BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018338
(357 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KI24|MTHSD_BOVIN Methenyltetrahydrofolate synthase domain-containing protein OS=Bos
taurus GN=MTHFSD PE=2 SV=1
Length = 380
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/258 (51%), Positives = 168/258 (65%), Gaps = 4/258 (1%)
Query: 99 IRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQKQ 158
IR++IWD ME QN+A PRPVHHRIPNF GAS AA++ L+ F++A +KVNPD+PQK
Sbjct: 12 IREQIWDYMESQNLADFPRPVHHRIPNFKGASRAAEHFPRLQAFKMARTIKVNPDAPQKN 71
Query: 159 VRLLTLSGGKKLLTPQPRLRTGFFSVLDSSMLSPSTINEAC-TSVGVAKYGKQIGLDEII 217
R L K LL P PRLRTG F+ + + I C TS GV Y +GLD +
Sbjct: 72 ARFFVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNYSTPVGLDSKV 131
Query: 218 KVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIP 277
VDL+V+GSVAV+ K G R+GKGEG+A+LEY M+ MGA+ TPVVT VHD Q+V DIP
Sbjct: 132 LVDLVVVGSVAVSEK-GWRIGKGEGYADLEYAMMVSMGAVSQGTPVVTIVHDCQVV-DIP 189
Query: 278 VEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRILRELKGRIEQET 337
L HD+ VD I TPT+VI T PKP GI W K+S E LG++ ILR L+ + E++
Sbjct: 190 EALLEDHDLTVDYILTPTRVITTGCERPKPAGIAWSKISCEMLGKMPILRSLRHQ-EEQA 248
Query: 338 GKEQTCGPSEKLPPMAKR 355
GK+ T + PP A R
Sbjct: 249 GKDVTLRDGPRSPPGATR 266
>sp|Q2M296|MTHSD_HUMAN Methenyltetrahydrofolate synthase domain-containing protein OS=Homo
sapiens GN=MTHFSD PE=1 SV=2
Length = 383
Score = 227 bits (579), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/254 (51%), Positives = 164/254 (64%), Gaps = 5/254 (1%)
Query: 99 IRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQKQ 158
IR++IW ME QN+A PRPVHHRIPNF G+ +A +N+ L+ F VKV+PD P +
Sbjct: 13 IREQIWGYMESQNLADFPRPVHHRIPNFKGSYLACQNIKDLDVFARTQEVKVDPDKPLEG 72
Query: 159 VRLLTLSGGKKLLTPQPRLRTGFFSVLDSSMLSPSTINEAC-TSVGVAKYGKQIGLDEII 217
VRLL L K LL P PRLRTG F+ + + I C TS GV Y IGLD +
Sbjct: 73 VRLLVLQSKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNYSVPIGLDSRV 132
Query: 218 KVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIP 277
VDL+V+GSVAV+ K G R+GKGEG+A+LEY M+ MGA+ TPVVT VHD Q+V DIP
Sbjct: 133 LVDLVVVGSVAVSEK-GWRIGKGEGYADLEYAMMVSMGAVSKETPVVTIVHDCQVV-DIP 190
Query: 278 VEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRILRELKGRIEQET 337
E + HD+ VD I TPT+VI T PKP GI W K+S E + +I ILR L+ R EQ+
Sbjct: 191 EELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRAR-EQQA 249
Query: 338 GKEQTC-GPSEKLP 350
GK+ T G + LP
Sbjct: 250 GKDVTLQGEHQHLP 263
>sp|Q0P464|MTHSD_DANRE Methenyltetrahydrofolate synthase domain-containing protein
OS=Danio rerio GN=mthfsd PE=2 SV=1
Length = 382
Score = 218 bits (554), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 162/246 (65%), Gaps = 4/246 (1%)
Query: 96 KWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSP 155
