Query 018337
Match_columns 357
No_of_seqs 153 out of 758
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 1.6E-41 3.5E-46 303.8 14.3 145 14-160 4-157 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 2.3E-36 4.9E-41 261.3 12.2 142 15-160 2-152 (158)
3 smart00512 Skp1 Found in Skp1 99.9 5.9E-25 1.3E-29 181.7 10.1 100 15-115 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 5.5E-23 1.2E-27 163.2 3.5 73 88-160 1-73 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.7 8E-17 1.7E-21 122.6 5.3 61 16-80 2-62 (62)
6 KOG3473 RNA polymerase II tran 99.5 1.3E-13 2.9E-18 114.8 7.4 96 14-115 16-112 (112)
7 PF00651 BTB: BTB/POZ domain; 98.0 5.6E-05 1.2E-09 60.8 9.1 99 14-128 10-109 (111)
8 PHA02713 hypothetical protein; 97.7 0.0002 4.3E-09 75.4 9.8 106 14-139 25-132 (557)
9 smart00225 BTB Broad-Complex, 97.5 0.00034 7.3E-09 52.6 6.2 85 21-123 5-90 (90)
10 PHA03098 kelch-like protein; P 97.1 0.0024 5.2E-08 65.8 9.7 98 15-134 10-109 (534)
11 PHA02790 Kelch-like protein; P 97.0 0.0018 3.9E-08 66.8 7.1 97 17-131 23-121 (480)
12 KOG4441 Proteins containing BT 96.3 0.012 2.5E-07 62.7 7.9 95 16-129 38-133 (571)
13 KOG2716 Polymerase delta-inter 87.3 2.8 6.1E-05 40.3 8.1 102 15-133 5-108 (230)
14 KOG3433 Protein involved in me 79.3 1.6 3.5E-05 40.9 2.8 37 108-149 162-200 (203)
15 KOG4682 Uncharacterized conser 79.3 3.4 7.4E-05 43.1 5.3 108 23-150 77-187 (488)
16 COG5124 Protein predicted to b 76.1 2 4.4E-05 40.1 2.5 31 114-149 174-204 (209)
17 PF02214 BTB_2: BTB/POZ domain 59.4 4.5 9.7E-05 32.3 1.0 83 23-122 6-94 (94)
18 KOG4350 Uncharacterized conser 57.6 52 0.0011 34.9 8.4 150 14-174 44-216 (620)
19 KOG0783 Uncharacterized conser 53.1 18 0.0004 41.1 4.6 110 17-140 713-825 (1267)
20 PF07928 Vps54: Vps54-like pro 45.1 7.1 0.00015 34.4 0.0 121 23-183 1-126 (135)
21 PLN03083 E3 UFM1-protein ligas 44.6 11 0.00023 42.4 1.3 31 304-334 511-542 (803)
22 PF11822 DUF3342: Domain of un 43.8 36 0.00079 34.4 4.7 89 25-129 14-103 (317)
23 PF03962 Mnd1: Mnd1 family; I 42.6 22 0.00047 33.0 2.8 42 103-149 144-187 (188)
24 KOG2002 TPR-containing nuclear 42.1 22 0.00047 40.7 3.1 7 202-208 882-888 (1018)
25 PF14384 DUF4415: Domain of un 39.7 26 0.00056 26.8 2.3 26 305-330 34-59 (62)
26 PRK05365 malonic semialdehyde 33.6 24 0.00053 31.8 1.6 36 105-150 130-165 (195)
27 PF09278 MerR-DNA-bind: MerR, 32.2 73 0.0016 23.5 3.7 39 131-183 13-51 (65)
28 PF03656 Pam16: Pam16; InterP 31.3 35 0.00076 30.1 2.1 31 129-159 51-81 (127)
29 cd02148 Nitroreductase_5 Nitro 29.6 29 0.00063 31.0 1.4 35 106-150 124-158 (185)
30 PF14748 P5CR_dimer: Pyrroline 28.3 1.2E+02 0.0025 25.4 4.7 71 105-175 26-103 (107)
31 PF05553 DUF761: Cotton fibre 28.0 55 0.0012 23.2 2.2 26 304-331 3-28 (38)
32 KOG2422 Uncharacterized conser 27.0 42 0.00092 36.7 2.2 40 285-325 150-192 (665)
33 KOG3442 Uncharacterized conser 24.9 88 0.0019 27.9 3.4 29 131-159 54-82 (132)
34 PF01886 DUF61: Protein of unk 24.7 56 0.0012 28.9 2.2 44 306-351 1-44 (132)
35 PF12112 DUF3579: Protein of u 22.8 47 0.001 27.9 1.3 14 319-332 23-36 (92)
36 KOG1665 AFH1-interacting prote 21.3 1.1E+02 0.0023 30.2 3.6 91 14-122 8-103 (302)
37 PRK11053 dihydropteridine redu 21.2 64 0.0014 29.5 2.0 34 103-146 147-180 (217)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-41 Score=303.79 Aligned_cols=145 Identities=36% Similarity=0.562 Sum_probs=133.2
Q ss_pred CceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCC---------C
Q 018337 14 KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGR---------S 84 (357)
Q Consensus 14 s~~IkL~SsDG~iF~Vs~eaA~qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~---------s 84 (357)
+++|+|+|+||++|+|+.++|++|.+|++++.+.|++.. +.+|||| +|+|.||++||+||+||+.+++ .
