Query 018338
Match_columns 357
No_of_seqs 325 out of 1553
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4410 5-formyltetrahydrofola 100.0 1E-66 2.2E-71 492.5 16.9 268 86-355 23-294 (396)
2 PF01812 5-FTHF_cyc-lig: 5-for 100.0 8.2E-38 1.8E-42 282.3 14.1 174 96-294 1-186 (186)
3 COG0212 5-formyltetrahydrofola 100.0 5.6E-37 1.2E-41 280.3 17.5 180 93-300 2-190 (191)
4 TIGR02727 MTHFS_bact 5,10-meth 100.0 6E-37 1.3E-41 276.7 16.3 171 96-294 1-181 (181)
5 PLN02812 5-formyltetrahydrofol 100.0 6E-37 1.3E-41 283.7 15.3 190 92-298 3-211 (211)
6 PRK10333 5-formyltetrahydrofol 100.0 1.7E-36 3.7E-41 274.8 15.0 156 127-300 16-182 (182)
7 KOG3093 5-formyltetrahydrofola 100.0 2E-32 4.2E-37 246.2 10.3 182 92-295 4-200 (200)
8 PF01008 IF-2B: Initiation fac 63.4 40 0.00087 32.2 8.5 142 91-275 71-225 (282)
9 cd01740 GATase1_FGAR_AT Type 1 46.7 15 0.00032 34.8 2.4 54 217-275 42-97 (238)
10 PF06059 DUF930: Domain of Unk 36.5 16 0.00034 30.7 0.8 48 219-280 46-93 (101)
11 PF15605 Toxin_52: Putative to 35.4 27 0.00059 29.5 2.0 35 302-337 36-70 (103)
12 PRK01175 phosphoribosylformylg 33.7 19 0.00041 34.9 0.9 54 216-274 46-103 (261)
13 TIGR00524 eIF-2B_rel eIF-2B al 29.7 1.4E+02 0.003 29.6 6.2 23 218-241 197-219 (303)
14 TIGR00511 ribulose_e2b2 ribose 29.7 97 0.0021 30.6 5.2 95 129-243 102-207 (301)
15 PF04223 CitF: Citrate lyase, 29.3 30 0.00065 36.2 1.6 108 217-348 320-447 (466)
16 COG3051 CitF Citrate lyase, al 25.7 2.5E+02 0.0054 29.3 7.3 108 216-345 364-489 (513)
17 PRK13146 hisH imidazole glycer 24.3 11 0.00024 34.9 -2.4 55 216-276 39-93 (209)
No 1
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-66 Score=492.55 Aligned_cols=268 Identities=55% Similarity=0.848 Sum_probs=252.7
Q ss_pred cCCCC-ChhhHHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCCCHHHHHHHH
Q 018338 86 SGAED-DPKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQKQVRLLTL 164 (357)
Q Consensus 86 ~~~~~-~~~~~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~~~pl~~~aL 164 (357)
+++++ ++..+|+.||+++|..|++.+++.+|+|+|+|||||+|+..+|+.+.++.+|+.|+.|+|++|.+++.++..+|
T Consensus 23 ~~s~~qd~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnpD~pl~~~r~L~L 102 (396)
T KOG4410|consen 23 VSSTTQDIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNPDRPLHEFRELAL 102 (396)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCCCchHHHHHHHHh
Confidence 34443 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCEEEEeeecCCCCcEEeccCCCCCCCCccccc-ccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCcc
Q 018338 165 SGGKKLLTPQPRLRTGFFSVLDSSMLSPSTINEAC-TSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGF 243 (357)
Q Consensus 165 ~~GK~V~vP~~~l~~~~f~i~~p~~L~~ggI~Ep~-t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgGY 243 (357)
...|.||+|.+++++++|..+++.......|.+.+ ++.|+.+|+.++++++..++|||||++||+++ .|+|||+|.||
T Consensus 103 ~~~Ksll~PspRlrtglf~kv~~~~~ate~i~~~c~tsqgv~ky~~~IGLDs~lkvDlvViGSVavs~-~G~RiGkGeGf 181 (396)
T KOG4410|consen 103 LADKSLLLPSPRLRTGLFLKVDVLADATEEIKKECLTSQGVQKYRSEIGLDSGLKVDLVVIGSVAVSR-EGYRIGKGEGF 181 (396)
T ss_pred hcccceecCCchhhcceeeeeccCCCCcHHHHHHHHhhhhHHHhCcccccccCceEEEEEEeeEEecc-cceeeccCCch
Confidence 99999999999999999988887655555566554 89999999999999999999999999999996 99999999999
Q ss_pred cchhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeCCeEEEecCCCCCCCCcccCCCChHHHhcC
Q 018338 244 AELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQI 323 (357)
Q Consensus 244 YDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp~~vi~~~~~~~~p~GI~w~~l~~~~l~~i 323 (357)
.|++|+||++||.++++|++|++|||||+||+||.|.|..||+|||+|+||++||++.++.|+|.||+|+.||+|+|+.|
T Consensus 182 AdLeygmli~mGAi~~~TpvVTiVHDcQvVD~iP~el~~~hD~pVDiI~TPTrvI~t~~~~pkP~GiyW~klS~e~l~~i 261 (396)
T KOG4410|consen 182 ADLEYGMLIEMGAITPKTPVVTIVHDCQVVDSIPPELFQKHDTPVDIIATPTRVIRTPKRLPKPNGIYWEKLSEERLKII 261 (396)
T ss_pred hhhhhHHHHHhcccCCCCceEEEEecceeeccCCHHHHhhcCCCccEEeccceEEecCCCCCCCCccchhhcCHHHHhhh
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCccc-CCCCCCCC-ccccc
Q 018338 324 RILRELKGRIEQETGKEQT-CGPSEKLP-PMAKR 355 (357)
Q Consensus 324 p~L~~l~~~~e~~~g~~~~-~~~~~~~~-~~~~~ 355 (357)
