358)
Q Consensus 337 W~~~-~~p~~~ 346 (358)
|+++ .++...
T Consensus 466 W~~~~~~~~~s 476 (506)
T KOG0289|consen 466 WTEIKELADHS 476 (506)
T ss_pred ceeeehhhhcc
Confidence 9999 655443
No 104
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.43 E-value=12 Score=34.92 Aligned_cols=148 Identities=11% Similarity=0.068 Sum_probs=76.2
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
..++++|..+++-+.+...+..-.......-+..|++...... ...++.+|..++..+.+..-.... ......-+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSPD 297 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFPD 297 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCc-CceEECCC
Confidence 4799999988877776654432221111112345665532221 246999999998887765432211 11122335
Q ss_pred CEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEE
Q 018336 235 SEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTL 314 (358)
Q Consensus 235 ~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~ 314 (358)
|+.+++..... + ...++.+|+.++.-..+..... ... .....-+|+.+
T Consensus 298 G~~I~f~s~~~---g--~~~Iy~~d~~~g~~~~lt~~~~----~~~-----------------------~~~~SpDG~~I 345 (429)
T PRK03629 298 SQNLAYTSDQA---G--RPQVYKVNINGGAPQRITWEGS----QNQ-----------------------DADVSSDGKFM 345 (429)
T ss_pred CCEEEEEeCCC---C--CceEEEEECCCCCeEEeecCCC----Ccc-----------------------CEEECCCCCEE
Confidence 55333332111 1 2367888888876665532210 000 01122344433
Q ss_pred EECCCCCCCCceEEEEECCCCceEee
Q 018336 315 VTGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 315 v~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
++.+...+ ...++++|+++++++.+
T Consensus 346 a~~~~~~g-~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 346 VMVSSNGG-QQHIAKQDLATGGVQVL 370 (429)
T ss_pred EEEEccCC-CceEEEEECCCCCeEEe
Confidence 33332211 25788899988888876
No 105
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.33 E-value=2.3 Score=33.77 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=51.3
Q ss_pred EEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEE-EEe
Q 018336 231 VVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCR-VEL 309 (358)
Q Consensus 231 ~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~-~~~ 309 (358)
+.+||.+|-++....... ...|.+||+.+++++..-.+|......... ..+ ++.
T Consensus 2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~----------------------~~L~~v~ 56 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDS----------------------VSLSVVR 56 (164)
T ss_pred EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCE----------------------EEEEEec
Confidence 678999999986543321 226999999999994444444332101111 122 344
Q ss_pred CCeEEEECCCCCCCCceEEEEEC---CCCceEee
Q 018336 310 GGCTLVTGSGYQGGPQEFYVVEG---RNGKFRKF 340 (358)
Q Consensus 310 ~~~i~v~gG~~~~~~~~i~~yd~---~~~~W~~~ 340 (358)
+++|.++--......-+||+.+- ....|+++
T Consensus 57 ~~~L~~~~~~~~~~~~~IWvm~~~~~~~~SWtK~ 90 (164)
T PF07734_consen 57 GDCLCVLYQCDETSKIEIWVMKKYGYGKESWTKL 90 (164)
T ss_pred CCEEEEEEeccCCccEEEEEEeeeccCcceEEEE
Confidence 77888884332222268888762 36779999
No 106
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.06 E-value=11 Score=33.90 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=60.5
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECC--CCcEEeC---CCCCCCc----eeeeeEEE--CCEEEEEcCcCCCCCCCCeE
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFT--TRRWTRG---KNMPDNR----SFFAAGEL--NGRVIIAGGHDENKTALSSA 205 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~--t~~W~~~---~~~~~~~----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 205 (358)
+..+|+.... .+.+.+|+.. +.+++.+ +.+|... .....+.. +..+|+.-. ..+.+
T Consensus 203 g~~~Yv~~e~-------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr------~~~sI 269 (345)
T PF10282_consen 203 GKYAYVVNEL-------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR------GSNSI 269 (345)
T ss_dssp SSEEEEEETT-------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC------TTTEE
T ss_pred cCEEEEecCC-------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec------cCCEE
Confidence 4678998764 3456666555 6666553 3343221 12222222 456787632 24567
Q ss_pred EEEEC--CCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336 206 WAYDL--IKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN 270 (358)
Q Consensus 206 ~~yd~--~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~ 270 (358)
.+|++ .+++.+.+...+..-.....+.+ +|+..+++..... .-.++..|.+++.+..+..
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~-----~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN-----TVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT-----EEEEEEEETTTTEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC-----eEEEEEEeCCCCcEEEecc
Confidence 78876 55677766655442222233333 5664444433211 1233444677888887764
No 107
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.94 E-value=15 Score=35.03 Aligned_cols=122 Identities=13% Similarity=0.104 Sum_probs=65.8
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCC----CCc-eeeeeEEEC-CEEEEEcCcCCCCCCCC
Q 018336 132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMP----DNR-SFFAAGELN-GRVIIAGGHDENKTALS 203 (358)
Q Consensus 132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~----~~~-~~~~~~~~~-~~iyv~GG~~~~~~~~~ 203 (358)
..+..++.||+... ...++.+|..|.+ |+.-...+ .+. .....+..+ +.+|+... ..
T Consensus 56 sPvv~~g~vy~~~~--------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g 120 (488)
T cd00216 56 TPLVVDGDMYFTTS--------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DG 120 (488)
T ss_pred CCEEECCEEEEeCC--------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CC
Confidence 34566889998754 2368888988654 87633222 111 111234446 78887532 24
Q ss_pred eEEEEECCCC--ceEecCCCcc-C--cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEc
Q 018336 204 SAWAYDLIKD--EWTELARMTQ-E--RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRA 268 (358)
Q Consensus 204 ~~~~yd~~t~--~W~~~~~~p~-~--~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~ 268 (358)
.++++|.+|+ .|+.-...+. . ....+.++.++.+|+-..............++++|..+++ |+.-
T Consensus 121 ~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 121 RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 6999999865 4886432221 0 0122345666666653211100000123578999998774 8753
No 108
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.84 E-value=8.7 Score=32.16 Aligned_cols=203 Identities=13% Similarity=0.109 Sum_probs=107.3
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA 182 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~ 182 (358)
.+..+||..+.-.+.-.-... ..--+..+.++.-++.||- -..+.+||..|.+--+- +......-.+
T Consensus 40 tvrLWNp~rg~liktYsghG~----EVlD~~~s~Dnskf~s~Gg-------Dk~v~vwDV~TGkv~Rr--~rgH~aqVNt 106 (307)
T KOG0316|consen 40 TVRLWNPLRGALIKTYSGHGH----EVLDAALSSDNSKFASCGG-------DKAVQVWDVNTGKVDRR--FRGHLAQVNT 106 (307)
T ss_pred eEEeecccccceeeeecCCCc----eeeeccccccccccccCCC-------CceEEEEEcccCeeeee--cccccceeeE
Confidence 566677777654333221110 1111223334433444432 35799999999764221 1111111222
Q ss_pred EEEC--CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336 183 GELN--GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 183 ~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
+.++ ..+.+-|+.+ ..+.++|-.+++.+.+.-+...+.+...+.+.+...+.|..++ .+..||+
T Consensus 107 V~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG--------tvRtydi 172 (307)
T KOG0316|consen 107 VRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG--------TVRTYDI 172 (307)
T ss_pred EEecCcceEEEecccc------ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC--------cEEEEEe
Confidence 3343 3455555544 4599999999999988888888888888899999888876532 3567887
Q ss_pred CCCceEE--cCCcccc--CCCCCceeee---------eecCccCce-eccccc--eeeceEEEEeCCeEEEECCCCCCCC
Q 018336 261 GTGEWKR--AENAWKL--SQCPRSNVGV---------GREGKLFCW-AETEAA--VQFGTCRVELGGCTLVTGSGYQGGP 324 (358)
Q Consensus 261 ~~~~W~~--~~~~p~~--~~~~~~~~~~---------~~d~~~~~W-~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~ 324 (358)
..++-.. +.. |.. ....-+.+.+ .+|.++.+- +...-. .-+-.-++..+..-.|++|..++
T Consensus 173 R~G~l~sDy~g~-pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG-- 249 (307)
T KOG0316|consen 173 RKGTLSSDYFGH-PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG-- 249 (307)
T ss_pred ecceeehhhcCC-cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc--
Confidence 6654321 111 000 0000111111 445554443 111100 11333455566667788887654
Q ss_pred ceEEEEECCCCc
Q 018336 325 QEFYVVEGRNGK 336 (358)
Q Consensus 325 ~~i~~yd~~~~~ 336 (358)
-++.||....+
T Consensus 250 -~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 250 -KVYFWDLVDET 260 (307)
T ss_pred -eEEEEEeccce
Confidence 68888877554
No 109
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.58 E-value=6 Score=35.23 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=35.7
Q ss_pred cceEEEEeCCCCCeeecCCCCCC-CC--CC-CceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe
Q 018336 101 SYGVTVFDPVSLTWDRLGPVPEY-PA--GL-PLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR 169 (358)
Q Consensus 101 ~~~~~~~d~~~~~W~~~~~~~~~-~~--~~-~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~ 169 (358)
..-+..||+.+.+-..--.+|.. |. .. +...++..-+..+||..- .+..++-+-|...++...
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~------TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF------TPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE------SSSEEEEEEETTTTEEEE
T ss_pred eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc------CCCCeEEEEECCCCceee
Confidence 45688999999864332222321 21 11 112222223456777643 357799999999988754
No 110
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.45 E-value=13 Score=34.35 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=72.5
Q ss_pred ceEEEEeCCCCCeee-cCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcE-EeCCCCCCCcee
Q 018336 102 YGVTVFDPVSLTWDR-LGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW-TRGKNMPDNRSF 179 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~ 179 (358)
-.+..|+..+.+-.. +..+.. ..+.+....+|.++..|+.. ..+-+||..++.- +.+..-..|...
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD~s-------G~V~vfD~k~r~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGDES-------GHVKVFDMKSRVILRQLYAHQAPVHV 115 (487)
T ss_pred cEEEEEecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccCCc-------CcEEEeccccHHHHHHHhhccCceeE
Confidence 467888887765433 222222 22333344579999999853 3689999444221 111121222221
Q ss_pred eeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceE-ecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEE
Q 018336 180 FAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT-ELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESY 258 (358)
Q Consensus 180 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~y 258 (358)
--....++.+++.|+-+. .+..+|..+..-+ .+..........+....++.|.+.||+++ .|-.|
T Consensus 116 ~~f~~~d~t~l~s~sDd~------v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg--------~vrl~ 181 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDK------VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG--------KVRLW 181 (487)
T ss_pred EEecccCCeEEEecCCCc------eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc--------eEEEE
Confidence 222236788888876432 2444454444311 11111111111233467889999999853 46778
Q ss_pred ECCCC-ceE
Q 018336 259 QLGTG-EWK 266 (358)
Q Consensus 259 d~~~~-~W~ 266 (358)
|..+. .|.
T Consensus 182 DtR~~~~~v 190 (487)
T KOG0310|consen 182 DTRSLTSRV 190 (487)
T ss_pred EeccCCcee
Confidence 88876 443
No 111
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.32 E-value=15 Score=33.97 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=78.9
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF 180 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 180 (358)
..++.+|..+++-..+....... ......-+ ..|++.....+ ...++++|..++..+.+..........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~-----~~~~~spDg~~l~~~~~~~~-----~~~i~~~d~~~~~~~~l~~~~~~~~~~ 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMN-----GAPAFSPDGSKLAVSLSKDG-----NPDIYVMDLDGKQLTRLTNGPGIDTEP 283 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCc-----cceEECCCCCEEEEEECCCC-----CccEEEEECCCCCEEECCCCCCCCCCE
Confidence 35778888877666554433211 11122223 34655433221 347999999998877775433221111
Q ss_pred eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336 181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
....-+..|++...... ...++.+|..++.++.+....... ......-+|+.+++...... ...++.+|+
T Consensus 284 ~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~~~-~~~~~spdg~~i~~~~~~~~-----~~~i~~~d~ 353 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGGYN-ASPSWSPDGDLIAFVHREGG-----GFNIAVMDL 353 (417)
T ss_pred EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCCc-cCeEECCCCCEEEEEEccCC-----ceEEEEEeC
Confidence 11112344555432221 247899999888887665321111 11122345665555543221 346889999
Q ss_pred CCCceEEcCC
Q 018336 261 GTGEWKRAEN 270 (358)
Q Consensus 261 ~~~~W~~~~~ 270 (358)
.++.++.+..
T Consensus 354 ~~~~~~~l~~ 363 (417)
T TIGR02800 354 DGGGERVLTD 363 (417)
T ss_pred CCCCeEEccC
Confidence 9877776654
No 112
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.22 E-value=27 Score=35.34 Aligned_cols=121 Identities=13% Similarity=0.201 Sum_probs=62.2
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCc-----eeeee------------------EEEC
Q 018336 132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNR-----SFFAA------------------GELN 186 (358)
Q Consensus 132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~-----~~~~~------------------~~~~ 186 (358)
.-+.+++.||+... .+.++.+|..|.+ |+.-+..+..- .+-+. +..+
T Consensus 189 TPlvvgg~lYv~t~--------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~ 260 (764)
T TIGR03074 189 TPLKVGDTLYLCTP--------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCA 260 (764)
T ss_pred CCEEECCEEEEECC--------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccC
Confidence 44567999999865 3467777777654 76544332110 00011 1234
Q ss_pred CEEEEEcCcCCCCCCCCeEEEEECCCCc--eEe-----------cCCCccCc--CceeEEEECCEEEEEeCcccC--CCC
Q 018336 187 GRVIIAGGHDENKTALSSAWAYDLIKDE--WTE-----------LARMTQER--DECEAVVIGSEFWVVSGYKTE--RQG 249 (358)
Q Consensus 187 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~-----------~~~~p~~~--~~~~~~~~~~~lyv~gG~~~~--~~~ 249 (358)
++||+. ..+ ..++.+|.+|++ |.. +.+.+... ....-++.++.+|+ |+.... ...
T Consensus 261 ~rV~~~-T~D------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~ 332 (764)
T TIGR03074 261 RRIILP-TSD------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTD 332 (764)
T ss_pred CEEEEe-cCC------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eeccccccccc
Confidence 456553 211 347777777654 532 11222111 12233577887777 432111 111
Q ss_pred ceeeeeEEEECCCCc--eEEc
Q 018336 250 IFDESAESYQLGTGE--WKRA 268 (358)
Q Consensus 250 ~~~~~i~~yd~~~~~--W~~~ 268 (358)
.....|..||.++++ |+.-
T Consensus 333 ~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 333 EPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred CCCcEEEEEECCCCcEeeEEe
Confidence 224578999999885 7654
No 113
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=88.20 E-value=38 Score=35.82 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=84.7
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC----------CC--Ccee-eeeEEE--CCEEEEEcCcCCCCCC
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM----------PD--NRSF-FAAGEL--NGRVIIAGGHDENKTA 201 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~----------~~--~~~~-~~~~~~--~~~iyv~GG~~~~~~~ 201 (358)
++.+|+.... .+.+++||+.++....+..- .. .... .+.+.. ++.||+....
T Consensus 694 ~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------ 760 (1057)
T PLN02919 694 NEKVYIAMAG-------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------ 760 (1057)
T ss_pred CCeEEEEECC-------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------
Confidence 6789988542 35799999987765433210 00 0011 122222 3469988532
Q ss_pred CCeEEEEECCCCceEecC---C-Ccc--------------C-cCc-eeEE-EECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336 202 LSSAWAYDLIKDEWTELA---R-MTQ--------------E-RDE-CEAV-VIGSEFWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 202 ~~~~~~yd~~t~~W~~~~---~-~p~--------------~-~~~-~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
.+.+.+||+.++.-..+. + .+. . ... .+++ .-+|.+||.... ...|.+||+
T Consensus 761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~--------N~rIrviD~ 832 (1057)
T PLN02919 761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY--------NHKIKKLDP 832 (1057)
T ss_pred CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC--------CCEEEEEEC
Confidence 257999999876533211 0 000 0 001 1222 345779988643 457899999
Q ss_pred CCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceE-EEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336 261 GTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTC-RVELGGCTLVTGSGYQGGPQEFYVVEGRNGK 336 (358)
Q Consensus 261 ~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~-~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~ 336 (358)
.++....+......+ .. . ...++........ ++.-+|+|||.-..+ +.|.++|..+++
T Consensus 833 ~tg~v~tiaG~G~~G-~~-d------------G~~~~a~l~~P~GIavd~dG~lyVaDt~N----n~Irvid~~~~~ 891 (1057)
T PLN02919 833 ATKRVTTLAGTGKAG-FK-D------------GKALKAQLSEPAGLALGENGRLFVADTNN----SLIRYLDLNKGE 891 (1057)
T ss_pred CCCeEEEEeccCCcC-CC-C------------CcccccccCCceEEEEeCCCCEEEEECCC----CEEEEEECCCCc
Confidence 988777655321100 00 0 0000000111122 233478899986554 689999998876
No 114
>PRK13684 Ycf48-like protein; Provisional
Probab=88.11 E-value=19 Score=32.33 Aligned_cols=90 Identities=10% Similarity=0.147 Sum_probs=45.6
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEE-EECCCCce
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWA-YDLIKDEW 215 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-yd~~t~~W 215 (358)
++.+++.|. ...+++-+-.-.+|+.+...... .-+.+....+..|++.|... .++. .+....+|
T Consensus 142 ~~~~~~~g~--------~G~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW 206 (334)
T PRK13684 142 PGTAEMATN--------VGAIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAW 206 (334)
T ss_pred CCcceeeec--------cceEEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeE
Confidence 344666654 22466656566799987643322 22333333333344433221 2332 24455679
Q ss_pred EecCCCccCcCceeEE-EECCEEEEEeC
Q 018336 216 TELARMTQERDECEAV-VIGSEFWVVSG 242 (358)
Q Consensus 216 ~~~~~~p~~~~~~~~~-~~~~~lyv~gG 242 (358)
+.+.. +....-..++ .-+++++++|.
T Consensus 207 ~~~~~-~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 207 TPHQR-NSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred EEeeC-CCcccceeeeEcCCCCEEEEec
Confidence 98754 3333333433 34677888863
No 115
>PRK02889 tolB translocation protein TolB; Provisional
Probab=88.11 E-value=23 Score=33.12 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=53.9
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
..++++|..+.+=+.+...+..........-+..|++....+. ...++.+|..++..+.+..-.. ........-|
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpD 294 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPD 294 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCC-CCcCeEEcCC
Confidence 4699999988876666544322111111112345555433222 3578999998877666643221 1111223445
Q ss_pred CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336 235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE 269 (358)
Q Consensus 235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~ 269 (358)
|+ |++..... . ...++.+|..++..+.+.
T Consensus 295 G~~l~f~s~~~--g----~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 295 GRSIYFTSDRG--G----APQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCEEEEEecCC--C----CcEEEEEECCCCceEEEe
Confidence 65 44433211 1 235777887777666554
No 116
>PRK04043 tolB translocation protein TolB; Provisional
Probab=87.53 E-value=24 Score=32.85 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=86.9
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF 180 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 180 (358)
..++.+|..+++=+.+...+.. ......+-+ .+|.+.....+ ..++|++|..++.++.+...+..-...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~-----~~~~~~SPDG~~la~~~~~~g-----~~~Iy~~dl~~g~~~~LT~~~~~d~~p 282 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM-----LVVSDVSKDGSKLLLTMAPKG-----QPDIYLYDTNTKTLTQITNYPGIDVNG 282 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc-----EEeeEECCCCCEEEEEEccCC-----CcEEEEEECCCCcEEEcccCCCccCcc
Confidence 3788999988877777653331 111122223 35554433221 358999999999998886554311112
Q ss_pred eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCC-CCceeeeeEEEE
Q 018336 181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTER-QGIFDESAESYQ 259 (358)
Q Consensus 181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~-~~~~~~~i~~yd 259 (358)
....-+..||+.....+ ...++++|..++..+++..... .. ....-+|+..++....... .+.....++.+|
T Consensus 283 ~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d 355 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS 355 (419)
T ss_pred EECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence 22223456777653321 3579999999998877653211 12 2344466643443322111 001135789999
Q ss_pred CCCCceEEcCCc
Q 018336 260 LGTGEWKRAENA 271 (358)
Q Consensus 260 ~~~~~W~~~~~~ 271 (358)
+.++.++.+..-
T Consensus 356 ~~~g~~~~LT~~ 367 (419)
T PRK04043 356 TNSDYIRRLTAN 367 (419)
T ss_pred CCCCCeEECCCC
Confidence 999998887653
No 117
>PRK03629 tolB translocation protein TolB; Provisional
Probab=87.45 E-value=25 Score=32.87 Aligned_cols=148 Identities=9% Similarity=0.041 Sum_probs=74.2
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA 181 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 181 (358)
.++.+|..+++-..+...+... ......-+ ..|++.....+ ..+++++|..+++.+.+...........