T Consensus 4 ~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~-~~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~ 81 (162)
T KOG1724|consen 4 KKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADE-NDPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKELPE 81 (162)
T ss_pred CCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCcc-CCccccC-ccCHHHHHHHHHHHHHcccccccccccccccc
Confidence 689999999999999999999999999999999998643 2599999 7999999999999999998532 2
Q ss_pred ccccccccccccccChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhcccccc
Q 018337 85 NKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV 160 (357)
Q Consensus 85 ~~ei~~WD~eFL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~TpEEE~Eilk~~ 160 (357)
...++.||++|+++|..+||+||.|||||+|++|+++||++||+||+||||+|||.+|||++|+||||+.++++++
T Consensus 82 ~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~ 157 (162)
T KOG1724|consen 82 ETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKEN 157 (162)
T ss_pred cCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhcc
Confidence 2348999999999999999999999999999999999999999999999999999999999999999987777754
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-36 Score=261.25 Aligned_cols=142 Identities=32% Similarity=0.510 Sum_probs=129.7
Q ss_pred ceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCC---CC------c
Q 018337 15 SYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPG---RS------N 85 (357)
Q Consensus 15 ~~IkL~SsDG~iF~Vs~eaA~qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~---~s------~ 85 (357)
++|.|.|.||++|.|+..+|..|-+|++|+.+.+. -+.+||+| +|.|.+|.+|++||+||.... .+ .
T Consensus 2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 58999999999999999999999999999887653 37889999 899999999999999999742 11 1
Q ss_pred cccccccccccccChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhcccccc
Q 018337 86 KERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV 160 (357)
Q Consensus 86 ~ei~~WD~eFL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~TpEEE~Eilk~~ 160 (357)
.....||+.|+.+|+++|++++.|||||+|++|+++||+.||.||+||||+|||++|||++||||||++.+++++
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkEn 152 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKEN 152 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHhc
Confidence 245679999999999999999999999999999999999999999999999999999999999999999998875
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.92 E-value=5.9e-25 Score=181.65 Aligned_cols=100 Identities=32% Similarity=0.504 Sum_probs=88.8
Q ss_pred ceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCc---cccccc
Q 018337 15 SYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSN---KERKMF 91 (357)
Q Consensus 15 ~~IkL~SsDG~iF~Vs~eaA~qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~---~ei~~W 91 (357)
.+|+|+|+||++|.|+.++|++|++|++|+.+.|.+.+.+.+|||| +|++.+|++|++||+||+..+... ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5899999999999999999999999999999877643333689999 899999999999999999764322 357999
Q ss_pred cccccccChHHHHHHHhhcccCCC
Q 018337 92 DEKFIRMDTKKLCELTSAADSLQL 115 (357)
Q Consensus 92 D~eFL~iD~~~L~eLI~AAnyLdI 115 (357)
|.+|++++.+.||+|+.||+||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.87 E-value=5.5e-23 Score=163.16 Aligned_cols=73 Identities=38% Similarity=0.616 Sum_probs=62.8
Q ss_pred cccccccccccChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhcccccc
Q 018337 88 RKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV 160 (357)
Q Consensus 88 i~~WD~eFL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~TpEEE~Eilk~~ 160 (357)
+++||++|++++.+.|++|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+|+||++++++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e~ 73 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKEN 73 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHHC
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHHc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999987743
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.66 E-value=8e-17 Score=122.60 Aligned_cols=61 Identities=26% Similarity=0.431 Sum_probs=54.1
Q ss_pred eEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCC
Q 018337 16 YIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQV 80 (357)
Q Consensus 16 ~IkL~SsDG~iF~Vs~eaA~qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~ 80 (357)
+|+|+|+||++|.|+.++|++|++|++|+.+.+.. ..+|||| +|++.+|++|++||+||++
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~~ 62 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHKN 62 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcCC
Confidence 79999999999999999999999999999876543 2279999 8999999999999999963
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.46 E-value=1.3e-13 Score=114.81 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=83.2
Q ss_pred CceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCC-CCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCcccccccc
Q 018337 14 KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGS-SKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFD 92 (357)
Q Consensus 14 s~~IkL~SsDG~iF~Vs~eaA~qS~tIr~mLed~g~g~-~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD 92 (357)
+.+|+|+|+||.+|.|.+++|+.|++|+.|+...|..+ ...+.+.++ +|.|.+|+||++|+.|......+..++++|
T Consensus 16 ~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF- 93 (112)
T KOG3473|consen 16 SMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPEF- 93 (112)
T ss_pred hhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCCC-
Confidence 67999999999999999999999999999998665433 245678999 799999999999999877666655678887
Q ss_pred ccccccChHHHHHHHhhcccCCC
Q 018337 93 EKFIRMDTKKLCELTSAADSLQL 115 (357)
Q Consensus 93 ~eFL~iD~~~L~eLI~AAnyLdI 115 (357)
.+.+++.++|+.||+||++
T Consensus 94 ----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 94 ----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred ----CCCHHHHHHHHHHhhhhcC
Confidence 4899999999999999974
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.97 E-value=5.6e-05 Score=60.84 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=75.7
Q ss_pred CceEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCcccccccc
Q 018337 14 KSYIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFD 92 (357)
Q Consensus 14 s~~IkL~SsDG~iF~Vs~eaA~-qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD 92 (357)
...++|+..||..|.|.+.++. .|+.++.++...+........|+++ ++++.++..+++||...... ++
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~~------~~--- 79 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEIE------IN--- 79 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEEE------EE---
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCccc------CC---
Confidence 4678999999999999999985 6999999988763222122358888 79999999999999433221 11
Q ss_pred ccccccChHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 018337 93 EKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALAR 128 (357)
Q Consensus 93 ~eFL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~ 128 (357)
..+.+.+|+.+|++|+|+.|...|+..+..
