Query 018339
Match_columns 357
No_of_seqs 206 out of 1824
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02856 fumarylacetoacetase 100.0 5.6E-81 1.2E-85 622.8 34.2 356 2-357 67-424 (424)
2 TIGR01266 fum_ac_acetase fumar 100.0 1.4E-79 3.1E-84 611.9 32.4 354 2-355 60-414 (415)
3 KOG2843 Fumarylacetoacetase [C 100.0 4.4E-61 9.5E-66 449.6 20.0 355 2-356 61-417 (420)
4 COG0179 MhpD 2-keto-4-pentenoa 100.0 6.4E-56 1.4E-60 421.6 20.7 216 51-356 47-266 (266)
5 TIGR02303 HpaG-C-term 4-hydrox 100.0 2.2E-51 4.7E-56 387.6 22.7 218 44-354 24-244 (245)
6 KOG1535 Predicted fumarylaceto 100.0 6.4E-47 1.4E-51 340.0 16.5 199 53-311 2-207 (217)
7 PRK15203 4-hydroxyphenylacetat 100.0 9.1E-45 2E-49 366.7 21.1 193 69-354 10-205 (429)
8 PRK10691 hypothetical protein; 100.0 2.4E-43 5.1E-48 327.9 20.2 193 69-353 24-219 (219)
9 PRK15203 4-hydroxyphenylacetat 100.0 4E-43 8.6E-48 354.8 22.1 207 56-355 215-425 (429)
10 PRK12764 hypothetical protein; 100.0 2.9E-41 6.2E-46 346.9 21.5 197 70-356 30-230 (500)
11 PF01557 FAA_hydrolase: Fumary 100.0 1.3E-40 2.8E-45 308.1 14.7 208 68-353 6-218 (218)
12 TIGR02305 HpaG-N-term 4-hydrox 100.0 8.7E-40 1.9E-44 301.0 19.9 196 69-352 8-205 (205)
13 TIGR03220 catechol_dmpE 2-oxop 99.9 7.8E-23 1.7E-27 194.3 15.9 162 103-314 79-251 (255)
14 PRK11342 mhpD 2-keto-4-penteno 99.9 2.1E-21 4.5E-26 185.2 16.3 170 105-354 85-261 (262)
15 TIGR02312 HpaH 2-oxo-hepta-3-e 99.8 4.8E-18 1E-22 162.7 15.5 173 97-314 78-262 (267)
16 COG3970 Fumarylacetoacetate (F 99.6 1.6E-14 3.5E-19 137.7 13.8 185 97-356 169-357 (379)
17 TIGR03218 catechol_dmpH 4-oxal 99.6 5.4E-14 1.2E-18 134.5 15.6 149 135-314 104-259 (263)
18 COG3971 2-keto-4-pentenoate hy 99.5 2.5E-13 5.3E-18 127.7 10.7 166 104-315 85-258 (264)
19 PF11010 DUF2848: Protein of u 98.2 3.8E-05 8.3E-10 70.2 13.2 170 72-309 12-182 (194)
20 PF09298 FAA_hydrolase_N: Fuma 97.8 1.6E-05 3.4E-10 66.5 2.7 58 2-59 50-107 (107)
21 COG3802 GguC Uncharacterized p 97.7 0.00012 2.7E-09 69.2 8.6 137 95-287 139-282 (333)
22 PRK10691 hypothetical protein; 77.7 3.3 7.1E-05 38.7 4.4 10 322-331 180-189 (219)
23 PRK06488 sulfur carrier protei 68.3 21 0.00045 26.5 6.0 15 320-334 46-60 (65)
24 TIGR03220 catechol_dmpE 2-oxop 48.2 21 0.00046 34.0 3.8 22 321-350 232-253 (255)
25 cd05790 S1_Rrp40 S1_Rrp40: Rrp 38.8 76 0.0016 25.5 5.0 15 320-334 46-60 (86)
26 PF10370 DUF2437: Domain of un 36.0 12 0.00027 26.7 0.1 16 44-59 35-50 (50)
27 cd03701 IF2_IF5B_II IF2_IF5B_I 32.9 63 0.0014 26.1 3.8 19 277-295 23-41 (95)
28 COG1096 Predicted RNA-binding 29.7 1.5E+02 0.0033 27.3 6.0 53 281-333 8-71 (188)
29 COG0776 HimA Bacterial nucleoi 27.4 48 0.001 27.2 2.2 25 322-356 35-59 (94)
30 TIGR00008 infA translation ini 24.4 97 0.0021 23.9 3.2 16 320-335 41-56 (68)
31 PRK12442 translation initiatio 21.2 1.1E+02 0.0023 24.9 3.0 16 320-335 43-58 (87)
32 KOG1379 Serine/threonine prote 20.9 38 0.00082 33.8 0.4 42 251-292 198-254 (330)
33 TIGR02312 HpaH 2-oxo-hepta-3-e 20.9 1.3E+02 0.0028 28.9 4.2 53 283-352 195-266 (267)
34 cd04487 RecJ_OBF2_like RecJ_OB 20.8 1.8E+02 0.0038 22.3 4.1 17 321-337 41-57 (73)
No 1
>PLN02856 fumarylacetoacetase
Probab=100.00 E-value=5.6e-81 Score=622.82 Aligned_cols=356 Identities=75% Similarity=1.282 Sum_probs=329.6
Q ss_pred CcCcccHHHHHhCCchHHHHHHHHHHHHHhcCchhhhhhhhhccCccccCCCceecCCeeccccccccccHHHHHHhccc
Q 018339 2 ISWQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTI 81 (357)
Q Consensus 2 ~~~~~~l~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ll~P~~~~~~~~~~~~~~H~~~~g~~ 81 (357)
+|.+++||.|+++|++.|.++|+.|+++|+.....++++..+....++|+++|+|++|+.+++|++|++|.+|+.|+|+.
T Consensus 67 ~f~~~~Ln~f~alg~~~~~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~ 146 (424)
T PLN02856 67 CFSQPTLNKFMAMGRPAWKEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTM 146 (424)
T ss_pred cccCcCHHHHHhCCHHHHHHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhh
Confidence 68999999999999999999999999999887766666555666678999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCC-CCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCCHH
Q 018339 82 FRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVN 160 (357)
Q Consensus 82 ~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~-~~~~~~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e 160 (357)
|+++.++.+|+|.+.|++|.|++||++++|++|.+|.+|..+ .+...|.|.++..+|||+||++||||+++.|++|+++
T Consensus 147 fr~~~~~l~p~~~~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~ 226 (424)
T PLN02856 147 FRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVN 226 (424)
T ss_pred ccCCccCCCcccccCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHH
Confidence 887777788999999999999999999999999999987644 3334588888999999999999999987779999999
Q ss_pred HHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCccCCccccccccCCccCCCCCCCCCCCccccccCCcceeEEE
Q 018339 161 EAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 240 (357)
Q Consensus 161 ~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l 240 (357)
+|++||+|||++||||+||+|.|++.+++|+++|+|+|++||||||.|+++++++..|.+|+..++||++++..++.|.|
T Consensus 227 ~A~d~IfGytl~ND~SARDiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l 306 (424)
T PLN02856 227 EAKDHIFGLVLMNDWSARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISL 306 (424)
T ss_pred HHHhhheEEEEeeechhhhhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEE
Confidence 99999999999999999999999998899999999999999999999999999988899999999999999999999999
Q ss_pred EEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCcccccc-CCC
Q 018339 241 EVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGF 319 (357)
Q Consensus 241 ~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~i~g~~~l~~-~~~ 319 (357)
+|+++.|++.||+++|++++++|+|+++|||+|++|++++|+|||||+||||+|+++.+.||.+|++++|..++++ +++
T Consensus 307 ~v~v~~nG~~ng~~~q~~nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l~~g~ 386 (424)
T PLN02856 307 EVAIKPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGT 386 (424)
T ss_pred EEEEeeCCcccceeEEcCCHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEeccCC
Confidence 9988765555889999999999999999999986689999999999999999999999999999999999999999 566
Q ss_pred CCcCCCCCCEEEEEEEEeCCCceeeeeeeeeeEeeCCC
Q 018339 320 TRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 357 (357)
Q Consensus 320 ~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~~~ 357 (357)
.++||+|||+|++++++..+|++||||+|+++|.|+.|
T Consensus 387 ~r~fL~dGD~V~l~g~~~~~g~~igfG~~~g~v~pa~~ 424 (424)
T PLN02856 387 RRKFLEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPALP 424 (424)
T ss_pred ccccCCCCCEEEEEEEECCCCccEeeeeeeeEEecCCC
Confidence 79999999999999999999999999999999999976
No 2
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=100.00 E-value=1.4e-79 Score=611.92 Aligned_cols=354 Identities=62% Similarity=1.137 Sum_probs=326.7
Q ss_pred CcCcccHHHHHhCCchHHHHHHHHHHHHHhcCchhhhhhhhhccCccccCCCceecCCeeccccccccccHHHHHHhccc
Q 018339 2 ISWQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTI 81 (357)
Q Consensus 2 ~~~~~~l~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ll~P~~~~~~~~~~~~~~H~~~~g~~ 81 (357)
+|.+++||+|+++|++.|.++|+.|+++++.....++++..+.....+|+++|+|++|+..++|++|+|+.+|+.+.|+.