KW +R ++W+ +EV+N+A PRPVH+RIPNF GA A + LE F + VKV+PD P
Sbjct: 13 KWDVRHKVWNYIEVKNLANFPRPVHNRIPNFKGALEACNKVAQLEIFIESAVVKVDPDKP 72
Query: 156 QKQVRLLTLSGGKKLLTPQPRLRTGFFS-VLDSSMLSPSTINEACTSVGVAKYGKQIGLD 214
+ VRL L K LL P PRLR G F+ + + T+ TS G+ ++ +GLD
Sbjct: 73 MEGVRLAALKARKSLLVPTPRLRFGLFNRITPPKGATKETLRVCSTSQGIKEFSVPVGLD 132
Query: 215 EIIKVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVD 274
+ ++VDL+V+GSVAV+ K G R+GKGEGFA++EY M+ MG++ +ST V+T VHD Q++
Sbjct: 133 DKVQVDLVVVGSVAVSEK-GYRIGKGEGFADMEYAMMACMGSVTESTWVITVVHDCQVM- 190
Query: 275 DIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRILRELKGRIE 334
DIP E + HD+ VD I T T+VI T PKPQGI W L E+L +I IL++L+ +E
Sbjct: 191 DIPEELIERHDLMVDFIITATRVIKTECKHPKPQGIIWSMLHKEELKKIPILKKLRT-LE 249
Query: 335 QETGKE 340
QE GK+
Sbjct: 250 QEAGKD 255
>sp|Q3URQ7|MTHSD_MOUSE Methenyltetrahydrofolate synthase domain-containing protein OS=Mus
musculus GN=Mthfsd PE=2 SV=1
Length = 372
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 162/248 (65%), Gaps = 4/248 (1%)
Query: 96 KWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSP 155
K IR+RIWD ME +IA PRPVHHRIPNF GA+ AA +L L+ F VA +KVNPD+P
Sbjct: 9 KQSIRERIWDYMESHDIADFPRPVHHRIPNFKGAAQAAGHLPHLQAFHVARTIKVNPDAP 68
Query: 156 QKQVRLLTLSGGKKLLTPQPRLRTGFFSVLDSSMLSPSTINEAC-TSVGVAKYGKQIGLD 214
Q+ R L L K LL P PRLRTG F+ + + I C TS GV + +GLD
Sbjct: 69 QRNARFLVLESKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNFSVPVGLD 128
Query: 215 EIIKVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVD 274
+ VDL+V+GSVAV+ K G R+GKGEG+A+LEY M+ MGA+ TPVVT VHD Q+V
Sbjct: 129 SSVLVDLVVVGSVAVSEK-GWRIGKGEGYADLEYAMMVSMGAVHKGTPVVTIVHDCQVV- 186
Query: 275 DIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRILRELKGRIE 334
DIP + HD+ VD I TPT+VI T PKP GI W K+S E L +I +LR L+ R E
Sbjct: 187 DIPEALVEDHDLTVDYILTPTRVITTGCARPKPTGIMWSKVSCEMLTKIPVLRNLRER-E 245
Query: 335 QETGKEQT 342
++ GK+ T
Sbjct: 246 KQAGKDVT 253
>sp|Q52L34|MTHSD_XENLA Methenyltetrahydrofolate synthase domain-containing protein
OS=Xenopus laevis GN=mthfsd PE=2 SV=1
Length = 415
Score = 195 bits (495), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 125/257 (48%), Positives = 164/257 (63%), Gaps = 4/257 (1%)
Query: 85 ESGAEDDPKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRV 144
E G DP KW IR+++WD +E N+A PRPVHHRIPNF + A +N+ LE FR
Sbjct: 2 EPGIRVDPGCSKWDIRQKVWDYIENNNLADFPRPVHHRIPNFKESHQACQNIIDLEVFRR 61
Query: 145 AGCVKVNPDSPQKQVRLLTLSGGKKLLTPQPRLRTGFFSVLDSSMLSPSTINEAC-TSVG 203
VKV+PD P + VRL L K LL P PRLRTG F+ + + + C TS G
Sbjct: 62 TWEVKVDPDKPLEGVRLAALQARKTLLVPTPRLRTGLFNKITPPPGANKEVLRICSTSQG 121
Query: 204 VAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPV 263
V Y +GLD ++VDL+V+GSVAV+ + G R+GKGEGFA++EY M+ MGA+ + T V
