Query 018338
Match_columns 357
No_of_seqs 325 out of 1553
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wkc_A HB8 TT1367 protein; str 100.0 2.5E-42 8.5E-47 312.4 14.2 176 95-311 2-183 (184)
2 1ydm_A Hypothetical protein YQ 100.0 3.8E-41 1.3E-45 304.7 14.7 177 95-301 1-186 (187)
3 1sou_A 5,10-methenyltetrahydro 100.0 1.2E-40 4.1E-45 303.5 13.0 175 95-302 2-183 (194)
4 3hy3_A 5-formyltetrahydrofolat 100.0 7.7E-40 2.6E-44 299.6 17.8 184 92-297 6-201 (203)
5 2jcb_A 5-formyltetrahydrofolat 100.0 8.8E-40 3E-44 299.3 14.4 177 92-298 9-194 (200)
6 1sbq_A H91_ORF164, 5,10-methen 100.0 6.3E-37 2.1E-41 278.4 13.9 157 94-295 26-189 (189)
7 3ecs_A Translation initiation 53.3 17 0.0006 34.8 5.6 116 92-243 86-213 (315)
8 3rrl_A Succinyl-COA:3-ketoacid 34.7 37 0.0013 31.0 4.5 68 215-294 148-219 (235)
9 1vb5_A Translation initiation 32.4 90 0.0031 28.9 6.8 28 217-246 176-203 (276)
10 3cdk_A Succinyl-COA:3-ketoacid 31.5 55 0.0019 29.8 5.0 32 216-248 149-181 (241)
11 1t9k_A Probable methylthioribo 26.6 3E+02 0.01 26.4 9.6 96 128-242 134-250 (347)
12 1k6d_A Acetate COA-transferase 23.9 50 0.0017 29.5 3.3 33 216-249 146-179 (220)
No 1
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6
Probab=100.00 E-value=2.5e-42 Score=312.37 Aligned_cols=176 Identities=20% Similarity=0.236 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCCC----HHHHHHHHHCCCEE
Q 018338 95 WKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQ----KQVRLLTLSGGKKL 170 (357)
Q Consensus 95 ~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~~----~pl~~~aL~~GK~V 170 (357)
+|++||+++|+++++.+.+ .+|.+|+++|.+++.|++|++|++|+++++ .+++. |++ |+|
T Consensus 2 ~K~~lR~~~~~~r~~l~~~-------------~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~--~~~-k~v 65 (184)
T 1wkc_A 2 TKAELRRRARAAWRRLDLK-------------ALSRAVGAALLPWLRERGFRHILLYHPLPHELNLLPLME--AYP-ARY 65 (184)
T ss_dssp CHHHHHHHHHHHHHTSCHH-------------HHHHHHHHHHHHHHHHHTCCEEECCCCCTTCCCCTTHHH--HSC-CEE
T ss_pred CHHHHHHHHHHHHHcCCHH-------------HHHHHHHHHHHhChhhhcCCEEEEECCCCCCcCHHHHHH--hhc-CCE
Confidence 5999999999999875543 168899999999999999999999999996 57887 888 999
Q ss_pred EEeeecCCCCcEEeccCCCCCCC--CcccccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCcccchhh
Q 018338 171 LTPQPRLRTGFFSVLDSSMLSPS--TINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGFAELEY 248 (357)
Q Consensus 171 ~vP~~~l~~~~f~i~~p~~L~~g--gI~Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgGYYDre~ 248 (357)
+||++....+.|..++ .|..| ||+|| ... ......+||||||+||||+ +|+|||||||||||++
T Consensus 66 ~lP~~~~~~m~f~~~~--~L~~~~~gi~EP-~~~----------~~~~~~iDlvlvP~vafD~-~G~RLG~GgGyYDR~L 131 (184)
T 1wkc_A 66 YLPKVAGKGLTVHPFG--PLAPGPFGLLEP-TTP----------PEDPRVLDLVVVPGLAFDR-EGYRLGHGQGFYDRFL 131 (184)
T ss_dssp EEEEEETTEEEEEESC--CBC-------CB-CSC----------CBCGGGCSEEEECCSEEET-TSCEECCSSCHHHHHH
T ss_pred EEeEEeCCceEEEEec--ccCCCCCCCCCC-CCc----------cCCCCCCCEEEECcEEECC-CCCEeeCCccHHHHHH
Confidence 9998632244566666 67777 88888 210 1134678999999999996 9999999999999655