T Consensus 80 ------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 ------SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -------TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 367799999999999999999999988754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=97.67 E-value=0.0002 Score=75.37 Aligned_cols=106 Identities=10% Similarity=0.050 Sum_probs=84.1
Q ss_pred CceEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCC-CCcccccCCCCCHHHHHHHHHHHhhcCCCCCCccccccc
Q 018337 14 KSYIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGSS-KNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMF 91 (357)
Q Consensus 14 s~~IkL~SsDG~iF~Vs~eaA~-qS~tIr~mLed~g~g~~-~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~W 91 (357)
-.-|+|...+|+.|.+.+.++. .|+.++.|+.. ++-+. ....|.|. .|+..+|+.||+|+....
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------ 90 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------ 90 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC------------
Confidence 4578888878999999999887 69999998864 33221 24568897 799999999999987632
Q ss_pred cccccccChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHH
Q 018337 92 DEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIR 139 (357)
Q Consensus 92 D~eFL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIR 139 (357)
++.+.+.+|+.||++|+|+.|.++||..+...+.-.+-=+|.
T Consensus 91 ------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~ 132 (557)
T PHA02713 91 ------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMY 132 (557)
T ss_pred ------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHH
Confidence 245679999999999999999999999998876655544444
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.47 E-value=0.00034 Score=52.60 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=66.0
Q ss_pred eCCCCEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccccccC
Q 018337 21 TTDGSIQQVEEEVAMF-CPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMD 99 (357)
Q Consensus 21 SsDG~iF~Vs~eaA~q-S~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eFL~iD 99 (357)
..+|..|.|.+.++.. |+.++.++...... .....|.++ +++..+|+.|++||..-.. .++
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~-~~~~~i~l~-~~~~~~f~~~l~~ly~~~~----------------~~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDFKE-SKKSEIYLD-DVSPEDFRALLEFLYTGKL----------------DLP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCCcc-CCCCEEEec-CCCHHHHHHHHHeecCcee----------------ecC
Confidence 4577999999988875 78999887743221 124578898 6999999999999986432 233
Q ss_pred hHHHHHHHhhcccCCCchHHHHHH
Q 018337 100 TKKLCELTSAADSLQLKPLVDLTS 123 (357)
Q Consensus 100 ~~~L~eLI~AAnyLdIk~LldL~c 123 (357)
...+.+|+.+|.+++++.|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 447899999999999999998874
No 10
>PHA03098 kelch-like protein; Provisional
Probab=97.12 E-value=0.0024 Score=65.77 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=76.9
Q ss_pred ceEEEEe-CCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCcccccccc
Q 018337 15 SYIWVQT-TDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFD 92 (357)
Q Consensus 15 ~~IkL~S-sDG~iF~Vs~eaA~-qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD 92 (357)
+.++|.- .+|+.|.+.+.++. .|+.++.|+... +. ...|.|+ . +..+|+.|++|+..-.-
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~-~~---~~~i~l~-~-~~~~~~~~l~y~Ytg~~------------ 71 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNN-FK---ENEINLN-I-DYDSFNEVIKYIYTGKI------------ 71 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCC-CC---CceEEec-C-CHHHHHHHHHHhcCCce------------
Confidence 3455554 78999999999986 589999988643 21 4568897 5 99999999999876542
Q ss_pred ccccccChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCC
Q 018337 93 EKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKT 134 (357)
Q Consensus 93 ~eFL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~IkGKT 134 (357)
.++.+.+.+|+.||++|+|+.|.++|++.+...|.-.+
T Consensus 72 ----~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n 109 (534)
T PHA03098 72 ----NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN 109 (534)
T ss_pred ----EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence 34666799999999999999999999999877654333
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=96.96 E-value=0.0018 Score=66.79 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=70.6
Q ss_pred EEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCcccccC-CCCCHHHHHHHHHHHhhcCCCCCCcccccccccc
Q 018337 17 IWVQTTDGSIQQVEEEVA-MFCPMICREIIQTGMGSSKNYAISLP-QRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEK 94 (357)
Q Consensus 17 IkL~SsDG~iF~Vs~eaA-~qS~tIr~mLed~g~g~~~~~~IPLP-~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD~e 94 (357)
-.+...-|..|.+.+.++ ..|+.++.|+.. ++.++. ..|.+. ..|+..+|+.||+|+..-+
T Consensus 23 ~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~--------------- 85 (480)
T PHA02790 23 KTIIEAIGGNIIVNSTILKKLSPYFRTHLRQ-KYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGK--------------- 85 (480)
T ss_pred ceEEEEcCcEEeeehhhhhhcCHHHHHHhcC-Cccccc-cceEEEecCcCHHHHHHHHHhheeee---------------
Confidence 344455688999999995 569999999864 343222 234431 2699999999999984333
Q ss_pred ccccChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 018337 95 FIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIE 131 (357)
Q Consensus 95 FL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~Ik 131 (357)
+.++.+.+.+|+.||++|+|+.+++.||+.+...|.