Sbjct: 122 VKDYSVPMGLDAKVQVDLVVVGSVAVSVQ-GWRIGKGEGFADMEYAMMVSMGAVTEHTVV 180
Query: 264 VTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQI 323
VT VHD Q+V DIP E L HD+ VD I TPT++I T+ KPQGI W ++ E +G+I
Sbjct: 181 VTVVHDCQVV-DIPEELLEDHDLTVDFILTPTRIIKTDCKRAKPQGIIWSMITREMMGKI 239
Query: 324 RILRELKGRIEQETGKE 340
ILR L+ R E+ GK+
Sbjct: 240 PILRNLQDR-ERRAGKD 255
>sp|P0AC28|YGFA_ECOLI Uncharacterized protein YgfA OS=Escherichia coli (strain K12)
GN=ygfA PE=1 SV=1
Length = 182
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 218 KVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIP 277
++D+++ VA + + G RLG G GF + ++ T V HD QLV+ +P
Sbjct: 109 RLDVLITPLVAFD-EYGQRLGMGGGFYDRTLQNWQHY-----KTQPVGYAHDCQLVEKLP 162
Query: 278 VEKLLIHDVPVDIICTPTQV 297
VE+ D+P+ + TP++V
Sbjct: 163 VEEW---DIPLPAVVTPSKV 179
>sp|P0AC29|YGFA_ECO57 Uncharacterized protein YgfA OS=Escherichia coli O157:H7 GN=ygfA
PE=3 SV=1
Length = 182
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 218 KVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIP 277
++D+++ VA + + G RLG G GF + ++ T V HD QLV+ +P
Sbjct: 109 RLDVLITPLVAFD-EYGQRLGMGGGFYDRTLQNWQHY-----KTQPVGYAHDCQLVEKLP 162
Query: 278 VEKLLIHDVPVDIICTPTQV 297
VE+ D+P+ + TP++V
Sbjct: 163 VEEW---DIPLPAVVTPSKV 179
>sp|P40099|FTHC_YEAST 5-formyltetrahydrofolate cyclo-ligase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FAU1 PE=1 SV=1
Length = 211
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 219 VDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDY-QLVDDIP 277
+D++++ VA + KTGAR+G G G+ + + RY + P++ + Q+ IP
Sbjct: 132 LDVVLVPGVAFDIKTGARMGHGAGYYDDFFQ--RYKILHEGQKPLLVGLCLMEQVASPIP 189
Query: 278 VEKLLIHDVPVD-IIC 292
+EK HD +D I+C
Sbjct: 190 LEK---HDYSMDCIVC 202
>sp|P13603|ADH1_TRIRP Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1
Length = 380
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 33/115 (28%)
Query: 117 RPVHHRIPNFVGASVAAKNLTGLEEFRV--AGCV-KVNPDSPQKQVRLLT------LSGG 167
+PVHH FVG S E+ V AGCV K+NPD+P +V +L+ L
Sbjct: 139 QPVHH----FVGTST-------FSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGAT 187
Query: 168 KKLLTPQPRLRTGFFSVLDSSMLSPSTINEACTSVGVAKYGKQIGLDEIIKVDLI 222
+ P+P F + + A+ + G II VDL+
Sbjct: 188 VNVAKPKPGSSVAIFGL-------------GAVGLAAAEGARMSGASRIIGVDLV 229
>sp|Q91ZE0|TMLH_MOUSE Trimethyllysine dioxygenase, mitochondrial OS=Mus musculus GN=Tmlhe
PE=2 SV=2
Length = 421
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 279 EKLLIHDVPVDIICTPTQVIFTNTT-IPKPQGIYWDKLSPEKLGQIRILRELKGRIEQET 337
++ +I+ VP D++ T TT + +P+ W KL P K+ I R L GR E T
Sbjct: 337 DRAVINTVPYDVVHRWYTAHRTLTTELRRPENELWVKLKPGKVLFIDNWRVLHGR-ESFT 395
Query: 338 GKEQTCG 344
G Q CG
Sbjct: 396 GYRQLCG 402
>sp|Q91ZW6|TMLH_RAT Trimethyllysine dioxygenase, mitochondrial OS=Rattus norvegicus
GN=Tmlhe PE=1 SV=2
Length = 421