Q ss_pred HHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeCCeEEEecCCCCCCCCcc
Q 018338 249 GMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIY 311 (357)
Q Consensus 249 a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp~~vi~~~~~~~~p~GI~ 311 (357)
+ .+ ++++||+||++|++++||+|+ ||++||+||||++++++++..+||+||+
T Consensus 132 ~------~~--~~~~igl~~~~Q~~~~lp~e~---hD~~ld~iiT~~~~~~~~~~~~~p~gi~ 183 (184)
T 1wkc_A 132 K------EV--RAATVGVVPQALLFPALPRDP---WDVPVDHLATEAGVEAVKRPAPGPGGLL 183 (184)
T ss_dssp H------HC--CSEEEEECCGGGEESCCCCCT---TCCCCSEEEETTEEEECCCC--------
T ss_pred H------hc--CCCEEEEEchhhccCCCCCcc---ccCccCEEEECCEEEEcCCCCCCCCCCC
Confidence 4 33 357899999999999999998 9999999999999999999999999985
No 2
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=3.8e-41 Score=304.67 Aligned_cols=177 Identities=20% Similarity=0.291 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCC----CHHHHHHHHHCCCEE
Q 018338 95 WKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSP----QKQVRLLTLSGGKKL 170 (357)
Q Consensus 95 ~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~----~~pl~~~aL~~GK~V 170 (357)
+|++||+++|+++++...+.. +.+|.+|+++|.+++.|++|++|++|++++ +.+++..++++||+|
T Consensus 1 ~K~~lR~~~~~~r~~l~~~~~----------~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~~~~~~gk~v 70 (187)
T 1ydm_A 1 MKSQLRKKTLEALSALSNEDI----------LQKTERMYKYLFSLPEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQV 70 (187)
T ss_dssp ---CHHHHHHHHHHHSCHHHH----------HHHHHHHHHHHHTSHHHHTCSEEECCCCCTTSCCCHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHCCCHHHH----------HHHHHHHHHHHHhCHHhhhCCEEEEECCCCCCCCHHHHHHHHHHCCCEE
Confidence 489999999999987655421 367889999999999999999999999887 579999999999999
Q ss_pred EEeeecC--CCCcEEeccC-CCCCCC--CcccccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCcccc
Q 018338 171 LTPQPRL--RTGFFSVLDS-SMLSPS--TINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGFAE 245 (357)
Q Consensus 171 ~vP~~~l--~~~~f~i~~p-~~L~~g--gI~Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgGYYD 245 (357)
+||++.. ..+.|..+++ +.|.+| ||+||.... ........+||||||+||||+ +|+||||||||||
T Consensus 71 ~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~--------~~~~~~~~iDlvivP~vafD~-~G~RLG~GgGyYD 141 (187)
T 1ydm_A 71 CIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEK--------TKEVNPSQIDLMIVPGVCFDV-NGFRVGFGGGYYD 141 (187)
T ss_dssp EEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--C--------CCCCCGGGCCEEECCCSEEET-TSCEECCSCCSTT
T ss_pred EEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCcc--------cccCCccCCCEEEeCCeEECC-CCCcccCCccHHH
Confidence 9999852 3355666666 457666 888886321 011235689999999999996 9999999999999
Q ss_pred hhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeCCeEEEec
Q 018338 246 LEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTN 301 (357)
Q Consensus 246 re~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp~~vi~~~ 301 (357)
| +|..+. .++||+||++|++++||+|+ ||++||+||||+++|+|.