T Consensus 86 -l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 86 -VYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFR 121 (480)
T ss_pred -EEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 235666788999999999999999999988765544
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.30 E-value=0.012 Score=62.68 Aligned_cols=95 Identities=24% Similarity=0.295 Sum_probs=75.8
Q ss_pred eEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCcccccccccc
Q 018337 16 YIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEK 94 (357)
Q Consensus 16 ~IkL~SsDG~iF~Vs~eaA~-qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD~e 94 (357)
.+.|.-.+ +.|...+-++. .|+.++.|+.. +..+.....|.|. .|++.+|..+++|+.....
T Consensus 38 Dv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~i-------------- 100 (571)
T KOG4441|consen 38 DVTLLVGD-REFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGKL-------------- 100 (571)
T ss_pred eEEEEECC-eeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcceE--------------
Confidence 45555554 88888888875 59999998885 3333356778998 6999999999999877663
Q ss_pred ccccChHHHHHHHhhcccCCCchHHHHHHHHHHHH
Q 018337 95 FIRMDTKKLCELTSAADSLQLKPLVDLTSRALARI 129 (357)
Q Consensus 95 FL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~ 129 (357)
.++.+.+-+|+.||.+|+|..+++.||..+...
T Consensus 101 --~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 101 --EISEDNVQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred --EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 467888999999999999999999999887653
No 13
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=87.35 E-value=2.8 Score=40.34 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=75.1
Q ss_pred ceEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcC-CCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCcccccccc
Q 018337 15 SYIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTG-MGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFD 92 (357)
Q Consensus 15 ~~IkL~SsDG~iF~Vs~eaA~-qS~tIr~mLed~g-~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD 92 (357)
..|+| ---|.+|.-+...+. +.+.++.|++... ...+....|=| +-++.-+..|+.|++--..+ +|+
T Consensus 5 ~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LPe-- 73 (230)
T KOG2716|consen 5 ETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LPE-- 73 (230)
T ss_pred ceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Ccc--
Confidence 34443 345889998888886 4778888777542 12122334555 58899999999999843321 332
Q ss_pred ccccccChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCC
Q 018337 93 EKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGK 133 (357)
Q Consensus 93 ~eFL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~IkGK 133 (357)
+...|-+|+.-|.|..+.+|+++|..+++..+.+.
T Consensus 74 ------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 74 ------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred ------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 57789999999999999999999999999988776
No 14
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.31 E-value=1.6 Score=40.90 Aligned_cols=37 Identities=32% Similarity=0.589 Sum_probs=29.0
Q ss_pred hhccc--CCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 018337 108 SAADS--LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 149 (357)
Q Consensus 108 ~AAny--LdIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~T 149 (357)
.|||. =+|--|.++||+.. |.-+.+||+.||||+||.
T Consensus 162 eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 162 EAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred HHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 44443 26777888888665 889999999999999874
No 15
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=79.30 E-value=3.4 Score=43.09 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=73.8
Q ss_pred CCCEEEecHHHHHHcHHHHHHHhhcCCCCCC---CcccccCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccccccC
Q 018337 23 DGSIQQVEEEVAMFCPMICREIIQTGMGSSK---NYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMD 99 (357)
Q Consensus 23 DG~iF~Vs~eaA~qS~tIr~mLed~g~g~~~---~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eFL~iD 99 (357)
=|.+..+..--+.||+.+..|..-..-.+.. .-.||=| +|+-+.|.-++-=+.+.- +.++
T Consensus 77 lg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE----------------veI~ 139 (488)
T KOG4682|consen 77 LGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDP-NIDVVALQVAFGSLYRDE----------------VEIK 139 (488)
T ss_pred ccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCC-cccHHHHHHHHhhhhhhh----------------eecc
Confidence 3677777777788888888877644322111 1246667 788888887765443221 3578
Q ss_pred hHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCCh
Q 018337 100 TKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 150 (357)
Q Consensus 100 ~~~L~eLI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~Tp 150 (357)
.+.+..++.||.+|.+++|++-|...+-..|+-| -+..++....-+-.