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~~-----~~~~~SPDG~~La~~~~~~g-----~~~I~~~d~~tg~~~~lt~~~~~~~~~~ 293 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRHN-----GAPAFSPDGSKLAFALSKTG-----SLNLYVMDLASGQIRQVTDGRSNNTEPT 293 (429)
T ss_pred EEEEEECCCCCeEEccCCCCCc-----CCeEECCCCCEEEEEEcCCC-----CcEEEEEECCCCCEEEccCCCCCcCceE
Confidence 4556666666555554433311 11122223 34555433211 2469999999988877754332211111
Q ss_pred eEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECC
Q 018336 182 AGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLG 261 (358)
Q Consensus 182 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~ 261 (358)
...-+..|++...... ...++.+|+.++.-+.+...... .......-+|+.+++.+.... ...++.+|+.
T Consensus 294 wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~~-~~~~~~SpDG~~Ia~~~~~~g-----~~~I~~~dl~ 363 (429)
T PRK03629 294 WFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGSQ-NQDADVSSDGKFMVMVSSNGG-----QQHIAKQDLA 363 (429)
T ss_pred ECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCCC-ccCEEECCCCCEEEEEEccCC-----CceEEEEECC
Confidence 1112334544432111 24788889988776665422111 111222345654444332211 2367889999
Q ss_pred CCceEEcCC
Q 018336 262 TGEWKRAEN 270 (358)
Q Consensus 262 ~~~W~~~~~ 270 (358)
+++++.+..
T Consensus 364 ~g~~~~Lt~ 372 (429)
T PRK03629 364 TGGVQVLTD 372 (429)
T ss_pred CCCeEEeCC
Confidence 998887764
No 118
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.35 E-value=24 Score=31.48 Aligned_cols=137 Identities=15% Similarity=0.055 Sum_probs=63.2
Q ss_pred eEEEEeCCC-CCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECC-CCcEEeCCCCCCCce-e
Q 018336 103 GVTVFDPVS-LTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT-TRRWTRGKNMPDNRS-F 179 (358)
Q Consensus 103 ~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~-~ 179 (358)
.+..||..+ +++..+...+.... +...+...-+..||+.+.. ...+.+|+.. +.++..+...+.+.. .
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~~~--~~~l~~spd~~~lyv~~~~-------~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVPGQ--VQPMVISPDKRHLYVGVRP-------EFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred CEEEEEECCCCceeeeeEEecCCC--CccEEECCCCCEEEEEECC-------CCcEEEEEECCCCceEEeeeecCCCCce
Confidence 567777753 46655544433211 1111122224567775441 2457777775 456665543332221 2
Q ss_pred eeeEEECC-EEEEEcCcCCCCCCCCeEEEEECCCC-ce-EecCCCccCcCceeEE-EECCE-EEEEeCcccCCCCceeee
Q 018336 180 FAAGELNG-RVIIAGGHDENKTALSSAWAYDLIKD-EW-TELARMTQERDECEAV-VIGSE-FWVVSGYKTERQGIFDES 254 (358)
Q Consensus 180 ~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~-~W-~~~~~~p~~~~~~~~~-~~~~~-lyv~gG~~~~~~~~~~~~ 254 (358)
+.+..-++ .+|+.. +. .+.+.+|+..++ .- +.+...+.....+.++ .-+++ +|+.. .. .+.
T Consensus 84 ~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~-~~-------~~~ 149 (330)
T PRK11028 84 HISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC-LK-------EDR 149 (330)
T ss_pred EEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee-CC-------CCE
Confidence 22222234 566663 22 246788887643 11 1222222211223332 22444 55544 21 356
Q ss_pred eEEEECCC
Q 018336 255 AESYQLGT 262 (358)
Q Consensus 255 i~~yd~~~ 262 (358)
+.+||..+
T Consensus 150 v~v~d~~~ 157 (330)
T PRK11028 150 IRLFTLSD 157 (330)
T ss_pred EEEEEECC
Confidence 88899876
No 119
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.13 E-value=21 Score=30.78 Aligned_cols=60 Identities=10% Similarity=0.209 Sum_probs=40.0
Q ss_pred CeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCc
Q 018336 203 SSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENA 271 (358)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~ 271 (358)
..++.||+.+..|.+.+ +|......-...+ .|++++.-- -.+.|..||+++.+++.++..
T Consensus 254 g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~sea--------~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 254 GSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSEA--------DAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred ceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeecc--------ccCceeecCcccceEEEecCC
Confidence 47899999999999876 3332222233334 445665421 145789999999999988753
No 120
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.39 E-value=26 Score=31.01 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=84.3
Q ss_pred EEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC-CCCCCceeeee
Q 018336 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK-NMPDNRSFFAA 182 (358)
Q Consensus 104 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~ 182 (358)
++.=+-.-.+|.....-...... .+...+...++..|++|.. .-++.-.-.-.+|++++ +.+.+-..+..
T Consensus 39 il~T~DGG~tW~~~~~~~~~~~~-~~l~~I~f~~~~g~ivG~~--------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i 109 (302)
T PF14870_consen 39 ILKTTDGGKTWQPVSLDLDNPFD-YHLNSISFDGNEGWIVGEP--------GLLLHTTDGGKTWERVPLSSKLPGSPFGI 109 (302)
T ss_dssp EEEESSTTSS-EE-----S------EEEEEEEETTEEEEEEET--------TEEEEESSTTSS-EE----TT-SS-EEEE
T ss_pred EEEECCCCccccccccCCCccce-eeEEEEEecCCceEEEcCC--------ceEEEecCCCCCcEEeecCCCCCCCeeEE
Confidence 34344444679877532221111 2233455567888988742 23444444567899985 23334333444
Q ss_pred EE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE-ECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336 183 GE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV-IGSEFWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 183 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~-~~~~lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
.. -++.+++++.. ..++.=.-.-.+|+.+..-... ....+.. -+|++++++ ..+. .....|+
T Consensus 110 ~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs-~~G~-------~~~s~~~ 173 (302)
T PF14870_consen 110 TALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVS-SRGN-------FYSSWDP 173 (302)
T ss_dssp EEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEE-TTSS-------EEEEE-T
T ss_pred EEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEE-Cccc-------EEEEecC
Confidence 33 45677776532 2355544456689986532221 1122333 355555454 2211 2345677
Q ss_pred CCCceEEcCCccccCCCCCceeeeeec--------------------CccCceec--ccccee-ec-eEEE-EeCCeEEE
Q 018336 261 GTGEWKRAENAWKLSQCPRSNVGVGRE--------------------GKLFCWAE--TEAAVQ-FG-TCRV-ELGGCTLV 315 (358)
Q Consensus 261 ~~~~W~~~~~~p~~~~~~~~~~~~~~d--------------------~~~~~W~~--lp~~~r-~~-~~~~-~~~~~i~v 315 (358)
....|+..... ..+....+.|+ ....+|.+ .|.... ++ ..++ .-++.+++
T Consensus 174 G~~~w~~~~r~-----~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 174 GQTTWQPHNRN-----SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA 248 (302)
T ss_dssp T-SS-EEEE-------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred CCccceEEccC-----ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence 77778877654 22333333222 24455633 343222 22 2233 34688999
Q ss_pred ECCCCCCCCceEEEEECCCCceEee
Q 018336 316 TGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 316 ~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
.||.. .+++=.=.-++|++.
T Consensus 249 ~gg~G-----~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 249 VGGSG-----TLLVSTDGGKTWQKD 268 (302)
T ss_dssp EESTT------EEEESSTTSS-EE-
T ss_pred EeCCc-----cEEEeCCCCccceEC
Confidence 99862 444333445669988
No 121
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.20 E-value=22 Score=31.82 Aligned_cols=37 Identities=16% Similarity=-0.045 Sum_probs=25.9
Q ss_pred cCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCC
Q 018336 73 SGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPE 122 (358)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~ 122 (358)
++..+.++|+.... +..++-+.|...++-...-+.|.
T Consensus 102 ls~dgk~~~V~N~T-------------Pa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 102 LSADGKFLYVQNFT-------------PATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp E-TTSSEEEEEEES-------------SSEEEEEEETTTTEEEEEEEGTS
T ss_pred EccCCcEEEEEccC-------------CCCeEEEEECCCCceeeeecCCC
Confidence 34467788887765 45689999999998765544443
No 122
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=84.45 E-value=25 Score=32.71 Aligned_cols=103 Identities=14% Similarity=0.278 Sum_probs=64.7
Q ss_pred CCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCce
Q 018336 202 LSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSN 281 (358)
Q Consensus 202 ~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~ 281 (358)
...+|+=.....+++++-+|+.... .-+.+++++|.+.-..+.+ .++.-|++.+--.+..++..- .+|
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~vS--~PmIV~~RvYFlsD~eG~G------nlYSvdldGkDlrrHTnFtdY--Y~R-- 272 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNVS--SPMIVGERVYFLSDHEGVG------NLYSVDLDGKDLRRHTNFTDY--YPR-- 272 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCcC--CceEEcceEEEEecccCcc------ceEEeccCCchhhhcCCchhc--ccc--
Confidence 4566765555567888777776544 3467899999997655433 456666665544444443221 111
Q ss_pred eeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee--cCCCC
Q 018336 282 VGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF--DVPAE 345 (358)
Q Consensus 282 ~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~--~~p~~ 345 (358)
-+..+|+-.||.-- .+||.|||++++-+++ .||-.
T Consensus 273 ------------------------~~nsDGkrIvFq~~-----GdIylydP~td~lekldI~lpl~ 309 (668)
T COG4946 273 ------------------------NANSDGKRIVFQNA-----GDIYLYDPETDSLEKLDIGLPLD 309 (668)
T ss_pred ------------------------ccCCCCcEEEEecC-----CcEEEeCCCcCcceeeecCCccc
Confidence 24455665565332 3899999999999998 56644
No 123
>PTZ00421 coronin; Provisional
Probab=83.81 E-value=41 Score=32.12 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=52.4
Q ss_pred CEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeE-EECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336 138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAG-ELNGRVIIAGGHDENKTALSSAWAYDLIKDEW 215 (358)
Q Consensus 138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (358)
+.+++.|+.+ ..+.+||..+.+-.. +...... -.+++ ..++.+++.|+.+ ..+.+||+.++.-
T Consensus 138 ~~iLaSgs~D-------gtVrIWDl~tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGAD-------MVVNVWDVERGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCC-------CEEEEEECCCCeEEEEEcCCCCc--eEEEEEECCCCEEEEecCC------CEEEEEECCCCcE
Confidence 3566666643 368899988765321 2111111 11111 2356777777654 3588999987642
Q ss_pred E-ecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 216 T-ELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 216 ~-~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
. .+...............++..++.+|.+... ...+..||+.+.
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~----Dr~VklWDlr~~ 247 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ----QRQIMLWDTRKM 247 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCCC----CCeEEEEeCCCC
Confidence 2 2211111111111112244455555554322 235788888653
No 124
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=83.07 E-value=21 Score=28.19 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=48.5
Q ss_pred EEECCEEEEEcCcCCCCCCCCeEEEEECCCCce-EecCCCccCcC----ceeEE-EECCEEEEEeCcccCCCCceeeeeE
Q 018336 183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEW-TELARMTQERD----ECEAV-VIGSEFWVVSGYKTERQGIFDESAE 256 (358)
Q Consensus 183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~~~----~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~ 256 (358)
+.++|.+|.++...... ....+..||+.++++ +.++ +|.... ...+. +.+++|-++--.... ..-.|+
T Consensus 2 V~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~-lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~----~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLP-LPFCNDDDDDSVSLSVVRGDCLCVLYQCDET----SKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCC-CceEEEEEeccccccCCEEC-CCCccCccCCEEEEEEecCCEEEEEEeccCC----ccEEEE
Confidence 56899999987654432 112699999999999 5554 443322 22332 337787777432111 123455
Q ss_pred EEE---CCCCceEEcCCc
Q 018336 257 SYQ---LGTGEWKRAENA 271 (358)
Q Consensus 257 ~yd---~~~~~W~~~~~~ 271 (358)
+-+ ....+|+++-..
T Consensus 76 vm~~~~~~~~SWtK~~~i 93 (164)
T PF07734_consen 76 VMKKYGYGKESWTKLFTI 93 (164)
T ss_pred EEeeeccCcceEEEEEEE
Confidence 544 236789987654
No 125
>PLN00181 protein SPA1-RELATED; Provisional
Probab=82.87 E-value=59 Score=33.21 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=49.9
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDE 214 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (358)
++.+++.|+.+ ..+.+||..+..-.. .+.....-.+... -++..++.|+.+ ..+.+||..+..
T Consensus 587 ~~~~L~Sgs~D-------g~v~iWd~~~~~~~~--~~~~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~ 651 (793)
T PLN00181 587 DPTLLASGSDD-------GSVKLWSINQGVSIG--TIKTKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPK 651 (793)
T ss_pred CCCEEEEEcCC-------CEEEEEECCCCcEEE--EEecCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCC
Confidence 45677777643 368888887643211 1111111111111 246677777644 358999987642
Q ss_pred --eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336 215 --WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT 262 (358)
Q Consensus 215 --W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~ 262 (358)
...+..... .-..+...++..++.|+.+ ..+..||+..
T Consensus 652 ~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D--------~~ikiWd~~~ 691 (793)
T PLN00181 652 LPLCTMIGHSK--TVSYVRFVDSSTLVSSSTD--------NTLKLWDLSM 691 (793)
T ss_pred ccceEecCCCC--CEEEEEEeCCCEEEEEECC--------CEEEEEeCCC
Confidence 222211111 1112234466666666542 2466788764
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.54 E-value=28 Score=29.45 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=28.1
Q ss_pred cCccCcee--ccccce-eeceEEEEeCCeEEEECCCCCCCCceEEEEECC-CCceEee
Q 018336 287 EGKLFCWA--ETEAAV-QFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGR-NGKFRKF 340 (358)
Q Consensus 287 d~~~~~W~--~lp~~~-r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~-~~~W~~~ 340 (358)
+.+..+|+ .|-..+ -..+..-.+-|.|+.++|-+ +.+.++... .++|+++
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd----Nkvtlwke~~~Gkw~~v 294 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD----NKVTLWKENVDGKWEEV 294 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCC----cEEEEEEeCCCCcEEEc
Confidence 56678882 222211 23333444445555554433 678888766 4589998
No 127
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=81.01 E-value=32 Score=30.58 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=73.1
Q ss_pred ceEEEEeCCCC-----CeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc-EEeCCCCCC
Q 018336 102 YGVTVFDPVSL-----TWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR-WTRGKNMPD 175 (358)
Q Consensus 102 ~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~ 175 (358)
-.+..|+.... +...+.....+. + -.+++..+++|.+..| +.+.+|+...++ +.....+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g---~-V~ai~~~~~~lv~~~g---------~~l~v~~l~~~~~l~~~~~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKG---P-VTAICSFNGRLVVAVG---------NKLYVYDLDNSKTLLKKAFYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-----EEEEEEETTEEEEEET---------TEEEEEEEETTSSEEEEEEE-B
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecC---c-ceEhhhhCCEEEEeec---------CEEEEEEccCcccchhhheecc
Confidence 46888888874 455443322211 1 2366777888666655 378999998888 877766655
Q ss_pred CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEE
Q 018336 176 NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVV 240 (358)
Q Consensus 176 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~ 240 (358)
+-......+.++.|++.--.. .-.+..|+.+..+-..++.-..++...++..+ ++..++.
T Consensus 129 ~~~i~sl~~~~~~I~vgD~~~-----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 129 PFYITSLSVFKNYILVGDAMK-----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp SSSEEEEEEETTEEEEEESSS-----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred eEEEEEEeccccEEEEEEccc-----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence 556666667788666542211 12455678877777777755556665566666 6653333
No 128
>PTZ00420 coronin; Provisional
Probab=80.27 E-value=60 Score=31.61 Aligned_cols=104 Identities=11% Similarity=0.189 Sum_probs=50.9
Q ss_pred EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceE-
Q 018336 139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWT- 216 (358)
Q Consensus 139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~- 216 (358)
.+++.|+.+ ..+.+||..+.+-.. .+..+..-.+++. .++.+++.++.+ ..+.+||+.++.=.
T Consensus 139 ~iLaSgS~D-------gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 139 YIMCSSGFD-------SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEIAS 203 (568)
T ss_pred eEEEEEeCC-------CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcEEE
Confidence 455566643 368889988765211 1111111112222 367777766533 35899999875421
Q ss_pred ecCCCccCcCceeEEE-----ECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336 217 ELARMTQERDECEAVV-----IGSEFWVVSGYKTERQGIFDESAESYQLGT 262 (358)
Q Consensus 217 ~~~~~p~~~~~~~~~~-----~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~ 262 (358)
.+......+ ....+. -++..++.+|++... ...+..||..+
T Consensus 204 tl~gH~g~~-~s~~v~~~~fs~d~~~IlTtG~d~~~----~R~VkLWDlr~ 249 (568)
T PTZ00420 204 SFHIHDGGK-NTKNIWIDGLGGDDNYILSTGFSKNN----MREMKLWDLKN 249 (568)
T ss_pred EEecccCCc-eeEEEEeeeEcCCCCEEEEEEcCCCC----ccEEEEEECCC
Confidence 111111111 011111 255566666665432 23578888874
No 129
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.24 E-value=50 Score=30.68 Aligned_cols=104 Identities=14% Similarity=0.227 Sum_probs=55.1
Q ss_pred EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC-c--eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336 135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN-R--SFFAAGELNGRVIIAGGHDENKTALSSAWAYDLI 211 (358)
Q Consensus 135 ~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 211 (358)
..++.+++.|+-+ ..+-.+|..+..- .+ .+... - ...+....++.|++.|||++. +..||+.
T Consensus 120 ~~d~t~l~s~sDd-------~v~k~~d~s~a~v-~~-~l~~htDYVR~g~~~~~~~hivvtGsYDg~------vrl~DtR 184 (487)
T KOG0310|consen 120 PQDNTMLVSGSDD-------KVVKYWDLSTAYV-QA-ELSGHTDYVRCGDISPANDHIVVTGSYDGK------VRLWDTR 184 (487)
T ss_pred ccCCeEEEecCCC-------ceEEEEEcCCcEE-EE-EecCCcceeEeeccccCCCeEEEecCCCce------EEEEEec
Confidence 4578888888732 1334445544442 11 11111 1 112222346889999999864 8899998
Q ss_pred CCceEecCCCccCcCceeEEEEC-CEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 212 KDEWTELARMTQERDECEAVVIG-SEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 212 t~~W~~~~~~p~~~~~~~~~~~~-~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
+.+ ..+-.+.....--.++.+. |.+++.+|- +.+-+||..++
T Consensus 185 ~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG---------n~vkVWDl~~G 227 (487)
T KOG0310|consen 185 SLT-SRVVELNHGCPVESVLALPSGSLIASAGG---------NSVKVWDLTTG 227 (487)
T ss_pred cCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC---------CeEEEEEecCC
Confidence 774 2223333322222344443 356665543 25677888765
No 130
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=78.92 E-value=72 Score=31.68 Aligned_cols=142 Identities=15% Similarity=0.244 Sum_probs=77.1
Q ss_pred cceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE--
Q 018336 154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-- 231 (358)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-- 231 (358)
+..+.+|+-.+.+......-...+.......-++++.+.|+-+. .+.+||..++-.. ..+.....+++++
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg------KVKvWn~~SgfC~--vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG------KVKVWNTQSGFCF--VTFTEHTSGVTAVQF 400 (893)
T ss_pred cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC------cEEEEeccCceEE--EEeccCCCceEEEEE
Confidence 34566666555554333222233333333334788888887553 4888998876332 1233333444444
Q ss_pred EECCEEEEEeCcccCCCCceeeeeEEEECCCC-ceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeC
Q 018336 232 VIGSEFWVVSGYKTERQGIFDESAESYQLGTG-EWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELG 310 (358)
Q Consensus 232 ~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~-~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~ 310 (358)
...|+..+....+ ..+-+||+... .+..+..+ .+. .+.+.++-..