T Consensus 142 R------~L~~~~--~~~igla~~~Q~~~~lP~e~---hD~~ld~iiTe~~~~~~~ 186 (187)
T 1ydm_A 142 R------YLSEYE--GKTVSLLLECQLFAHVPRLP---HDIPVHKLITEDRIISCF 186 (187)
T ss_dssp T------GGGTCC--SEEEEECCGGGEESCCCCCT---TCCCCSEEECSSCEEECC
T ss_pred H------HHHhCC--CCEEEEEeHHHhcCCCCCcc---ccCcCCEEEECCcEEecc
Confidence 5 555442 36899999999999999998 999999999999999874
No 3
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=100.00 E-value=1.2e-40 Score=303.46 Aligned_cols=175 Identities=21% Similarity=0.213 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCC----CHHHHHHHHHCCCEE
Q 018338 95 WKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSP----QKQVRLLTLSGGKKL 170 (357)
Q Consensus 95 ~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~----~~pl~~~aL~~GK~V 170 (357)
+|++||+++|+++++.+.+. .+.+|.+|+++|.+++.|++|++|++|++++ +.+++..+++. |+|
T Consensus 2 ~K~~lR~~~~~~r~~l~~~~----------~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~~~~~~-k~v 70 (194)
T 1sou_A 2 LKSELRKKVLHKRINLSEEE----------RRRLSEKVISNLKSLPEFKKSKKVALYCPIKGEVDLTPLFPEVLKE-KEL 70 (194)
T ss_dssp CHHHHHHHHHHHHTTSCHHH----------HHHHHHHHHHHHHHCHHHHHCCEEEECCCCSSCCCCGGGHHHHHHH-SEE
T ss_pred CHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHHHHHhChhhhcCCEEEEECCCCCCCCHHHHHHHHHHc-CCE
Confidence 59999999999998765432 1468899999999999999999999999887 47899999999 999
Q ss_pred EEeeecCCCCcEEeccC-CCCCCC--CcccccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCcccchh
Q 018338 171 LTPQPRLRTGFFSVLDS-SMLSPS--TINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGFAELE 247 (357)
Q Consensus 171 ~vP~~~l~~~~f~i~~p-~~L~~g--gI~Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgGYYDre 247 (357)
+||++....+.|..+++ +.|.+| ||+||.. . . ......+||||||+||||+ +|+|||||||||||+
T Consensus 71 ~lP~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~-~------~---~~~~~~iDlvlvP~vafD~-~G~RLG~GgGyYDR~ 139 (194)
T 1sou_A 71 ILPKVEGNEISLYRVHSPACLGVGAFGIMEPVE-G------E---RVNPEDVDFIAVPGVAFDL-EGYRLGFGKGYYDRL 139 (194)
T ss_dssp EEEEESSSSEEEEEESSSCCCEECSSSCEECCS-S------E---EECGGGCSEEEECCSCBCS-SSCBCCSCCSSHHHH
T ss_pred EEEEecCCeeEEEEECCCCccCCCCCCCCCCCc-c------c---cCCCCCCCEEEECCeEECC-CCceeccCCcHHHHH
Confidence 99998434455656665 567777 8888852 0 0 1134678999999999996 999999999999965
Q ss_pred hHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeCCeEEEecC
Q 018338 248 YGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNT 302 (357)
Q Consensus 248 ~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp~~vi~~~~ 302 (357)
++ .+. +++||+||++|++++||+|+ ||++||+||||++++++.+
T Consensus 140 L~------~~~--~~~igla~~~Q~v~~lP~e~---hDi~ld~iiTe~~~~~~~~ 183 (194)
T 1sou_A 140 LK------RVK--GLKVGVAYSFQVFERLPRDA---WDIPVDVLVTEKNVRRLRD 183 (194)
T ss_dssp HH------HCC--SEEEEECCGGGBCSCCCCCS---CCCCCSEEECSSCEEESCC
T ss_pred HH------hcC--CCEEEEEchHhccCCCCCCc---ccccCCEEEECCeEEEecC