T Consensus 140 l~dv~gvlAaA~~lqldgl~qrC~evMie~lspk---ta~~yYea~ckYgl 187 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPK---TACGYYEAACKYGL 187 (488)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChh---hhhHhhhhhhhhhh
Confidence 8999999999999999999999988766555544 45555554444433
No 16
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=76.10 E-value=2 Score=40.14 Aligned_cols=31 Identities=32% Similarity=0.644 Sum_probs=25.2
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 018337 114 QLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 149 (357)
Q Consensus 114 dIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~T 149 (357)
+|.-|.++.|+.. |..|+|||+.||||+||.
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld 204 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD 204 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence 5666777777654 789999999999999874
No 17
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=59.43 E-value=4.5 Score=32.28 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=53.1
Q ss_pred CCCEEEecHHHHHHc--HHHHHHHhhc--CCCCCCCcccccCCCCCHHHHHHHHHHHhhc-CCCCCCccccccccccccc
Q 018337 23 DGSIQQVEEEVAMFC--PMICREIIQT--GMGSSKNYAISLPQRVNPAIFGLVLDYCRFH-QVPGRSNKERKMFDEKFIR 97 (357)
Q Consensus 23 DG~iF~Vs~eaA~qS--~tIr~mLed~--g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~H-k~~~~s~~ei~~WD~eFL~ 97 (357)
-|+.|.+....+..- +.+..++... .........+=| +-++..++.|+.|++.. .-+.
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~~~l~~--------------- 68 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTGGKLPI--------------- 68 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHTSSB-----------------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhcCccCC---------------
Confidence 589999999998732 3555555532 111113345555 58999999999999985 2110
Q ss_pred cChHHHHHHHhhcccCCCchH-HHHH
Q 018337 98 MDTKKLCELTSAADSLQLKPL-VDLT 122 (357)
Q Consensus 98 iD~~~L~eLI~AAnyLdIk~L-ldL~ 122 (357)
.+...+-.|...|.|.+|..| ++.|
T Consensus 69 ~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 69 PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCchhHHHHHHHHHHcCCCccccCCC
Confidence 123457788999999999998 6544
No 18
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=57.61 E-value=52 Score=34.89 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=94.2
Q ss_pred CceEEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCC--CCC------
Q 018337 14 KSYIWVQTTDGSIQQVEEEVA-MFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVP--GRS------ 84 (357)
Q Consensus 14 s~~IkL~SsDG~iF~Vs~eaA-~qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~--~~s------ 84 (357)
-..++++-.| ..|...+-++ ..|..++.++- .|+.++....|||. .-++..++.++.|...-+.. +-.
T Consensus 44 y~DVtfvve~-~rfpAHRvILAaRs~yFRAlLY-gGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld 120 (620)
T KOG4350|consen 44 YSDVTFVVED-TRFPAHRVILAARSSYFRALLY-GGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLD 120 (620)
T ss_pred ccceEEEEec-cccchhhhhHHHHHHHHHHHHh-hhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHH
Confidence 3456666655 5666555443 56999998665 35555556779997 57799999999998765542 100
Q ss_pred -------------ccccccccccccccChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChH
Q 018337 85 -------------NKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEE 151 (357)
Q Consensus 85 -------------~~ei~~WD~eFL~iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~TpE 151 (357)
...++++-.+. +..+.+|-++.||.+.++..|.++||.. ..+.+.++-.--+.. -++.+
T Consensus 121 ~LslAh~Ygf~~Le~aiSeYl~~i--L~~~NvCmifdaA~ly~l~~Lt~~C~mf-----mDrnA~~lL~~~sFn-~LSk~ 192 (620)
T KOG4350|consen 121 YLSLAHRYGFIQLETAISEYLKEI--LKNENVCMIFDAAYLYQLTDLTDYCMMF-----MDRNADQLLEDPSFN-RLSKD 192 (620)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHH--HcccceeeeeeHHHHhcchHHHHHHHHH-----HhcCHHhhhcCcchh-hhhHH
Confidence 01123332333 3556788889999999999999999954 466777765432222 24445
Q ss_pred hhhcccc-ccCCChHHHHHHHHHH
Q 018337 152 EKLEPLN-NVTDDPRIRLLNRLYA 174 (357)
Q Consensus 152 EE~Eilk-~~~~dp~~rlln~l~~ 174 (357)
-.++++. .-|-.|-+..++-+..