T Consensus 60 ~f~~~~Ln~f~alg~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~v~l~lP~~i~dytDf~~~~~Ha~n~g~~ 139 (415)
T TIGR01266 60 VFDQSTLNAFMALGRPAWKEARARLQNLLSASQARLRDNAALRQRALTPQAEATMHLPAQIGDYTDFYSSIQHATNVGIM 139 (415)
T ss_pred ccCCCCHHHHHhCCHHHHHHHHHHHHHHhhcCCccccccccccccceeehhHceecCCccchhhhhhhchHHHHHHHHhh
Confidence 57899999999999999999999999999877766666655666778999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCCHHH
Q 018339 82 FRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNE 161 (357)
Q Consensus 82 ~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e~ 161 (357)
|+++.++.+|+|++.|++|+|+++|++++|++|.+|.+|..+.+...|.|.++..+|||+||++||||..+.|+++++++
T Consensus 140 fr~~~~~l~p~~~~~Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELavvIGk~~~~g~~vs~e~ 219 (415)
T TIGR01266 140 FRGKENALLPNWKHLPVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISK 219 (415)
T ss_pred ccCCCCCCCcccccCCcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceEEEEEEEEEECcCcccCCcCCHHH
Confidence 88888889999999999999999999999999999998875555556888999999999999999999877799999999
Q ss_pred HhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCccCCccccccccCCccCCCCCCCCCCCccccccCCcceeEEEE
Q 018339 162 AADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLE 241 (357)
Q Consensus 162 A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~ 241 (357)
|++||+||+++||||+||+|.|+|.++||+++|+|+|++||||||.|+++++++..+.+|+..++||+++++..+.|.|+
T Consensus 220 A~~~IfGy~l~ND~SARDiQ~wE~~plgpf~~KsF~tsigPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~ 299 (415)
T TIGR01266 220 AEEHIFGVVLMNDWSARDIQAWEYVPLGPFLAKSFGTTISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLE 299 (415)
T ss_pred HHhhheEEEEeeEcchhhhhhhhccccCccccccCCCCCcCeEeccccccccccccccccccccccccccCCCcceeEEE
Confidence 99999999999999999999999989999999999999999999999999988887888899999999998888888888
Q ss_pred EEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCcccccc-CCCC
Q 018339 242 VQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFT 320 (357)
Q Consensus 242 v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~i~g~~~l~~-~~~~ 320 (357)
+++|++.+.+.+++|++++++|+|+++|||+|+++++++|+|||||+||||+|+++.+.||.+|++++|+.++++ ++..
T Consensus 300 v~vnge~~~~~~~~q~~~~~~M~ws~~qlIah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~lE~t~~g~~~v~l~~g~~ 379 (415)
T TIGR01266 300 VSLKGEGMSEPATICRSNFKHMYWTMLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSMLELSWKGKKPIDVGQGET 379 (415)
T ss_pred EEEecCcCcccceEEcCCHHhcCcCHHHHHHHHhcCCcccCCCCEEEeCCCCCCcccCCCcEEEEEeCCeeeeecCCCCC
Confidence 888665434456999999999999999999999448999999999999999999999999999999999999988 5777
Q ss_pred CcCCCCCCEEEEEEEEeCCCceeeeeeeeeeEeeC
Q 018339 321 RKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 355 (357)
Q Consensus 321 ~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~ 355 (357)
..||++||+|++++++..+|++||||+|+++|+|+
T Consensus 380 r~fL~dGD~V~~~~~~~~~g~~igfGe~~g~i~pa 414 (415)
T TIGR01266 380 RTFLEDGDEVILRGHCQGEGYRVGFGECAGKVLPA 414 (415)
T ss_pred CCCCCCCCEEEEEEEECCCCCcEeeeeeeeEEecC
Confidence 89999999999999999999999999999999986
No 3
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-61 Score=449.62 Aligned_cols=355 Identities=60% Similarity=1.067 Sum_probs=333.6
Q ss_pred CcCcccHHHHHhCCchHHHHHHHHHHHHHhcCchhhhhhhhhccCccccCCCceecCCeeccccccccccHHHHHHhccc
Q 018339 2 ISWQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTI 81 (357)
Q Consensus 2 ~~~~~~l~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ll~P~~~~~~~~~~~~~~H~~~~g~~ 81 (357)
+|-++|||+|..++.++|..+|..++.+++.+-+.|+++..+++.+.++-++++|+.|-..++|++|+.+..|+.+.|-+
T Consensus 61 vf~q~TLN~fMgL~~~AW~eaR~~~Q~LLs~~~a~Lrdn~~Lr~~a~v~Qs~atmHLPAqIGDYTDFYSSihHATNVGIM 140 (420)
T KOG2843|consen 61 VFKQSTLNAFMGLDFEAWDEARSQTQKLLSKGCAELRDNVDLRAVAIVPQSEATMHLPAQIGDYTDFYSSIHHATNVGIM 140 (420)
T ss_pred HhhhhhHHHHhCCCHHHHHHHHHHHHHHhhcchhhhccccceeeeeeeccccceeccchhhcchhhhhhhhhhccceeEE
Confidence 46789999999999999999999999999998888999888888899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEc-CCCCCCCCCCHH
Q 018339 82 FRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVG-PGNELGKPIDVN 160 (357)
Q Consensus 82 ~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIg-k~~~~g~~i~~e 160 (357)
|+++++..-|+|.+.|+-|.+++||++.+|++|.+|-+|-.+.+...|.|.++.-+|+|.|+|+.+| +....|..|..+
T Consensus 141 FRgkeNALMPNW~hLPVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~ 220 (420)
T KOG2843|consen 141 FRGKENALMPNWRHLPVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPID 220 (420)
T ss_pred EeccccccCCccccccccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchh
Confidence 9999999999999999999999999999999999999886555555689999999999999999998 555668899999
Q ss_pred HHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCccCCccccccccCCccCCCCCCCCCCCccccccCCcceeEEE
Q 018339 161 EAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 240 (357)
Q Consensus 161 ~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l 240 (357)
+|+++|+|+++.|||||||+|.|||.|+|+|.+|||.|+++||+|..+++.+|....|++||-.+|||+..+|-+++|.|
T Consensus 221 kA~~~iFG~vLMNDWSARDIQkWEYVPLGPFlaKsfgTTvSPWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL 300 (420)
T KOG2843|consen 221 KAWKNIFGFVLMNDWSARDIQKWEYVPLGPFLAKSFGTTVSPWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINL 300 (420)
T ss_pred hhhhheeeEEEecccchhhcccceeecccchhhhhcccccccceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccC-CC
Q 018339 241 EVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLD-GF 319 (357)
Q Consensus 241 ~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~i~g~~~l~~~-~~ 319 (357)
+|.+++++.--..++.++|.+.|+|++-|.|+|.+-.+|.|+|||++.+||.+|..+-.-|..+|+.|.|.++++++ +.
T Consensus 301 ~Vslkpeg~~~~a~icKsNFKhlYWT~lQQlaHHtVnGCNLRpGDLlaSGTiSGpep~~yGSmLELsWkGtK~~~lg~g~ 380 (420)
T KOG2843|consen 301 EVSLKPEGQNEDALICKSNFKHLYWTPLQQLAHHTVNGCNLRPGDLLASGTISGPEPDSYGSMLELSWKGTKTLELGGGK 380 (420)
T ss_pred EEEeccCCccccceeecccchhhhhhHHHHhhhcccccccCCccceeccccccCCCCcchhhhhhhhhcCceeeecCCch
Confidence 99998876434578999999999999999999998899999999999999999999999999999999999999995 67
Q ss_pred CCcCCCCCCEEEEEEEEeCCCceeeeeeeeeeEeeCC
Q 018339 320 TRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 356 (357)
Q Consensus 320 ~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~~ 356 (357)
.+.||++||+|-+++.|..||+.||||.|+++|.|+.
T Consensus 381 tRKFL~DgDEVii~G~CeknG~RIGFGeC~GkVLPA~ 417 (420)
T KOG2843|consen 381 TRKFLQDGDEVIIRGHCEKNGLRIGFGECVGKVLPAH 417 (420)
T ss_pred hhhhhhcCCeEEEEeeecCCceEEecccccccccccc
Confidence 7999999999999999999999999999999999874
No 4
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.4e-56 Score=421.64 Aligned_cols=216 Identities=31% Similarity=0.404 Sum_probs=190.4
Q ss_pred CCCceecCCeeccc--cccccccHHHHHHhccccCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCC
Q 018339 51 MGKVEMLLPMEIGD--YTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSP 128 (357)
Q Consensus 51 ~~~v~ll~P~~~~~--~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~ 128 (357)
+.++++++|+.++. +.+..+|.+|++||+... ..++.|++|+|+++++++++++|.+|..