T Consensus 401 ~~~g~~llssSLD--------GtVRAwDlkRYrNfRTft~P-----~p~---------------------QfscvavD~s 446 (893)
T KOG0291|consen 401 TARGNVLLSSSLD--------GTVRAWDLKRYRNFRTFTSP-----EPI---------------------QFSCVAVDPS 446 (893)
T ss_pred EecCCEEEEeecC--------CeEEeeeecccceeeeecCC-----Cce---------------------eeeEEEEcCC
Confidence 4455555554332 34667887754 23333221 111 1222233344
Q ss_pred CeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 311 ~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
|.|.+.|+.+. -+|++++.++++--.+
T Consensus 447 GelV~AG~~d~---F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 447 GELVCAGAQDS---FEIFVWSVQTGQLLDI 473 (893)
T ss_pred CCEEEeeccce---EEEEEEEeecCeeeeh
Confidence 88988888643 4788999999986666
No 131
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=78.81 E-value=52 Score=30.02 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=55.8
Q ss_pred CCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCC-----CCCC--ceeeeeE
Q 018336 111 SLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKN-----MPDN--RSFFAAG 183 (358)
Q Consensus 111 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~-----~~~~--~~~~~~~ 183 (358)
.+.|..+.... ..+..++..+|++|++.. ...+++++..- +-.++.+ +... ....-.+
T Consensus 189 ~~~Wt~l~~~~------~~~~DIi~~kGkfYAvD~--------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLV 253 (373)
T PLN03215 189 GNVLKALKQMG------YHFSDIIVHKGQTYALDS--------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFV 253 (373)
T ss_pred CCeeeEccCCC------ceeeEEEEECCEEEEEcC--------CCeEEEEecCC-ceeeecceecccccCCcccCceeEE
Confidence 47899886422 235678899999999943 23677777432 1122221 1111 1223345
Q ss_pred EECCEEEEEcCcCCCC-----------CCCCeE--EEEECCCCceEecCCCc
Q 018336 184 ELNGRVIIAGGHDENK-----------TALSSA--WAYDLIKDEWTELARMT 222 (358)
Q Consensus 184 ~~~~~iyv~GG~~~~~-----------~~~~~~--~~yd~~t~~W~~~~~~p 222 (358)
...|.++++....... .....+ +..|.+..+|.++..+.
T Consensus 254 Es~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 254 ECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 5678888887642110 012334 44487889999988764
No 132
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.23 E-value=50 Score=29.48 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=94.6
Q ss_pred eeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce--eeeeEEECCEEEEEcCcCCCCCCCCeEEE
Q 018336 130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS--FFAAGELNGRVIIAGGHDENKTALSSAWA 207 (358)
Q Consensus 130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 207 (358)
+.+..--+..||++..-+... .-..+.+|+..++-+.+..-+.+-. ++.++--++++.+..-+. ...+.+
T Consensus 44 yl~~~~~~~~LY~v~~~~~~g---gvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~-----~g~v~v 115 (346)
T COG2706 44 YLAVNPDQRHLYVVNEPGEEG---GVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH-----SGSVSV 115 (346)
T ss_pred eEEECCCCCEEEEEEecCCcC---cEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc-----CceEEE
Confidence 333333455788887643211 2356777777777777643332222 333333345443333222 246777
Q ss_pred EECCCC-c-eEec------CCCccCc-----CceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcc-c
Q 018336 208 YDLIKD-E-WTEL------ARMTQER-----DECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW-K 273 (358)
Q Consensus 208 yd~~t~-~-W~~~------~~~p~~~-----~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p-~ 273 (358)
|-...+ . |..+ ..-|.+| .+++...-++++.++--.. .+.+..|+.+.+.-+.....- .
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-------~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-------TDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-------CceEEEEEcccCccccccccccC
Confidence 776542 2 2221 1222233 3334445566554443221 567889999977665444311 1
Q ss_pred cCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee----cCCCCccCc
Q 018336 274 LSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF----DVPAEYKGL 349 (358)
Q Consensus 274 ~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~----~~p~~~~~~ 349 (358)
++..+|-- ..-..+.-.|++.-.++. -.+|.||....+.+++ .+|..+.+.
T Consensus 189 ~G~GPRHi-----------------------~FHpn~k~aY~v~EL~st--V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 189 PGAGPRHI-----------------------VFHPNGKYAYLVNELNST--VDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred CCCCcceE-----------------------EEcCCCcEEEEEeccCCE--EEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 11122211 112234557888776533 4677788888888888 788887776
Q ss_pred e
Q 018336 350 V 350 (358)
Q Consensus 350 ~ 350 (358)
.
T Consensus 244 ~ 244 (346)
T COG2706 244 N 244 (346)
T ss_pred C
Confidence 4
No 133
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.18 E-value=57 Score=30.14 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=80.4
Q ss_pred ceeEEEECCCC-----cEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc---eEe-cCCCccCc
Q 018336 155 SHVFVYDFTTR-----RWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE---WTE-LARMTQER 225 (358)
Q Consensus 155 ~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~-~~~~p~~~ 225 (358)
+++++.|.... .|+.+.+- ..-....+...++.+|+.-..+ .....+..+++.+.. |.. +.+-....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~---a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTNDD---APNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCCC---CCCcEEEEecccccccccceeEEcCCCCce
Confidence 68899998875 77776442 2222233344588999875422 234678889987665 663 33333222
Q ss_pred CceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcC-CccccCCCCCceeeeeecCccCceeccccceeece
Q 018336 226 DECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE-NAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGT 304 (358)
Q Consensus 226 ~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~-~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~ 304 (358)
.-..+...++.|++..-.. ....+.+||+. ..|.... .+|..+ +....
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~------~~~~l~v~~~~-~~~~~~~~~~p~~g----~v~~~-------------------- 376 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYREN------GSSRLRVYDLD-DGKESREIPLPEAG----SVSGV-------------------- 376 (414)
T ss_dssp EEEEEEEETTEEEEEEEET------TEEEEEEEETT--TEEEEEEESSSSS----EEEEE--------------------
T ss_pred eEEEEEEECCEEEEEEEEC------CccEEEEEECC-CCcEEeeecCCcce----EEecc--------------------
Confidence 3334456788887775332 15578899999 2333322 222111 00000
Q ss_pred EEEEeCCeEEE-ECCCCCCCCceEEEEECCCCceEee
Q 018336 305 CRVELGGCTLV-TGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 305 ~~~~~~~~i~v-~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
..-..++.+++ +.+.... ..+|.||+.+++.+.+
T Consensus 377 ~~~~~~~~~~~~~ss~~~P--~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 377 SGDFDSDELRFSYSSFTTP--PTVYRYDLATGELTLL 411 (414)
T ss_dssp ES-TT-SEEEEEEEETTEE--EEEEEEETTTTCEEEE
T ss_pred CCCCCCCEEEEEEeCCCCC--CEEEEEECCCCCEEEE
Confidence 00111334433 4555444 7999999999997765
No 134
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=77.82 E-value=51 Score=29.41 Aligned_cols=148 Identities=11% Similarity=0.152 Sum_probs=81.2
Q ss_pred cceeEEEECCCCcEEeCCC-----CCCCceeeeeEEEC-CEEEEEcCcCCCCCCCCeEEEEECCCCceEecC---CCccC
Q 018336 154 VSHVFVYDFTTRRWTRGKN-----MPDNRSFFAAGELN-GRVIIAGGHDENKTALSSAWAYDLIKDEWTELA---RMTQE 224 (358)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~-----~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~ 224 (358)
.+.+.+|+...+.-....+ --.|| |..-.-+ ...|++.-.+. .-.++.||...++.+++. .+|..
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPR--Hi~FHpn~k~aY~v~EL~s----tV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPR--HIVFHPNGKYAYLVNELNS----TVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcc--eEEEcCCCcEEEEEeccCC----EEEEEEEcCCCceEEEeeeeccCccc
Confidence 5688999888766554322 11222 3332223 45788743322 235677777778888765 34442
Q ss_pred ----cCceeEE-EECCE-EEEEeCcccCCCCceeeeeEEEE--CCCCceEEcCCccccCCCCCceeeeeecCccCceecc
Q 018336 225 ----RDECEAV-VIGSE-FWVVSGYKTERQGIFDESAESYQ--LGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAET 296 (358)
Q Consensus 225 ----~~~~~~~-~~~~~-lyv~gG~~~~~~~~~~~~i~~yd--~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~l 296 (358)
....++. .-+|+ ||+.-.. .++|.+|. +.+++=+-+...+..+..||.+..
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg--------~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i------------- 298 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRG--------HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI------------- 298 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCC--------CCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee-------------
Confidence 2222222 44676 5555321 34566664 455554444444444546776532
Q ss_pred ccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336 297 EAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 297 p~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
..++++++.-+..++. -.++.-|.++++-.++
T Consensus 299 -----------~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 299 -----------NPSGRFLIAANQKSDN-ITVFERDKETGRLTLL 330 (346)
T ss_pred -----------CCCCCEEEEEccCCCc-EEEEEEcCCCceEEec
Confidence 3567777776665442 4455558888888877
No 135
>PRK01742 tolB translocation protein TolB; Provisional
Probab=77.82 E-value=61 Score=30.26 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=34.1
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECC-EEEEEcCcCCCCCCCCeEEEEECCCCceEecCC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNG-RVIIAGGHDENKTALSSAWAYDLIKDEWTELAR 220 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (358)
..++++|..+.+-+.+...+.... ..+. -++ .|++....+. ...++.+|..++..+.+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~--~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG--APAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC--ceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeecc
Confidence 469999998877666654432211 1121 244 4544432221 2458888998887776653
No 136
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=77.15 E-value=44 Score=28.33 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=90.8
Q ss_pred eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEEC----CCCceEecCCCccCcCceeEE
Q 018336 156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDL----IKDEWTELARMTQERDECEAV 231 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~----~t~~W~~~~~~p~~~~~~~~~ 231 (358)
.+.......+.|.+-|... ++++|+..+.. ...+..|.. ..+.|.+.-.+|..-.+.+-+
T Consensus 11 ~~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~-----~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~V 74 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFD-----GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHV 74 (249)
T ss_pred EEEeeccccceeecCCCcc-----------cCceEEecccc-----CceEEEeccHHHhhccCcceEEeCCCCccccceE
Confidence 4555556667786654322 56788873322 234555554 345566666788888888899
Q ss_pred EECCEEEEEeCcccCCCCceeeeeEEEECCCCc---eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEE
Q 018336 232 VIGSEFWVVSGYKTERQGIFDESAESYQLGTGE---WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVE 308 (358)
Q Consensus 232 ~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~---W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~ 308 (358)
+.+|.+|.-.+. ...+.+||..++. |..++.+-...+.+- .|+. ....-+++
T Consensus 75 VynGs~yynk~~--------t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y------------~~~g-----~sdiD~av 129 (249)
T KOG3545|consen 75 VYNGSLYYNKAG--------TRNIIKYDLETRTVAGSAALPYAGYHNPSPY------------YWGG-----HSDIDLAV 129 (249)
T ss_pred EEcceEEeeccC--------CcceEEEEeecceeeeeeeccccccCCCccc------------ccCC-----Ccccccee
Confidence 999999988743 4567899999853 555554321111110 0100 01112466
Q ss_pred eCCeEEEECCCCCCCC-ceEEEEECCC----CceEeecCCCCccCceeeeeE
Q 018336 309 LGGCTLVTGSGYQGGP-QEFYVVEGRN----GKFRKFDVPAEYKGLVQSGCC 355 (358)
Q Consensus 309 ~~~~i~v~gG~~~~~~-~~i~~yd~~~----~~W~~~~~p~~~~~~~~~~~~ 355 (358)
-++-|+++--..++.. ..+-.+|+.+ .+|+.- ++...-+-+|-.|.
T Consensus 130 DE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~-~~k~~~~~aF~iCG 180 (249)
T KOG3545|consen 130 DENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTT-LPKRSAGNAFMICG 180 (249)
T ss_pred cccceeEEecccccCCcEEeeccCHHHhheeeeeccc-cCCCCcCceEEEee
Confidence 6777877755444433 3346788754 447554 55555555555553
No 137
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=76.54 E-value=59 Score=29.47 Aligned_cols=133 Identities=17% Similarity=-0.023 Sum_probs=68.6
Q ss_pred CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC-CEEEEEeCcc-cCCCCceeeeeEEEECCCCc
Q 018336 187 GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG-SEFWVVSGYK-TERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 187 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~-~~lyv~gG~~-~~~~~~~~~~i~~yd~~~~~ 264 (358)
..+||.-...... .+.+.++|..+.+- +..++.....+....-+ ..+|+...+. ....|+-.+.+.+||+.+.+
T Consensus 13 ~~v~V~d~~~~~~--~~~v~ViD~~~~~v--~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 13 RRVYVLDPGHFAA--TTQVYTIDGEAGRV--LGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CEEEEECCccccc--CceEEEEECCCCEE--EEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 3467764322111 26799999988543 33333332223334444 4588887632 22334446789999999986
Q ss_pred eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCe-EEEECCCCCCCCceEEEEECCCCceEe-ecC
Q 018336 265 WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGC-TLVTGSGYQGGPQEFYVVEGRNGKFRK-FDV 342 (358)
Q Consensus 265 W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~-i~v~gG~~~~~~~~i~~yd~~~~~W~~-~~~ 342 (358)
=..--.+|. .||..+.. .-......-+|+ |||.. .+.. +.+-++|.++++--. ++.
T Consensus 89 ~~~~i~~p~---~p~~~~~~----------------~~~~~~ls~dgk~l~V~n-~~p~--~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 89 PIADIELPE---GPRFLVGT----------------YPWMTSLTPDNKTLLFYQ-FSPS--PAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EEeEEccCC---CchhhccC----------------ccceEEECCCCCEEEEec-CCCC--CEEEEEECCCCcEEEEEeC
Confidence 542222221 22211110 001112334554 55554 2212 688999999887544 466
Q ss_pred CCC
Q 018336 343 PAE 345 (358)
Q Consensus 343 p~~ 345 (358)
|.+
T Consensus 147 p~~ 149 (352)
T TIGR02658 147 PDC 149 (352)
T ss_pred CCC
Confidence 654
No 138
>PRK02889 tolB translocation protein TolB; Provisional
Probab=76.07 E-value=68 Score=29.93 Aligned_cols=146 Identities=10% Similarity=-0.031 Sum_probs=73.0
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA 181 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 181 (358)
.++.+|..+++=..+...+... ......-+ ..|++....++ ..++|.+|..+...+.+..-........
T Consensus 221 ~I~~~dl~~g~~~~l~~~~g~~-----~~~~~SPDG~~la~~~~~~g-----~~~Iy~~d~~~~~~~~lt~~~~~~~~~~ 290 (427)
T PRK02889 221 VVYVHDLATGRRRVVANFKGSN-----SAPAWSPDGRTLAVALSRDG-----NSQIYTVNADGSGLRRLTQSSGIDTEPF 290 (427)
T ss_pred EEEEEECCCCCEEEeecCCCCc-----cceEECCCCCEEEEEEccCC-----CceEEEEECCCCCcEECCCCCCCCcCeE
Confidence 5777888777655554433211 11222223 35554433221 3579999998777666643221111122
Q ss_pred eEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeeeeEEEEC
Q 018336 182 AGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDESAESYQL 260 (358)
Q Consensus 182 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~ 260 (358)
...-+..|++...... ...++.++..++..+.+.... .........-+|+ |+...... + ...++.+|+
T Consensus 291 wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~----g--~~~I~v~d~ 359 (427)
T PRK02889 291 FSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVG----G--AFKLYVQDL 359 (427)
T ss_pred EcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccC----C--cEEEEEEEC
Confidence 1112334555432111 246888888887776664211 1111122233555 44333221 1 236888999
Q ss_pred CCCceEEcC
Q 018336 261 GTGEWKRAE 269 (358)
Q Consensus 261 ~~~~W~~~~ 269 (358)
.+++...+.
T Consensus 360 ~~g~~~~lt 368 (427)
T PRK02889 360 ATGQVTALT 368 (427)
T ss_pred CCCCeEEcc
Confidence 988777664
No 139
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=75.90 E-value=50 Score=28.27 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=55.0
Q ss_pred CceeEEEEECCEEEEEcCcCCCCCCCccee-EEEECC------CCcEEeCCC-CCCCceeeeeEEECCEEEEEcCcCCCC
Q 018336 128 PLFCQVASSQGKLVVMGGWDPASYSPVSHV-FVYDFT------TRRWTRGKN-MPDNRSFFAAGELNGRVIIAGGHDENK 199 (358)
Q Consensus 128 ~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~-~~yd~~------t~~W~~~~~-~~~~~~~~~~~~~~~~iyv~GG~~~~~ 199 (358)
..-|+.+.+++.=|.+|-.++... ..++ .+|-+. .-.-+.++. ....-...+.-.+++.+|+.---....
T Consensus 136 Te~HSFa~i~~~~fA~GyHnGD~s--PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~ 213 (367)
T PF12217_consen 136 TELHSFATIDDNQFAVGYHNGDVS--PRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPT 213 (367)
T ss_dssp SEEEEEEE-SSS-EEEEEEE-SSS--S-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TT
T ss_pred eeeeeeeEecCCceeEEeccCCCC--cceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCC
Confidence 345677788887788875443321 2222 222221 111122322 222234456667899999975322222
Q ss_pred CCCCeEEEEECCCCceEecC-CCccCcCceeEEEECCEEEEEeCcc
Q 018336 200 TALSSAWAYDLIKDEWTELA-RMTQERDECEAVVIGSEFWVVSGYK 244 (358)
Q Consensus 200 ~~~~~~~~yd~~t~~W~~~~-~~p~~~~~~~~~~~~~~lyv~gG~~ 244 (358)
..-+.+..-+.....|..+. +-.......-.+.+++.||++|...
T Consensus 214 ~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 214 NPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp S---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-S
T ss_pred CCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccc
Confidence 33456777777778898775 2122222333568899999999654
No 140
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.02 E-value=61 Score=28.82 Aligned_cols=93 Identities=9% Similarity=-0.046 Sum_probs=44.0
Q ss_pred eEEEEeCC-CCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCc
Q 018336 103 GVTVFDPV-SLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNR 177 (358)
Q Consensus 103 ~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~ 177 (358)
.+..|+.. .+++..+...+.... +. .++.. +..+|+.... .+.+.+||..++. ...+..++...
T Consensus 58 ~i~~~~~~~~g~l~~~~~~~~~~~--p~--~i~~~~~g~~l~v~~~~-------~~~v~v~~~~~~g~~~~~~~~~~~~~ 126 (330)
T PRK11028 58 RVLSYRIADDGALTFAAESPLPGS--PT--HISTDHQGRFLFSASYN-------ANCVSVSPLDKDGIPVAPIQIIEGLE 126 (330)
T ss_pred cEEEEEECCCCceEEeeeecCCCC--ce--EEEECCCCCEEEEEEcC-------CCeEEEEEECCCCCCCCceeeccCCC
Confidence 45556664 445654443332211 11 23322 4567776432 2467888876431 11222222222
Q ss_pred eeeeeEEE-C-CEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336 178 SFFAAGEL-N-GRVIIAGGHDENKTALSSAWAYDLIK 212 (358)
Q Consensus 178 ~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t 212 (358)
..|.++.. + ..+|+..- ..+.+.+||+.+
T Consensus 127 ~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~ 157 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCL------KEDRIRLFTLSD 157 (330)
T ss_pred cccEeEeCCCCCEEEEeeC------CCCEEEEEEECC
Confidence 23333332 3 45666532 135799999876
No 141
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.96 E-value=70 Score=29.55 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=81.0
Q ss_pred ceEEEEeCCCC-----CeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc---EE-eCCC
Q 018336 102 YGVTVFDPVSL-----TWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR---WT-RGKN 172 (358)
Q Consensus 102 ~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~---W~-~~~~ 172 (358)
..++..|.... .|..+.+... .....+...++.+|+....+. +...+..++..+.. |. .+.+
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~-----~~~~~v~~~~~~~yi~Tn~~a----~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRED-----GVEYYVDHHGDRLYILTNDDA----PNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSS-----S-EEEEEEETTEEEEEE-TT-----TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCC-----ceEEEEEccCCEEEEeeCCCC----CCcEEEEecccccccccceeEEcC
Confidence 57888888875 7777654222 123344455888998876332 24578888888765 66 3433
Q ss_pred CCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC-CCccCcCceeEEE---ECCE-EEEEeCcccCC
Q 018336 173 MPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA-RMTQERDECEAVV---IGSE-FWVVSGYKTER 247 (358)
Q Consensus 173 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~~~~~~~~~---~~~~-lyv~gG~~~~~ 247 (358)
-.....--.+...++.+++.--. +....+.+|++. ..|.... ++|..- ....+. -.+. .|.+.++.