|+|++||+| |+++|++|+ .||+++|| |.+++
T Consensus 262 piLr~Lk~R-E~kaGk~i~l~gp~~~lpqp~~eq 294 (396)
T KOG4410|consen 262 PILRQLKER-EEKAGKSISLGGPGRTLPQPDNEQ 294 (396)
T ss_pred HHHHHHHHH-HHhhCCccccCCCCccCCCCCccc
Confidence 999999999 888999999 79999999 87765
No 2
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=100.00 E-value=8.2e-38 Score=282.26 Aligned_cols=174 Identities=26% Similarity=0.320 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCCC----HHHHHHHHHCCCEEE
Q 018338 96 KWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQ----KQVRLLTLSGGKKLL 171 (357)
Q Consensus 96 K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~~----~pl~~~aL~~GK~V~ 171 (357)
|++||++++++++....... ...+..|+++|.+++.|++|++|++|++++. .+++..+++.||+||
T Consensus 1 K~~lR~~~~~~r~~l~~~~~----------~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Ev~t~~li~~~~~~gk~v~ 70 (186)
T PF01812_consen 1 KKELRKEIRARRRALSPEER----------AEASQAICERLLALPEYRKAQTIALYLPMGGEVDTRPLIERALKDGKRVY 70 (186)
T ss_dssp HHHHHHHHHHHHHTS-HHHH----------HHHHHHHHHHHHCCHHHHCTSEEEE----TTS---HHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHHHHhChhhhhhceEEEccCCCCCCCHHHHHHHHHHcCCeEe
Confidence 89999999999887654321 1568899999999999999999999999984 689999999999999
Q ss_pred EeeecCCC-----CcEEeccC-CCCCCC--CcccccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCcc
Q 018338 172 TPQPRLRT-----GFFSVLDS-SMLSPS--TINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGF 243 (357)
Q Consensus 172 vP~~~l~~-----~~f~i~~p-~~L~~g--gI~Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgGY 243 (357)
+|++.... +.|..+.. +.+..| ||+||..... .......+|||||||||||+ +|+||||||||
T Consensus 71 lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~--------~~~~~~~idlvlVP~lafd~-~G~RLG~GgGy 141 (186)
T PF01812_consen 71 LPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESP--------PPDPPEEIDLVLVPGLAFDR-NGNRLGYGGGY 141 (186)
T ss_dssp EEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCS--------EEGGGGG-SEEEEE-SEEET-TSBEE-SSSTH
T ss_pred cceecccccccceeEEeecCCcccccccccCccCCccccc--------cccccccCCEEEeCcEEECC-CCCeEecCCCH
Confidence 99998655 23444444 567766 7888864320 01122389999999999996 99999999999
Q ss_pred cchhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeC
Q 018338 244 AELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTP 294 (357)
Q Consensus 244 YDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp 294 (357)
|||+++.++. ....+.+||+||++|++++||+|+ ||++||+||||
T Consensus 142 YDR~L~~~~~---~~~~~~~igl~~~~q~~~~iP~e~---hD~~ld~iiTe 186 (186)
T PF01812_consen 142 YDRFLARLPP---GRKKPLKIGLAFDFQIVDDIPVEP---HDIPLDAIITE 186 (186)
T ss_dssp HHHHHHHHTS----SS--EEEEEE-GGGEES-----T---TS-B-SEEEET
T ss_pred HHhHHHhhhc---ccCCCeEEEEeehhheeCCCCCCc---ccccCCEEEcC
Confidence 9977776544 112688999999999999999998 99999999998
No 3
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=100.00 E-value=5.6e-37 Score=280.33 Aligned_cols=180 Identities=30% Similarity=0.337 Sum_probs=145.6
Q ss_pred hhHHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCC----CHHHHHHHHHCCC
Q 018338 93 KSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSP----QKQVRLLTLSGGK 168 (357)
Q Consensus 93 ~~~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~----~~pl~~~aL~~GK 168 (357)
.+.|++||++++..+.+.... ..+ ..+..+++++..++.+.++++|++|++++ +.+++..+|++||
T Consensus 2 ~~~K~~lR~~~~~~r~~l~~~----~~~------~~~~~i~~~~~~~~~~~~~~~ia~y~~~~~E~~~~~l~~~~l~~gk 71 (191)
T COG0212 2 MATKSALRKLLLERRIALSPE----ERH------EADQRIAKLLASLIEVKKAKTIALYVPFNGEIDTRPLIRQALRRGK 71 (191)
T ss_pred chHHHHHHHHHHHHHHcCCHH----HHH------HHHHHHHHHHHhccccccccEEEEEeccCCCCCcHHHHHHHHHcCC
Confidence 367999999999998765442 122 45667999999999999999999999998 4689999999999
Q ss_pred EEEEeeecCCCCcEEeccCC---CCCCC--CcccccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCcc
Q 018338 169 KLLTPQPRLRTGFFSVLDSS---MLSPS--TINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGF 243 (357)
Q Consensus 169 ~V~vP~~~l~~~~f~i~~p~---~L~~g--gI~Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgGY 243 (357)
+|++|++....+.|..+.+. .+..+ +|.||... +..+. . ..+||||||+||||+ +|+||||||||