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 279 EKLLIHDVPVDIICTPTQVIFTNTT-IPKPQGIYWDKLSPEKLGQIRILRELKGRIEQET 337
++ +I+ VP D++ T TT + +P+ W KL P K+ I R L GR E T
Sbjct: 337 DRAVINTVPYDVVRRWYAAHRTLTTELRRPENELWVKLKPGKVLFIDNWRVLHGR-ESFT 395
Query: 338 GKEQTCG 344
G Q CG
Sbjct: 396 GYRQLCG 402
>sp|Q0VC74|TMLH_BOVIN Trimethyllysine dioxygenase, mitochondrial OS=Bos taurus GN=TMLHE
PE=2 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 279 EKLLIHDVPVDIICTPTQVIFTNT-TIPKPQGIYWDKLSPEKLGQIRILRELKGRIEQET 337
++ +I+ VP D++ T T + +P+ +W KL P K+ I R L GR E T
Sbjct: 337 DRAVINTVPYDVVHRWYTAHRTLTRELRRPENEFWVKLKPGKVLFIDNWRVLHGR-ESFT 395
Query: 338 GKEQTCG 344
G Q CG
Sbjct: 396 GYRQLCG 402
>sp|Q3YRN4|SYFB_EHRCJ Phenylalanine--tRNA ligase beta subunit OS=Ehrlichia canis (strain
Jake) GN=pheT PE=3 SV=1
Length = 785
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 139 LEEFRVAGCVKVNPDSPQKQVRLLTLSGGKKLL---TPQPRLRTGFFSVL---DSSMLSP 192
L+ F +A ++VNP ++++ +S GK++L ++ G SVL S M +
Sbjct: 41 LKTFVIAEVLEVNPHHSANKLKICKVSDGKQILQVVCGASNVKVGMKSVLACVGSIMPTD 100
Query: 193 STINEACTSVGVAKYGKQIGLDEIIKVD 220
+I E GV YG DE+ VD
Sbjct: 101 QSIIEVVKLRGVESYGMLCSNDELGIVD 128
>sp|Q5F4B3|TMLH_CHICK Trimethyllysine dioxygenase, mitochondrial OS=Gallus gallus
GN=TMLHE PE=2 SV=1
Length = 418
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 279 EKLLIHDVPVDIICTPTQVIFTNTT-IPKPQGIYWDKLSPEKLGQIRILRELKGRIEQET 337
++ +I+ VP D++ T TT + +P+ W KL P K I R L GR E T
Sbjct: 334 DRAVINTVPYDVVNRWYTAHRTLTTELRRPENELWVKLKPGKALFIDNWRVLHGR-EAFT 392
Query: 338 GKEQTCG 344
G Q CG
Sbjct: 393 GYRQLCG 399
>sp|Q86SR1|GLT10_HUMAN Polypeptide N-acetylgalactosaminyltransferase 10 OS=Homo sapiens
GN=GALNT10 PE=1 SV=2
Length = 603
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 93 KSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGL--EEFRVAGCVKV 150
KS+KW + K WDL + + P I N VG + A G R+ GCV+
Sbjct: 433 KSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRN-VGTGLCADTKHGALGSPLRLEGCVRG 491
Query: 151 NPDSPQKQVRLLTLSGGKKLLTPQPRLRTGFFSVLDSSMLSPSTINEACTSVG--VAKYG 208
++ +++ T + + + P+ T F S SP T+ + + G + KY
Sbjct: 492 RGEAAWNNMQVFTFTWREDIRPGDPQ-HTKKFCFDAISHTSPVTLYDCHSMKGNQLWKYR 550
Query: 209 K 209
K
Sbjct: 551 K 551
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,101,188
Number of Sequences: 539616
Number of extensions: 5994743
Number of successful extensions: 14825
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 14805
Number of HSP's gapped (non-prelim): 19
length of query: 357
length of database: 191,569,459
effective HSP length: 119
effective length of query: 238
effective length of database: 127,355,155
effective search space: 30310526890
effective search space used: 30310526890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)