Confidence 44 332 46899999999999999998 9999999999999998864
No 4
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=100.00 E-value=7.7e-40 Score=299.59 Aligned_cols=184 Identities=15% Similarity=0.191 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCC----CHHHHHHHHHCC
Q 018338 92 PKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSP----QKQVRLLTLSGG 167 (357)
Q Consensus 92 ~~~~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~----~~pl~~~aL~~G 167 (357)
..+.|++||++++++++....+.. ...|..|+++|.+++.|++|++|++|++++ +.+++..+++.|
T Consensus 6 ~~~~K~~LR~~~~~~R~~l~~~~~----------~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~g 75 (203)
T 3hy3_A 6 VSSAKRSLRGELKQRLRAMSAEER----------LRQSRVLSQKVIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRG 75 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHH----------HHHHHHHHHHHHTCHHHHHCSEEECCCCCTTSCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHH----------HHHHHHHHHHHHhCHhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCC
Confidence 356799999999999987654321 156889999999999999999999999998 479999999999
Q ss_pred CEEEEeeecCC--CCcEEeccC----CCCCCC--CcccccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeec
Q 018338 168 KKLLTPQPRLR--TGFFSVLDS----SMLSPS--TINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGK 239 (357)
Q Consensus 168 K~V~vP~~~l~--~~~f~i~~p----~~L~~g--gI~Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~ 239 (357)
|+|+||++... .+.|..+.+ ..|..| ||+||..... .. .......+||||||+||||+ +|+||||
T Consensus 76 k~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~~----~~--~~~~~~~~DlvlVP~vaFD~-~G~RLG~ 148 (203)
T 3hy3_A 76 KICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDV----RE--EALSTGGLDLIFMPGLGFDK-HGNRLGR 148 (203)
T ss_dssp CEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTCC----CC--BGGGTTCCSEEEECCSEECT-TCCEECS
T ss_pred CEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCccc----cc--cccCccCCCEEEeCCeEECC-CCceecC
Confidence 99999998642 344544543 246666 8888863210 00 01133579999999999996 9999999
Q ss_pred CCcccchhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeCCeE
Q 018338 240 GEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQV 297 (357)
Q Consensus 240 GgGYYDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp~~v 297 (357)
|||||||+++.++.. ....+.+||+||++|++++||+|+ ||++||+||||+|+
T Consensus 149 GgGyYDR~L~~~~~~--~~~~~~~igla~~~Q~~~~lP~e~---hDi~ld~iiTe~~~ 201 (203)
T 3hy3_A 149 GKGYYDAYLKRCLQH--QEVKPYTLALAFKEQICLQVPVNE---NDMKVDEVLYEDSS 201 (203)
T ss_dssp SSCHHHHHHHHHTTT--CSSCCEEEEECCGGGBCSCCCCC-----CCCCSEEECC---
T ss_pred CCchHHHHHHHhhhh--cCCCCeEEEEecHHhccCCCCCCc---ccccCCEEEeCCCc
Confidence 999999777654321 123577899999999999999998 99999999999986
No 5
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Probab=100.00 E-value=8.8e-40 Score=299.30 Aligned_cols=177 Identities=20% Similarity=0.278 Sum_probs=145.6