T Consensus 323 ~~~~~~l~~~~~~~~~Lvl~~~~----~~~~~l~v~~~~-~~~~~~~~~~p~~g-~v~~~~~~~~~~~~~~~~ss~~--- 393 (414)
T PF02897_consen 323 EDEDVSLEDVSLFKDYLVLSYRE----NGSSRLRVYDLD-DGKESREIPLPEAG-SVSGVSGDFDSDELRFSYSSFT--- 393 (414)
T ss_dssp -SSSEEEEEEEEETTEEEEEEEE----TTEEEEEEEETT--TEEEEEEESSSSS-EEEEEES-TT-SEEEEEEEETT---
T ss_pred CCCceeEEEEEEECCEEEEEEEE----CCccEEEEEECC-CCcEEeeecCCcce-EEeccCCCCCCCEEEEEEeCCC---
Confidence 22223334444568888776422 235689999999 2233322 333221 111221 1233 34444443
Q ss_pred CCceeeeeEEEECCCCceEEcC
Q 018336 248 QGIFDESAESYQLGTGEWKRAE 269 (358)
Q Consensus 248 ~~~~~~~i~~yd~~~~~W~~~~ 269 (358)
....++.||+.+++.+.+.
T Consensus 394 ---~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 394 ---TPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ---EEEEEEEEETTTTCEEEEE
T ss_pred ---CCCEEEEEECCCCCEEEEE
Confidence 2568999999999876653
No 142
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=74.65 E-value=71 Score=29.46 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=62.6
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee-e
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF-F 180 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-~ 180 (358)
..+..||..+.. .++.+|... + +. .++....+.-|+.-+.++ ..+.+||....+ ..+.++.+-.. -
T Consensus 369 ~~vkiwdlks~~--~~a~Fpght-~-~v-k~i~FsENGY~Lat~add------~~V~lwDLRKl~--n~kt~~l~~~~~v 435 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVAKFPGHT-G-PV-KAISFSENGYWLATAADD------GSVKLWDLRKLK--NFKTIQLDEKKEV 435 (506)
T ss_pred ceEEEEEcCCcc--ccccCCCCC-C-ce-eEEEeccCceEEEEEecC------CeEEEEEehhhc--ccceeeccccccc
Confidence 357788888776 555665521 1 11 123333455555554432 248899986544 23333333222 1
Q ss_pred eeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE
Q 018336 181 AAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE 236 (358)
Q Consensus 181 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~ 236 (358)
....+ .|+..+++|.+ -.++.|+..+..|+.+..++..-.....+.+++.
T Consensus 436 ~s~~fD~SGt~L~~~g~~------l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSD------LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred eeEEEcCCCCeEEeecce------eEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 22223 35566665432 3477778889999999877654433345545443
No 143
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=74.58 E-value=49 Score=27.55 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=47.0
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEW 215 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (358)
++.++++|+. ...+.+||..+.+-........... ...... ++..+++++.+ ..+.+||..++.-
T Consensus 20 ~~~~l~~~~~-------~g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~------~~i~i~~~~~~~~ 85 (289)
T cd00200 20 DGKLLATGSG-------DGTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGSSD------KTIRLWDLETGEC 85 (289)
T ss_pred CCCEEEEeec-------CcEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEcCC------CeEEEEEcCcccc
Confidence 3455555553 2367888877654211111000011 112222 34455555432 4588999887532
Q ss_pred EecCCCccCcCcee-EEEE-CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 216 TELARMTQERDECE-AVVI-GSEFWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 216 ~~~~~~p~~~~~~~-~~~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
.. .+........ +... ++++++.++. ...+..||+.+.+
T Consensus 86 ~~--~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~ 126 (289)
T cd00200 86 VR--TLTGHTSYVSSVAFSPDGRILSSSSR--------DKTIKVWDVETGK 126 (289)
T ss_pred eE--EEeccCCcEEEEEEcCCCCEEEEecC--------CCeEEEEECCCcE
Confidence 21 1111111112 2222 3456666652 2356788887543
No 144
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=74.00 E-value=47 Score=27.08 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=54.2
Q ss_pred CEEEEEcCcCCCCCCCcceeEEEECCCCcEE---eCCCCCCCc--eeeeeEE-E--CCEEEEEcCcCCCCCCCCeEEEEE
Q 018336 138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWT---RGKNMPDNR--SFFAAGE-L--NGRVIIAGGHDENKTALSSAWAYD 209 (358)
Q Consensus 138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~---~~~~~~~~~--~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd 209 (358)
+.+|++-| +.+|+||..+.... .+...+.+. ..-.+|. . ++++|++.| +..+.||
T Consensus 63 ~~~yfFkg---------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~ 125 (194)
T cd00094 63 GKIYFFKG---------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYD 125 (194)
T ss_pred CEEEEECC---------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEe
Confidence 88999976 36889987652221 121111111 1112222 2 578999966 4577888
Q ss_pred CCCCceEe-----c----CCCccCcCceeEEEEC-CEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 210 LIKDEWTE-----L----ARMTQERDECEAVVIG-SEFWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 210 ~~t~~W~~-----~----~~~p~~~~~~~~~~~~-~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
..+++... + +.+|... .++...+ +++|++-|. ..++||..+++
T Consensus 126 ~~~~~v~~~yP~~i~~~w~g~p~~i--daa~~~~~~~~yfF~g~----------~y~~~d~~~~~ 178 (194)
T cd00094 126 EKTQKMDPGYPKLIETDFPGVPDKV--DAAFRWLDGYYYFFKGD----------QYWRFDPRSKE 178 (194)
T ss_pred CCCccccCCCCcchhhcCCCcCCCc--ceeEEeCCCcEEEEECC----------EEEEEeCccce
Confidence 76554321 1 1222221 2333344 889999764 45788888765
No 145
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=73.34 E-value=75 Score=29.11 Aligned_cols=225 Identities=11% Similarity=-0.008 Sum_probs=94.7
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA 181 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 181 (358)
..++..|..+++=.++...+... .....++.-+..+|.+-. ...++..|..|.+=+.+-..|......+
T Consensus 60 ~nly~lDL~t~~i~QLTdg~g~~---~~g~~~s~~~~~~~Yv~~--------~~~l~~vdL~T~e~~~vy~~p~~~~g~g 128 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGPGDN---TFGGFLSPDDRALYYVKN--------GRSLRRVDLDTLEERVVYEVPDDWKGYG 128 (386)
T ss_dssp -EEEEEETTT-EEEE---SS-B----TTT-EE-TTSSEEEEEET--------TTEEEEEETTT--EEEEEE--TTEEEEE
T ss_pred cceEEEEcccCEEEECccCCCCC---ccceEEecCCCeEEEEEC--------CCeEEEEECCcCcEEEEEECCccccccc
Confidence 47899999999999998866422 112233333556544422 2478999999988777766676665444
Q ss_pred eEEE--CCEEEEEcCcCC---C--------------CCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeC
Q 018336 182 AGEL--NGRVIIAGGHDE---N--------------KTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSG 242 (358)
Q Consensus 182 ~~~~--~~~iyv~GG~~~---~--------------~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG 242 (358)
..+. ++..+ +|-... . ....+.+..-|+.++..+.+-.-..-..+...-..+..+.+++-
T Consensus 129 t~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCH 207 (386)
T PF14583_consen 129 TWVANSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCH 207 (386)
T ss_dssp EEEE-TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE
T ss_pred ceeeCCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEec
Confidence 4333 23332 221100 0 12345677778888887765432222111111223344444432
Q ss_pred cccCCCCceeeeeEEEECCCCceEEcCC-ccccC-------------------CCCCceeeeeecCccCceeccccceee
Q 018336 243 YKTERQGIFDESAESYQLGTGEWKRAEN-AWKLS-------------------QCPRSNVGVGREGKLFCWAETEAAVQF 302 (358)
Q Consensus 243 ~~~~~~~~~~~~i~~yd~~~~~W~~~~~-~p~~~-------------------~~~~~~~~~~~d~~~~~W~~lp~~~r~ 302 (358)
...-. .+...||.-|........+.. .+... +.+.......||+++..=..+..++..
T Consensus 208 EGpw~--~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~ 285 (386)
T PF14583_consen 208 EGPWD--LVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWC 285 (386)
T ss_dssp -S-TT--TSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SE
T ss_pred cCCcc--eeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCce
Confidence 11111 112356666665433333322 11100 011111222456655432223333345
Q ss_pred ceEEEEeCCeEEEECCCCCCC------------CceEEEEECCCCceEee
Q 018336 303 GTCRVELGGCTLVTGSGYQGG------------PQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 303 ~~~~~~~~~~i~v~gG~~~~~------------~~~i~~yd~~~~~W~~~ 340 (358)
.+-....++++++--|..... ...++++++++.+-..+
T Consensus 286 ~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l 335 (386)
T PF14583_consen 286 SHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKL 335 (386)
T ss_dssp EEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEE
T ss_pred eeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeee
Confidence 676777889998875543211 03566778887775544
No 146
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=73.12 E-value=74 Score=28.96 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=75.9
Q ss_pred eEEEEeCCCCC--eeecCCC-CCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCC--cEEeCCCCCCCc
Q 018336 103 GVTVFDPVSLT--WDRLGPV-PEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR--RWTRGKNMPDNR 177 (358)
Q Consensus 103 ~~~~~d~~~~~--W~~~~~~-~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~ 177 (358)
.+.++|+.+.+ |+..... ... ........+++||+-.. ...+++||..+. .|+.-.+.. ++
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~-----~~~~~~~~~G~i~~g~~--------~g~~y~ld~~~G~~~W~~~~~~~-~~ 144 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQ-----LSGPILGSDGKIYVGSW--------DGKLYALDASTGTLVWSRNVGGS-PY 144 (370)
T ss_pred cEEEEeCCCCcEEecccCcCccee-----ccCceEEeCCeEEEecc--------cceEEEEECCCCcEEEEEecCCC-eE
Confidence 68999999998 8654432 010 01122233778777654 226999999644 576543321 22
Q ss_pred eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCC-ccCcCceeEEEECCEEEEEeCcccCCCCceeee
Q 018336 178 SFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARM-TQERDECEAVVIGSEFWVVSGYKTERQGIFDES 254 (358)
Q Consensus 178 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~-p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~ 254 (358)
..-..+..++.+|+.- ....++++|..++ .|+.-.+. ...+.....+..++.+|+-..- . ...
T Consensus 145 ~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~------~~~ 210 (370)
T COG1520 145 YASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-Y------DGI 210 (370)
T ss_pred EecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-C------cce
Confidence 2233334466666652 1246888888754 58743322 1222222233667777776422 1 115
Q ss_pred eEEEECCCC--ceEEc
Q 018336 255 AESYQLGTG--EWKRA 268 (358)
Q Consensus 255 i~~yd~~~~--~W~~~ 268 (358)
++.+|+.++ .|+.-
T Consensus 211 ~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 211 LYALNAEDGTLKWSQK 226 (370)
T ss_pred EEEEEccCCcEeeeee
Confidence 788999876 48753
No 147
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.42 E-value=50 Score=28.03 Aligned_cols=103 Identities=19% Similarity=0.320 Sum_probs=54.8
Q ss_pred EEEEEcCcCCCCCCCcceeEEEECCCCcEEeC----------------CCCCCCceeeeeEEECCEEEEEcCcCCCCCCC
Q 018336 139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRG----------------KNMPDNRSFFAAGELNGRVIIAGGHDENKTAL 202 (358)
Q Consensus 139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~----------------~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 202 (358)
+-++.||++. +-.+|.||. ++|..- |....++...+.+.-++++++.
T Consensus 176 krlvSgGcDn-----~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw---------- 238 (299)
T KOG1332|consen 176 KRLVSGGCDN-----LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW---------- 238 (299)
T ss_pred ceeeccCCcc-----ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE----------
Confidence 4578888753 334555554 366432 2333445544444445554443
Q ss_pred CeEEEEECCCCceEec--CCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECC-CCceEEcCCc
Q 018336 203 SSAWAYDLIKDEWTEL--ARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLG-TGEWKRAENA 271 (358)
Q Consensus 203 ~~~~~yd~~t~~W~~~--~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~-~~~W~~~~~~ 271 (358)
.-+.+.+.|+.- .++|.+....+--..++-|-|.||- +.+.+|-.. .++|.++...
T Consensus 239 ----t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd---------Nkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 239 ----TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD---------NKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred ----EecCccCcccccccccCCcceEEEEEeccccEEEEecCC---------cEEEEEEeCCCCcEEEcccc
Confidence 223456678753 3566655533333334444444543 356677776 4599988753
No 148
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=71.73 E-value=1.1e+02 Score=30.44 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=33.9
Q ss_pred EEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC--CEEEEEcCcCCCCCCCcceeEEEECCCCcEEe
Q 018336 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ--GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR 169 (358)
Q Consensus 104 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~ 169 (358)
+.++|....+-.+.-..|. +..+++++++ |.|.+.|+.+ .-++++++..|++--.
T Consensus 416 VRAwDlkRYrNfRTft~P~-----p~QfscvavD~sGelV~AG~~d------~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTSPE-----PIQFSCVAVDPSGELVCAGAQD------SFEIFVWSVQTGQLLD 472 (893)
T ss_pred EEeeeecccceeeeecCCC-----ceeeeEEEEcCCCCEEEeeccc------eEEEEEEEeecCeeee
Confidence 4555555444333323343 3344556665 8899999865 4478999999887544
No 149
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=70.86 E-value=11 Score=21.60 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=16.9
Q ss_pred EEEEeCCeEEEECCCCCCCCceEEEEECCC
Q 018336 305 CRVELGGCTLVTGSGYQGGPQEFYVVEGRN 334 (358)
Q Consensus 305 ~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~ 334 (358)
+.+..++.+|+.+.. ..++.+|+++
T Consensus 16 ~~~v~~g~vyv~~~d-----g~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGD-----GNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TT-----SEEEEEETT-
T ss_pred CCEEECCEEEEEcCC-----CEEEEEeCCC
Confidence 346678888888774 5899999874
No 150
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=69.82 E-value=94 Score=29.08 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=64.2
Q ss_pred cceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE
Q 018336 154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI 233 (358)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~ 233 (358)
..++|++|..+++-.++......-.......-+.+|+..-... ....++.||.+...=+.+..-..... +....-
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~----G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~Sp 335 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRG----GRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSP 335 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCC----CCcceEEECCCCCceeEeeccCCCCc-CccCCC
Confidence 4589999999887444443333223333333455666663222 23589999998876666553222222 344456
Q ss_pred CCEEEEEeCcccCCCCceeeeeEEEECCCCc-eEEcCCc
Q 018336 234 GSEFWVVSGYKTERQGIFDESAESYQLGTGE-WKRAENA 271 (358)
Q Consensus 234 ~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~-W~~~~~~ 271 (358)
+|+.+++-+.. .|. ..+..+|+.++. |+.+..-
T Consensus 336 dG~~i~~~~~~---~g~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 336 DGDKIVFESSS---GGQ--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred CCCEEEEEecc---CCc--eeeEEeccCCCCcEEEcccc
Confidence 77766666533 122 578889998876 8887753
No 151
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=69.53 E-value=97 Score=29.37 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=25.7
Q ss_pred eccccceeeceEEEEeCCeEEEECCCCCCCC--ceEEEEECCC
Q 018336 294 AETEAAVQFGTCRVELGGCTLVTGSGYQGGP--QEFYVVEGRN 334 (358)
Q Consensus 294 ~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~--~~i~~yd~~~ 334 (358)
..||.+....-+++.-+++|++.|-...++. ..++.||..+
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 4455554445556677889988887654433 4577777654
No 152
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=68.22 E-value=77 Score=27.19 Aligned_cols=162 Identities=9% Similarity=0.137 Sum_probs=74.6
Q ss_pred eeEEEEECCEEEEEcCcCCCCCCCcceeEEEE---CCCCcEEe--CCCCCC-------CceeeeeEEECCEEEEEcCcCC
Q 018336 130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYD---FTTRRWTR--GKNMPD-------NRSFFAAGELNGRVIIAGGHDE 197 (358)
Q Consensus 130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd---~~t~~W~~--~~~~~~-------~~~~~~~~~~~~~iyv~GG~~~ 197 (358)
.+++..++++||.+=-...-........+.|| ...+.|+. ++.++. .-.-|+.+.+++.-|.+|-.+.
T Consensus 77 CmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnG 156 (367)
T PF12217_consen 77 CMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNG 156 (367)
T ss_dssp -B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccC
Confidence 34567889999987543211112244455565 35677865 444444 2345778888888888886554
Q ss_pred CCCCCCeEEEEECCCCceEecC-----CCcc--CcCce--eEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336 198 NKTALSSAWAYDLIKDEWTELA-----RMTQ--ERDEC--EAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA 268 (358)
Q Consensus 198 ~~~~~~~~~~yd~~t~~W~~~~-----~~p~--~~~~~--~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~ 268 (358)
.-....--..|-+ +.|..-. .+|. .+... .+-..+|+||+......... .-..+..-+.....|+.+
T Consensus 157 D~sPRe~G~~yfs--~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~--~GS~L~rs~d~G~~w~sl 232 (367)
T PF12217_consen 157 DVSPRELGFLYFS--DAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTN--PGSSLHRSDDNGQNWSSL 232 (367)
T ss_dssp SSSS-EEEEEEET--TTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS-----EEEEESSTTSS-EEE
T ss_pred CCCcceeeEEEec--ccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCC--CcceeeeecccCCchhhc
Confidence 3222111122222 2222111 1122 22222 23378999999964332211 123455666666779887
Q ss_pred CCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCC
Q 018336 269 ENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGY 320 (358)
Q Consensus 269 ~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~ 320 (358)
.-. ....++... .+..++.||+||...
T Consensus 233 rfp---~nvHhtnlP----------------------FakvgD~l~mFgsER 259 (367)
T PF12217_consen 233 RFP---NNVHHTNLP----------------------FAKVGDVLYMFGSER 259 (367)
T ss_dssp E-T---T---SS-------------------------EEEETTEEEEEEE-S
T ss_pred ccc---ccccccCCC----------------------ceeeCCEEEEEeccc
Confidence 643 113333322 367899999997654
No 153
>PTZ00421 coronin; Provisional
Probab=66.74 E-value=1.2e+02 Score=28.97 Aligned_cols=62 Identities=8% Similarity=0.095 Sum_probs=34.5
Q ss_pred CEEEEEcCcCCCCCCCCeEEEEECCCCceE-ecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 187 GRVIIAGGHDENKTALSSAWAYDLIKDEWT-ELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 187 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
+.+++.||.+ ..+.+||..++.-. .+...... -..+. .-++.+++.|+.+ ..+..||+.+++
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~D--------g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEEcCCCCc--eEEEEEECCCCEEEEecCC--------CEEEEEECCCCc
Confidence 3566676654 35889999876432 12111111 11122 3367777777653 356789998764
No 154
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=66.64 E-value=82 Score=26.90 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=31.5
Q ss_pred CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCcee---EEEECCEEEEEeCcc
Q 018336 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECE---AVVIGSEFWVVSGYK 244 (358)
Q Consensus 186 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~---~~~~~~~lyv~gG~~ 244 (358)
+..+||+||-+. .++.||..|+.= +........+.. -..-+|.+|..|..+
T Consensus 235 ~k~~fVaGged~------~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 235 KKEFFVAGGEDF------KVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CCceEEecCcce------EEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCCC
Confidence 457999998654 388889888732 222222222211 124489999999765
No 155
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=64.61 E-value=5.7 Score=36.30 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=35.7
Q ss_pred CCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChh
Q 018336 26 LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRD 65 (358)
Q Consensus 26 ~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~ 65 (358)
..-+||+|++..+++.|..+++++.+.+|+-|+-+..+..