T Consensus 47 ~~~~~~~~~~~~~~ki~cvG~NY~~Ha~E~~~~~---------~~p~~P~~F~K~~~a~~~~~~~i~~P~~--------- 108 (266)
T COG0179 47 LAEVRLLAPLPPPGKIVCVGRNYADHAEEMGKDR---------DIPEEPVFFLKPPTAVIGPNDPIPLPPG--------- 108 (266)
T ss_pred ccccccccCCCCCCcEEEEechHHHHHHHhccCC---------CCCCCCeeeccCcccccCCCCceECCCC---------
Confidence 66788889887543 334455899999999741 1236789999999999999999999987
Q ss_pred CCCCCCCCceeceEEEEEEcCCCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCc--cCCcccc
Q 018339 129 PPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVT 206 (357)
Q Consensus 129 ~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~--lGP~ivt 206 (357)
+.++|||+||||||||+ ++++++++|++||+|||++||||+||+|.+++ ..+|+++|+||++ +|||+++
T Consensus 109 -----s~~~dyE~ELavvIGk~---~~~v~~e~A~d~I~GYti~nD~T~Rd~Q~~~~-~~~w~~aK~~d~~~Pigp~iv~ 179 (266)
T COG0179 109 -----SKGLDYEGELAVVIGKR---GKDVSVEDALDYIAGYTIGNDVTARDLQMEEK-GRPWTRAKGFDTFAPVGPWIVT 179 (266)
T ss_pred -----CCCcceeEEEEEEECCc---CCCCCHHHHHhhheEEeeeeecchhcchhhhh-cCCcccccccCCCCCceeEEec
Confidence 78899999999999999 99999999999999999999999999997643 3589999999996 9999999
Q ss_pred ccccCCccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCE
Q 018339 207 LDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDL 286 (357)
Q Consensus 207 ~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDv 286 (357)
.+++.+ ++++.|+++| ||+++|+++|++|+|++++||+|+ |++|||+||||
T Consensus 180 ~~e~~d--------------------~~~l~l~~~v--------NGe~~Q~g~t~~Mi~~i~~lI~~l-S~~~tL~pGDv 230 (266)
T COG0179 180 KDEISD--------------------PQNLPLSLRV--------NGEVRQRGNTSDMIFSIPELIAYL-SRFMTLEPGDV 230 (266)
T ss_pred cccCCC--------------------CccceEEEEE--------CCEEEecCcHHHcccCHHHHHHHH-hCCcccCCCCE
Confidence 988754 3568888888 999999999999999999999998 89999999999
Q ss_pred EEcCCCCCCccCCCCceEEEEecCccccccCCCCCcCCCCCCEEEEEEEEeCCCceeeeeeeeeeEeeCC
Q 018339 287 LGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 356 (357)
Q Consensus 287 I~TGTp~Gv~~~~~G~~~e~~i~g~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~~ 356 (357)
|+||||+||+ ||++||+|+++ ++ |||+|+|+|+...
T Consensus 231 I~TGTP~Gvg--------------------------~l~~GD~v~~~--ie------giG~l~n~v~~~~ 266 (266)
T COG0179 231 ILTGTPSGVG--------------------------FLKPGDVVEVE--IE------GIGELENTVVKED 266 (266)
T ss_pred EEeCCCCCcc--------------------------cCCCCCEEEEE--ec------ceeEEEEEEeeCC
Confidence 9999999974 68999999999 55 9999999999763
No 5
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=2.2e-51 Score=387.63 Aligned_cols=218 Identities=24% Similarity=0.343 Sum_probs=190.3
Q ss_pred ccCccccCCCceecCCeecccc-ccccccHHHHHHhccccCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCC
Q 018339 44 RQKSLVPMGKVEMLLPMEIGDY-TDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFA 122 (357)
Q Consensus 44 ~~~~~~~~~~v~ll~P~~~~~~-~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~ 122 (357)
..+..+++++++|++|+.+... ....+|.+|++|++.. .| +.|++|+|+++|++++|++|.+|..
T Consensus 24 ~~~~~~~~~~v~ll~P~~p~ki~~vg~Ny~~h~~e~~~~--------~p---~~P~~F~Kp~~s~~g~~~~i~~P~~--- 89 (245)
T TIGR02303 24 EDGRALPPEQVTWLPPFEPGTIFALGLNYADHASELGFS--------PP---EEPLVFLKGNNTLTGHKGVTYRPKD--- 89 (245)
T ss_pred cCCCccccccceEcCCCCCCeEEEEeCCHHHHHHHhCCC--------CC---CCCEEEEcCcceeeCCCCcEECCCC---
Confidence 3567899999999999976432 1223488999998742 22 5799999999999999999999976
Q ss_pred CCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCc--c
Q 018339 123 PSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--L 200 (357)
Q Consensus 123 ~~~~~~~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~--l 200 (357)
+..+|||+||++||||+ ++++++++|++||+|||++||||+||+|...+ .+|.++|+||++ +
T Consensus 90 -----------~~~ld~E~EL~vvigk~---~~~v~~~~A~~~I~Gytv~nD~T~Rd~q~~~~--~~~~~aK~~D~~~pl 153 (245)
T TIGR02303 90 -----------VRFMHYECELAVVVGKT---AKNVKREDAMDYVLGYTIANDYAIRDYLENYY--RPNLRVKNRDTFTPI 153 (245)
T ss_pred -----------CCceeEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEeecchHHHHhhhc--CCcccccCCCCCEee
Confidence 67899999999999999 99999999999999999999999999997543 479999999997 9
Q ss_pred CCccccccccCCccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcc
Q 018339 201 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCN 280 (357)
Q Consensus 201 GP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~t 280 (357)
|||++|++++.+ +.++.|++++ ||+++|++++++|+|++.+||+|+ |++++
T Consensus 154 Gp~i~t~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~t~~ml~~v~~Li~~l-s~~~t 204 (245)
T TIGR02303 154 GPWIVDKEDVED--------------------PMNLWLRTYV--------NGELTQEGNTSDMIFSVAELIEYL-SEFMT 204 (245)
T ss_pred CCcCCCHHHcCC--------------------ccccEEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-hcCCC
Confidence 999999888743 2458888888 999999999999999999999998 89999
Q ss_pred cCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCCCCcCCCCCCEEEEEEEEeCCCceeeeeeeeeeEee
Q 018339 281 LRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 354 (357)
Q Consensus 281 L~pGDvI~TGTp~Gv~~~~~G~~~e~~i~g~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~ 354 (357)
|+|||||+||||.|++ +|++||+|+++ |+ |+|+++|+|+.
T Consensus 205 L~pGDvIlTGTp~g~~--------------------------~l~~GD~v~~~--i~------glG~l~n~v~~ 244 (245)
T TIGR02303 205 LEPGDVILTGTPKGLS--------------------------DVKPGDVVRLE--IE------GVGALENPIVS 244 (245)
T ss_pred cCCCCEEEcCCCCCCe--------------------------EcCCCCEEEEE--Ec------CceeEEEEEEe
Confidence 9999999999998763 37999999999 55 99999999984
No 6
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=100.00 E-value=6.4e-47 Score=340.03 Aligned_cols=199 Identities=26% Similarity=0.299 Sum_probs=170.1
Q ss_pred CceecCCeeccccccccc----cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCC
Q 018339 53 KVEMLLPMEIGDYTDFFS----SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSP 128 (357)
Q Consensus 53 ~v~ll~P~~~~~~~~~~~----~~~H~~~~g~~~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~ 128 (357)
++.++.|+..+. ++.| |.+|++|++.. .+++|+||.|+.||++++|++|.+|++
T Consensus 2 ~~~~~~~~~~~~--KIVcVg~NY~dh~~E~~~~-----------~PkeP~~FlKptss~v~~g~~i~~p~~--------- 59 (217)
T KOG1535|consen 2 DVMLLRPLKWPT--KIVCVGRNYADHCKELNNP-----------VPKEPFFFLKPTSSIVGPGGPIVIPPG--------- 59 (217)
T ss_pred ccchhhhhhcCC--eEEEecccHHHHHHHhCCC-----------CCCCCeEEeecchhhcCCCCceEcCCC---------
Confidence 456677776553 3333 78888888753 247899999999999999999999987
Q ss_pred CCCCCCCCceeceEEEEEEcCCCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhc-CCCCcccccCCCc--cCCccc
Q 018339 129 PPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIV 205 (357)
Q Consensus 129 ~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~-~l~~~~aK~fdt~--lGP~iv 205 (357)
++.+|||+||++||||. |+++++.+|++||+||+++.|+||||+|...+. +++|+.||+|||| +|. ++
T Consensus 60 -----~~~lh~EvEL~vVigK~---~~~v~~~~amd~v~Gy~valDmtARd~q~~ak~~g~pw~l~K~~Dtf~Pis~-~v 130 (217)
T KOG1535|consen 60 -----SKGLHHEVELAVVIGKK---GSSVKKKDAMDYVGGYAVALDMTARDWQDEAKKKGLPWTLGKGFDTFTPISA-IV 130 (217)
T ss_pred -----cCccceeEEEEEEeccc---cccCChhhcccccccEEEEeeccchhhhhhhhhcCCCeeeccccCccCcccc-cc
Confidence 78899999999999999 999999999999999999999999999987654 4899999999997 995 55
Q ss_pred cccccCCccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCC
Q 018339 206 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGD 285 (357)
Q Consensus 206 t~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGD 285 (357)
+.+.+.+ +.++.|.|+| ||+++|+|+|++|+|++..+|+|+ |+++||+|||
T Consensus 131 pk~~v~D--------------------p~nl~L~l~V--------nG~~~Q~g~T~~mifkip~li~~i-s~~~tL~~GD 181 (217)