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCC----CHHHHHHHHHCC
Q 018338 92 PKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSP----QKQVRLLTLSGG 167 (357)
Q Consensus 92 ~~~~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~----~~pl~~~aL~~G 167 (357)
+.+.|++||+++++++++.+.+.. -..|..|+++|.+++.|++|++|++|++++ +.+++..+++.|
T Consensus 9 ~~~~K~~LR~~~~~~R~~ls~~~~----------~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~g 78 (200)
T 2jcb_A 9 VREEKLRLRKQIIEHMNSLSKERY----------TTLSEQIVFSLYEQKEWAEAKTIGITLSMENEVNTYPIIEKAWKEG 78 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHH----------HHHHHHHHHHHHTSHHHHHCSEEECCCCCTTSCCCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHH----------HHHHHHHHHHHHhChhhhcCCEEEEECCCCCCCCHHHHHHHHHHCC
Confidence 467899999999999887655421 146889999999999999999999999987 579999999999
Q ss_pred CEEEEeeecCC--CCcEEeccC-CCCCCC--CcccccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCc
Q 018338 168 KKLLTPQPRLR--TGFFSVLDS-SMLSPS--TINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEG 242 (357)
Q Consensus 168 K~V~vP~~~l~--~~~f~i~~p-~~L~~g--gI~Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgG 242 (357)
|+|+||++... .+.|..+++ ++|.+| ||+||.... . .......+||||||+||||+ +|+|||||||
T Consensus 79 k~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~------~--~~~~~~~iDlvlVP~vAfD~-~G~RLG~GgG 149 (200)
T 2jcb_A 79 KRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPAL------T--EEVNADEIDLQIVPGVAYTE-RGERIGYGGG 149 (200)
T ss_dssp CEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGG------C--EECCGGGCSEEECCCSEECT-TSCEECSSSC
T ss_pred CEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCcc------c--ccCCccCCCEEEECCeEECC-CCCeeccCCc
Confidence 99999998642 345666665 467766 888886311 0 01235689999999999996 9999999999
Q ss_pred ccchhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeCCeEE
Q 018338 243 FAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVI 298 (357)
Q Consensus 243 YYDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp~~vi 298 (357)
||| |+|..+. .++||+||++|++++||+|+ ||++||+||||++++
T Consensus 150 yYD------R~La~~~--~~~igla~~~Q~v~~lP~e~---hDi~ld~iiTe~~~~ 194 (200)
T 2jcb_A 150 YYD------RYLVHYK--GKTLSLAYSFQMVEHIPVEP---FDKNVEKIITEKGTM 194 (200)
T ss_dssp HHH------HHTTTCC--SEEEEECCGGGBCSCCCCCT---TCCCCSEEEETTEEE
T ss_pred hHH------HHHhhcC--CCEEEEEehhhccCCCCCCc---cCCcCCEEEECCeEE
Confidence 999 5665543 36899999999999999998 999999999999998
No 6
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Probab=100.00 E-value=6.3e-37 Score=278.44 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhh-cccEEEEecCCC----CHHHHHHHHHCCC
Q 018338 94 SWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFR-VAGCVKVNPDSP----QKQVRLLTLSGGK 168 (357)