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 3447999999999999999999999999999998877665
No 156
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=64.43 E-value=85 Score=30.14 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC--EEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS--EFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 186 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~--~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
+-.||++|- ..+++.+|++.++|-. ++-..-....++.++. .|+++|+. ...++.||+-+.
T Consensus 145 scDly~~gs-------g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~--------~g~VEfwDpR~k 207 (703)
T KOG2321|consen 145 SCDLYLVGS-------GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTE--------DGVVEFWDPRDK 207 (703)
T ss_pred CccEEEeec-------CcceEEEEcccccccc--ccccccccceeeeecCccceEEeccc--------CceEEEecchhh
Confidence 456887752 2579999999999863 2222222233444443 37777765 346788998765
Q ss_pred c
Q 018336 264 E 264 (358)
Q Consensus 264 ~ 264 (358)
+
T Consensus 208 s 208 (703)
T KOG2321|consen 208 S 208 (703)
T ss_pred h
Confidence 3
No 157
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=64.01 E-value=90 Score=26.43 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=60.7
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce-eeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS-FFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEW 215 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (358)
+|+-++.-|. -..+-.+||....--+.-. ...+. .-++...++.-+..||-+ ..++++|..|++-
T Consensus 28 dGnY~ltcGs-------drtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgD------k~v~vwDV~TGkv 93 (307)
T KOG0316|consen 28 DGNYCLTCGS-------DRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGD------KAVQVWDVNTGKV 93 (307)
T ss_pred CCCEEEEcCC-------CceEEeecccccceeeeec-CCCceeeeccccccccccccCCCC------ceEEEEEcccCee
Confidence 4555555553 2467778887655322111 01111 112233456666666644 3589999998753
Q ss_pred EecCCCccCcCceeEEEECCE--EEEEeCcccCCCCceeeeeEEEECCCCceEEcCCc
Q 018336 216 TELARMTQERDECEAVVIGSE--FWVVSGYKTERQGIFDESAESYQLGTGEWKRAENA 271 (358)
Q Consensus 216 ~~~~~~p~~~~~~~~~~~~~~--lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~ 271 (358)
.+ .+........++.+|+. +.+.|++ -.++.+||-.++..+.+..+
T Consensus 94 ~R--r~rgH~aqVNtV~fNeesSVv~Sgsf--------D~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 94 DR--RFRGHLAQVNTVRFNEESSVVASGSF--------DSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred ee--ecccccceeeEEEecCcceEEEeccc--------cceeEEEEcccCCCCccchh
Confidence 21 12111222345566665 5555655 34678899998888776654
No 158
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=63.78 E-value=63 Score=30.95 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=56.2
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC--ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN--RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE 214 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (358)
...||+.|- ..++|++|...++|- .|+... -..+....--+.++++||.+ ..++.+|+.+..
T Consensus 145 scDly~~gs--------g~evYRlNLEqGrfL--~P~~~~~~~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ks 208 (703)
T KOG2321|consen 145 SCDLYLVGS--------GSEVYRLNLEQGRFL--NPFETDSGELNVVSINEEHGLLACGTED------GVVEFWDPRDKS 208 (703)
T ss_pred CccEEEeec--------CcceEEEEccccccc--cccccccccceeeeecCccceEEecccC------ceEEEecchhhh
Confidence 345777664 458999999999983 332222 22222222235688888754 358888887643
Q ss_pred e-Eec------CCCccCcC--ceeEEEECC-EEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 215 W-TEL------ARMTQERD--ECEAVVIGS-EFWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 215 W-~~~------~~~p~~~~--~~~~~~~~~-~lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
- ..+ ...|..-. ..+++.+.+ -|-+--|.. ...++.||+-+.+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-------~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-------TGSVLIYDLRASK 261 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeecc-------CCcEEEEEcccCC
Confidence 2 221 12222211 123334444 555544443 3456788876643
No 159
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=62.46 E-value=2.2e+02 Score=30.38 Aligned_cols=172 Identities=12% Similarity=0.017 Sum_probs=84.7
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC-------CCC-------c-eeeeeEEE--CCEEEEEcCcCCCC
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM-------PDN-------R-SFFAAGEL--NGRVIIAGGHDENK 199 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~-------~~~-------~-~~~~~~~~--~~~iyv~GG~~~~~ 199 (358)
++.|||.... ...+.++|+.++.-+.+..- ... . .-...+.. ++.+|+....
T Consensus 635 gn~LYVaDt~-------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~---- 703 (1057)
T PLN02919 635 KNLLYVADTE-------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG---- 703 (1057)
T ss_pred CCEEEEEeCC-------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC----
Confidence 5678987542 24688899888766554211 000 0 11223332 6789988432
Q ss_pred CCCCeEEEEECCCCceEecCCC----------c--cCcCce-eEEE-EC-CEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 200 TALSSAWAYDLIKDEWTELARM----------T--QERDEC-EAVV-IG-SEFWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 200 ~~~~~~~~yd~~t~~W~~~~~~----------p--~~~~~~-~~~~-~~-~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
.+.+++||+.++....+..- . ...... .+++ -+ +.|||.... .+.|.+||+.++.
T Consensus 704 --~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--------n~~Irv~D~~tg~ 773 (1057)
T PLN02919 704 --QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--------SSSIRALDLKTGG 773 (1057)
T ss_pred --CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--------CCeEEEEECCCCc
Confidence 24688899887765543210 0 000111 2222 23 348888643 3578899998765
Q ss_pred eEEcCC-ccccCCCCCceeeeeecCccCceeccccceee-ceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336 265 WKRAEN-AWKLSQCPRSNVGVGREGKLFCWAETEAAVQF-GTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 265 W~~~~~-~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~-~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
...+.. -+. .+..... +. ..+....- ..... ...++..+|.|||....+ +.|.+||+.++....+
T Consensus 774 ~~~~~gg~~~---~~~~l~~--fG-~~dG~g~~-~~l~~P~Gvavd~dG~LYVADs~N----~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 774 SRLLAGGDPT---FSDNLFK--FG-DHDGVGSE-VLLQHPLGVLCAKDGQIYVADSYN----HKIKKLDPATKRVTTL 840 (1057)
T ss_pred EEEEEecccc---cCccccc--cc-CCCCchhh-hhccCCceeeEeCCCcEEEEECCC----CEEEEEECCCCeEEEE
Confidence 332211 000 0000000 00 00000000 00001 122334567899987654 6899999998877655
No 160
>PRK13684 Ycf48-like protein; Provisional
Probab=61.35 E-value=1.2e+02 Score=27.16 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=62.1
Q ss_pred CCCCeeecCC-CCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC-CCCceeeeeEEE-C
Q 018336 110 VSLTWDRLGP-VPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM-PDNRSFFAAGEL-N 186 (358)
Q Consensus 110 ~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~~~~~~~-~ 186 (358)
.-.+|+.... ++... .....+...++..|+.|.. ..++.=+-.-.+|+.+... ..+...+....+ +
T Consensus 74 gG~tW~~~~~~~~~~~---~~l~~v~~~~~~~~~~G~~--------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~ 142 (334)
T PRK13684 74 GGETWEERSLDLPEEN---FRLISISFKGDEGWIVGQP--------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGP 142 (334)
T ss_pred CCCCceECccCCcccc---cceeeeEEcCCcEEEeCCC--------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECC
Confidence 4457987643 22111 1122333345556766531 2344433334589887532 122222223333 3
Q ss_pred CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEE-EECCCCce
Q 018336 187 GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAES-YQLGTGEW 265 (358)
Q Consensus 187 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~-yd~~~~~W 265 (358)
+.+|+.|.. ..++.=+-.-.+|+.+...... ....+....+..|+..|..+ .++. .|....+|
T Consensus 143 ~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~tW 206 (334)
T PRK13684 143 GTAEMATNV-------GAIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTAW 206 (334)
T ss_pred Ccceeeecc-------ceEEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCeE
Confidence 445665431 2344434456789987643322 22334444444455444321 1222 24445679
Q ss_pred EEcCC
Q 018336 266 KRAEN 270 (358)
Q Consensus 266 ~~~~~ 270 (358)
+.+..
T Consensus 207 ~~~~~ 211 (334)
T PRK13684 207 TPHQR 211 (334)
T ss_pred EEeeC
Confidence 88764
No 161
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=60.68 E-value=1.2e+02 Score=26.88 Aligned_cols=198 Identities=13% Similarity=0.061 Sum_probs=97.4
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcE-EeCCC----CCCC
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW-TRGKN----MPDN 176 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W-~~~~~----~~~~ 176 (358)
..++.|||.++.=+........ ........++.|..+.. .++.+++.+..- +.+.. .+.-
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~-----~~~~~~d~~g~Lv~~~~----------g~~~~~~~~~~~~t~~~~~~~~~~~~ 111 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGF-----SSGALIDAGGRLIACEH----------GVRLLDPDTGGKITLLAEPEDGLPLN 111 (307)
T ss_pred CeEEEecCCcCceEEEECCCCc-----ccceeecCCCeEEEEcc----------ccEEEeccCCceeEEeccccCCCCcC
Confidence 3577777776544433222221 01122333455655532 456666644333 44432 3344
Q ss_pred ceeeeeEEECCEEEEEcCc-----CCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC-EEEEEeCcccCCCCc
Q 018336 177 RSFFAAGELNGRVIIAGGH-----DENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS-EFWVVSGYKTERQGI 250 (358)
Q Consensus 177 ~~~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~-~lyv~gG~~~~~~~~ 250 (358)
|.+-+.+..+|.+|+---. .........++.||+. +...++..-.......-+..-++ .+|+.--.
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------- 183 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------- 183 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCC-------
Confidence 5555555566777764322 1111234579999984 44554432211111222234455 47776421
Q ss_pred eeeeeEEEECCC--------CceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC
Q 018336 251 FDESAESYQLGT--------GEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG 322 (358)
Q Consensus 251 ~~~~i~~yd~~~--------~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~ 322 (358)
...+++|+... +.+......+ + +-...++-.+|.||+..... +
T Consensus 184 -~~~i~r~~~d~~~g~~~~~~~~~~~~~~~--G-------------------------~PDG~~vDadG~lw~~a~~~-g 234 (307)
T COG3386 184 -ANRIHRYDLDPATGPIGGRRGFVDFDEEP--G-------------------------LPDGMAVDADGNLWVAAVWG-G 234 (307)
T ss_pred -CCeEEEEecCcccCccCCcceEEEccCCC--C-------------------------CCCceEEeCCCCEEEecccC-C
Confidence 34667776653 1111111100 0 11223566789999744331 1
Q ss_pred CCceEEEEECCCCceEeecCC-CCccCceeee
Q 018336 323 GPQEFYVVEGRNGKFRKFDVP-AEYKGLVQSG 353 (358)
Q Consensus 323 ~~~~i~~yd~~~~~W~~~~~p-~~~~~~~~~~ 353 (358)
..|.+|+++...-.++.+| ......+|.+
T Consensus 235 --~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 235 --GRVVRFNPDGKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred --ceEEEECCCCcEEEEEECCCCCCccceEeC
Confidence 4899999996656666888 4444444443
No 162
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=60.43 E-value=1.2e+02 Score=26.81 Aligned_cols=121 Identities=12% Similarity=0.170 Sum_probs=53.6
Q ss_pred EEEEeCCCCCeeecCCC-CCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeee
Q 018336 104 VTVFDPVSLTWDRLGPV-PEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA 182 (358)
Q Consensus 104 ~~~~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~ 182 (358)
++.-.-.-.+|.+++.. +.+. ..+...+.-++.+++++.. ..+++-.-.-.+|+.+..-...-..-..
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpg---s~~~i~~l~~~~~~l~~~~--------G~iy~T~DgG~tW~~~~~~~~gs~~~~~ 151 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPG---SPFGITALGDGSAELAGDR--------GAIYRTTDGGKTWQAVVSETSGSINDIT 151 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS----EEEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-S----EEEEE
T ss_pred EEEecCCCCCcEEeecCCCCCC---CeeEEEEcCCCcEEEEcCC--------CcEEEeCCCCCCeeEcccCCcceeEeEE
Confidence 34444456789988532 1111 1122233445677777642 3566666667799886543322221222
Q ss_pred EEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEe
Q 018336 183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVS 241 (358)
Q Consensus 183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~g 241 (358)
..-++.+++++... +-....|+....|+........|.......-++.|++++
T Consensus 152 r~~dG~~vavs~~G------~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 152 RSSDGRYVAVSSRG------NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp E-TTS-EEEEETTS------SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred ECCCCcEEEEECcc------cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe
Confidence 22356666565322 234567888888998775544444444445567788875
No 163
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=59.99 E-value=99 Score=25.60 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=46.2
Q ss_pred CEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeEEEC-CEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336 138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAGELN-GRVIIAGGHDENKTALSSAWAYDLIKDEW 215 (358)
Q Consensus 138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (358)
+.+++.++. ...+.+||..+.+-.. +.... ..-.+..... +.+++.|+.+ ..+.+||..+..-
T Consensus 105 ~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~ 169 (289)
T cd00200 105 GRILSSSSR-------DKTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKC 169 (289)
T ss_pred CCEEEEecC-------CCeEEEEECCCcEEEEEeccCC--CcEEEEEEcCcCCEEEEEcCC------CcEEEEEcccccc
Confidence 455555552 2468899987544322 22111 1111222222 4444444312 3588899875432
Q ss_pred -EecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 216 -TELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 216 -~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
..+.. ... .-..+. .-+++.+++++. ...+..||..+.+
T Consensus 170 ~~~~~~-~~~-~i~~~~~~~~~~~l~~~~~--------~~~i~i~d~~~~~ 210 (289)
T cd00200 170 VATLTG-HTG-EVNSVAFSPDGEKLLSSSS--------DGTIKLWDLSTGK 210 (289)
T ss_pred ceeEec-Ccc-ccceEEECCCcCEEEEecC--------CCcEEEEECCCCc
Confidence 11221 111 111222 224435555543 2256788887643
No 164
>PRK10115 protease 2; Provisional
Probab=59.67 E-value=2e+02 Score=28.96 Aligned_cols=123 Identities=10% Similarity=0.069 Sum_probs=67.2
Q ss_pred EEEECCEEEEEcCcCCCCCCCcceeEEEECC-CCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336 133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFT-TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLI 211 (358)
Q Consensus 133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 211 (358)
....++.+|+.-..+.. ...+...+.. +..|+.+-+......--.....++.+++..-.. ....+++++..
T Consensus 275 ~~~~~~~ly~~tn~~~~----~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~----g~~~l~~~~~~ 346 (686)
T PRK10115 275 LDHYQHRFYLRSNRHGK----NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQR----GLTSLRQINRK 346 (686)
T ss_pred EEeCCCEEEEEEcCCCC----CceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeC----CEEEEEEEcCC
Confidence 33446788887654322 3356777766 578988755422222223334577777764322 23568888887
Q ss_pred CCceEecCCCccCcCceeEEE----EC-CEEEE-EeCcccCCCCceeeeeEEEECCCCceEEcCCc
Q 018336 212 KDEWTELARMTQERDECEAVV----IG-SEFWV-VSGYKTERQGIFDESAESYQLGTGEWKRAENA 271 (358)
Q Consensus 212 t~~W~~~~~~p~~~~~~~~~~----~~-~~lyv-~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~ 271 (358)
++....++ ++.+... ..+. .+ +.+++ +.+.. ....++.||+.+++|+.+...
T Consensus 347 ~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~ss~~------~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 347 TREVIGIA-FDDPAYV-TWIAYNPEPETSRLRYGYSSMT------TPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred CCceEEec-CCCCceE-eeecccCCCCCceEEEEEecCC------CCCEEEEEECCCCcEEEEEec
Confidence 66666554 1112111 1111 12 33333 33332 245789999999998877653
No 165
>PRK10115 protease 2; Provisional
Probab=59.36 E-value=2e+02 Score=28.92 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=56.4
Q ss_pred cceeEEEEC--CCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECC-CCceEecCCCccCcCceeE
Q 018336 154 VSHVFVYDF--TTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLI-KDEWTELARMTQERDECEA 230 (358)
Q Consensus 154 ~~~~~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~~~~~~~ 230 (358)
.+.+++|+. .+..|..+.+.+.... +.....++.+|+.--.+ .....+...+.. ++.|+.+-+......-..+
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~~---~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~ 321 (686)
T PRK10115 246 TSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNRH---GKNFGLYRTRVRDEQQWEELIPPRENIMLEGF 321 (686)
T ss_pred cccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEEEcCC---CCCceEEEecCCCcccCeEEECCCCCCEEEEE
Confidence 357888873 2344433322222222 22334567888874322 223456667776 6789887655322222334
Q ss_pred EEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336 231 VVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE 269 (358)
Q Consensus 231 ~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~ 269 (358)
...++.|++..-..+ ...++++|..++....+.
T Consensus 322 ~~~~~~l~~~~~~~g------~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 322 TLFTDWLVVEERQRG------LTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEECCEEEEEEEeCC------EEEEEEEcCCCCceEEec
Confidence 456777777653321 346778887665555443
No 166
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=58.15 E-value=11 Score=33.33 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=32.8
Q ss_pred CCCCCCcHHHHHHHhccCC--------cchhhhHHhhcHhHHHhhcC
Q 018336 25 ELVPGLPEEISLECLTRLH--------YSTHRVATRVSRRWRQLIQS 63 (358)
Q Consensus 25 ~~~~~Lp~d~~~~il~rlp--------~~~~~~~~~v~k~w~~l~~s 63 (358)
..|..||.+++.+|+.|+. +++...+..||+.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 6789999999999999986 44678899999999986544
No 167
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=57.61 E-value=1.5e+02 Score=26.94 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=64.0
Q ss_pred EEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336 134 ASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLI 211 (358)
Q Consensus 134 ~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 211 (358)
+..++.+|+... ...++.+|+.+.+ |+................-+++||+-... ..+++||..
T Consensus 65 ~~~dg~v~~~~~--------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~-------g~~y~ld~~ 129 (370)
T COG1520 65 ADGDGTVYVGTR--------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD-------GKLYALDAS 129 (370)
T ss_pred EeeCCeEEEecC--------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc-------ceEEEEECC
Confidence 667889998722 1278999999887 86532210011111112226777765321 269999995
Q ss_pred --CCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCC--ceEEcC
Q 018336 212 --KDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTG--EWKRAE 269 (358)
Q Consensus 212 --t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~--~W~~~~ 269 (358)
+..|+.-.... .+.....+..++.+|+... ...++++|..++ .|+.-.
T Consensus 130 ~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~---------~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 130 TGTLVWSRNVGGS-PYYASPPVVGDGTVYVGTD---------DGHLYALNADTGTLKWTYET 181 (370)
T ss_pred CCcEEEEEecCCC-eEEecCcEEcCcEEEEecC---------CCeEEEEEccCCcEEEEEec
Confidence 44687644332 3333345566777777741 335678888866 487433
No 168
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=57.27 E-value=1.3e+02 Score=26.35 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=44.1
Q ss_pred CCEEEEEe-CcccCCCC---ceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEe
Q 018336 234 GSEFWVVS-GYKTERQG---IFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL 309 (358)
Q Consensus 234 ~~~lyv~g-G~~~~~~~---~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~ 309 (358)
.|+|+|+- |.....+. ....++..||+.+++=...-.+|.....+.+...- +++-
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lnd---------------------l~VD 69 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLND---------------------LVVD 69 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEE---------------------EEEE
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccce---------------------EEEE
Confidence 57799984 44322211 22458999999999854444454332122222211 1111
Q ss_pred C-------CeEEEECCCCCCCCceEEEEECCCCc-eEee
Q 018336 310 G-------GCTLVTGSGYQGGPQEFYVVEGRNGK-FRKF 340 (358)
Q Consensus 310 ~-------~~i~v~gG~~~~~~~~i~~yd~~~~~-W~~~ 340 (358)
. +.+||.--.. ..+.+||..+++ |+.+
T Consensus 70 ~~~~~~~~~~aYItD~~~----~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 70 VRDGNCDDGFAYITDSGG----PGLIVYDLATGKSWRVL 104 (287)
T ss_dssp CTTTTS-SEEEEEEETTT----CEEEEEETTTTEEEEEE
T ss_pred ccCCCCcceEEEEeCCCc----CcEEEEEccCCcEEEEe
Confidence 1 3567763322 589999999977 6666
No 169
>PLN00181 protein SPA1-RELATED; Provisional
Probab=56.29 E-value=2.4e+02 Score=28.88 Aligned_cols=89 Identities=11% Similarity=0.181 Sum_probs=44.2
Q ss_pred eeEEEECCCCcEEeCCCCCCC-ceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCce-EecCCCccCcCceeEE
Q 018336 156 HVFVYDFTTRRWTRGKNMPDN-RSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDEW-TELARMTQERDECEAV 231 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~-~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~~~~~~~~ 231 (358)
.+.+||..+++-.. .+... ..-.+++. .++.+++.|+.+. .+.+||..+..- ..+. .......+.