T Consensus 72 ~l~lP~~~~~~~~f~~~~~~~~~~~~~~~~gi~eP~~~------~~~~~--~-~~iDlvlvP~Vafd~-~G~RLG~GgGy 141 (191)
T COG0212 72 RLLLPKLRDYKLLFLRYIPDPLQPLIKNRFGILEPGEY------GRKIP--P-PEIDLVLVPLVAFDK-QGYRLGYGGGY 141 (191)
T ss_pred EEEEeEEEcCcceeEEecCCCCcccccccccccCCCcc------CCccC--C-CcCCEEEeCceeECC-CCccccCCCch
Confidence 99999997533445566554 23322 67776532 33332 3 789999999999996 99999999999
Q ss_pred cchhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeCCeEEEe
Q 018338 244 AELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFT 300 (357)
Q Consensus 244 YDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp~~vi~~ 300 (357)
|||+++.++ ..++.+||+||+||+++.+|.|+ ||++||.||||++++.+
T Consensus 142 YDR~la~~~-----~~~~~~ig~~~~~Q~v~~lP~e~---hDv~ld~ivt~~~~~~~ 190 (191)
T COG0212 142 YDRYLANLR-----GRKTPTVGIAYDCQLVDHLPREP---HDVPLDAIVTEEGVIRC 190 (191)
T ss_pred HHHHHHhhc-----cCCCCEEEEEEeeeeeccCCCCc---ccCcccEEEeCCceEec
Confidence 998777664 24789999999999999999998 99999999999999976
No 4
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=100.00 E-value=6e-37 Score=276.74 Aligned_cols=171 Identities=28% Similarity=0.373 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCCC----HHHHHHHHHCCCEEE
Q 018338 96 KWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQ----KQVRLLTLSGGKKLL 171 (357)
Q Consensus 96 K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~~----~pl~~~aL~~GK~V~ 171 (357)
|++||+++++++.+.+.+.. ...+..++++|.+++.|+++++|++|++++. .+++..+++.||+||
T Consensus 1 K~~lR~~~~~~r~~l~~~~~----------~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~~E~~t~~li~~~~~~~k~v~ 70 (181)
T TIGR02727 1 KKELRKKLLERRKALSSEER----------KAASEAIAKRLLALIEWKNAKTIALYLPLRGEVDTRPLIEQLLKEGKRVA 70 (181)
T ss_pred CHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHHHHhChhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCCCEEE
Confidence 68999999999986654321 1468899999999999999999999999985 688999999999999
Q ss_pred EeeecCC---CCcEEeccCC-CCCCC--CcccccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCcccc
Q 018338 172 TPQPRLR---TGFFSVLDSS-MLSPS--TINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGFAE 245 (357)
Q Consensus 172 vP~~~l~---~~~f~i~~p~-~L~~g--gI~Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgGYYD 245 (357)
||++... +++|..++++ .+..+ ||+||.... . .......+|+||||+||||+ +|+||||||||||
T Consensus 71 lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~-----~---~~~~~~~idlvivP~lafD~-~G~RLG~GgGyYD 141 (181)
T TIGR02727 71 LPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDS-----T---EPVDPDEIDLIIVPGVAFDR-RGYRLGYGGGYYD 141 (181)
T ss_pred EEEEecCCCceeEEEecCCCCccccCCCCCCCCCCcc-----c---CcCCcccCCEEEeCceEEcC-CCccccCCcchHH
Confidence 9999643 2567678776 67766 888886321 0 11245678999999999996 9999999999999
Q ss_pred hhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeC
Q 018338 246 LEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTP 294 (357)
Q Consensus 246 re~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp 294 (357)
|+++ .++..+++||+||++|+++.+|+|+ ||++||+||||
T Consensus 142 R~L~------~~~~~~~~igv~~~~q~~~~lp~e~---~Di~ld~iiTe 181 (181)
T TIGR02727 142 RFLA------NLKGKTVVVGLAFDFQLVDELPREP---HDVPVDAIITE 181 (181)
T ss_pred HHHH------hcccCCCEEEEEecceeeCccCCCc---cCccCCEEeCC
Confidence 6544 3333455899999999999999998 99999999997
No 5
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=100.00 E-value=6e-37 Score=283.74 Aligned_cols=190 Identities=20% Similarity=0.244 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCCC------HHHHHHHHH
Q 018338 92 PKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQ------KQVRLLTLS 165 (357)
Q Consensus 92 ~~~~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~~------~pl~~~aL~ 165 (357)
..+.|++||+++++++++...+.. ...|..|+++|.+++.|++|++|++|++++. .+++..+++
T Consensus 3 ~~~~K~~lR~~~~~~R~~l~~~~~----------~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~ 72 (211)
T PLN02812 3 IREQKKALRKEVRRALKALSPEQR----------AQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLREVDTSKILSEILQ 72 (211)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHHHHcChhhHhcCEEEEEEECCCCCCcCHHHHHHHHHH