T Consensus 193 sL~e~l~RDsFfApE~~IFlAv~~ 216 (620)
T KOG4350|consen 193 SLKELLARDSFFAPELKIFLAVRS 216 (620)
T ss_pred HHHHHHhhhcccchHHHHHHHHHH
Confidence 4444443 3355677777766544
No 19
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=53.07 E-value=18 Score=41.09 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=65.9
Q ss_pred EEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccc
Q 018337 17 IWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKF 95 (357)
Q Consensus 17 IkL~SsDG~iF~Vs~eaA~-qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eF 95 (357)
..++..||+++....-++. .+.++..|+.-..+..+.-.+--.| ++++.|+-|++|+.---. ..|
T Consensus 713 ~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d~------------~~~ 778 (1267)
T KOG0783|consen 713 TVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDDK------------VEL 778 (1267)
T ss_pred EEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccch------------HHH
Confidence 3444559998876544432 2334444444333321111112233 779999999999863221 112
Q ss_pred cc--cChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 018337 96 IR--MDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 140 (357)
Q Consensus 96 L~--iD~~~L~eLI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIRk 140 (357)
++ ...+-+|+++..|+-|=|..|-++|-+.+-+.+.=|+.-++-+
T Consensus 779 ~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 779 FKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred HhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 22 2344588999999988898888888888888887776555433
No 20
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=45.10 E-value=7.1 Score=34.44 Aligned_cols=121 Identities=20% Similarity=0.294 Sum_probs=13.8
Q ss_pred CCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccccccChHH
Q 018337 23 DGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKK 102 (357)
Q Consensus 23 DG~iF~Vs~eaA~qS~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eFL~iD~~~ 102 (357)
||+.|.|...++..-++|.+.+.- ...+| .+.++++.++++|++.. +..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~~---------~~~~P-~~a~di~~~l~elLk~f---------------------NSr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQL---------ASNFP-SLAPDILSRLLELLKLF---------------------NSR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHHH---------HHHCc-hhHHHHHHHHHHHHHHH---------------------HHH
Confidence 566666666666555555543221 22355 46667777777665433 345
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCC-----CHHHHHhHcCCCCCCChHhhhccccccCCChHHHHHHHHHHHHH
Q 018337 103 LCELTSAADSLQLKPLVDLTSRALARIIEGK-----TPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKR 177 (357)
Q Consensus 103 L~eLI~AAnyLdIk~LldL~c~~VA~~IkGK-----TpEEIRk~FgI~eD~TpEEE~Eilk~~~~dp~~rlln~l~~~~~ 177 (357)
.++|+..|-....-+|-.++.+.+|-..+.- -.--||..|.-- .++- ...++ -.|+-+.+.|+.++
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLALasq~L~~~~~lip~i~~~~~~~--~~~~-~~~~~------~~fd~v~~dy~~H~ 120 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLALASQSLSFIISLIPYIREFFERH--LPSK-QQSLL------REFDKVKRDYQDHQ 120 (135)
T ss_dssp -------------------------------------------------------HHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc-cchHH------HHHHHHHHHHHHHH
Confidence 7788888888888888887777766543321 123344444432 1110 00111 13556777888888
Q ss_pred HHHHHH
Q 018337 178 KELKER 183 (357)
Q Consensus 178 ~e~~~~ 183 (357)
.|+..+
T Consensus 121 ~eI~~K 126 (135)
T PF07928_consen 121 NEIFSK 126 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 21
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=44.57 E-value=11 Score=42.38 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHhHHHHHHH-HHhcCChhHHHHHHHhhccc
Q 018337 304 EELDREVEDFA-RRLNSDWPQRMQEILSLGQD 334 (357)
Q Consensus 304 ~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~ 334 (357)
++|-+++.+-. +-||..|.+|.++++...++
T Consensus 511 ~~ll~~lA~~l~p~l~~~~~~~~~~~~~~~~~ 542 (803)
T PLN03083 511 GSILKHLADHLRPMLINSLKERRKALFTENAE 542 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 46677776655 45899999999998764433
No 22
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=43.79 E-value=36 Score=34.39 Aligned_cols=89 Identities=10% Similarity=0.108 Sum_probs=59.5
Q ss_pred CEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccccccChHHH
Q 018337 25 SIQQVEEEVAMF-CPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKL 103 (357)
Q Consensus 25 ~iF~Vs~eaA~q-S~tIr~mLed~g~g~~~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eFL~iD~~~L 103 (357)
+.|..+...+.. .++++..+...-.+.....+|+|-+.-+-.|++=.++|++... + .++.+..
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~---------p-------~l~~~Nv 77 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP---------P-------SLTPSNV 77 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC---------C-------cCCcCcE
Confidence 678888888754 7788877643100111234455543456677777777776611 1 2466778
Q ss_pred HHHHhhcccCCCchHHHHHHHHHHHH
Q 018337 104 CELTSAADSLQLKPLVDLTSRALARI 129 (357)
Q Consensus 104 ~eLI~AAnyLdIk~LldL~c~~VA~~ 129 (357)
..++.-|+||+|++|++.|-.++...
T Consensus 78 vsIliSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 78 VSILISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred EEeEehhhhhccHHHHHHHHHHHHHh
Confidence 88899999999999999998887543
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.60 E-value=22 Score=32.98 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=30.3
Q ss_pred HHHHHhhcccC--CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 018337 103 LCELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 149 (357)
Q Consensus 103 L~eLI~AAnyL--dIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~T 149 (357)
+..+..||+.. +|-.|..+|++. -|.+.++|++.||||+||.