T Consensus 556 ~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~---~~~~v~~v~ 624 (793)
T PLN00181 556 VVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQGVSIGTIK---TKANICCVQ 624 (793)
T ss_pred eEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCCcEEEEEe---cCCCeEEEE
Confidence 67788887654321 11111 11122222 2456777776543 488899876532 2221 111111111
Q ss_pred E--ECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 232 V--IGSEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 232 ~--~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
. -++.++++|+.+ ..+..||..+.
T Consensus 625 ~~~~~g~~latgs~d--------g~I~iwD~~~~ 650 (793)
T PLN00181 625 FPSESGRSLAFGSAD--------HKVYYYDLRNP 650 (793)
T ss_pred EeCCCCCEEEEEeCC--------CeEEEEECCCC
Confidence 1 246677777542 35788888754
No 170
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=56.27 E-value=2.4e+02 Score=28.82 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=21.4
Q ss_pred EEECCEEEEEcCc-CCC---CCCCCeEEEEECCCCc--eEec
Q 018336 183 GELNGRVIIAGGH-DEN---KTALSSAWAYDLIKDE--WTEL 218 (358)
Q Consensus 183 ~~~~~~iyv~GG~-~~~---~~~~~~~~~yd~~t~~--W~~~ 218 (358)
++.++.+|+ |+. .++ ......+..||.+|++ |+.-
T Consensus 313 ~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 313 LVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 456777776 433 221 1224679999998874 7753
No 171
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.01 E-value=1.5e+02 Score=26.13 Aligned_cols=124 Identities=12% Similarity=0.105 Sum_probs=68.3
Q ss_pred ceEEEEeCCCCC----eeecCCCCCCCCCCCceeEEE-----EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCC
Q 018336 102 YGVTVFDPVSLT----WDRLGPVPEYPAGLPLFCQVA-----SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKN 172 (358)
Q Consensus 102 ~~~~~~d~~~~~----W~~~~~~~~~~~~~~~~~~~~-----~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~ 172 (358)
..+..||...++ |++--.-+..- +.-+. ..++.|++.-+ ++.. .--+|..|..++.-+.+..
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~W-----aGEVSdIlYdP~~D~LLlAR~-DGh~---nLGvy~ldr~~g~~~~L~~ 148 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKW-----AGEVSDILYDPYEDRLLLARA-DGHA---NLGVYSLDRRTGKAEKLSS 148 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCcccc-----ccchhheeeCCCcCEEEEEec-CCcc---eeeeEEEcccCCceeeccC
Confidence 468889988876 55443333211 11111 12566666643 2211 2257888888988888876
Q ss_pred CCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCce--EecCCC------cc-CcCceeEEEECCEEEEE
Q 018336 173 MPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEW--TELARM------TQ-ERDECEAVVIGSEFWVV 240 (358)
Q Consensus 173 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W--~~~~~~------p~-~~~~~~~~~~~~~lyv~ 240 (358)
-|... ++...+...|-+ .........+++||+.+++| +..+.- +. .+..-.++...+++|.+
T Consensus 149 ~ps~K---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 149 NPSLK---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred CCCcC---ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 66553 222223333322 22223467899999999999 443311 11 12223456778887777
No 172
>PF13013 F-box-like_2: F-box-like domain
Probab=53.87 E-value=20 Score=26.26 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=24.4
Q ss_pred CCCCcHHHHHHHhccCCcchhhhHHhhcH
Q 018336 27 VPGLPEEISLECLTRLHYSTHRVATRVSR 55 (358)
Q Consensus 27 ~~~Lp~d~~~~il~rlp~~~~~~~~~v~k 55 (358)
+..||.||++.|+..-....+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 77899999999999888888777666666
No 173
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=53.27 E-value=2.1e+02 Score=27.29 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=35.8
Q ss_pred CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE--ECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV--IGSEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 186 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~--~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
++...++||.+. .+++|.+..+.-.+....-..|.....+. -++.+++.|-. ...+..||..++
T Consensus 454 ~~~~vaVGG~Dg------kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da--------~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 454 DGSEVAVGGQDG------KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA--------SRKVVLYDVASR 519 (603)
T ss_pred CCCEEEEecccc------eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc--------CCcEEEEEcccC
Confidence 566677777543 38888887655443332333333333332 24555555432 345677888776
Q ss_pred ce
Q 018336 264 EW 265 (358)
Q Consensus 264 ~W 265 (358)
.=
T Consensus 520 ~~ 521 (603)
T KOG0318|consen 520 EV 521 (603)
T ss_pred ce
Confidence 43
No 174
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=52.88 E-value=2e+02 Score=26.83 Aligned_cols=43 Identities=9% Similarity=0.205 Sum_probs=28.9
Q ss_pred CCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEe
Q 018336 199 KTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVS 241 (358)
Q Consensus 199 ~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~g 241 (358)
+...+.++++|..-+.--++..+-..-.-+++-..++.+|++.
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVT 444 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVT 444 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEE
Confidence 4456889999988777777766544333345557777777775
No 175
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=51.65 E-value=2e+02 Score=26.64 Aligned_cols=29 Identities=3% Similarity=-0.018 Sum_probs=19.4
Q ss_pred EEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336 307 VELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF 340 (358)
Q Consensus 307 ~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~ 340 (358)
..-++.+++.|.. ..+++-...-++|++.
T Consensus 335 ~~~d~~~~a~G~~-----G~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 335 YRSKKEAWAAGGS-----GILLRSTDGGKSWKRD 363 (398)
T ss_pred EcCCCcEEEEECC-----CcEEEeCCCCcceeEc
Confidence 3346788888875 2455556667779886
No 176
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=51.52 E-value=1.7e+02 Score=25.75 Aligned_cols=89 Identities=10% Similarity=0.128 Sum_probs=45.7
Q ss_pred eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE-EC
Q 018336 156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV-IG 234 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~-~~ 234 (358)
++-+||..++.-+..-....| -...+..+..-.+.||.+. .+..||+.++.=..+..-..+.. .+.. ..
T Consensus 36 slrlYdv~~~~l~~~~~~~~p--lL~c~F~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~~~i~--ci~~~~~ 105 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHGAP--LLDCAFADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHDEGIR--CIEYSYE 105 (323)
T ss_pred cEEEEeccchhhhhheecCCc--eeeeeccCCceEEEeccCc------eEEEEEecCCcceeeccCCCceE--EEEeecc
Confidence 678888877732211111111 1223334555566777654 59999998876555543322211 1111 12
Q ss_pred CEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336 235 SEFWVVSGYKTERQGIFDESAESYQLGT 262 (358)
Q Consensus 235 ~~lyv~gG~~~~~~~~~~~~i~~yd~~~ 262 (358)
....+.||.+ ..|..+|+-+
T Consensus 106 ~~~vIsgsWD--------~~ik~wD~R~ 125 (323)
T KOG1036|consen 106 VGCVISGSWD--------KTIKFWDPRN 125 (323)
T ss_pred CCeEEEcccC--------ccEEEEeccc
Confidence 2345555543 3567788776
No 177
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=50.95 E-value=2.5e+02 Score=27.57 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=67.4
Q ss_pred ECCEEEEEcCcCCCCCCCCeEEEEECCC---CceEecCCCccCcCceeEE--EE-CCEEEEEeCcccCCCCceeeeeEEE
Q 018336 185 LNGRVIIAGGHDENKTALSSAWAYDLIK---DEWTELARMTQERDECEAV--VI-GSEFWVVSGYKTERQGIFDESAESY 258 (358)
Q Consensus 185 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~~~~p~~~~~~~~~--~~-~~~lyv~gG~~~~~~~~~~~~i~~y 258 (358)
-++.+.++|-. ..+.+|.++- -+=+.+..+|..+...... .. ++++++.. . ...+++.+
T Consensus 392 Pdg~~Ia~st~-------~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-~-------~~~~le~~ 456 (691)
T KOG2048|consen 392 PDGNLIAISTV-------SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-K-------NIFSLEEF 456 (691)
T ss_pred CCCCEEEEeec-------cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-c-------ccceeEEE
Confidence 35666666432 3444454433 2344556777766443332 33 45555554 1 14467888
Q ss_pred ECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceE
Q 018336 259 QLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFR 338 (358)
Q Consensus 259 d~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~ 338 (358)
+.++.+..++...-....++--+ ....-..|+.|.++++. ..|++|+.++.+-+
T Consensus 457 el~~ps~kel~~~~~~~~~~~I~---------------------~l~~SsdG~yiaa~~t~-----g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 457 ELETPSFKELKSIQSQAKCPSIS---------------------RLVVSSDGNYIAAISTR-----GQIFVYNLETLESH 510 (691)
T ss_pred EecCcchhhhhccccccCCCcce---------------------eEEEcCCCCEEEEEecc-----ceEEEEEcccceee
Confidence 88888888777652211111111 11234567889999877 58999999999877
Q ss_pred ee
Q 018336 339 KF 340 (358)
Q Consensus 339 ~~ 340 (358)
.+
T Consensus 511 ~l 512 (691)
T KOG2048|consen 511 LL 512 (691)
T ss_pred cc
Confidence 66
No 178
>PTZ00420 coronin; Provisional
Probab=50.83 E-value=2.5e+02 Score=27.48 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=32.3
Q ss_pred EEEEEcCcCCCCCCCCeEEEEECCCCceE-ecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 188 RVIIAGGHDENKTALSSAWAYDLIKDEWT-ELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 188 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
.+++.||.+ ..+.+||+.++.=. .+. .+. ....+. ..+|.+++.++.+ ..+..||+.+++
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~~~~~i~-~~~--~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEKRAFQIN-MPK--KLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCcEEEEEe-cCC--cEEEEEECCCCCEEEEEecC--------CEEEEEECCCCc
Confidence 455566554 35888999876411 111 111 111222 3467777766532 357889998764
No 179
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=50.79 E-value=1.3e+02 Score=28.45 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=48.7
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
+.++.|+...+.....-.+..+...++--..+...-++.|+.. ..+..||...+-=-.++.-+ .......-.
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p-----a~~s~~~lr~Nl~~~~Pe~~---rNT~~fsp~ 326 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP-----ASVSVFDLRGNLRFYFPEQK---RNTIFFSPH 326 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccc-----cceeecccccceEEecCCcc---cccccccCc
Confidence 5677777765554433345556666665556666666666543 24556666666222222221 111222334
Q ss_pred CEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 235 SEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 235 ~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
++..++.|+... ..+++.||+..+
T Consensus 327 ~r~il~agF~nl-----~gni~i~~~~~r 350 (561)
T COG5354 327 ERYILFAGFDNL-----QGNIEIFDPAGR 350 (561)
T ss_pred ccEEEEecCCcc-----ccceEEeccCCc
Confidence 555566665433 334555555443
No 180
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=48.48 E-value=1.8e+02 Score=25.00 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=61.3
Q ss_pred CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE--EECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 186 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
+++..+++|. ..+..||+.++.=..+..+-.......++ -++|+-...||.++ .+.++|+.+-
T Consensus 51 dk~~LAaa~~-------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg--------t~kIWdlR~~ 115 (311)
T KOG0315|consen 51 DKKDLAAAGN-------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG--------TVKIWDLRSL 115 (311)
T ss_pred CcchhhhccC-------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc--------eEEEEeccCc
Confidence 4455555553 34889999886422222121222333333 56888777777643 3566777763
Q ss_pred ceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEeecCC
Q 018336 264 EWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVP 343 (358)
Q Consensus 264 ~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~~~p 343 (358)
.-++.-..+ .+. ..++..-++--+|.|..+ ..|+++|...+......+|
T Consensus 116 ~~qR~~~~~----spV------------------------n~vvlhpnQteLis~dqs---g~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 116 SCQRNYQHN----SPV------------------------NTVVLHPNQTELISGDQS---GNIRVWDLGENSCTHELIP 164 (311)
T ss_pred ccchhccCC----CCc------------------------ceEEecCCcceEEeecCC---CcEEEEEccCCccccccCC
Confidence 332222221 111 123444455555555433 3799999999987766556
Q ss_pred CC
Q 018336 344 AE 345 (358)
Q Consensus 344 ~~ 345 (358)
+.
T Consensus 165 e~ 166 (311)
T KOG0315|consen 165 ED 166 (311)
T ss_pred CC
Confidence 54
No 181
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.73 E-value=2.1e+02 Score=25.38 Aligned_cols=125 Identities=19% Similarity=0.298 Sum_probs=71.2
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--CC-EEEEEcCcCCCCCCCCeE
Q 018336 131 CQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NG-RVIIAGGHDENKTALSSA 205 (358)
Q Consensus 131 ~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~ 205 (358)
|.++.. ...+.+++.. +-..+.+||+.+.+-...-..+..|..++-+++ ++ .+|..=. +.......+
T Consensus 8 H~~a~~p~~~~avafaRR------PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn--d~~~g~G~I 79 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARR------PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN--DYETGRGVI 79 (305)
T ss_pred cceeeCCCCCeEEEEEeC------CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecc--ccCCCcEEE
Confidence 344443 4667777763 445799999999886544344666766555544 44 5665522 222234678
Q ss_pred EEEECCCCceEecCCCcc-CcCceeEEEE-CCEEEEE--eCcccCCC-C-------ceeeeeEEEECCCCc
Q 018336 206 WAYDLIKDEWTELARMTQ-ERDECEAVVI-GSEFWVV--SGYKTERQ-G-------IFDESAESYQLGTGE 264 (358)
Q Consensus 206 ~~yd~~t~~W~~~~~~p~-~~~~~~~~~~-~~~lyv~--gG~~~~~~-~-------~~~~~i~~yd~~~~~ 264 (358)
-+||.. +..+++..++. ...-|.+... ||+-.|+ ||.....+ | ....++...|..+++
T Consensus 80 gVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 80 GVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred EEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence 999998 67888876665 3334455443 4433333 56543311 1 112356667777765
No 182
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=46.67 E-value=45 Score=17.64 Aligned_cols=26 Identities=15% Similarity=0.434 Sum_probs=17.1
Q ss_pred EeCCeEEEECCCCCCCCceEEEEECCCCc--eE
Q 018336 308 ELGGCTLVTGSGYQGGPQEFYVVEGRNGK--FR 338 (358)
Q Consensus 308 ~~~~~i~v~gG~~~~~~~~i~~yd~~~~~--W~ 338 (358)
..++.+|+.... ..++.+|.++++ |+
T Consensus 4 ~~~~~v~~~~~~-----g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 4 LSDGTVYVGSTD-----GTLYALDAKTGEILWT 31 (33)
T ss_pred EECCEEEEEcCC-----CEEEEEEcccCcEEEE
Confidence 345666665433 588999987765 65
No 183
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=45.91 E-value=2.4e+02 Score=25.81 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=50.7
Q ss_pred cceeEEEECCCCcE-EeCCCCCCCceeeeeEEE---CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCcee
Q 018336 154 VSHVFVYDFTTRRW-TRGKNMPDNRSFFAAGEL---NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECE 229 (358)
Q Consensus 154 ~~~~~~yd~~t~~W-~~~~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~ 229 (358)
.+.+.+.|..+++- .+++... ..|..... +..+|+.+. + ..+.++|+.+.+ .+...+......+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~--~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANR-D------GTVSVIDLATGK--VVATIKVGGNPRG 82 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEET-T------SEEEEEETTSSS--EEEEEE-SSEEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcC-C------CeEEEEECCccc--EEEEEecCCCcce
Confidence 45899999988763 3343322 22444332 457888842 1 369999999886 3344444433333
Q ss_pred EE-EECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 230 AV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 230 ~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
++ .-+|+..+++.+. .+.+.++|.++.+
T Consensus 83 i~~s~DG~~~~v~n~~-------~~~v~v~D~~tle 111 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE-------PGTVSVIDAETLE 111 (369)
T ss_dssp EEE--TTTEEEEEEEE-------TTEEEEEETTT--
T ss_pred EEEcCCCCEEEEEecC-------CCceeEecccccc
Confidence 33 5577766555443 4467889988754
No 184
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=45.87 E-value=2.8e+02 Score=27.66 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=45.1
Q ss_pred eeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccC--cCceeEEE
Q 018336 156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQE--RDECEAVV 232 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~--~~~~~~~~ 232 (358)
.+-++|..+..-.++-.- ....-.+++. .+|+..+.|+.+ ..+.+||+.+++-- ..+-.. -...-...
T Consensus 558 tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed------~~I~iWDl~~~~~v--~~l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDED------GLIKIWDLANGSLV--KQLKGHTGTIYSLSFS 628 (707)
T ss_pred eEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccC------CcEEEEEcCCCcch--hhhhcccCceeEEEEe
Confidence 566667666655444321 1111112222 245444444433 35899999885321 112111 11111236
Q ss_pred ECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336 233 IGSEFWVVSGYKTERQGIFDESAESYQLGT 262 (358)
Q Consensus 233 ~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~ 262 (358)
.+|.+++.||.+ +++..||...
T Consensus 629 ~dg~vLasgg~D--------nsV~lWD~~~ 650 (707)
T KOG0263|consen 629 RDGNVLASGGAD--------NSVRLWDLTK 650 (707)
T ss_pred cCCCEEEecCCC--------CeEEEEEchh
Confidence 799999999874 3556666653
No 185
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=45.70 E-value=1.5e+02 Score=28.04 Aligned_cols=45 Identities=11% Similarity=0.013 Sum_probs=28.5
Q ss_pred EEEeCCeEEEECCCCCCCCceEEEEECCCCceEee-cCCCCccCceeeee
Q 018336 306 RVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF-DVPAEYKGLVQSGC 354 (358)
Q Consensus 306 ~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~-~~p~~~~~~~~~~~ 354 (358)
++..+..|++--|++ ..|+.||...++-... ..-.+++...|.-|
T Consensus 216 fspsne~l~vsVG~D----kki~~yD~~s~~s~~~l~y~~Plstvaf~~~ 261 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYD----KKINIYDIRSQASTDRLTYSHPLSTVAFSEC 261 (673)
T ss_pred ecCCccceEEEeccc----ceEEEeecccccccceeeecCCcceeeecCC
Confidence 456778888888887 7899999887664433 33334444443333
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=45.24 E-value=2e+02 Score=24.63 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=49.3
Q ss_pred CeeecCCCCCCCCCCCceeEEE--EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEE
Q 018336 113 TWDRLGPVPEYPAGLPLFCQVA--SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVI 190 (358)
Q Consensus 113 ~W~~~~~~~~~~~~~~~~~~~~--~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iy 190 (358)
.|+..+|+.......+.-.++. ...+.|+..|| -..++..|.++++.++.-. ...-+-|+.+..+..--
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG--------D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG--------DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecC--------CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcc
Confidence 4666666554222222222333 23678888887 2368999999998765421 11123344444332222
Q ss_pred EEcCcCCCCCCCCeEEEEECCCCceEec
Q 018336 191 IAGGHDENKTALSSAWAYDLIKDEWTEL 218 (358)
Q Consensus 191 v~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (358)
++.|..+ ..+.++|.+|.+-..+
T Consensus 171 ilsG~ED-----GtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 171 ILSGAED-----GTVRVWDTKTQKHVSM 193 (325)
T ss_pred eeecCCC-----ccEEEEeccccceeEE
Confidence 2222222 3588889988765543
No 187
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=44.95 E-value=2.7e+02 Score=26.24 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=52.9
Q ss_pred ceeEEEECCCC-c-EEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE
Q 018336 155 SHVFVYDFTTR-R-WTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV 231 (358)
Q Consensus 155 ~~~~~yd~~t~-~-W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 231 (358)
..+.+||...+ + -+.+...+... ++.+. ..+.+++.|+.+. .+.++|..+.+-...-..-.........