T KOG1535|consen 131 PKEKVPD--------------------PHNLWLWLRV--------NGETRQTGNTSLMIFKIPDLISRL-SQIMTLEPGD 181 (217)
T ss_pred cHHHCCC--------------------ccceEEEEEE--------ccEEEecCchhhheecHHHHHHHH-hhheeecCCC
Confidence 6666643 4678888888 999999999999999999999998 8999999999
Q ss_pred EEEcCCCCCCccCCCCceEEEEecCc
Q 018339 286 LLGTGTISGPEPESLGCLLELTWNGQ 311 (357)
Q Consensus 286 vI~TGTp~Gv~~~~~G~~~e~~i~g~ 311 (357)
||+||||.||+++++||.+++++.++
T Consensus 182 vILTGTP~GVg~v~~Gd~i~~ei~~l 207 (217)
T KOG1535|consen 182 VILTGTPEGVGEVKPGDVIQCELLEL 207 (217)
T ss_pred EEEecCCCccccccCCCEEEeccccc
Confidence 99999999999876555555555443
No 7
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=9.1e-45 Score=366.74 Aligned_cols=193 Identities=20% Similarity=0.205 Sum_probs=162.7
Q ss_pred cccHHHHHHhccccCC-CCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEE
Q 018339 69 FSSMHHAKNCGTIFRG-PANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVV 147 (357)
Q Consensus 69 ~~~~~H~~~~g~~~~~-~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVI 147 (357)
.+|.+|++++++.+.. +.+. .++.|++|+|+++|++++|++|.+|.. .++|||+||++||
T Consensus 10 ~Ny~~~~~~~~~~~~~~~~~~----~p~~P~~F~Kp~~al~g~~~~i~~P~~---------------~~~~~E~EL~vvI 70 (429)
T PRK15203 10 LNHRSQLDAWQEAFQQSPYKA----PPKTAVWFIKPRNTVIRCGEPIPFPQG---------------EKVLSGATVALIV 70 (429)
T ss_pred CchHHHHHhhhhhccccccCC----CCCCCEEEecCcceeeCCCCcEECCCC---------------CCceEEEEEEEEE
Confidence 4488999987653111 1111 236899999999999999999999974 3699999999999
Q ss_pred cCCCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCc--cCCccccccccCCccCCCCCCCCCCC
Q 018339 148 GPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPL 225 (357)
Q Consensus 148 gk~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~--lGP~ivt~d~l~~~~~~~~~~~~~~~ 225 (357)
||+ |+++++++|++||+||+++||+|+||+|.. .+|.++|+||+| +|||+++.+
T Consensus 71 Gk~---~~~v~~~~A~~~V~Gyti~nD~t~rd~q~~----~~~~~~K~~D~~~p~Gp~i~~~~----------------- 126 (429)
T PRK15203 71 GKT---ATKVREEDAAEYIAGYALANDVSLPEESFY----RPAIKAKCRDGFCPIGETVALSN----------------- 126 (429)
T ss_pred CCc---cCCCCHHHHhhheeEEEEEEEeechhhccc----CCcccccCCCCCcccCCeEECCC-----------------
Confidence 999 999999999999999999999999999853 379999999996 999996421
Q ss_pred ccccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCceEE
Q 018339 226 PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLE 305 (357)
Q Consensus 226 ~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e 305 (357)
+.+++|+++| ||+++|+++|++|+|+++++|+|+ |+++||+|||||+||||+|++
T Consensus 127 -------~~~l~i~~~v--------NGe~~Q~~~t~~Mi~~~~~lis~l-S~~~tL~pGDvI~TGTP~g~~--------- 181 (429)
T PRK15203 127 -------VDNLTIYTEI--------NGRPADHWNTADLQRNAAQLLSAL-SEFATLNPGDAILLGTPQARV--------- 181 (429)
T ss_pred -------ccceEEEEEE--------CCEEEecCCHHHcCCCHHHHHHHH-hCCCCcCCCCEEEcCCCCCce---------
Confidence 1458888888 999999999999999999999998 999999999999999999853
Q ss_pred EEecCccccccCCCCCcCCCCCCEEEEEEEEeCCCceeeeeeeeeeEee
Q 018339 306 LTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 354 (357)
Q Consensus 306 ~~i~g~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~ 354 (357)
+|++||+|+++ |+ |+|+|+|+|+.
T Consensus 182 -----------------~l~~GD~v~~~--i~------gig~l~n~v~~ 205 (429)
T PRK15203 182 -----------------EIQPGDRVRVL--AE------GFPPLENPVVD 205 (429)
T ss_pred -----------------ECCCCCEEEEE--Ee------CeeEEEEEEEE
Confidence 46778888777 44 77888887764
No 8
>PRK10691 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-43 Score=327.91 Aligned_cols=193 Identities=21% Similarity=0.261 Sum_probs=165.7
Q ss_pred cccHHHHHHhccccCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEc
Q 018339 69 FSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVG 148 (357)
Q Consensus 69 ~~~~~H~~~~g~~~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIg 148 (357)
.+|.+|+++++.. .| +.|++|+|+++++++++++|.+|.. +.++|||+|||||||
T Consensus 24 ~Ny~~h~~e~~~~--------~p---~~P~~F~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvig 78 (219)
T PRK10691 24 SNYAKHIKEMGSA--------TP---EEPVLFIKPETALCDLRQPLAIPKD--------------FGSVHHEVELAVLIG 78 (219)
T ss_pred cCHHHHHHHhCCC--------CC---CCCEEEECCcceeeCCCCcEECCCC--------------CCCeeEEEEEEEEEC
Confidence 4588999998753 22 5799999999999999999999986 678999999999999
Q ss_pred CCCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhcC-CCCcccccCCCc--cCCccccccccCCccCCCCCCCCCCC
Q 018339 149 PGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVP-LGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPL 225 (357)
Q Consensus 149 k~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~-l~~~~aK~fdt~--lGP~ivt~d~l~~~~~~~~~~~~~~~ 225 (357)
|+ ++++++++|++||+||+++||+|+||+|.+.+.. .+|.++|+||++ +|||+++.+...+
T Consensus 79 k~---~~~v~~~~a~~~V~gyt~~nDvt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~~~~~~~d------------- 142 (219)
T PRK10691 79 AT---LRQATEEHVRKAIAGYGVALDLTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIPVAEFTGD------------- 142 (219)
T ss_pred CC---CCCCCHHHHhhhheEEEEEEEeEhhhhhhhhccccCCccccccCCCCcCcCCcEEchhccCC-------------
Confidence 99 8999999999999999999999999999875432 468899999996 8999987543221
Q ss_pred ccccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCceEE
Q 018339 226 PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLE 305 (357)
Q Consensus 226 ~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e 305 (357)
+.++++++++ ||+++|++++++|+|++.++|+|+ |++++|+|||||+||||.|++
T Consensus 143 -------~~~l~i~l~v--------NG~~~q~g~~~~mi~~~~~lia~l-s~~~tL~aGDvI~TGTp~g~~--------- 197 (219)
T PRK10691 143 -------PQNTTLGLSV--------NGEVRQQGNTADMIHPIVPLIAYM-SRFFTLRAGDVVLTGTPEGVG--------- 197 (219)
T ss_pred -------ccccEEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-hcCCccCCCCEEEcCCCCCCE---------
Confidence 3557888887 999999999999999999999998 899999999999999998763
Q ss_pred EEecCccccccCCCCCcCCCCCCEEEEEEEEeCCCceeeeeeeeeeEe
Q 018339 306 LTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 353 (357)
Q Consensus 306 ~~i~g~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~ 353 (357)
+|++||+|+++ |+ |+ +|+++|.
T Consensus 198 -----------------~l~~GD~v~~~--i~------gl-~~~~~~~ 219 (219)
T PRK10691 198 -----------------PLQSGDELTVT--FN------GH-SLTTRVL 219 (219)
T ss_pred -----------------ECCCCCEEEEE--Ee------CE-EEEEEeC
Confidence 36888888888 45 88 8888773
No 9
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=4e-43 Score=354.82 Aligned_cols=207 Identities=21% Similarity=0.282 Sum_probs=177.8
Q ss_pred ecCCeeccc--cccccccHHHHHHhccccCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCC
Q 018339 56 MLLPMEIGD--YTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGP 133 (357)
Q Consensus 56 ll~P~~~~~--~~~~~~~~~H~~~~g~~~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~ 133 (357)
+++|+.++. +....+|.+|++|++.. .| +.|++|+|+++|+++++++|.+|..
T Consensus 215 ~~~p~~~~~ki~~vg~Ny~~h~~e~~~~--------~p---~~P~~F~K~~~s~~g~~~~i~~P~~-------------- 269 (429)
T PRK15203 215 FPTPPHPHGTLFALGLNYADHASELEFK--------PP---EEPLVFLKAPNTLTGDNQTSVRPNN-------------- 269 (429)
T ss_pred cccCCCCCCeEEEEcCCHHHHHHHhCCC--------CC---CCCEEEEcCcceeeCCCCCEECCCC--------------
Confidence 566776543 11123378899888642 22 5799999999999999999999986
Q ss_pred CCCceeceEEEEEEcCCCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCc--cCCccccccccC
Q 018339 134 SQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALE 211 (357)
Q Consensus 134 ~~~ld~E~ELavVIgk~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~--lGP~ivt~d~l~ 211 (357)
+.++|||+|||+||||+ +++++++||++||+||+++||+|+||+|...+ .+|+.+|+||++ +|||+++.+++.