Confidence 456799999999999986544321 1468899999999999999999999999885 478889999
Q ss_pred CC-CEEEEeeecCC--CCcEEeccC--CCCCCC--CcccccccccccccCcc--cCCcccccccEEEEeceeEeCCCCCe
Q 018338 166 GG-KKLLTPQPRLR--TGFFSVLDS--SMLSPS--TINEACTSVGVAKYGKQ--IGLDEIIKVDLIVIGSVAVNPKTGAR 236 (357)
Q Consensus 166 ~G-K~V~vP~~~l~--~~~f~i~~p--~~L~~g--gI~Ep~t~~g~~k~G~p--v~~~~~~~IDLVVVPgVAfD~k~G~R 236 (357)
.| |+|++|++... .+.|..+++ +.+..| ||+||...... +.+ ..+.....+||||||+||||. +|+|
T Consensus 73 ~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~---~~~~~~~~~~~~~iDliiVP~lafD~-~G~R 148 (211)
T PLN02812 73 NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDAD---GNPREDVLQAPEPLDLLLLPGLAFDR-SGRR 148 (211)
T ss_pred cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccc---cccccccccCCCCCCEEEeCceEECC-CCCc
Confidence 99 99999998643 254555554 467777 89998643100 000 001135678999999999996 9999
Q ss_pred eecCCcccchhhHHHHhhc-cC-CCCCCEEEEEcCccccc--CCCCCCCCCCcccCcEEEeCCeEE
Q 018338 237 LGKGEGFAELEYGMLRYMG-AI-DDSTPVVTSVHDYQLVD--DIPVEKLLIHDVPVDIICTPTQVI 298 (357)
Q Consensus 237 LG~GgGYYDre~a~LR~lg-~~-~~~t~vVglv~d~Qvvd--~IP~E~~~~hDvpvD~IVTp~~vi 298 (357)
||||||||||+++.++... .. ...+.+||+||++|+++ +||+|+ ||++||+||||+++|
T Consensus 149 LG~GgGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~~~~iP~e~---hD~~ld~iiTe~~vi 211 (211)
T PLN02812 149 LGRGGGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILDEGSVPVDE---TDVLVDALVTPSGVI 211 (211)
T ss_pred CcCCCchHHHHHHHhhhhhccccCCCceEEEEeeheeeECCCCCCCcc---ccccCCEEEcCCcCC
Confidence 9999999997665442110 00 01355899999999999 999998 999999999999974
No 6
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=274.84 Aligned_cols=156 Identities=25% Similarity=0.296 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhCChhhhcccEEEEecCCCC----HHHHHHHHHCCCEEEEeeecCC---CCcEEeccC-CCCCCC--Ccc
Q 018338 127 VGASVAAKNLTGLEEFRVAGCVKVNPDSPQ----KQVRLLTLSGGKKLLTPQPRLR---TGFFSVLDS-SMLSPS--TIN 196 (357)
Q Consensus 127 ~gs~~ia~rL~~l~~~~~A~~I~vy~d~~~----~pl~~~aL~~GK~V~vP~~~l~---~~~f~i~~p-~~L~~g--gI~ 196 (357)
..|++|+++|.+++.|++|++|++|++++. .+++..+++.||+||+|++... .+.|..+.+ +.+..| ||+
T Consensus 16 ~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk~v~lP~v~~~~~~~m~f~~~~~~~~l~~~~~gI~ 95 (182)
T PRK10333 16 EMGQQAATRMMTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIH 95 (182)
T ss_pred HHHHHHHHHHHhChhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCCCEEEEeEEecCCCCEEEEEECCCCCccccCCCCCC
Confidence 468899999999999999999999999985 6899999999999999998642 244555544 567777 888
Q ss_pred cccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCcccchhhHHHHhhccCCC-CCCEEEEEcCcccccC
Q 018338 197 EACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDD-STPVVTSVHDYQLVDD 275 (357)
Q Consensus 197 Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgGYYDre~a~LR~lg~~~~-~t~vVglv~d~Qvvd~ 275 (357)
||.... . .......+|+||||+||||+ +|+|||||||||||+++ .++. .+.+||+||++|++++
T Consensus 96 EP~~~~-------~-~~~~~~~iDlviVP~laFD~-~G~RLG~GgGyYDR~L~------~~~~~~~~~igla~~~Q~~~~ 160 (182)
T PRK10333 96 EPKLDV-------R-DVLPLSRLDVLITPLVAFDE-YGQRLGMGGGFYDRTLQ------NWQHYKTQPVGYAHDCQLVEK 160 (182)
T ss_pred CCCccc-------c-ccCCcccCCEEEeCceEECC-CCCcccCCcchHHHHHH------HhcccCCcEEEEeeeeEEeCC
Confidence 886321 0 11235678999999999996 99999999999996554 3321 2468999999999999
Q ss_pred CCCCCCCCCcccCcEEEeCCeEEEe
Q 018338 276 IPVEKLLIHDVPVDIICTPTQVIFT 300 (357)
Q Consensus 276 IP~E~~~~hDvpvD~IVTp~~vi~~ 300 (357)
||+|+ ||++||.||||++++.+
T Consensus 161 ip~e~---hD~~ld~iiTe~~~~~~ 182 (182)
T PRK10333 161 LPVEE---WDIPLPAVVTPSKVWEW 182 (182)
T ss_pred cCCCc---ccCcCCEEEeCCeEEeC
Confidence 99998 99999999999999864
No 7
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=99.97 E-value=2e-32 Score=246.20 Aligned_cols=182 Identities=20% Similarity=0.259 Sum_probs=137.9
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCCC-----HHHHHHHHHC
Q 018338 92 PKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQ-----KQVRLLTLSG 166 (357)
Q Consensus 92 ~~~~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~~-----~pl~~~aL~~ 166 (357)
....|+.||+++.+.|.+.+.... ..+|++|+++++++++|++++.|++|++++. ..++..+++.