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCC------cEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 36888888443 2 23344444334 22222 2457888887654 4999999885443221111111111222
Q ss_pred EECCEEEEEeCcccCCCCceeeeeEEEECCCCceE
Q 018336 232 VIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK 266 (358)
Q Consensus 232 ~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~ 266 (358)
.-++.+++.+.. -..+.+||..++.-.
T Consensus 297 ~~d~~~l~s~s~--------d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 297 SPDGNLLVSASY--------DGTIRVWDLETGSKL 323 (456)
T ss_pred CCCCCEEEEcCC--------CccEEEEECCCCcee
Confidence 446667777744 235788999988754
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=43.58 E-value=2.8e+02 Score=25.88 Aligned_cols=138 Identities=10% Similarity=0.077 Sum_probs=65.5
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECC-EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQG-KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA 181 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 181 (358)
.++.+|..+++-..+...+... ......-++ .|++....++ ..++|.+|..++..+.+..-........
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g~~-----~~~~wSPDG~~La~~~~~~g-----~~~Iy~~d~~~~~~~~lt~~~~~~~~~~ 298 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRGHN-----GAPAFSPDGSRLAFASSKDG-----VLNIYVMGANGGTPSQLTSGAGNNTEPS 298 (429)
T ss_pred EEEEEeCCCCceEEEecCCCcc-----CceeECCCCCEEEEEEecCC-----cEEEEEEECCCCCeEeeccCCCCcCCEE
Confidence 4666777666555554433211 111222244 4444332221 2368999998887776644222111111
Q ss_pred eEEECC-EEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeeeeEEEE
Q 018336 182 AGELNG-RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDESAESYQ 259 (358)
Q Consensus 182 ~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~i~~yd 259 (358)
. .-++ .|++...... ...++.++..++.-+.+.. ... .....-+|+ |++.++ ..+..+|
T Consensus 299 w-SpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~----------~~i~~~D 359 (429)
T PRK01742 299 W-SPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING----------DNVVKQD 359 (429)
T ss_pred E-CCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC----------CCEEEEE
Confidence 1 1234 4555532222 2357777766553333321 111 112233555 444432 2356789
Q ss_pred CCCCceEEcC
Q 018336 260 LGTGEWKRAE 269 (358)
Q Consensus 260 ~~~~~W~~~~ 269 (358)
..++++..+.
T Consensus 360 l~~g~~~~lt 369 (429)
T PRK01742 360 LTSGSTEVLS 369 (429)
T ss_pred CCCCCeEEec
Confidence 9998887654
No 189
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=43.07 E-value=2.9e+02 Score=26.04 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=39.0
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT 216 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (358)
.+.+++.|+.+ ..+.++|..+.+-...-..-..........-++.+++.+.++ ..+.+||..++.-.
T Consensus 257 ~g~~i~Sgs~D-------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 257 DGNLLVSGSDD-------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGSKL 323 (456)
T ss_pred CCCEEEEecCC-------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCcee
Confidence 45788888754 478999998854433211111111111122356777776543 35999999988743
No 190
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=43.02 E-value=3e+02 Score=26.19 Aligned_cols=96 Identities=13% Similarity=0.229 Sum_probs=55.1
Q ss_pred EEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC-ceeeeeE-EECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336 134 ASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN-RSFFAAG-ELNGRVIIAGGHDENKTALSSAWAYDLI 211 (358)
Q Consensus 134 ~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 211 (358)
..-++.-.++||. ...+-++|..+-+=+....++.. ..+++++ ..+.++.+..-.+ ..+.+||+.
T Consensus 473 L~pdgrtLivGGe-------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd------GnI~vwDLh 539 (705)
T KOG0639|consen 473 LLPDGRTLIVGGE-------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD------GNIAVWDLH 539 (705)
T ss_pred ecCCCceEEeccc-------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC------CcEEEEEcc
Confidence 3447888899995 45788899887665555555542 2233333 3456655554332 248888887
Q ss_pred CCceEecCCCccCcCceeEE--EECCEEEEEeCcc
Q 018336 212 KDEWTELARMTQERDECEAV--VIGSEFWVVSGYK 244 (358)
Q Consensus 212 t~~W~~~~~~p~~~~~~~~~--~~~~~lyv~gG~~ 244 (358)
.++- +..++....+.... .-+|.=...||.+
T Consensus 540 nq~~--VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 540 NQTL--VRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred ccee--eecccCCCCCceeEEecCCCceeecCCCc
Confidence 7643 23444444444443 3346666677764
No 191
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=42.99 E-value=2.3e+02 Score=24.87 Aligned_cols=126 Identities=16% Similarity=0.257 Sum_probs=62.0
Q ss_pred eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe---C-CCCCCCce
Q 018336 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR---G-KNMPDNRS 178 (358)
Q Consensus 103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~---~-~~~~~~~~ 178 (358)
.+.++|..+..=...-++|.. ....++.+-.+.....||.+ +.+-+|+..++.=.- + ..++....
T Consensus 78 klIvWDs~TtnK~haipl~s~----WVMtCA~sPSg~~VAcGGLd-------N~Csiy~ls~~d~~g~~~v~r~l~gHtg 146 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSS----WVMTCAYSPSGNFVACGGLD-------NKCSIYPLSTRDAEGNVRVSRELAGHTG 146 (343)
T ss_pred eEEEEEcccccceeEEecCce----eEEEEEECCCCCeEEecCcC-------ceeEEEecccccccccceeeeeecCccc
Confidence 456677666554444455542 11222333467788888864 467888887653221 1 12333333
Q ss_pred eeeeEE-EC-CEEEEEcCcCCCCCCCCeEEEEECCCCceEe-cCCCccCcCceeEEEECCEEEEEeCcccC
Q 018336 179 FFAAGE-LN-GRVIIAGGHDENKTALSSAWAYDLIKDEWTE-LARMTQERDECEAVVIGSEFWVVSGYKTE 246 (358)
Q Consensus 179 ~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~~~~~~~~~~~~~lyv~gG~~~~ 246 (358)
+.+.+. ++ +.|..-.| -...-.+|++++.=.. +..-........+...+++.|+.||.+..
T Consensus 147 ylScC~f~dD~~ilT~SG-------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 147 YLSCCRFLDDNHILTGSG-------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred eeEEEEEcCCCceEecCC-------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc
Confidence 333332 34 44443322 1346677888764332 11111111111111237889999988644
No 192
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=42.76 E-value=29 Score=29.73 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=29.8
Q ss_pred CCCCCCCcHHHHHHHhccCC-cchhhhHHhhcHhHHHhhcChh
Q 018336 24 GELVPGLPEEISLECLTRLH-YSTHRVATRVSRRWRQLIQSRD 65 (358)
Q Consensus 24 ~~~~~~Lp~d~~~~il~rlp-~~~~~~~~~v~k~w~~l~~s~~ 65 (358)
...+..||.+++.+|+.||| ..++..+..|--....|+....
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 55678999999999999997 5566666665555444444433
No 193
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.48 E-value=2e+02 Score=24.00 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=63.9
Q ss_pred EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCc-eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEEC
Q 018336 132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR-SFFAAGELNGRVIIAGGHDENKTALSSAWAYDL 210 (358)
Q Consensus 132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 210 (358)
++...+++++..-|.-+ .+.+.++|..+.+-..-.+++.++ ..-+.+.+++.+|.+== . -...+.||.
T Consensus 50 GL~~~~g~i~esTG~yg-----~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw-~-----egvaf~~d~ 118 (262)
T COG3823 50 GLEYLDGHILESTGLYG-----FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW-K-----EGVAFKYDA 118 (262)
T ss_pred ceeeeCCEEEEeccccc-----cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe-c-----cceeEEECh
Confidence 45666888888877544 457999999977643333333233 33455668899998721 1 134677776
Q ss_pred CCCceEecCCCccCcCceeEEEECCEEEEEeCcc
Q 018336 211 IKDEWTELARMTQERDECEAVVIGSEFWVVSGYK 244 (358)
Q Consensus 211 ~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~ 244 (358)
.+ .+.+...+..-.+-+.+.-+..|.+..|..
T Consensus 119 ~t--~~~lg~~~y~GeGWgLt~d~~~LimsdGsa 150 (262)
T COG3823 119 DT--LEELGRFSYEGEGWGLTSDDKNLIMSDGSA 150 (262)
T ss_pred HH--hhhhcccccCCcceeeecCCcceEeeCCce
Confidence 55 566666776666667777777777776643
No 194
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=41.21 E-value=2e+02 Score=23.48 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=46.4
Q ss_pred cceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCE-EEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336 101 SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGK-LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF 179 (358)
Q Consensus 101 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~ 179 (358)
.-.++.+|..++.|..+..-+......| ....-.-+.. ++++|.. .+...--..+++|++.|+.-..+-+.......
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~sP-K~i~WiDD~~L~vIIG~a-~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkqQ 164 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYSP-KYIEWIDDNNLAVIIGYA-HGTVSKGGNLYKYNLNTGNLTELYEWKDKKQQ 164 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccCC-ceeEEecCCcEEEEEccc-cceEccCCeEEEEEccCCceeEeeecccccee
Confidence 4579999999999976632222111101 1122233444 4555532 22212235899999999998888776554444
Q ss_pred eeeEEE
Q 018336 180 FAAGEL 185 (358)
Q Consensus 180 ~~~~~~ 185 (358)
...+..
T Consensus 165 Vis~e~ 170 (200)
T PF15525_consen 165 VISAEK 170 (200)
T ss_pred EEEEEE
Confidence 444433
No 195
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=40.57 E-value=2e+02 Score=23.42 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=44.2
Q ss_pred CCCCCcceeEEEECCCCcEEeCCCCCCC-ceeeeeEE-E-CCEEEEEcCcCC-CCCCCCeEEEEECCCCceEecCCCccC
Q 018336 149 ASYSPVSHVFVYDFTTRRWTRGKNMPDN-RSFFAAGE-L-NGRVIIAGGHDE-NKTALSSAWAYDLIKDEWTELARMTQE 224 (358)
Q Consensus 149 ~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~~~~~~-~-~~~iyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~ 224 (358)
..++....+|++|..++.|..+.--+.. ...+--+. + +..|.++-|... .-..-..+++|++.++.=..+-+....
T Consensus 82 a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dk 161 (200)
T PF15525_consen 82 AEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDK 161 (200)
T ss_pred cccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecccc
Confidence 3345678999999999888765221111 11111111 2 344444444322 111235799999999988888776554
Q ss_pred cC
Q 018336 225 RD 226 (358)
Q Consensus 225 ~~ 226 (358)
.-
T Consensus 162 kq 163 (200)
T PF15525_consen 162 KQ 163 (200)
T ss_pred ce
Confidence 33
No 196
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=39.50 E-value=3.9e+02 Score=26.40 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=34.4
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCc
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRR 166 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~ 166 (358)
..++.||+.. .|...+-++.+.. +.--+++-. +++||-.|.. ..+..||+.+..
T Consensus 47 g~IEiwN~~~-~w~~~~vi~g~~d--rsIE~L~W~e~~RLFS~g~s--------g~i~EwDl~~lk 101 (691)
T KOG2048|consen 47 GNIEIWNLSN-NWFLEPVIHGPED--RSIESLAWAEGGRLFSSGLS--------GSITEWDLHTLK 101 (691)
T ss_pred CcEEEEccCC-CceeeEEEecCCC--CceeeEEEccCCeEEeecCC--------ceEEEEecccCc
Confidence 4688899986 7877666555433 222244444 7889998873 356667766544
No 197
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=37.19 E-value=3.6e+02 Score=25.31 Aligned_cols=62 Identities=11% Similarity=0.002 Sum_probs=32.8
Q ss_pred CCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336 202 LSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN 270 (358)
Q Consensus 202 ~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~ 270 (358)
..+++++|..+..=.++...... .......-+|+ |+......+ ...|+.+|++..+=+++..
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi-~~~Ps~spdG~~ivf~Sdr~G------~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGI-NTSPSWSPDGSKIVFTSDRGG------RPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CccEEEEcCCCCcceecccCCcc-ccCccCCCCCCEEEEEeCCCC------CcceEEECCCCCceeEeec
Confidence 46899999987763333322221 11222334555 444422221 2378889988776555543
No 198
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.08 E-value=3e+02 Score=26.59 Aligned_cols=93 Identities=13% Similarity=0.201 Sum_probs=50.8
Q ss_pred CcceeEEEECCCCcEEeCC--C--CCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCce
Q 018336 153 PVSHVFVYDFTTRRWTRGK--N--MPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDEC 228 (358)
Q Consensus 153 ~~~~~~~yd~~t~~W~~~~--~--~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~ 228 (358)
+.-+..+|+...++-+++. . ++.+....+- ..++..+++|-.+ .++..||..++.=+.. ......
T Consensus 234 ~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~-sp~E~kLvlGC~D------gSiiLyD~~~~~t~~~----ka~~~P 302 (545)
T PF11768_consen 234 PSADSCIYECSRNKLQRVSVTSIPLPSQVICCAR-SPSEDKLVLGCED------GSIILYDTTRGVTLLA----KAEFIP 302 (545)
T ss_pred ceeEEEEEEeecCceeEEEEEEEecCCcceEEec-CcccceEEEEecC------CeEEEEEcCCCeeeee----eecccc
Confidence 4456677888777666543 2 2222211111 1245566666544 3599999876632211 111112
Q ss_pred eEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336 229 EAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGE 264 (358)
Q Consensus 229 ~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~ 264 (358)
..+.. +|.++++|+. ...+++||..-+.
T Consensus 303 ~~iaWHp~gai~~V~s~--------qGelQ~FD~ALsp 332 (545)
T PF11768_consen 303 TLIAWHPDGAIFVVGSE--------QGELQCFDMALSP 332 (545)
T ss_pred eEEEEcCCCcEEEEEcC--------CceEEEEEeecCc
Confidence 23333 7788888875 3457888887653
No 199
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.96 E-value=2.8e+02 Score=24.05 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=43.2
Q ss_pred eEEEECC-EEEEEeCcccCCCCceeeeeEEEECCCC--ceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceE
Q 018336 229 EAVVIGS-EFWVVSGYKTERQGIFDESAESYQLGTG--EWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTC 305 (358)
Q Consensus 229 ~~~~~~~-~lyv~gG~~~~~~~~~~~~i~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~ 305 (358)
-++++++ +-||+-|.. ...+.+-|+.++ .|+.+-.- |.-+.
T Consensus 15 pLVV~~dskT~v~igSH-------s~~~~avd~~sG~~~We~ilg~-----------------------------RiE~s 58 (354)
T KOG4649|consen 15 PLVVCNDSKTLVVIGSH-------SGIVIAVDPQSGNLIWEAILGV-----------------------------RIECS 58 (354)
T ss_pred cEEEecCCceEEEEecC-------CceEEEecCCCCcEEeehhhCc-----------------------------eeeee
Confidence 3555553 445554432 345677888876 48876543 44455
Q ss_pred EEEeCCeEEEECCCCCCCCceEEEEECCCCc--eEee
Q 018336 306 RVELGGCTLVTGSGYQGGPQEFYVVEGRNGK--FRKF 340 (358)
Q Consensus 306 ~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~--W~~~ 340 (358)
+++.|+. .|+|-++ ..+|.++..++. |+-.
T Consensus 59 a~vvgdf-VV~GCy~----g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 59 AIVVGDF-VVLGCYS----GGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred eEEECCE-EEEEEcc----CcEEEEEecchhheeeee
Confidence 6667777 5677765 467777777663 7655
No 200
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=36.85 E-value=26 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.2
Q ss_pred CCCCCCcHHHHHHHhccCCcchhhh
Q 018336 25 ELVPGLPEEISLECLTRLHYSTHRV 49 (358)
Q Consensus 25 ~~~~~Lp~d~~~~il~rlp~~~~~~ 49 (358)
..|..||.|+-..||..|+-+++..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5799999999999999999888654
No 201
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=36.37 E-value=3e+02 Score=24.28 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=51.0
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA 181 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 181 (358)
..+..||..++.=..+..--.+. -+..-......++.||++ ..+.++|+....- ......+..-++
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i-----~ci~~~~~~~~vIsgsWD-------~~ik~wD~R~~~~--~~~~d~~kkVy~ 140 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGI-----RCIEYSYEVGCVISGSWD-------KTIKFWDPRNKVV--VGTFDQGKKVYC 140 (323)
T ss_pred ceEEEEEecCCcceeeccCCCce-----EEEEeeccCCeEEEcccC-------ccEEEEecccccc--ccccccCceEEE
Confidence 46888999988766554433311 111112345677888885 3688889876221 112222234445
Q ss_pred eEEECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336 182 AGELNGRVIIAGGHDENKTALSSAWAYDLIKD 213 (358)
Q Consensus 182 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 213 (358)
+.+.++.| ++|+.+ ..+..||+.+.
T Consensus 141 ~~v~g~~L-vVg~~~------r~v~iyDLRn~ 165 (323)
T KOG1036|consen 141 MDVSGNRL-VVGTSD------RKVLIYDLRNL 165 (323)
T ss_pred EeccCCEE-EEeecC------ceEEEEEcccc
Confidence 55555555 444433 45899999764
No 202
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=34.74 E-value=2.5e+02 Score=22.81 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=47.6
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT 216 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (358)
+..+.++-|.. ...+.+||.....-. .++........=.-+|+..++||.... ...++.||..+ .+
T Consensus 71 g~~favi~g~~------~~~v~lyd~~~~~i~---~~~~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~~wd~~~--~~ 136 (194)
T PF08662_consen 71 GNEFAVIYGSM------PAKVTLYDVKGKKIF---SFGTQPRNTISWSPDGRFLVLAGFGNL---NGDLEFWDVRK--KK 136 (194)
T ss_pred CCEEEEEEccC------CcccEEEcCcccEeE---eecCCCceEEEECCCCCEEEEEEccCC---CcEEEEEECCC--CE
Confidence 55666665522 237899998633322 222221121111236777888776532 25799999984 44
Q ss_pred ecCCCccCcCceeEEEECCEEEEEeCc
Q 018336 217 ELARMTQERDECEAVVIGSEFWVVSGY 243 (358)
Q Consensus 217 ~~~~~p~~~~~~~~~~~~~~lyv~gG~ 243 (358)
.+............-.-+|+.++....
T Consensus 137 ~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 137 KISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 444333222111111446776666543
No 203
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=32.44 E-value=1.8e+02 Score=28.52 Aligned_cols=57 Identities=11% Similarity=0.129 Sum_probs=34.6
Q ss_pred CeEEEEECCCCceEec-CCCccCcCcee-EEEECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 203 SSAWAYDLIKDEWTEL-ARMTQERDECE-AVVIGSEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 203 ~~~~~yd~~t~~W~~~-~~~p~~~~~~~-~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
..+.+|++.+..=... ..-|....+.. .-+++|++.++-|++... ...+..||..+-
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S----eRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS----ERQVQMYDAQTL 800 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc----hhhhhhhhhhhc
Confidence 3578888876431111 12233223333 348999999999998765 345667776654
No 204
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=31.77 E-value=3.7e+02 Score=23.90 Aligned_cols=84 Identities=17% Similarity=0.286 Sum_probs=44.7
Q ss_pred cceeEEEECCCCcEEeCCCCCCCc-eee-eeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceE-ecCCCccCcCce
Q 018336 154 VSHVFVYDFTTRRWTRGKNMPDNR-SFF-AAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWT-ELARMTQERDEC 228 (358)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~~-~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~~~~~ 228 (358)
...+-+||..|-+.-.-.. |... ... +.+.+ .+.+|+.|..++ .+..+|-.+++.. .+...-..-.-+
T Consensus 237 Hp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG------~IklwDGVS~rCv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG------AIKLWDGVSNRCVRTIGNAHGGSEVC 309 (430)
T ss_pred CCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCC------cEEeeccccHHHHHHHHhhcCCceee
Confidence 3468889998765432222 3222 111 11223 578999986654 4788887776543 222222222223
Q ss_pred eEE-EECCEEEEEeCcc
Q 018336 229 EAV-VIGSEFWVVSGYK 244 (358)
Q Consensus 229 ~~~-~~~~~lyv~gG~~ 244 (358)
+++ .-|++..+..|.+
T Consensus 310 Sa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKD 326 (430)
T ss_pred eEEEccCCeEEeecCCc
Confidence 333 4577766666764
No 205
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=30.98 E-value=4.9e+02 Score=25.01 Aligned_cols=104 Identities=19% Similarity=0.311 Sum_probs=51.5
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDE 214 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (358)
++..+++||.+ ..+.+|......-.+..-+...|...+.+.+ ++..+++|- ....+..||.+++.