T Consensus 270 ~~~ld~E~ELavVigk~---~~~v~~~ea~~~V~Gy~~~nD~t~rd~q~~~~--~~w~~~K~~d~~~plGp~~v~~d~~~ 344 (429)
T PRK15203 270 IEYMHYEAELVVVIGKQ---ARKVSEADAMDYVAGYTVCNDYAIRDYLENYY--RPNLRVKSRDGLTPILSTIVPKEAIP 344 (429)
T ss_pred CCceEEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEEeccchhhhhhhc--CCceEeccCCCCcCCCCCEeChhhcC
Confidence 67899999999999999 89999999999999999999999999996543 468999999996 999999988764
Q ss_pred CccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCC
Q 018339 212 PFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGT 291 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGT 291 (357)
+ +.++.+++++ ||+++|++++++|+|++.++|+|+ |++++|+|||+|+|||
T Consensus 345 d--------------------~~~l~i~l~v--------NG~~vq~g~t~~m~~~v~~li~~l-s~~~tL~aGDvI~TGT 395 (429)
T PRK15203 345 D--------------------PHNLTLRTFV--------NGELRQQGTTADLIFSVPFLIAYL-SEFMTLNPGDMIATGT 395 (429)
T ss_pred C--------------------ccceEEEEEE--------CCEEEEeeCHHHhccCHHHHHHHH-hcCCCcCCCCEEEeCC
Confidence 3 3568888887 999999999999999999999998 8999999999999999
Q ss_pred CCCCccCCCCceEEEEecCccccccCCCCCcCCCCCCEEEEEEEEeCCCceeeeeeeeeeEeeC
Q 018339 292 ISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 355 (357)
Q Consensus 292 p~Gv~~~~~G~~~e~~i~g~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~ 355 (357)
|.|++ +|++||+|+++ |+ |+|+++|+|+.+
T Consensus 396 p~g~~--------------------------~l~pGD~v~~~--i~------glG~l~n~v~~~ 425 (429)
T PRK15203 396 PKGLS--------------------------DVVPGDEVVVE--VE------GVGRLVNRIVSE 425 (429)
T ss_pred CCCCe--------------------------ECCCCCEEEEE--Ec------CceEEEEEEEec
Confidence 98863 37999999998 56 999999999854
No 10
>PRK12764 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=346.88 Aligned_cols=197 Identities=23% Similarity=0.311 Sum_probs=170.4
Q ss_pred ccHHHHHHhccccCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEcC
Q 018339 70 SSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGP 149 (357)
Q Consensus 70 ~~~~H~~~~g~~~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIgk 149 (357)
+|.+|+++++.. ++.|++|+|++++++++|++|.+|.+ +..+|||+||+|||||
T Consensus 30 Ny~~ha~e~~~~------------p~~P~~f~K~~~sl~~~g~~I~~p~~--------------~~~l~~E~ELavVIgr 83 (500)
T PRK12764 30 NYPSRAAQRGRT------------PAQPSYFLKPSSSLALSGGTVERPAG--------------TELLAFEGEIALVIGR 83 (500)
T ss_pred CCHHHHHHhCCC------------CCCCEEEEeccceEeCCCCeEECCCC--------------CCceeEEEEEEEEECC
Confidence 478899887631 25799999999999999999999976 5689999999999999
Q ss_pred CCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCc--cCCccccccccCCccCCCCCCCCCCCcc
Q 018339 150 GNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPY 227 (357)
Q Consensus 150 ~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~--lGP~ivt~d~l~~~~~~~~~~~~~~~~~ 227 (357)
+ ++++++++|++||+||+++||+|+||+|..++ ..|+++|+||++ +|||+++.++++.
T Consensus 84 ~---~~~v~~eea~~~I~Gyt~~nDvt~rD~~~~d~--~~~~~~K~~Dg~~plGp~iv~~~~~d~--------------- 143 (500)
T PRK12764 84 P---ARRVSPEDAWSHVAAVTAANDLGVYDLRYADK--GSNLRSKGGDGFTPIGPALISARGVDP--------------- 143 (500)
T ss_pred c---CCCCCHHHHHhhheEEEEecceeeehhhhhhc--CCcccccccCccEecCCCccCccccCc---------------
Confidence 9 89999999999999999999999999997654 256899999996 9999999888742
Q ss_pred ccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCceEEEE
Q 018339 228 LAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 307 (357)
Q Consensus 228 ~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~ 307 (357)
.+++|+++| ||+++|++++++|+|++.+||+|+ |+++||+|||||+||||.|++
T Consensus 144 ------~~l~i~~~v--------NGe~~Q~g~t~dmi~~v~~LI~~l-S~~~tL~pGDvIlTGTp~g~~----------- 197 (500)
T PRK12764 144 ------AQLRVRTWV--------NGELVQDDTTEDLLFPFAQLVADL-SQLLTLEEGDVILTGTPAGSS----------- 197 (500)
T ss_pred ------cceEEEEEE--------CCEEEEeccHHHhcCCHHHHHHHH-hcCCCcCCCCEEEeCCCCCCe-----------
Confidence 558888888 999999999999999999999998 899999999999999998763
Q ss_pred ecCccccccCCCCCcCCCCCCEEEEEEEEe--CCCceeeeeeeeeeEeeCC
Q 018339 308 WNGQKPLSLDGFTRKFLEDGDEVTFTGFCK--GNGYTVGFGTCSGKIVPST 356 (357)
Q Consensus 308 i~g~~~l~~~~~~~~~L~~GD~V~~~~~~~--~~~~~~~~G~~~~~v~~~~ 356 (357)
+|++||+|+++ |+ .+|.++ ||+|+|+|+..+
T Consensus 198 ---------------~l~pGD~v~~~--i~gi~~~~~~-~G~L~n~v~~~~ 230 (500)
T PRK12764 198 ---------------VAAPGDVVEVE--VDAPADGAPS-TGRLVTRVVEGT 230 (500)
T ss_pred ---------------ecCCCCEEEEE--EcCCccCCCC-cceEEEEEEeCC
Confidence 46888888888 44 334343 599999997653
No 11
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=100.00 E-value=1.3e-40 Score=308.11 Aligned_cols=208 Identities=31% Similarity=0.401 Sum_probs=174.6
Q ss_pred ccccHHHHHHhccc-cCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEE
Q 018339 68 FFSSMHHAKNCGTI-FRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAV 146 (357)
Q Consensus 68 ~~~~~~H~~~~g~~-~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavV 146 (357)
..+|.+|+++++.. ...+. -.++..|++|.|++++++++|++|.+|.. +..++||+||+|+
T Consensus 6 ~~n~~~~~~~~~~~~~~~p~----~~~~~~p~~~~~~~~~~~~~g~~i~~p~~--------------~~~~~~E~Ela~v 67 (218)
T PF01557_consen 6 GLNYTSHAEEAGAGDVDEPD----YGVPVEPVFFMKPPSSLVGSGAPIPLPRG--------------SRRLDYEAELAFV 67 (218)
T ss_dssp ESEBHHHHHHTTTTCSSTTS----EECECSGEEEEEEGGGEEETTSEEEECTT--------------SSSEEEEEEEEEE
T ss_pred eEchHHHHHHhCcCCCCCCc----cccccCCeEEecCCceeecCCCceecCcc--------------ccccCcceEEEEE
Confidence 45689999999854 11111 01235788999999999999999999986 6789999999999
Q ss_pred EcCCCCCCCCC-CHHHHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCc--cCCccccccccCCccCCCCCCCCC
Q 018339 147 VGPGNELGKPI-DVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQ 223 (357)
Q Consensus 147 Igk~~~~g~~i-~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~--lGP~ivt~d~l~~~~~~~~~~~~~ 223 (357)
|||+ ++++ ++++|++||+||+++||||+|++|.+.+.+++|+.+|+++++ +|||+++++++.++
T Consensus 68 ig~~---~~~~~~~~ea~~~i~g~~~~~d~~~r~~~~~~~~~~~~~~~k~~~~~~~~Gp~~v~~~~~~~~---------- 134 (218)
T PF01557_consen 68 IGRP---LRNVYTPEEALDAIAGYTPANDVTARDLQWRERPGLPWIADKSFDGSLVLGPWVVPPDELPDL---------- 134 (218)
T ss_dssp ESS----BSSTH-HHHHGGGEEEEEEEEEEEEHHHHHHHHHTHSSHHHHSSTTCEEEEEEEEEHSSHSGT----------
T ss_pred EecC---CCCCCCHHHHHHHhhEEeeecccchhhhhhhhhcccchhhccCcCcceeecccccccccccCc----------
Confidence 9998 7888 999999999999999999999999887744678889999986 99999999888642
Q ss_pred CCccccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCce
Q 018339 224 PLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCL 303 (357)
Q Consensus 224 ~~~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~ 303 (357)
.++++++++ ||+++|++++++|+|++.++|+|+ |++++|+|||+|+||||.|++.