T Consensus 4 i~~~K~~LR~~lk~~L~ald~e~i----------~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~ 73 (200)
T KOG3093|consen 4 ISATKRLLRRQLKRSLGALDAEII----------ARQSEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQD 73 (200)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHH----------HHHHHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhc
Confidence 456799999999999987655421 1589999999999999999999999999984 6899999999
Q ss_pred CCEEEEeeecCC--CCc-EEeccCCCCC---CC--CcccccccccccccCcccC-CcccccccEEEEeceeEeCCCCCee
Q 018338 167 GKKLLTPQPRLR--TGF-FSVLDSSMLS---PS--TINEACTSVGVAKYGKQIG-LDEIIKVDLIVIGSVAVNPKTGARL 237 (357)
Q Consensus 167 GK~V~vP~~~l~--~~~-f~i~~p~~L~---~g--gI~Ep~t~~g~~k~G~pv~-~~~~~~IDLVVVPgVAfD~k~G~RL 237 (357)
||.||+|++... .++ ..+-+++.+. .+ +|++|.... .... ......+|||||||||||+ .|.||
T Consensus 74 gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~~------~re~~~~t~~~lDLiivPGvAFd~-~g~Rl 146 (200)
T KOG3093|consen 74 GKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPGG------PREDALETGHPLDLIIVPGVAFDR-KGARL 146 (200)
T ss_pred CCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCCC------chhhhccCCCcceEEEecccccch-hhhhc
Confidence 999999999532 222 2333443332 11 444443210 0011 1123369999999999997 99999
Q ss_pred ecCCcccchhhHHHHhhccC-CCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeCC
Q 018338 238 GKGEGFAELEYGMLRYMGAI-DDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPT 295 (357)
Q Consensus 238 G~GgGYYDre~a~LR~lg~~-~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp~ 295 (357)
|+|+||||.++. |+.... ..++.+||+|+.+|++.+||+++ ||+.+|.||||+
T Consensus 147 GhGkGYYD~flk--ry~~~~~~~kp~~vgL~l~EQI~~~IPv~~---~Dv~lD~vvt~~ 200 (200)
T KOG3093|consen 147 GHGKGYYDDFLK--RYQIHAPEQKPLLVGLCLKEQILSEIPVEE---HDVKLDAVVTED 200 (200)
T ss_pred cCCcchHHHHHH--HHHHhccccCchhhhhhhhHhhcccCCCCc---cceeeeEeecCC
Confidence 999999997665 333221 23678899999999999999998 999999999985
No 8
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=63.44 E-value=40 Score=32.20 Aligned_cols=142 Identities=19% Similarity=0.228 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCCC-HHHHHHHHHCCCE
Q 018338 91 DPKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQ-KQVRLLTLSGGKK 169 (357)
Q Consensus 91 ~~~~~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~~-~pl~~~aL~~GK~ 169 (357)
+....|+.+.+.+-+.+++.. ...+.|+++..++ .++..+|..|--..+ ..++..|.+.||.