Q Consensus 94 ~~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~-~A~~I~vy~d~~----~~pl~~~aL~~GK 168 (357)
+.|++||+++|+++++...... ...|.+|+++|.+++.|+ +|++|++|++++ +.++++.+++.||
T Consensus 26 m~K~~LR~~~~~~R~~l~~~~~----------~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk 95 (189)
T 1sbq_A 26 MDKNALRKQILQKRMALSTIEK----------SHLDQKINQKLVAFLTPKPCIKTIALYEPIKNEVTFVDFFFEFLKINQ 95 (189)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHH----------HHHHHHHHHHHHHHHTTCTTCCEEECCCCCTTSCCCCHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHCCCHHHH----------HHHHHHHHHHHHHhHHhHhhCCEEEEECCCCCCCCHHHHHHHHHHcCC
Confidence 4599999999999987654321 157889999999999999 999999999887 4689999999999
Q ss_pred -EEEEeeecC-CCCcEEeccCCCCCCCCcccccccccccccCcccCCcccccccEEEEeceeEeCCCCCeeecCCcccch
Q 018338 169 -KLLTPQPRL-RTGFFSVLDSSMLSPSTINEACTSVGVAKYGKQIGLDEIIKVDLIVIGSVAVNPKTGARLGKGEGFAEL 246 (357)
Q Consensus 169 -~V~vP~~~l-~~~~f~i~~p~~L~~ggI~Ep~t~~g~~k~G~pv~~~~~~~IDLVVVPgVAfD~k~G~RLG~GgGYYDr 246 (357)
+|+||++.. ..+.|..+++. + .....+||||||+||||+ +|+||||||||||
T Consensus 96 ~~v~lP~~~~~~~m~f~~~~~~---------~---------------~~~~~iDlvlVP~vAfD~-~G~RLG~GgGyYD- 149 (189)
T 1sbq_A 96 IRAVYPKVISDTEIIFIDQETN---------T---------------FEPNQIDCFLIPLVGFNK-DNYRLGFGKGYYD- 149 (189)
T ss_dssp CEEEEEEECSSSCEEEECTTCC---------E---------------ECGGGCCEEEEECSEECT-TCCEECCSSCHHH-
T ss_pred CeEEEeEEccCCceEEEEeCCC---------C---------------CCcccCCEEEECceEECC-CCCEeecCCchHH-
Confidence 999999853 23456566543 0 123578999999999996 9999999999999
Q ss_pred hhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCcccCcEEEeCC
Q 018338 247 EYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPT 295 (357)
Q Consensus 247 e~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvpvD~IVTp~ 295 (357)
|+|..+..++++||+||++|+++ ||+|+ ||++||+||||+
T Consensus 150 -----R~La~~~~~~~~igla~~~Q~v~-lP~e~---hDiplD~IiTe~ 189 (189)
T 1sbq_A 150 -----RYLMQLTRQQPKIGIAYSFQKGD-FLADP---WDVQLDLIINDE 189 (189)
T ss_dssp -----HHGGGCCSCCCEEEEECGGGBCC-CCCCT---TSCCCSEEEECC
T ss_pred -----HHHHhcCCCCCEEEEechHheeC-CCCCc---ccCcCCEEEcCC
Confidence 56665544578999999999999 99998 999999999985
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=53.33 E-value=17 Score=34.77 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCccCCCCCHHHHHHHHHHHhCChhhhcccEEEEecCCCC-HHHHHHHHHCCCE-
Q 018338 92 PKSWKWIIRKRIWDLMEVQNIAQNPRPVHHRIPNFVGASVAAKNLTGLEEFRVAGCVKVNPDSPQ-KQVRLLTLSGGKK- 169 (357)
Q Consensus 92 ~~~~K~~LR~~i~~~L~~~~~a~~p~p~~~rIPnf~gs~~ia~rL~~l~~~~~A~~I~vy~d~~~-~pl~~~aL~~GK~- 169 (357)
....|+.|.+.+-..+++... ....|+++..++ ..+..+|..+....+ ..++..|.+.||.
T Consensus 86 ~~~~k~~l~~~~~~~~~~~~~---------------a~~~I~~~~~~~--I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~ 148 (315)
T 3ecs_A 86 YSKCKKIMIERGELFLRRISL---------------SRNKIADLCHTF--IKDGATILTHAYSRVVLRVLEAAVAAKKRF 148 (315)