T Consensus 454 ~~~~vaVGG~D-------gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D------a~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 454 DGSEVAVGGQD-------GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD------ASRKVVLYDVASRE 520 (603)
T ss_pred CCCEEEEeccc-------ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec------cCCcEEEEEcccCc
Confidence 44455555543 2477887766543332222222333333333 344444432 23458888887654
Q ss_pred eEecCC--CccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336 215 WTELAR--MTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT 262 (358)
Q Consensus 215 W~~~~~--~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~ 262 (358)
=. ... +-.+|..+.+-.-++++...|+.+ ..+.+|+++.
T Consensus 521 ~~-~~~w~FHtakI~~~aWsP~n~~vATGSlD--------t~Viiysv~k 561 (603)
T KOG0318|consen 521 VK-TNRWAFHTAKINCVAWSPNNKLVATGSLD--------TNVIIYSVKK 561 (603)
T ss_pred ee-cceeeeeeeeEEEEEeCCCceEEEecccc--------ceEEEEEccC
Confidence 31 111 222333322334577788887663 3567787764
No 206
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=3.3e+02 Score=22.85 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=37.6
Q ss_pred eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCccCcCceeEEEECCEEEEEe
Q 018336 181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQERDECEAVVIGSEFWVVS 241 (358)
Q Consensus 181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~~~~~~~~~~~~~lyv~g 241 (358)
+....++.||.--|.-. .+.+.++|..+++ |.+--+ |...++-+.+.+++.+|.+.
T Consensus 50 GL~~~~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LT 107 (262)
T COG3823 50 GLEYLDGHILESTGLYG----FSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLT 107 (262)
T ss_pred ceeeeCCEEEEeccccc----cceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEE
Confidence 45567888887766443 3679999998654 543222 23445567789999999985
No 207
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=30.31 E-value=3.5e+02 Score=23.14 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=89.5
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECC----CCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFT----TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK 212 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~----t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 212 (358)
++++|++.+.. ...+..|... ...+...-.+|.+..+.+.++++|.+|.-.+ ....+..||+.+
T Consensus 30 ~~r~~~~~~~~------~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~------~t~~ivky~l~~ 97 (249)
T KOG3545|consen 30 DDRIYVMNYFD------GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKA------GTRNIIKYDLET 97 (249)
T ss_pred cCceEEecccc------CceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeecc------CCcceEEEEeec
Confidence 55677775543 3356666553 3345555567888888888899999998753 245688999987
Q ss_pred C---ceEecCCCcc------CcCc---eeEEEECCEEEEEeCcccCCCCceeeeeEEEECC----CCceEEcCCccccCC
Q 018336 213 D---EWTELARMTQ------ERDE---CEAVVIGSEFWVVSGYKTERQGIFDESAESYQLG----TGEWKRAENAWKLSQ 276 (358)
Q Consensus 213 ~---~W~~~~~~p~------~~~~---~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~----~~~W~~~~~~p~~~~ 276 (358)
. .|..++.+.. .-.+ .-.++-.+-|+++=-..... + ...+-..|+. ..+|..--...
T Consensus 98 ~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~-g--~iv~skLdp~tl~~e~tW~T~~~k~---- 170 (249)
T KOG3545|consen 98 RTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENA-G--TIVLSKLDPETLEVERTWNTTLPKR---- 170 (249)
T ss_pred ceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccC-C--cEEeeccCHHHhheeeeeccccCCC----
Confidence 4 3565653311 1111 12334344466663222111 1 1223556663 24563322211
Q ss_pred CCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEeecCC
Q 018336 277 CPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVP 343 (358)
Q Consensus 277 ~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~~~p 343 (358)
....++.+=|.+|++-........--+.||..+++=+.+.+|
T Consensus 171 -------------------------~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 171 -------------------------SAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred -------------------------CcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 112234444888888776555433337899998887666444
No 208
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.47 E-value=4e+02 Score=23.18 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=32.6
Q ss_pred CcceEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCC--cEEe
Q 018336 100 LSYGVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR--RWTR 169 (358)
Q Consensus 100 ~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~--~W~~ 169 (358)
+...+.+.|+.+++ |+.+-. . |....+.++++. .|+|-+. ..+|..+..|+ -|..
T Consensus 31 Hs~~~~avd~~sG~~~We~ilg--~-----RiE~sa~vvgdf-VV~GCy~-------g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 31 HSGIVIAVDPQSGNLIWEAILG--V-----RIECSAIVVGDF-VVLGCYS-------GGLYFLCVKTGSQIWNF 89 (354)
T ss_pred CCceEEEecCCCCcEEeehhhC--c-----eeeeeeEEECCE-EEEEEcc-------CcEEEEEecchhheeee
Confidence 34578899999997 665432 2 233345556766 4555432 24666666665 3644
No 209
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=28.06 E-value=3.9e+02 Score=23.00 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=47.6
Q ss_pred ceEEEEeCCCCCeeecCCCCCCCCCCCceeEE-EEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336 102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQV-ASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF 180 (358)
Q Consensus 102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 180 (358)
..+..||..+++=..+...-..... -.++ -..+++-...||.++ .+-++|...-.-.+.-..+.+...-
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kN---VtaVgF~~dgrWMyTgseDg-------t~kIWdlR~~~~qR~~~~~spVn~v 130 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKN---VTAVGFQCDGRWMYTGSEDG-------TVKIWDLRSLSCQRNYQHNSPVNTV 130 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCc---eEEEEEeecCeEEEecCCCc-------eEEEEeccCcccchhccCCCCcceE
Confidence 3688899988764333222221111 0011 123566666666442 5677777664433332222222111
Q ss_pred eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEe
Q 018336 181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE 217 (358)
Q Consensus 181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (358)
..-.-...+++ | .....+.++|+.++....
T Consensus 131 vlhpnQteLis-~------dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 131 VLHPNQTELIS-G------DQSGNIRVWDLGENSCTH 160 (311)
T ss_pred EecCCcceEEe-e------cCCCcEEEEEccCCcccc
Confidence 11111233333 2 223569999999886654
No 210
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=27.45 E-value=2.9e+02 Score=24.91 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=53.7
Q ss_pred ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336 155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234 (358)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~ 234 (358)
..+-+++..|... +..+...+.+-+.+-+.+++.|-|..+ +.+..+|.+.+.--++-.=... -...+.+|
T Consensus 340 RTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSSD------ntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 340 RTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSD------NTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred ceEEEEeccceee--ehhhhcccccceehhccCeEEEecCCC------ceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 3567777766544 233344444555556789988887543 4688999988765433211111 11245788
Q ss_pred CEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 235 SEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 235 ~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
++-.|.||+++ .+-++|+.+.
T Consensus 410 ~krIVSGaYDG--------kikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDG--------KIKVWDLQAA 430 (499)
T ss_pred Cceeeeccccc--------eEEEEecccc
Confidence 99889998753 3455665543
No 211
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=26.84 E-value=4.3e+02 Score=23.11 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=52.0
Q ss_pred CCEEEEEc-CcCCCCC----CCcceeEEEECCCCcEEe---CCC-CCCCceeeeeEEEC--------CEEEEEcCcCCCC
Q 018336 137 QGKLVVMG-GWDPASY----SPVSHVFVYDFTTRRWTR---GKN-MPDNRSFFAAGELN--------GRVIIAGGHDENK 199 (358)
Q Consensus 137 ~~~lyv~G-g~~~~~~----~~~~~~~~yd~~t~~W~~---~~~-~~~~~~~~~~~~~~--------~~iyv~GG~~~~~ 199 (358)
.+.|+|+- |.-.... .+...+..||..|++-.+ +++ .-.+.....-.+++ +.+|+.--
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~----- 85 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS----- 85 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET-----
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC-----
Confidence 57888883 3311111 234689999999998543 222 22233333333322 36777632
Q ss_pred CCCCeEEEEECCCC-ceEecCCCccCcCceeEEEECCEEEE
Q 018336 200 TALSSAWAYDLIKD-EWTELARMTQERDECEAVVIGSEFWV 239 (358)
Q Consensus 200 ~~~~~~~~yd~~t~-~W~~~~~~p~~~~~~~~~~~~~~lyv 239 (358)
....+.+||..++ .|+.+.....+........++|..+-
T Consensus 86 -~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~ 125 (287)
T PF03022_consen 86 -GGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQ 125 (287)
T ss_dssp -TTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEE
T ss_pred -CcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEe
Confidence 1348999999986 57766654333333345566666543
No 212
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=25.27 E-value=5.9e+02 Score=24.56 Aligned_cols=38 Identities=5% Similarity=0.112 Sum_probs=26.3
Q ss_pred CccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 221 MTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 221 ~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
+|..........-.|+|.+++|+... ..++++||..+.
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGNL-----~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGNL-----PGDMEVWDVPNR 346 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCCC-----CCceEEEeccch
Confidence 34433444444557889999998654 568999999874
No 213
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=25.04 E-value=2.2e+02 Score=26.77 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=44.3
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeE------EECCEEEEEcCcCCCCCCCCeEEEEEC
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAG------ELNGRVIIAGGHDENKTALSSAWAYDL 210 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~------~~~~~iyv~GG~~~~~~~~~~~~~yd~ 210 (358)
.++|++.||.+. .+++||..... +.+.... .|..+ .-++.-++.+|++. .+..+|.
T Consensus 226 ~~hLlLS~gmD~-------~vklW~vy~~~-~~lrtf~----gH~k~Vrd~~~s~~g~~fLS~sfD~------~lKlwDt 287 (503)
T KOG0282|consen 226 KGHLLLSGGMDG-------LVKLWNVYDDR-RCLRTFK----GHRKPVRDASFNNCGTSFLSASFDR------FLKLWDT 287 (503)
T ss_pred eeeEEEecCCCc-------eEEEEEEecCc-ceehhhh----cchhhhhhhhccccCCeeeeeecce------eeeeecc
Confidence 567888888653 56677665421 1111111 11111 12355566666553 3777888
Q ss_pred CCCceEecCCCccCcCceeEEEEC-CEEEEEeCccc
Q 018336 211 IKDEWTELARMTQERDECEAVVIG-SEFWVVSGYKT 245 (358)
Q Consensus 211 ~t~~W~~~~~~p~~~~~~~~~~~~-~~lyv~gG~~~ 245 (358)
+|++-...-....... +.-.--+ .+++++||.++
T Consensus 288 ETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDK 322 (503)
T ss_pred ccceEEEEEecCCCce-eeecCCCCCcEEEEecCCC
Confidence 8886553221111111 0111123 47899988753
No 214
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=24.90 E-value=6.1e+02 Score=24.14 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=55.3
Q ss_pred cceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE
Q 018336 154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI 233 (358)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~ 233 (358)
-..+|+=.-..++.+++-+|+...+.. +.+++++|++--.+.. ..++.-|+..+.-++-..+..-- +.-+.-
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~vS~P--mIV~~RvYFlsD~eG~----GnlYSvdldGkDlrrHTnFtdYY--~R~~ns 276 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNVSSP--MIVGERVYFLSDHEGV----GNLYSVDLDGKDLRRHTNFTDYY--PRNANS 276 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCcCCc--eEEcceEEEEecccCc----cceEEeccCCchhhhcCCchhcc--ccccCC
Confidence 456787777777888877777655433 3478899988544433 34666666665555444333211 112233
Q ss_pred CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336 234 GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE 269 (358)
Q Consensus 234 ~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~ 269 (358)
+|+-.|+.- -.+|+.|||+++.-+.+.
T Consensus 277 DGkrIvFq~---------~GdIylydP~td~lekld 303 (668)
T COG4946 277 DGKRIVFQN---------AGDIYLYDPETDSLEKLD 303 (668)
T ss_pred CCcEEEEec---------CCcEEEeCCCcCcceeee
Confidence 455444421 225666777766665554
No 215
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.70 E-value=7.2e+02 Score=24.95 Aligned_cols=24 Identities=13% Similarity=0.136 Sum_probs=18.3
Q ss_pred EEEeCCeEEEECCCCCCCCceEEEEECC
Q 018336 306 RVELGGCTLVTGSGYQGGPQEFYVVEGR 333 (358)
Q Consensus 306 ~~~~~~~i~v~gG~~~~~~~~i~~yd~~ 333 (358)
.+..+|.+++.||.+ +.|-+||..
T Consensus 626 sFS~dg~vLasgg~D----nsV~lWD~~ 649 (707)
T KOG0263|consen 626 SFSRDGNVLASGGAD----NSVRLWDLT 649 (707)
T ss_pred EEecCCCEEEecCCC----CeEEEEEch
Confidence 357799999999987 667667654
No 216
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=24.55 E-value=5.4e+02 Score=23.44 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=22.3
Q ss_pred EEEEeCCeEEEECCCCCCCCceEEEEECCCCc-eEee
Q 018336 305 CRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK-FRKF 340 (358)
Q Consensus 305 ~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~-W~~~ 340 (358)
++....+.+|+.||.+ ..++.+|..++- ...+
T Consensus 365 tl~~nsD~v~~~G~dn----g~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 365 TLSVNSDGVLVSGGDN----GSIMFWDWKSGHNYQRG 397 (460)
T ss_pred eeeeccCceEEEcCCc----eEEEEEecCcCcccccc
Confidence 4566778899999975 567777877654 4444
No 217
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=23.79 E-value=1.4e+02 Score=16.56 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=11.1
Q ss_pred ceEEEEECCCCc--eEee
Q 018336 325 QEFYVVEGRNGK--FRKF 340 (358)
Q Consensus 325 ~~i~~yd~~~~~--W~~~ 340 (358)
..++.+|..+++ |+.-
T Consensus 10 g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp SEEEEEETTTTSEEEEEE
T ss_pred CEEEEEECCCCCEEEeee
Confidence 467778877776 6654
No 218
>PF14066 DUF4256: Protein of unknown function (DUF4256)
Probab=23.65 E-value=1.1e+02 Score=23.95 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.9
Q ss_pred eecCccCceecccccee
Q 018336 285 GREGKLFCWAETEAAVQ 301 (358)
Q Consensus 285 ~~d~~~~~W~~lp~~~r 301 (358)
.||.++-+|-.-|...|
T Consensus 120 ~FD~KTSSWi~TP~~IR 136 (173)
T PF14066_consen 120 EFDLKTSSWIKTPDDIR 136 (173)
T ss_pred CCccccchhhcCcHHHH
Confidence 79999999988888766
No 219
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=23.62 E-value=6.2e+02 Score=23.80 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=21.9
Q ss_pred eEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336 304 TCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK 336 (358)
Q Consensus 304 ~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~ 336 (358)
+-+...++.+++.|+.+ ..+-++|+.+.+
T Consensus 282 cLais~DgtlLlSGd~d----g~VcvWdi~S~Q 310 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDED----GKVCVWDIYSKQ 310 (476)
T ss_pred EEEEecCccEEEeeCCC----CCEEEEecchHH
Confidence 44567899999999976 567778877655
No 220
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=22.60 E-value=5.4e+02 Score=22.74 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=31.8
Q ss_pred eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336 156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD 213 (358)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~ 213 (358)
.+.++|..|-.=...-+||....-.++-.-.++.+..||.+. ..-+|++.+.
T Consensus 78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN------~Csiy~ls~~ 129 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN------KCSIYPLSTR 129 (343)
T ss_pred eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc------eeEEEecccc
Confidence 456666655333333455555544444445788999999764 3677887754
No 221
>PRK01029 tolB translocation protein TolB; Provisional
Probab=22.12 E-value=6.5e+02 Score=23.50 Aligned_cols=117 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCEEEEEcCcCCCCCCCcceeEEEEC--CCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336 137 QGKLVVMGGWDPASYSPVSHVFVYDF--TTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE 214 (358)
Q Consensus 137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (358)
+..|+.....++.. .+|+++. ....=+.+..............-+..|++....... ..+++||+.++.
T Consensus 292 G~~Laf~s~~~g~~-----~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~----~~I~v~dl~~g~ 362 (428)
T PRK01029 292 GTRLVFVSNKDGRP-----RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGV----RQICVYDLATGR 362 (428)
T ss_pred CCEEEEEECCCCCc-----eEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCC----cEEEEEECCCCC
Q ss_pred eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336 215 WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA 268 (358)
Q Consensus 215 W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~ 268 (358)
.+.+...+..........-+..|++.....+.. .++.+|..+++...+
T Consensus 363 ~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~------~L~~vdl~~g~~~~L 410 (428)
T PRK01029 363 DYQLTTSPENKESPSWAIDSLHLVYSAGNSNES------ELYLISLITKKTRKI 410 (428)
T ss_pred eEEccCCCCCccceEECCCCCEEEEEECCCCCc------eEEEEECCCCCEEEe
No 222
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=21.63 E-value=6.2e+02 Score=23.05 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=46.7
Q ss_pred cCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCC-CCC--CCC-CceeEEEEECCEEEEEcCcCC
Q 018336 73 SGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVP-EYP--AGL-PLFCQVASSQGKLVVMGGWDP 148 (358)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~-~~~--~~~-~~~~~~~~~~~~lyv~Gg~~~ 148 (358)
++.....+|+......+.. .......+.+||+.+.+=..--++| .|+ .+. +..+++..-+..+|+..-
T Consensus 53 ~spDg~~lyva~~~~~R~~-----~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~--- 124 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIA-----RGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF--- 124 (352)
T ss_pred ECCCCCEEEEEeccccccc-----cCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC---
Confidence 4455667777665322211 0003467999999999754332332 222 011 112223333456787742
Q ss_pred CCCCCcceeEEEECCCCcEEe
Q 018336 149 ASYSPVSHVFVYDFTTRRWTR 169 (358)
Q Consensus 149 ~~~~~~~~~~~yd~~t~~W~~ 169 (358)
.+.+.+-+.|..+++-..
T Consensus 125 ---~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 125 ---SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred ---CCCCEEEEEECCCCcEEE
Confidence 235689999999887644
No 223
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.77 E-value=5.4e+02 Score=22.04 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=23.6
Q ss_pred EeCCeEEEECCCCCCCCceEEEEECCCCc-eEeecCCCC
Q 018336 308 ELGGCTLVTGSGYQGGPQEFYVVEGRNGK-FRKFDVPAE 345 (358)
Q Consensus 308 ~~~~~i~v~gG~~~~~~~~i~~yd~~~~~-W~~~~~p~~ 345 (358)
--+|.|||.--.. ..++++||.+++ -.++.+|.+
T Consensus 220 D~eG~L~Va~~ng----~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 220 DTEGNLYVATFNG----GTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred ccCCcEEEEEecC----cEEEEECCCCCcEEEEEEcCCC
Confidence 3478898863211 489999999987 555677744
No 224
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=20.05 E-value=4.1e+02 Score=20.36 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=34.8
Q ss_pred CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE---CCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336 187 GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI---GSEFWVVSGYKTERQGIFDESAESYQLGTG 263 (358)
Q Consensus 187 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~ 263 (358)
..+.++|- .+.+.+||.+.|+=.....++..........+ .+.+.++||.. +++-||-+-+
T Consensus 64 ~D~LliGt-------~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGnc---------si~Gfd~~G~ 127 (136)
T PF14781_consen 64 RDCLLIGT-------QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNC---------SIQGFDYEGN 127 (136)
T ss_pred cCEEEEec-------cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceE---------EEEEeCCCCc
Confidence 44666653 36799999988752222333332221111122 44588888743 4556666544
Q ss_pred c--eEE
Q 018336 264 E--WKR 267 (358)
Q Consensus 264 ~--W~~ 267 (358)
+ |..
T Consensus 128 e~fWtV 133 (136)
T PF14781_consen 128 EIFWTV 133 (136)
T ss_pred EEEEEe
Confidence 2 654
Done!