T Consensus 71 ~~~~~~~~l~~~i~~~~~e~~---------------~~~~~I~~~~~~~--I~~~~~ILT~~~S~~v~~~l~~a~~~~~~ 133 (282)
T PF01008_consen 71 DFEEAKQSLLEAIDEFLDEIE---------------QAREKIADHASEL--INDGDTILTHGYSSTVERFLLSAKKKGKK 133 (282)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHCC--C-TTEEEEEES--SHHHHHHHHHHHTTEE
T ss_pred chHHHHHHHHHHHHHHHhHHH---------------HHHHHHHHHHHHh--ccCCeEEEEeCCchHHHHHHHHHHHcCCe
Confidence 456678888888887776521 3466788887765 567788888866554 5556668887764
Q ss_pred --EEEeeecCC-CCc-EEeccCCCCCCCCcccccccccccccCcccCC--c-----cccc-ccEEEEeceeEeCCCCCee
Q 018338 170 --LLTPQPRLR-TGF-FSVLDSSMLSPSTINEACTSVGVAKYGKQIGL--D-----EIIK-VDLIVIGSVAVNPKTGARL 237 (357)
Q Consensus 170 --V~vP~~~l~-~~~-f~i~~p~~L~~ggI~Ep~t~~g~~k~G~pv~~--~-----~~~~-IDLVVVPgVAfD~k~G~RL 237 (357)
|+++-.+.. .|. + . ..|. +.|.++.+ + -+.. +|.||+|+=++-. +|.=+
T Consensus 134 ~~V~v~es~P~~eG~~~-a---~~L~--------------~~gi~v~~i~d~~~~~~m~~~vd~VliGad~v~~-nG~v~ 194 (282)
T PF01008_consen 134 FRVIVLESRPYNEGRLM-A---KELA--------------EAGIPVTLIPDSAVGYVMPRDVDKVLIGADAVLA-NGGVV 194 (282)
T ss_dssp EEEEEE--TTTTHHHTH-H---HHHH--------------HTT-EEEEE-GGGHHHHHHCTESEEEEE-SEEET-TS-EE
T ss_pred EEEEEccCCcchhhhhH-H---HHhh--------------hcceeEEEEechHHHHHHHHhCCeeEEeeeEEec-CCCEe
Confidence 555543321 110 0 0 0111 11332221 1 1356 9999999999996 99877
Q ss_pred ecCCcccchhhHHHHhhccCCCCCCEEEEEcCcccccC
Q 018338 238 GKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDD 275 (357)
Q Consensus 238 G~GgGYYDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~ 275 (357)
.+-|.|.= |++- ... +.|++.+|-.+-+.+.
T Consensus 195 nk~Gt~~~---a~~A--k~~--~vPv~v~~~~~K~~~~ 225 (282)
T PF01008_consen 195 NKVGTLQL---ALAA--KEF--NVPVYVLAESYKFSPR 225 (282)
T ss_dssp EETTHHHH---HHHH--HHT--T-EEEEE--GGGBETT
T ss_pred ehhhHHHH---HHHH--Hhh--CCCEEEEccccccccc
Confidence 77776642 2221 111 4566666655544433
No 9
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=46.71 E-value=15 Score=34.78 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=36.0
Q ss_pred ccccEEEEeceeEeCCCCCeeecCCcccch--hhHHHHhhccCCCCCCEEEEEcCcccccC
Q 018338 217 IKVDLIVIGSVAVNPKTGARLGKGEGFAEL--EYGMLRYMGAIDDSTPVVTSVHDYQLVDD 275 (357)
Q Consensus 217 ~~IDLVVVPgVAfD~k~G~RLG~GgGYYDr--e~a~LR~lg~~~~~t~vVglv~d~Qvvd~ 275 (357)
...|.||+||- |. .|..++-|..+... ....++++- ....+++|+|+-+|++-+
T Consensus 42 ~~~d~liipGG-~~--~~d~l~~~~~~~~~~~~~~~l~~~~--~~g~pvlGIC~G~QlL~~ 97 (238)
T cd01740 42 DDYDGVVLPGG-FS--YGDYLRAGAIAAASPLLMEEVKEFA--ERGGLVLGICNGFQILVE 97 (238)
T ss_pred hhCCEEEECCC-CC--cccccccccccccChhHHHHHHHHH--hCCCeEEEECcHHHHHHH
Confidence 46789999986 33 35556666655443 344455443 246899999999998854
No 10
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=36.52 E-value=16 Score=30.73 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=35.9
Q ss_pred ccEEEEeceeEeCCCCCeeecCCcccchhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCC
Q 018338 219 VDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEK 280 (357)
Q Consensus 219 IDLVVVPgVAfD~k~G~RLG~GgGYYDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~ 280 (357)
=+.|-++|.||-. +|.+|++ .|-..++++...| +.|+++|-+.||.++
T Consensus 46 g~~l~a~gaAFRs--------~g~WY~l-----~F~C~vd~d~~~V-~sF~~~vG~~IP~s~ 93 (101)
T PF06059_consen 46 GNVLDAPGAAFRS--------RGKWYDL-----SFRCEVDPDATKV-TSFSFKVGDPIPRSE 93 (101)
T ss_pred CCEEecCCcEEec--------CCeEEEE-----EEEEEECCCceEE-EEEeeccCCcCCHHH
Confidence 3677888888874 4689996 5666666555544 689999999999876
No 11
>PF15605 Toxin_52: Putative toxin 52
Probab=35.40 E-value=27 Score=29.49 Aligned_cols=35 Identities=37% Similarity=0.602 Sum_probs=28.9
Q ss_pred CCCCCCCCcccCCCChHHHhcCchHHHHHHHHHHhh
Q 018338 302 TTIPKPQGIYWDKLSPEKLGQIRILRELKGRIEQET 337 (357)
Q Consensus 302 ~~~~~p~GI~w~~l~~~~l~~ip~L~~l~~~~e~~~ 337 (357)
...|||.|-+|++| .|+-..-.=|...++.+|...