T ss_dssp ---CTTHHHHHHHHHHHHHTT---------------HHHHHHHHHGGG--CCTTEEEEECSCCHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH--cCCCCEEEEcCCcHHHHHHHHHHHHcCCeE
Confidence 344466666665444433211 345677776654 355678888766654 4556677777874
Q ss_pred -EEEeeecCC-CCc-EEeccCCCCCCCCcccccccccccccCcccCC--c-----ccccccEEEEeceeEeCCCCCeeec
Q 018338 170 -LLTPQPRLR-TGF-FSVLDSSMLSPSTINEACTSVGVAKYGKQIGL--D-----EIIKVDLIVIGSVAVNPKTGARLGK 239 (357)
Q Consensus 170 -V~vP~~~l~-~~~-f~i~~p~~L~~ggI~Ep~t~~g~~k~G~pv~~--~-----~~~~IDLVVVPgVAfD~k~G~RLG~ 239 (357)
||+.-.+.. .|. + .+ .| .+.|+|+.+ + -+..+|.||||+=++.. +|.=+.+
T Consensus 149 ~V~v~EsrP~~qG~~l-a~---~L--------------~~~gI~vtli~Dsa~~~~m~~vd~VivGAd~i~~-nG~v~nk 209 (315)
T 3ecs_A 149 SVYVTESQPDLSGKKM-AK---AL--------------CHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVE-NGGIINK 209 (315)
T ss_dssp EEEEECCTTTTHHHHH-HH---HH--------------HTTTCCEEEECGGGHHHHGGGCSEEEEECSEECT-TSCEEEE
T ss_pred EEEEecCCCcchHHHH-HH---HH--------------HHcCCCEEEEehhHHHHHHHhCCEEEECceEEec-CCCeeeh
Confidence 555433321 111 0 01 11 112333321 1 13489999999999996 9987777
Q ss_pred CCcc
Q 018338 240 GEGF 243 (357)
Q Consensus 240 GgGY 243 (357)
-|.|
T Consensus 210 iGT~ 213 (315)
T 3ecs_A 210 IGTN 213 (315)
T ss_dssp TTHH
T ss_pred hhhH
Confidence 6665
No 8
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=34.66 E-value=37 Score=30.97 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=41.6
Q ss_pred ccccccEEEEeceeEeCCCCC-eeecCCcccchhhHHHHhhccCCCCCCEEEEEcCcccccCCCCCCCCCCccc---CcE
Q 018338 215 EIIKVDLIVIGSVAVNPKTGA-RLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVP---VDI 290 (357)
Q Consensus 215 ~~~~IDLVVVPgVAfD~k~G~-RLG~GgGYYDre~a~LR~lg~~~~~t~vVglv~d~Qvvd~IP~E~~~~hDvp---vD~ 290 (357)
...++|+.||-+-..|+ .|+ .++...++|+..+++ . . -.+|.-|-...-...++.+. -.+| ||+
T Consensus 148 ~a~~~DvAli~a~~aD~-~GN~~~~~~~~~~~~~~a~--a-A-----~~vIveve~iv~~g~l~p~~---v~ipg~~VD~ 215 (235)
T 3rrl_A 148 RAITGDYGLIKAYKSDT-LGNLVFRKTARNFNPLCAM--A-A-----KICVAEVEEIVPAGELDPDE---IHLPGIYVQH 215 (235)
T ss_dssp ECCCEEEEEEECSEEET-TCCEECCGGGCTTHHHHHH--T-E-----EEEEEEESEEECTTSSCTTT---CSBCGGGCSE
T ss_pred cCCCCeEEEEEeeecCC-CceEEEecCcccccHHHHH--h-c-----CEEEEEEeeccccCccCCce---EEeChHHeEE
Confidence 45689999999999997 897 555556788864432 1 1 13344343332222454333 4566 999
Q ss_pred EEeC
Q 018338 291 ICTP 294 (357)
Q Consensus 291 IVTp 294 (357)
||--
T Consensus 216 VV~~ 219 (235)
T 3rrl_A 216 IYKG 219 (235)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9843
No 9
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=32.45 E-value=90 Score=28.90 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=23.3
Q ss_pred ccccEEEEeceeEeCCCCCeeecCCcccch
Q 018338 217 IKVDLIVIGSVAVNPKTGARLGKGEGFAEL 246 (357)
Q Consensus 217 ~~IDLVVVPgVAfD~k~G~RLG~GgGYYDr 246 (357)
..+|.||||+=++.. +|.=..+ -|=|..