T Consensus 135 ----------~~~~~~l~v--------nG~~~~~~~~~~~~~~~~~ll~~l-s~~~~L~aGdvI~TGt~~G~~~------ 189 (218)
T PF01557_consen 135 ----------RDLRLRLRV--------NGEVVQSGSTSDMLGDPAELLAWL-SRGLTLRAGDVILTGTPTGVGA------ 189 (218)
T ss_dssp ----------TSEEEEEEE--------TTEEEEEEEGGGBSSSHHHHHHHH-HTTS-B-TTEEEEEEESSTSEG------
T ss_pred ----------ceEEEEEEE--------CCEEEEeccchhHHhhHHHHHHHH-hCCCCCCcceEEEcCCcCCCCc------
Confidence 458888888 999999999999999999999997 8999999999999999998732
Q ss_pred EEEEecCccccccCCCCCcCCCCCCEEEEEEEE-eCCCceeeeeeeeeeEe
Q 018339 304 LELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFC-KGNGYTVGFGTCSGKIV 353 (357)
Q Consensus 304 ~e~~i~g~~~l~~~~~~~~~L~~GD~V~~~~~~-~~~~~~~~~G~~~~~v~ 353 (357)
..++.+|++||+|+++ + . |||+++|+|+
T Consensus 190 --------------~~~~~~l~~Gd~v~~~--~~~------glG~l~~~v~ 218 (218)
T PF01557_consen 190 --------------RPPPVPLQPGDRVEAE--IDE------GLGSLENTVA 218 (218)
T ss_dssp --------------SSCCEEEBTT-EEEEE--EET------TTEEEEEEEE
T ss_pred --------------ccccccCCCCcEEEEE--EEC------CEeEEEEEEC
Confidence 1357899999999999 5 5 9999999985
No 12
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=8.7e-40 Score=300.99 Aligned_cols=196 Identities=21% Similarity=0.217 Sum_probs=165.2
Q ss_pred cccHHHHHHhccccCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEc
Q 018339 69 FSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVG 148 (357)
Q Consensus 69 ~~~~~H~~~~g~~~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIg 148 (357)
.+|..|++|++..+..... ...++.|.+|+|++++++++|++|.+|.. ...++||+|||+|||
T Consensus 8 ~ny~~h~~~~~~~~~~~~~---~~~p~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~ELa~vig 70 (205)
T TIGR02305 8 LNYREQLDRLQEAFQQAPY---KAPPKTPVLYIKPRNTHNGCGQPIPLPAG--------------VEKLRSGATLALVVG 70 (205)
T ss_pred CcHHHHHHHhccccccccc---CCCCCCCEEEEcCcceEeCCCCeEECCCC--------------CCCccEEEEEEEEEC
Confidence 3578999999753211111 11236899999999999999999999875 468999999999999
Q ss_pred CCCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCc--cCCccccccccCCccCCCCCCCCCCCc
Q 018339 149 PGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLP 226 (357)
Q Consensus 149 k~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~--lGP~ivt~d~l~~~~~~~~~~~~~~~~ 226 (357)
|+ ++++++++|++||+||+++||+|+|+.+.+. .|..+|+||++ +||| ++.+++.+
T Consensus 71 r~---~~~~~~~~a~~~v~g~~~~~dit~~~~~~~~----~~~~~k~~dg~~~lGp~-v~~~~~~d-------------- 128 (205)
T TIGR02305 71 RT---ACRVREEEALDYVAGYALVNDVSLPEDSYYR----PAIKAKCRDGFCPIGPE-VPLSAIGN-------------- 128 (205)
T ss_pred CC---CCCCCHHHHHHhhheeEEeeeeehhhhhccC----cchhhcccCCccccCCc-ccHHHcCC--------------
Confidence 99 7889999999999999999999999976532 57889999996 9999 66666533
Q ss_pred cccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCceEEE
Q 018339 227 YLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLEL 306 (357)
Q Consensus 227 ~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~ 306 (357)
+.++.+++++ ||+++|++++++|+|++.+||+|+ |++++|+|||||+||||.|+
T Consensus 129 ------~~~~~~~l~v--------ng~~~~~g~~~~~~~~~~~li~~l-s~~~~L~aGdvI~TGT~~g~----------- 182 (205)
T TIGR02305 129 ------PDELTIYTYI--------NGKPAQSNNTSNLVRSAAQLISEL-SEFMTLNPGDVLLLGTPEAR----------- 182 (205)
T ss_pred ------ccccEEEEEE--------CCEEEEeeCHHHhCcCHHHHHHHH-hCCCCcCCCCEEEeCCCCCC-----------
Confidence 2557888888 999999999999999999999998 78999999999999999874
Q ss_pred EecCccccccCCCCCcCCCCCCEEEEEEEEeCCCceeeeeeeeeeE
Q 018339 307 TWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI 352 (357)
Q Consensus 307 ~i~g~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v 352 (357)
.+|++||+|+++ |+ |+|+++|+|
T Consensus 183 ---------------~~l~~Gd~v~~~--i~------glG~l~n~v 205 (205)
T TIGR02305 183 ---------------VEVGPGDRVRVE--AE------GLGELENPV 205 (205)
T ss_pred ---------------eecCCCCEEEEE--Ec------CceeEEEeC
Confidence 347899999988 56 899999986
No 13
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=99.90 E-value=7.8e-23 Score=194.33 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=119.5
Q ss_pred CCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCCHHHHh---hceeEEEEeecCchhh
Q 018339 103 RASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA---DHIFGVMLMNDWSARD 179 (357)
Q Consensus 103 ~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e~A~---~~I~Gy~l~nD~saRd 179 (357)
..+.+..+|.+|.++.. ..+++|+||+|||||+++ +++++++|++ ++|+++.-.+|.+.||
T Consensus 79 ~~~~~~~~g~~i~~~~~---------------~~~~vE~Elafvlg~~l~-~~~~t~~ev~~ai~~v~~~~El~D~r~~~ 142 (255)
T TIGR03220 79 LDGMVYNEGEPIPTDTL---------------IQPKAEGEIAFVLKKDLM-GPGVTAADVLAATECVMPCFEIVDSRIRD 142 (255)
T ss_pred eccccccCCCeeccccC---------------ccceeeeEEEEEECCCCC-CCCCCHHHHHHHHhheeeeEEEccccccc
Confidence 44555567888877653 379999999999999976 6789999766 5777778888999999
Q ss_pred hhhhhhcCCCCcccccCCCc---cCCccccccccCCccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCCCeEEE
Q 018339 180 IQAWEYVPLGPFLGKSFGTT---LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVT 256 (357)
Q Consensus 180 ~q~~~~~~l~~~~aK~fdt~---lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q 256 (357)
+|.. ..+..+|+.... +|+.+..++.+ +...+.+++++ ||+++|
T Consensus 143 ~~~~----~~~~~Ad~~~~~~~V~g~~~~~~~~~---------------------~l~~~~~~l~v--------nG~~~~ 189 (255)
T TIGR03220 143 WKIK----IQDTVADNASCGVFVLGDTRVDPRKL---------------------DLALCGMVLEK--------NGEIVS 189 (255)
T ss_pred CCCC----ccceeeecCCcceEEECCCcCCcccc---------------------ChhhCceEEEE--------CCEEEe
Confidence 8742 256778874431 33333221111 12345667777 999999
Q ss_pred ecchhhhhcCHHHHHHHHHHc-----CcccCCCCEEEcCCCCCCccCCCCceEEEEecCcccc
Q 018339 257 RSNFKYLYWTLTQQLAHHTIN-----GCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPL 314 (357)
Q Consensus 257 ~~~t~~M~~~~~~lIa~~~S~-----~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~i~g~~~l 314 (357)
++++++|++++.++|+|+ ++ +++|+|||+|+||||.|+.++++||.++++++|++++
T Consensus 190 ~g~~~~~lg~p~~~l~~L-~~~l~~~g~~L~aGdiV~TGt~~g~~~v~~Gd~v~~~~~glG~v 251 (255)
T TIGR03220 190 TGAGAAALGSPVNAVAWL-ANTLGRLGIPLKAGEVILSGSLAALVPVKAGDNLRVSIGGIGSC 251 (255)
T ss_pred ecchhhccCCHHHHHHHH-HHHHHHcCCCCCCCCEEECCCCCCCeeCCCCCEEEEEEcCCceE
Confidence 999999999999999998 55 8899999999999999886665555555555555443
No 14
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=99.87 E-value=2.1e-21 Score=185.23 Aligned_cols=170 Identities=16% Similarity=0.130 Sum_probs=131.6
Q ss_pred cceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhh
Q 018339 105 SSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE 184 (357)
Q Consensus 105 ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~ 184 (357)
+.+..+|..+..+. .....+|+||+|++||+++ +.+++.+|+.++|.++..+.++..++++.|.
T Consensus 85 ~~~~~~g~~~~~~~---------------~~~~~iE~Eiaf~l~~dl~-~~~~t~~ev~~ai~~v~paiEivdsr~~~~~ 148 (262)
T PRK11342 85 DMCYGDNEIIPFSR---------------VLQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDWS 148 (262)
T ss_pred hhhcCCCCeecccc---------------cCCcceeeEEEEEECCCCC-CCCCCHHHHHHhhceEeeeEEecCCcccCCC
Confidence 45556676665533 2357889999999999986 5678999999999999999999999888774
Q ss_pred hcCCCCcccccCCCc---cCCccccccccCCccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCCCeEEEecchh
Q 018339 185 YVPLGPFLGKSFGTT---LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK 261 (357)
Q Consensus 185 ~~~l~~~~aK~fdt~---lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~ 261 (357)
. ......+.+..+. +|+.+..+++++ ..++.+++++ ||+++|+|+++
T Consensus 149 ~-~~~~~iAD~~~~~~~VlG~~~~~~~~~d---------------------~~~~~~~l~v--------ng~~~q~g~~~ 198 (262)
T PRK11342 149 I-QFVDTVADNASCGVYVIGGPAQRPAGLD---------------------LKNCAMKMTR--------NNEEVSSGRGS 198 (262)
T ss_pred C-chhheeecccccceEEECCCcCCcccCC---------------------hhhCEEEEEE--------CCEEEEEEcHH
Confidence 3 2233456665442 787765544432 2557888887 99999999999
Q ss_pred hhhcCHHHHHHHHH----HcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCCCCcCCCCCCEEEEEEEEe
Q 018339 262 YLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCK 337 (357)
Q Consensus 262 ~M~~~~~~lIa~~~----S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~i~g~~~l~~~~~~~~~L~~GD~V~~~~~~~ 337 (357)
+|++++.++|+|++ +++++|+|||||+||||.++ .++++||+|+++ |+
T Consensus 199 ~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV~TGt~~~~--------------------------~~l~~Gd~v~~~--i~ 250 (262)
T PRK11342 199 ECLGHPLNAAVWLARKMASLGEPLRAGDIILTGALGPM--------------------------VAVNAGDRFEAH--IE 250 (262)
T ss_pred HhccCHHHHHHHHHHHHHHcCCCcCCCCEEEcCCCCCC--------------------------eeCCCCCEEEEE--EC
Confidence 99999999999873 44479999999999999764 567888888888 55
Q ss_pred CCCceeeeeeeeeeEee
Q 018339 338 GNGYTVGFGTCSGKIVP 354 (357)
Q Consensus 338 ~~~~~~~~G~~~~~v~~ 354 (357)
|+|++++++..