T Consensus 36 ~pVpKp~GgywdHl-qEm~da~~GL~n~~~~le~~L 70 (103)
T PF15605_consen 36 NPVPKPDGGYWDHL-QEMQDAYRGLVNRKRTLEGSL 70 (103)
T ss_pred CcccCCCCCccHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 45599999999999 677888888888888888754
No 12
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=33.69 E-value=19 Score=34.93 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=34.3
Q ss_pred cccccEEEEeceeEeCCCCCeeecCCcccchhh----HHHHhhccCCCCCCEEEEEcCccccc
Q 018338 216 IIKVDLIVIGSVAVNPKTGARLGKGEGFAELEY----GMLRYMGAIDDSTPVVTSVHDYQLVD 274 (357)
Q Consensus 216 ~~~IDLVVVPgVAfD~k~G~RLG~GgGYYDre~----a~LR~lg~~~~~t~vVglv~d~Qvvd 274 (357)
..+.|.||+||. |+ .|..++.|..+-.... ..++.+ +....+++|+|.-+|++-
T Consensus 46 l~~~DgLvipGG-fs--~gD~l~~g~~~~~~l~~~l~~~Ik~f--~~~gkpVLGICnG~QlLa 103 (261)
T PRK01175 46 VSDYDCLVIPGG-FS--AGDYIRAGAIFAARLKAVLRKDIEEF--IDEGYPIIGICNGFQVLV 103 (261)
T ss_pred hhhCCEEEECCC-CC--cccccccchhhHHHHHHHHHHHHHHH--HHCCCeEEEECHHHHHHH
Confidence 356899999994 65 3666777765432211 112222 124678999999999874
No 13
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=29.70 E-value=1.4e+02 Score=29.64 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.3
Q ss_pred cccEEEEeceeEeCCCCCeeecCC
Q 018338 218 KVDLIVIGSVAVNPKTGARLGKGE 241 (357)
Q Consensus 218 ~IDLVVVPgVAfD~k~G~RLG~Gg 241 (357)
.+|.||||+=++-. +|.=+.+-|
T Consensus 197 ~vd~VlvGAd~v~~-nG~v~nk~G 219 (303)
T TIGR00524 197 EIDAVIVGADRIAR-NGDVANKIG 219 (303)
T ss_pred CCCEEEEcccEEec-CCCEeEhhh
Confidence 79999999999996 995444433
No 14
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=29.68 E-value=97 Score=30.58 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=51.1
Q ss_pred HHHHHHHHhCChhhhcccEEEEecCCCC-HHHHHHHHHCCCEE--EEeeecCC-CCcEEeccCCCCCCCCcccccccccc
Q 018338 129 ASVAAKNLTGLEEFRVAGCVKVNPDSPQ-KQVRLLTLSGGKKL--LTPQPRLR-TGFFSVLDSSMLSPSTINEACTSVGV 204 (357)
Q Consensus 129 s~~ia~rL~~l~~~~~A~~I~vy~d~~~-~pl~~~aL~~GK~V--~vP~~~l~-~~~f~i~~p~~L~~ggI~Ep~t~~g~ 204 (357)
.+.|+++..++ ..+..+|..|-...+ ..++..|.++||.+ ++.-.+.. .|. .--..|
T Consensus 102 ~~~I~~~a~~~--i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~---~~a~~L-------------- 162 (301)
T TIGR00511 102 QERIGEIGAKR--IRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGH---ITAKEL-------------- 162 (301)
T ss_pred HHHHHHHHHHH--cCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHH---HHHHHH--------------
Confidence 44555555433 345678998876665 45666777787743 43322211 110 000011
Q ss_pred cccCcccCCc-------ccccccEEEEeceeEeCCCCCeeecCCcc
Q 018338 205 AKYGKQIGLD-------EIIKVDLIVIGSVAVNPKTGARLGKGEGF 243 (357)
Q Consensus 205 ~k~G~pv~~~-------~~~~IDLVVVPgVAfD~k~G~RLG~GgGY 243 (357)
.+.|+++.+. -+.++|.||||+=++-. +|.=+.+-|-|
T Consensus 163 ~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~-nG~v~nkiGT~ 207 (301)
T TIGR00511 163 RDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITA-NGALINKIGTS 207 (301)
T ss_pred HHCCCCEEEEehhHHHHHHHhCCEEEECccEEec-CCCEEEHHhHH
Confidence 1223333211 14579999999999996 99555444433
No 15
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=29.28 E-value=30 Score=36.17 Aligned_cols=108 Identities=24% Similarity=0.396 Sum_probs=0.0
Q ss_pred ccccEEEEeceeEe----------CCCCCeeecCCcccchhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcc
Q 018338 217 IKVDLIVIGSVAVN----------PKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDV 286 (357)
Q Consensus 217 ~~IDLVVVPgVAfD----------~k~G~RLG~GgGYYDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDv 286 (357)
+.+|+||.+++=+| . +|.=+|=-||.-| ...+.- ++++-..-+-..||+=- ..|