T Consensus 144 ~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 144 IKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence 44445566654 566666666653 3899999999999999874
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=42.08 E-value=22 Score=40.75 Aligned_cols=7 Identities=14% Similarity=0.453 Sum_probs=4.6
Q ss_pred HHhhhhh
Q 018337 202 DDLLSFI 208 (357)
Q Consensus 202 d~ll~fi 208 (357)
.+.+.|+
T Consensus 882 k~~~~~~ 888 (1018)
T KOG2002|consen 882 KEILKLP 888 (1018)
T ss_pred HHHHhcc
Confidence 5566777
No 25
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=39.69 E-value=26 Score=26.82 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHh
Q 018337 305 ELDREVEDFARRLNSDWPQRMQEILS 330 (357)
Q Consensus 305 ~~~~~~~~f~~~~~~~~~~~~~~~~~ 330 (357)
.||.+|-+|.+..-..|.-||+++|.
T Consensus 34 rld~dVl~~fka~G~gyQtriN~~Lr 59 (62)
T PF14384_consen 34 RLDPDVLEWFKAQGKGYQTRINEALR 59 (62)
T ss_pred EeCHHHHHHHHHHChhHHHHHHHHHH
Confidence 46788889999999999999999985
No 26
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=33.60 E-value=24 Score=31.83 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=28.1
Q ss_pred HHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCCh
Q 018337 105 ELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 150 (357)
Q Consensus 105 eLI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~Tp 150 (357)
.|+.||..|++.. .++.|-..+.+++.|||++++.+
T Consensus 130 ~l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~~~ 165 (195)
T PRK05365 130 YLILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTWKS 165 (195)
T ss_pred HHHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCeeE
Confidence 3888888888876 24567788999999999876543
No 27
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=32.23 E-value=73 Score=23.53 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=26.0
Q ss_pred hCCCHHHHHhHcCCCCCCChHhhhccccccCCChHHHHHHHHHHHHHHHHHHH
Q 018337 131 EGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKER 183 (357)
Q Consensus 131 kGKTpEEIRk~FgI~eD~TpEEE~Eilk~~~~dp~~rlln~l~~~~~~e~~~~ 183 (357)
-|-|.+||++++.+.++ .+|.......+.+.+++++.++
T Consensus 13 lGfsL~eI~~~l~l~~~--------------~~~~~~~~~~~l~~~~~~i~~~ 51 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQ--------------GDPPCADRRALLEEKLEEIEEQ 51 (65)
T ss_dssp TT--HHHHHHHHHHCCS--------------HCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 49999999999988764 1334444556777778777766
No 28
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=31.30 E-value=35 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=17.1
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 018337 129 IIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 159 (357)
Q Consensus 129 ~IkGKTpEEIRk~FgI~eD~TpEEE~Eilk~ 159 (357)
...|.|.+|-++++||+...++||-.+.-+.
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~ 81 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKRYKH 81 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 4468999999999999998888886655443
No 29
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=29.58 E-value=29 Score=31.00 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=27.6
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCCh
Q 018337 106 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 150 (357)
Q Consensus 106 LI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~eD~Tp 150 (357)
|+.||..|++.. .+|.|-..+++++.|||++++.+
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~~~ 158 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRWRS 158 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCeEE
Confidence 888888888875 35567788999999999876543
No 30
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=28.35 E-value=1.2e+02 Score=25.39 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=45.4
Q ss_pred HHHhhcccCCCch-----HHHHHHHHHHHHHh--CCCHHHHHhHcCCCCCCChHhhhccccccCCChHHHHHHHHHHH
Q 018337 105 ELTSAADSLQLKP-----LVDLTSRALARIIE--GKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYAR 175 (357)
Q Consensus 105 eLI~AAnyLdIk~-----LldL~c~~VA~~Ik--GKTpEEIRk~FgI~eD~TpEEE~Eilk~~~~dp~~rlln~l~~~ 175 (357)
.|+.||-..+|+. |+--++.-.|.++. +++|+++++..--|.-.|.+=.....+..+.+.+.+.+..-+.|
T Consensus 26 al~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~gl~~L~~~~~~~~~~~a~~aa~~R 103 (107)
T PF14748_consen 26 ALADAAVAQGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAGLEVLEKGGLRAAIMEALEAAVER 103 (107)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 4556666666664 44455555566666 67999999999999999888777666654455555655555444
No 31
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=28.05 E-value=55 Score=23.22 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHhcCChhHHHHHHHhh
Q 018337 304 EELDREVEDFARRLNSDWPQRMQEILSL 331 (357)
Q Consensus 304 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 331 (357)
++||+-+|+|.++.+-.| |||..-|+
T Consensus 3 ~evd~rAe~FI~~f~~ql--rlqr~~S~ 28 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQL--RLQRQESL 28 (38)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 578999999999999887 66654443
No 32
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.02 E-value=42 Score=36.74 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=18.1
Q ss_pred CcccccCCCCCCCC---ChHHHHHHhHHHHHHHHHhcCChhHHH
Q 018337 285 PKMEFDDGEIDDDL---DPAMKEELDREVEDFARRLNSDWPQRM 325 (357)
Q Consensus 285 ~~~~~~~~~~~~~~---d~~~~~~~~~~~~~f~~~~~~~~~~~~ 325 (357)
|-+.+.+.+.++.. +-.+-.+.-+=+-+ -+.||-+-+=+.