T Consensus 251 ------glG~v~~~~~~ 261 (262)
T PRK11342 251 ------GIGSVAATFSS 261 (262)
T ss_pred ------CCceEEEEEec
Confidence 88888888754
No 15
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=99.77 E-value=4.8e-18 Score=162.65 Aligned_cols=173 Identities=15% Similarity=0.071 Sum_probs=127.4
Q ss_pred ceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCCHHHHhhceeEEEEeecCc
Q 018339 97 PIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWS 176 (357)
Q Consensus 97 P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e~A~~~I~Gy~l~nD~s 176 (357)
|++=.-..+.+..+|..+.... -...-+|+||+|++|++++ +.+++.+|++++|.+|..+.|+.
T Consensus 78 P~~g~l~~~~~~~~g~~~~~~~---------------~~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEi~ 141 (267)
T TIGR02312 78 PDYGVLLDDMFFEDGSTIPADR---------------FIQPRVEVELAFVLKKDLE-GPNVTIFDVLNATDYVVPALEII 141 (267)
T ss_pred CeeEEecCccccCCCCeecccc---------------ccccccceEEEEEECCCCC-CCCCCHHHHHHHhheEEeeEEEe
Confidence 4433334455556666655421 2357899999999999986 57899999999999999999999
Q ss_pred hhhhhhhhhcC-----CCCcccccCCCc---cCCccccccccCCccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCC
Q 018339 177 ARDIQAWEYVP-----LGPFLGKSFGTT---LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAG 248 (357)
Q Consensus 177 aRd~q~~~~~~-----l~~~~aK~fdt~---lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~ 248 (357)
.+.++.|.... +....+.+..+. +|+.++.++.++ ...+.++|++
T Consensus 142 dsr~~~~~~~~~~~~~~~d~iADn~~~~~~v~G~~~~~~~~~d---------------------l~~~~~~l~~------ 194 (267)
T TIGR02312 142 DARIERVDPETGATRKVFDTISDNAANAGIVLGGRPVRPDALD---------------------LRWVGAILYR------ 194 (267)
T ss_pred eccccccccccCCccccccEecCCccceEEEECCCCCCccccC---------------------hhhcccEEEE------
Confidence 99998875321 122344444331 788766554432 2446677777
Q ss_pred CCCCeEEEecchhhhhcCHHHHHHHHH----HcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCcccc
Q 018339 249 KEDSCVVTRSNFKYLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPL 314 (357)
Q Consensus 249 ~~NGe~~q~~~t~~M~~~~~~lIa~~~----S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~i~g~~~l 314 (357)
||+++++|++++|+.++.+.++|++ .++.+|++||+|+|||+.++.++.+|+.++++++|++++
T Consensus 195 --nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G~~~~~~~~glG~v 262 (267)
T TIGR02312 195 --NGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSGDTFHADYGPLGTI 262 (267)
T ss_pred --CCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCCCEEEEEEcCCceE
Confidence 9999999999999999998888873 566799999999999999887776666666666665543
No 16
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=137.69 Aligned_cols=185 Identities=22% Similarity=0.170 Sum_probs=135.0
Q ss_pred ceeeec-CCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCCHHHHhhceeEEEEeecC
Q 018339 97 PIAYHG-RASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 175 (357)
Q Consensus 97 P~~f~k-~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e~A~~~I~Gy~l~nD~ 175 (357)
+.+|+| .+.+-+|+|+.|-+-+. |.+-..|.|+++++... |+ |.|||++||+
T Consensus 169 aEIFtKaqpmssVG~Ga~Igv~~~--------------S~WnnPEPEvvl~~dS~---G~----------I~GaTlgnDV 221 (379)
T COG3970 169 AEIFTKAQPMSSVGHGAQIGVRPD--------------SEWNNPEPEVVLAVDSS---GK----------IVGATLGNDV 221 (379)
T ss_pred hhheecCCccccccccceeeeccc--------------cccCCCCCeEEEEEcCC---Cc----------EEeeeecCcc
Confidence 556666 45566799999876443 88999999999999877 74 9999999999
Q ss_pred chhhhhhhhhcCCCCcccccCCC--ccCCccccccccCCccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCCC-
Q 018339 176 SARDIQAWEYVPLGPFLGKSFGT--TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS- 252 (357)
Q Consensus 176 saRd~q~~~~~~l~~~~aK~fdt--~lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~NG- 252 (357)
++||+..+. .|-..++|.... ++||+|++-|+.-... +.....++|.| .|+ +|
T Consensus 222 nlRD~Egrs--aLlL~kaKdnnasCaiGPfIrlfDe~f~~~-----------------dv~~a~vtLkv--~ge---dgf 277 (379)
T COG3970 222 NLRDFEGRS--ALLLSKAKDNNASCAIGPFIRLFDETFTID-----------------DVKSAEVTLKV--TGE---DGF 277 (379)
T ss_pred ccccccccc--chhcccccccCccccccceEEeecCCCChh-----------------hhhhceEEEEE--Ecc---Cce
Confidence 999998764 233446666555 4999999988754321 12344577776 343 34
Q ss_pred eEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCCCCcCCCCCCEEEE
Q 018339 253 CVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 332 (357)
Q Consensus 253 e~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~i~g~~~l~~~~~~~~~L~~GD~V~~ 332 (357)
..-...+++.|-.++.+++..+.-+......|-++++||.--++.-+.+ ..-+...+.||+||+
T Consensus 278 ~l~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lflGTmfaP~kDr~~----------------~g~gfth~~gD~VeI 341 (379)
T COG3970 278 FLEGSSNMAEISRSPEELVIQALNRDHQYPDGFALFLGTMFAPGKDRGL----------------KGLGFTHEVGDIVEI 341 (379)
T ss_pred EEeccccHHhhccCHHHHHHHHhccCCCCCCceeEEeeeeeccccccCC----------------CCCCcccCCCCEEEE
Confidence 3335667999999988887665578889999999999998654432111 012455799999999
Q ss_pred EEEEeCCCceeeeeeeeeeEeeCC
Q 018339 333 TGFCKGNGYTVGFGTCSGKIVPST 356 (357)
Q Consensus 333 ~~~~~~~~~~~~~G~~~~~v~~~~ 356 (357)
+ .. .||+|.|+|..++
T Consensus 342 S--tp------~lG~Lin~V~~~d 357 (379)
T COG3970 342 S--TP------KLGTLINPVTTSD 357 (379)
T ss_pred e--cc------ccceeeeeeeccC
Confidence 9 44 8999999998765
No 17
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=99.57 E-value=5.4e-14 Score=134.50 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=116.5
Q ss_pred CCceeceEEEEEEcCCCCCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCCc---cCCccccccccC
Q 018339 135 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT---LSPWIVTLDALE 211 (357)
Q Consensus 135 ~~ld~E~ELavVIgk~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt~---lGP~ivt~d~l~ 211 (357)
...-.|+||+|+++++++ +.+.+.+++.++|..+..+.++-...+..|.. .+....+.|..+. +||+...++.++
T Consensus 104 ~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEivdsR~~~~~~-~~~~~iADn~~~~~~vlG~~~~~~~~~d 181 (263)
T TIGR03218 104 IHPKVEAEIAFVTKAPLK-GPGCHIGDVLAATDFVMPAVEVIDSRYRDFKF-DLKSVIADNTSSARFVTGGRAANVEDLD 181 (263)
T ss_pred CcceeeeEEEEEECCCCC-CCCCCHHHHHHhhcEEEeeEEeccCcccCCCC-ChhheeeeccccceEEECCCCCCccccC
Confidence 356899999999999986 67899999999999999999998888876642 2344667776652 888776544432
Q ss_pred CccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHH----HHcCcccCCCCEE
Q 018339 212 PFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHH----TINGCNLRSGDLL 287 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~----~S~~~tL~pGDvI 287 (357)
..++.+++++ ||+++++|+.++.+.++...+.|+ ..++..|++||+|
T Consensus 182 ---------------------l~~~~~~l~~--------~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV 232 (263)
T TIGR03218 182 ---------------------LRTLGVVMEK--------NGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFI 232 (263)
T ss_pred ---------------------HhhCcEEEEE--------CCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEE
Confidence 2456777777 999999999999988887777776 4788899999999
Q ss_pred EcCCCCCCccCCCCceEEEEecCcccc
Q 018339 288 GTGTISGPEPESLGCLLELTWNGQKPL 314 (357)
Q Consensus 288 ~TGTp~Gv~~~~~G~~~e~~i~g~~~l 314 (357)
+|||..++.++.+|+.+.+.++|++++
T Consensus 233 ~tGs~t~~~~v~~G~~~~~~~~glG~v 259 (263)
T TIGR03218 233 MSGGITEAVAVAPGDSVTVRYQGLGSV 259 (263)
T ss_pred ECCcCcCceecCCCCEEEEEECCCceE
Confidence 999999877766666666666665543
No 18
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.47 E-value=2.5e-13 Score=127.73 Aligned_cols=166 Identities=19% Similarity=0.210 Sum_probs=127.7
Q ss_pred CcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCCHHHHhhceeEEEEeecCchhhhh-h
Q 018339 104 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ-A 182 (357)
Q Consensus 104 ~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIgk~~~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q-~ 182 (357)
.+....+|.+|..+.. -...+|+||+++++|+++ +.++|..|+++||.-+..+.++-.-.++ .