T Consensus 320 n~LD~viLgAlEvD~dFNVNV~TgS-dG~i~Ga~GGH~D------tAagAk------ltIiv~PL~rgRip~v~---d~V 383 (466)
T PF04223_consen 320 NQLDVVILGALEVDTDFNVNVLTGS-DGVIRGASGGHPD------TAAGAK------LTIIVAPLVRGRIPTVV---DKV 383 (466)
T ss_dssp GG-SEEEE--SEEETT--EE-SB-T-TS-B-CE-CTHHH------HHHHSS------EEEEE--SEETTEESEE---SS-
T ss_pred ccccEEEEeeeeeccccceeEEECC-CceEecCCCCCcc------hhhhcC------eEEEEchhhcCCCCEEe---Cce
Q ss_pred c--------CcEEEeCCeEEEecCCCCCCCCcccCCCChHHHhcCch--HHHHHHHHHHhhCCcccCCCCCC
Q 018338 287 P--------VDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRI--LRELKGRIEQETGKEQTCGPSEK 348 (357)
Q Consensus 287 p--------vD~IVTp~~vi~~~~~~~~p~GI~w~~l~~~~l~~ip~--L~~l~~~~e~~~g~~~~~~~~~~ 348 (357)
. +|.|||+.|+- +|+.++ |++..=+-..||+ +.|||++-|+.+|+.=|..-+++
T Consensus 384 ~tv~TPGetVDVlVTe~GIA-VNP~R~-------DL~e~l~~a~lp~~~IeeL~~~A~~i~G~P~~i~~~d~ 447 (466)
T PF04223_consen 384 TTVTTPGETVDVLVTERGIA-VNPRRP-------DLIERLKKAGLPLKTIEELKEKAEKITGKPDPIEFTDR 447 (466)
T ss_dssp SS-SB-GGG--EEEETTEEE-E-TT-H-------HHHHHCCCTTS-EE-HHHHHHHHHHHH-S-----EEEE
T ss_pred eEEcCCCCceeEEEecCcee-eCCCCH-------HHHHHHHhCCCCEEEHHHHHHHHHHhcCCCCCCCCCCe
No 16
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=25.75 E-value=2.5e+02 Score=29.25 Aligned_cols=108 Identities=20% Similarity=0.364 Sum_probs=61.2
Q ss_pred cccccEEEEeceeEeC---------CCCCeeecCCcccchhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCC--C---
Q 018338 216 IIKVDLIVIGSVAVNP---------KTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEK--L--- 281 (357)
Q Consensus 216 ~~~IDLVVVPgVAfD~---------k~G~RLG~GgGYYDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~--~--- 281 (357)
...+|+||.-++-+|. .+|.=-|--||.-|...+. .+. +.-..-+--.||+-- .
T Consensus 364 vdrLdvviLSALEiDt~FNVNVmTgSdGvirgAsGGHcDTA~~A--~ls----------iI~aPLvRgRIptvVd~V~tv 431 (513)
T COG3051 364 VDRLDVVILSALEIDTQFNVNVMTGSDGVIRGASGGHCDTAAAA--ALS----------IIVAPLVRGRIPTVVDNVTTV 431 (513)
T ss_pred eceeeEEEEEeeeeccccceEEEecCCceeecccCCccchhhhh--cee----------EEeehhhcCccceeeccceeE
Confidence 4678999999998884 1355568889999943221 111 111111111222110 0
Q ss_pred CCCcccCcEEEeCCeEEEecCCCCCCCCcccCCCChHHHhcCc--h--HHHHHHHHHHhhCCcccCCC
Q 018338 282 LIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIR--I--LRELKGRIEQETGKEQTCGP 345 (357)
Q Consensus 282 ~~hDvpvD~IVTp~~vi~~~~~~~~p~GI~w~~l~~~~l~~ip--~--L~~l~~~~e~~~g~~~~~~~ 345 (357)
.----.+|.+||+-||-. ++. || |++ ++|.+++ + +.+|++|-|+.+||.-|.+=
T Consensus 432 iTPG~svDvlvTd~GIav-NP~--R~-----dL~--e~l~~a~v~~~tIE~l~erA~~ltGkP~pief 489 (513)
T COG3051 432 ITPGSSVDVLVTDHGIAV-NPA--RP-----DLA--ERLSEAGVPVVTIEELQERAELLTGKPQPIEF 489 (513)
T ss_pred ecCCCceeEEEeccceee-CCC--CH-----HHH--HHHHhCCCcEEEHHHHHHHHHHhcCCCCceec
Confidence 001225899999999873 332 22 222 3444433 2 67889999999999877653
No 17
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.33 E-value=11 Score=34.92 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=31.5
Q ss_pred cccccEEEEeceeEeCCCCCeeecCCcccchhhHHHHhhccCCCCCCEEEEEcCcccccCC
Q 018338 216 IIKVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDI 276 (357)
Q Consensus 216 ~~~IDLVVVPgVAfD~k~G~RLG~GgGYYDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~I 276 (357)
....|.||+||+.... +..+.=+--|+.+ .++++.- ....+++|+|+-.|++.+.
T Consensus 39 l~~~d~lIlpG~~~~~-~~~~~l~~~~~~~---~~~~~~~--~~~~PvlGiC~G~q~l~~~ 93 (209)
T PRK13146 39 VAAADRVVLPGVGAFA-DCMRGLRAVGLGE---AVIEAVL--AAGRPFLGICVGMQLLFER 93 (209)
T ss_pred hcCCCEEEECCCCcHH-HHHHHHHHCCcHH---HHHHHHH--hCCCcEEEECHHHHHHhhc
Confidence 4578999999976432 2211111112222 2333321 2357999999999987653
Done!