T Consensus 176 ~~vd~vivGAd~i~~-nG~v~nk-iGt~~i 203 (276)
T 1vb5_A 176 REASIAIVGADMITK-DGYVVNK-AGTYLL 203 (276)
T ss_dssp TTCSEEEECCSEECT-TSCEEEE-TTHHHH
T ss_pred ccCCEEEEcccEEec-CCCEeec-hhHHHH
Confidence 579999999999996 9987777 666664
No 10
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=31.45 E-value=55 Score=29.77 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=26.6
Q ss_pred cccccEEEEeceeEeCCCCC-eeecCCcccchhh
Q 018338 216 IIKVDLIVIGSVAVNPKTGA-RLGKGEGFAELEY 248 (357)
Q Consensus 216 ~~~IDLVVVPgVAfD~k~G~-RLG~GgGYYDre~ 248 (357)
..++|+.||-+-.-|+ .|+ .+|...++|+..+
T Consensus 149 ~l~~DVAlI~a~~aD~-~Gn~~~~~~~~~~~~~~ 181 (241)
T 3cdk_A 149 GITGDVAIVKAWKADT-MGNLIFRKTARNFNPIA 181 (241)
T ss_dssp CCCEEEEEEEEEEEET-TCCEECCGGGCTTHHHH
T ss_pred CCCCcEEEEEeccCCC-CCeEEEecCchhhHHHH
Confidence 3578999999999997 998 7887888999544
No 11
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=26.65 E-value=3e+02 Score=26.41 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCChhhhcccEEEEecCCC--------C-HHHHHHHHHCCCE--EEEeeecCC-CCcEEeccCCCCCCCCc
Q 018338 128 GASVAAKNLTGLEEFRVAGCVKVNPDSP--------Q-KQVRLLTLSGGKK--LLTPQPRLR-TGFFSVLDSSMLSPSTI 195 (357)
Q Consensus 128 gs~~ia~rL~~l~~~~~A~~I~vy~d~~--------~-~pl~~~aL~~GK~--V~vP~~~l~-~~~f~i~~p~~L~~ggI 195 (357)
..+.|+++-.++. ++-.+|..+.... + ..++..|.+.||. ||+.-.+.. .|. .+.-.+|
T Consensus 134 ~~~~I~~~g~~~I--~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~gk~~~V~v~EtRP~~qG~--rlta~eL----- 204 (347)
T 1t9k_A 134 VNKAIGKNGAQLI--KDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGA--RLTAWEL----- 204 (347)
T ss_dssp HHHHHHHHHHTTS--CTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHH--HTHHHHH-----
T ss_pred HHHHHHHHHHHHh--CCCCEEEEecCCCccccCCccHHHHHHHHHHHCCCeEEEEEeCCCCccccH--HHHHHHH-----
Confidence 3455777666653 4567888887665 4 4567778888874 555433321 110 0000011
Q ss_pred ccccccccccccCcccCC--c-------ccccccEEEEeceeEeCCCCCeeecCCc
Q 018338 196 NEACTSVGVAKYGKQIGL--D-------EIIKVDLIVIGSVAVNPKTGARLGKGEG 242 (357)
Q Consensus 196 ~Ep~t~~g~~k~G~pv~~--~-------~~~~IDLVVVPgVAfD~k~G~RLG~GgG 242 (357)
.+.|+|+.+ + ...++|.||||+=++-. +|.=..+-|-
T Consensus 205 ---------~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~a-NG~v~NKiGT 250 (347)
T 1t9k_A 205 ---------MKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIAL-NGDTANKIGT 250 (347)
T ss_dssp ---------HTTTCEEEEECGGGHHHHHHTTCCSEEEECCSEEET-TSCEEEETTH
T ss_pred ---------HhCCCCEEEEehhHHHHHhhcCCCCEEEECccEEec-CCCEEecccH
Confidence 112333321 1 12359999999999996 9955555333
No 12
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=23.94 E-value=50 Score=29.45 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=27.4
Q ss_pred cccccEEEEeceeEeCCCCC-eeecCCcccchhhH
Q 018338 216 IIKVDLIVIGSVAVNPKTGA-RLGKGEGFAELEYG 249 (357)
Q Consensus 216 ~~~IDLVVVPgVAfD~k~G~-RLG~GgGYYDre~a 249 (357)
..++|+.||-+-.-|+ +|+ .+|...++|+..++
T Consensus 146 ~l~~DVAli~a~~aD~-~Gn~~~~~~~~~~~~~~a 179 (220)
T 1k6d_A 146 PLRADLALIRAHRCDT-LGNLTYQLSARNFNPLIA 179 (220)
T ss_dssp CCCEEEEEEEEEEEET-TCCEECCHHHHTTHHHHH
T ss_pred CCCCcEEEEEeecCCC-CceEEEecCCccccHHHH
Confidence 4578999999999997 998 78778899996543
Done!