T Consensus 150 ~~v~~i~~~~~~~~~~l~r~l~~k~~k~~v~-~~~lnpdtE~k~ 192 (665)
T KOG2422|consen 150 DWVLEIDLKSDPLFTELPRSLGSKSCKLFVD-FKKLNPDTEFKL 192 (665)
T ss_pred hhHHHHhhhcccccCccchhHHHHHHHHHHh-hhccCCCchhhh
Confidence 34666665555433 32222233222322 256777665433
No 33
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.90 E-value=88 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.0
Q ss_pred hCCCHHHHHhHcCCCCCCChHhhhccccc
Q 018337 131 EGKTPEEIRETFHLPDDLTEEEKLEPLNN 159 (357)
Q Consensus 131 kGKTpEEIRk~FgI~eD~TpEEE~Eilk~ 159 (357)
-|.|.+|-++++||.+++.+||.++.-..
T Consensus 54 ~~iTlqEa~qILnV~~~ln~eei~k~yeh 82 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKEPLNREEIEKRYEH 82 (132)
T ss_pred ccccHHHHhhHhCCCCCCCHHHHHHHHHH
Confidence 45689999999999998888887655433
No 34
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=24.67 E-value=56 Score=28.91 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=31.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHhhcccceeeeEeecCCcccccc
Q 018337 306 LDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCSSRRC 351 (357)
Q Consensus 306 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (357)
|||=++...+++|+.||.+=.-+-.+-+|-+|. .+..||+.+++
T Consensus 1 ~dr~~~~ei~~iN~~lP~~rktL~eLL~ee~P~--i~lrdG~~h~f 44 (132)
T PF01886_consen 1 IDRILEKEIRRINKHLPRERKTLKELLEEEKPS--IILRDGSRHRF 44 (132)
T ss_pred ChhHHHHHHHHHHhhchHhhhhHHHHHhCCCCe--EEecCCCEEEE
Confidence 467788889999999997766666677777763 33446776654
No 35
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=22.84 E-value=47 Score=27.92 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=11.2
Q ss_pred CChhHHHHHHHhhc
Q 018337 319 SDWPQRMQEILSLG 332 (357)
Q Consensus 319 ~~~~~~~~~~~~~~ 332 (357)
|||.||+-.+||.-
T Consensus 23 SDWaERL~gvla~F 36 (92)
T PF12112_consen 23 SDWAERLCGVLASF 36 (92)
T ss_dssp TTHHHHHHHTT-EE
T ss_pred ccHHHHHHHHHHcc
Confidence 89999999887763
No 36
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=21.33 E-value=1.1e+02 Score=30.23 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=60.0
Q ss_pred CceEEEEeCCCCEEEecHH--HHHH-cHHHHHHHhhcCCCCC--CCcccccCCCCCHHHHHHHHHHHhhcCCCCCCcccc
Q 018337 14 KSYIWVQTTDGSIQQVEEE--VAMF-CPMICREIIQTGMGSS--KNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKER 88 (357)
Q Consensus 14 s~~IkL~SsDG~iF~Vs~e--aA~q-S~tIr~mLed~g~g~~--~~~~IPLP~nVsS~iLkkIIEYCe~Hk~~~~s~~ei 88 (357)
+++|+|- -.|+.|.-..+ +.+. -.++..|+...|.+.. +...+-| +-++.-++-|+.|+.+-+-+.
T Consensus 8 ~~~vrln-igGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI--DRsp~yFepIlNyLr~Gq~~~------ 78 (302)
T KOG1665|consen 8 SSMVRLN-IGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI--DRSPKYFEPILNYLRDGQIPS------ 78 (302)
T ss_pred hhhheee-cCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE--ccCchhhHHHHHHHhcCceee------
Confidence 4556554 35666654333 3322 3466778887764432 2334555 478899999999998876432
Q ss_pred ccccccccccChHHHHHHHhhcccCCCchHHHHH
Q 018337 89 KMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLT 122 (357)
Q Consensus 89 ~~WD~eFL~iD~~~L~eLI~AAnyLdIk~LldL~ 122 (357)
...-.+++++.+|.|.+|-+|++-.
T Consensus 79 ---------~s~i~~lgvLeeArff~i~sL~~hl 103 (302)
T KOG1665|consen 79 ---------LSDIDCLGVLEEARFFQILSLKDHL 103 (302)
T ss_pred ---------cCCccHHHHHHHhhHHhhHhHHhHH
Confidence 2344588999999999999998743
No 37
>PRK11053 dihydropteridine reductase; Provisional
Probab=21.15 E-value=64 Score=29.54 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=25.5
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCC
Q 018337 103 LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPD 146 (357)
Q Consensus 103 L~eLI~AAnyLdIk~LldL~c~~VA~~IkGKTpEEIRk~FgI~e 146 (357)
+..|+.||..|++..- .|.|-.++.+++.|||++
T Consensus 147 ~~~lmLaA~~~Glgs~----------~i~g~~~~~v~~~l~ip~ 180 (217)
T PRK11053 147 LGNLLLGAAALGIDAT----------PIEGFDAAILDAEFGLRE 180 (217)
T ss_pred HHHHHHHHHHcCCCCC----------CcCCcCHHHHHHHhCCCC
Confidence 3467777777777643 456778999999999985
Done!