RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 018338
         (357 letters)



>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus
           thermophilus [TaxId: 274]}
          Length = 175

 Score = 58.7 bits (141), Expect = 5e-11
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 215 EIIKVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVD 274
           +   +DL+V+  +A + + G RLG G+GF +     +R           V  V    L  
Sbjct: 99  DPRVLDLVVVPGLAFDRE-GYRLGHGQGFYDRFLKEVR--------AATVGVVPQALLFP 149

Query: 275 DIPVEKLLIHDVPVDIICTPTQVI 298
            +P +     DVPVD + T   V 
Sbjct: 150 ALPRDP---WDVPVDHLATEAGVE 170


>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase
           homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
          Length = 164

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 218 KVDLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIP 277
           ++D  +I  V  N     RLG G+G+ +      RY+  +    P +   + +Q   D  
Sbjct: 98  QIDCFLIPLVGFNKDN-YRLGFGKGYYD------RYLMQLTRQQPKIGIAYSFQKG-DFL 149

Query: 278 VEKLLIHDVPVDIICTP 294
            +     DV +D+I   
Sbjct: 150 ADP---WDVQLDLIIND 163


>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 194

 Score = 52.2 bits (124), Expect = 1e-08
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 220 DLIVIGSVAVNPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVE 279
           D I +  VA + + G RLG G+G+ +     ++           V   + +Q+ + +P +
Sbjct: 113 DFIAVPGVAFDLE-GYRLGFGKGYYDRLLKRVK--------GLKVGVAYSFQVFERLPRD 163

Query: 280 KLLIHDVPVDIICTPTQVI 298
                D+PVD++ T   V 
Sbjct: 164 A---WDIPVDVLVTEKNVR 179


>d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId:
           5386]}
          Length = 145

 Score = 26.0 bits (57), Expect = 5.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 248 YGMLRYMGAIDDSTPVVTSVHDYQLVDDIPV 278
            GMLR+M    +   V   VH+Y+   D+  
Sbjct: 54  SGMLRFMSTKGERITVAVGVHNYKRWCDVVT 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,346,383
Number of extensions: 65272
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 5
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)