T Consensus 85 d~m~f~eg~~ip~~r~---------------~~prvE~EiafvL~kdlp-a~~~T~~d~l~a~~~v~palElidsri~~d 148 (264)
T COG3971 85 DDMAFNEGADIPFSRF---------------IQPRVEVEIAFVLKKDLP-APDCTVADVLNATDYVLPALELIDSRIKQD 148 (264)
T ss_pred HhHHhhcCCCCCcccc---------------cceeeeeeEEEEecCCCC-CCCCCHHHHHHHHHhhhhhhhhccchhhhC
Confidence 3444556666655443 245999999999999998 7899999999999999999999655555 4
Q ss_pred hhhcCCCCcccccCCCc---cCCccccccccCCccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCCCeEEEecc
Q 018339 183 WEYVPLGPFLGKSFGTT---LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSN 259 (357)
Q Consensus 183 ~~~~~l~~~~aK~fdt~---lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~NGe~~q~~~ 259 (357)
|.. ++..+.++|..+. |||-.+.+++++- .++...|.. ||++++.|.
T Consensus 149 ~~~-~~~dtiaDnaan~G~ViG~~~~~~~~ld~---------------------~~~~~~l~r--------ng~~~e~g~ 198 (264)
T COG3971 149 WQV-KFPDTIADNAANAGFVIGGRAVKPDDLDL---------------------RNVGATLYR--------NGVEEETGV 198 (264)
T ss_pred CCC-CcceEEecccccCceEECCCCCCchhhhh---------------------hhccceeee--------cCEEEEeee
Confidence 432 2345677776653 9987777766642 446667776 999999999
Q ss_pred hhhhhcCHHHHHHHHH----HcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccc
Q 018339 260 FKYLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 315 (357)
Q Consensus 260 t~~M~~~~~~lIa~~~----S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~i~g~~~l~ 315 (357)
.+..+.++..-+.|++ +.+.+|++||||+||.-.+.-+..+||++++.+.|++..+
T Consensus 199 ~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IVl~Gs~t~~v~~~~gd~~h~~~~~lG~v~ 258 (264)
T COG3971 199 GAAVLGHPAAALAWLANKLAAYGVPLKAGDIVLTGSFTGPVPARPGDTFHADFGGLGAVS 258 (264)
T ss_pred chhhcCCcHHHHHHHHHHHHHcCCCcccCcEEecCccCccccCCCCCEEEEEecCcCceE
Confidence 9999999999998875 7889999999999999988777766666666666665443
No 19
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=98.18 E-value=3.8e-05 Score=70.17 Aligned_cols=170 Identities=14% Similarity=0.142 Sum_probs=116.5
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCCceeeecCCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEEEEEcCCC
Q 018339 72 MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGN 151 (357)
Q Consensus 72 ~~H~~~~g~~~~~~~~~~~p~~~~~P~~f~k~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELavVIgk~~ 151 (357)
..|++|+... |-. +| ...|.+|--.+.-+.. ...|.... ..---|+|.+++..+.
T Consensus 12 ~~HI~EL~~l--GVp---~P--s~vP~~Y~v~~~lltq-~~~i~v~g----------------~~tSGE~E~vli~~~g- 66 (194)
T PF11010_consen 12 EHHIEELAAL--GVP---PP--SSVPLFYRVAPYLLTQ-ADEIEVLG----------------EDTSGEAEPVLIRHGG- 66 (194)
T ss_pred HHHHHHHHHh--CCC---CC--CCCCEEEEechhhCcc-cCeEEecc----------------CCCCceEEEEEEEECC-
Confidence 5799998652 322 22 3679999887776653 33443322 2334588988777643
Q ss_pred CCCCCCCHHHHhhceeEEEEeecCchhhhhhhhhcCCCCcccccCCC-ccCCccccccccCCccCCCCCCCCCCCccccc
Q 018339 152 ELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT-TLSPWIVTLDALEPFACDSPKQDPQPLPYLAE 230 (357)
Q Consensus 152 ~~g~~i~~e~A~~~I~Gy~l~nD~saRd~q~~~~~~l~~~~aK~fdt-~lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~ 230 (357)
+ .-++++.|=|.|++..... ..+|.... ++++-+-..+++.+.|
T Consensus 67 ---~-----------~~v~vgSDHTDR~lE~~sV-----a~SKq~c~Kpva~~~W~~~dV~dhW---------------- 111 (194)
T PF11010_consen 67 ---E-----------LYVGVGSDHTDRKLEAYSV-----AVSKQACPKPVAREAWRLDDVADHW---------------- 111 (194)
T ss_pred ---e-----------EEEEecCCCccchhhhcCc-----hhhhhcCCccchhhcCcHHHHHhhh----------------
Confidence 2 3478999999999976532 35666443 5787655556777655
Q ss_pred cCCcceeEEEEEEEeeCCCCCCeEEEecchhhhhcCHHHHHHHHHHcCcccCCCCEEEcCCCCCCccCCCCceEEEEec
Q 018339 231 KISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWN 309 (357)
Q Consensus 231 ~~~~~l~i~l~v~i~~~~~~NGe~~q~~~t~~M~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G~~~e~~i~ 309 (357)
+.+.|+.++..+| .+.+.|+|+++.|+ ++.++|+-+......+.+|-++++||..-.+.+++|+.+++++.
T Consensus 112 ---D~l~Lrsw~~~dg----~~~lYQeGtla~ll-~p~~ll~~~~~~~~~~~~g~~m~~GT~~~~g~~~~a~~f~~eL~ 182 (194)
T PF11010_consen 112 ---DELELRSWITEDG----ERVLYQEGTLAALL-PPADLLERLGEGRGDLPEGTAMFCGTVPAIGGIRPADRFEMELE 182 (194)
T ss_pred ---hheeEEEEEeeCC----CEEEEeecchhhcC-CHHHHHHhhhccCCCCCCCEEEEEeccccccCccccceEEEEEE
Confidence 4577777765533 45788999999875 78899998722567899999999999987777666666666553
No 20
>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the N-terminal domain of fumarylacetoacetase.; GO: 0004334 fumarylacetoacetase activity, 0009072 aromatic amino acid family metabolic process; PDB: 1QCN_B 1QCO_B 2HZY_A 1QQJ_B 1HYO_A.
Probab=97.77 E-value=1.6e-05 Score=66.52 Aligned_cols=58 Identities=48% Similarity=0.805 Sum_probs=45.6
Q ss_pred CcCcccHHHHHhCCchHHHHHHHHHHHHHhcCchhhhhhhhhccCccccCCCceecCC
Q 018339 2 ISWQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 59 (357)
Q Consensus 2 ~~~~~~l~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ll~P 59 (357)
+|.+++||+|+++|++.|.++|..++++|+...+...+.........+|+++|+|+.|
T Consensus 50 ~f~~~tLN~fmalg~~~w~avR~~L~~lL~~~~~~~~~~~~~~~~~L~~~~~v~mhLP 107 (107)
T PF09298_consen 50 AFAQPTLNDFMALGRPAWRAVRARLQELLSADNSELSDNQALVEPALVPQAEVTMHLP 107 (107)
T ss_dssp GGGSSSSHHHHHC-HHHHHHHHHHHHHHHBTTSCHHHT-HHHHHHHEEEGGGEEEE-S
T ss_pred HhcCCCHHHHHhCCHHHHHHHHHHHHHHHhccCccccchHHHHHHhcccHHHhhcCCC
Confidence 5889999999999999999999999999985444344444455667899999999988
No 21
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.74 E-value=0.00012 Score=69.25 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=86.9
Q ss_pred CCceeeec-CCcceecCCCeeecCCCCCCCCCCCCCCCCCCCCceeceEEE--EEEcCCCCCCCCCCHHHHhhceeEEEE
Q 018339 95 HLPIAYHG-RASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA--AVVGPGNELGKPIDVNEAADHIFGVML 171 (357)
Q Consensus 95 ~~P~~f~k-~~ssv~~~g~~I~~P~~~~~~~~~~~~~~~~~~~ld~E~ELa--vVIgk~~~~g~~i~~e~A~~~I~Gy~l 171 (357)
-+|..|.| .-+.++.+|.+++.|.. ...=--|.||+ -+||.+ |. .|-.||++
T Consensus 139 vQPEWFyKG~G~~~vapGa~l~sPaF--------------AedggEEpEiaGiYlig~d---g~--------p~RlGfal 193 (333)
T COG3802 139 VQPEWFYKGDGTVAVAPGAPLPSPAF--------------AEDGGEEPEIAGIYLIGDD---GT--------PYRLGFAL 193 (333)
T ss_pred cCcceEEeCCCcEEecCCCCCCChhh--------------hhccCCCceeeEEEEECCC---Cc--------eeEEeeee
Confidence 35665555 44556788999888864 33445678886 567876 53 36789999
Q ss_pred eecCchhhhhhhhhcCCCCcccccCCCccCCccccccccCCccCCCCCCCCCCCccccccCCcceeEEEEEEEeeCCCCC
Q 018339 172 MNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKED 251 (357)
Q Consensus 172 ~nD~saRd~q~~~~~~l~~~~aK~fdt~lGP~ivt~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~i~~~~~~N 251 (357)
+|++|.--..+.+| +-...+|=-..++||-|..-+ +. ..++=.-++. ++
T Consensus 194 ~NEfSDHvtEr~NY--L~LAHSKLR~as~GPEl~vG~-lP----------------------~~vrG~SRI~------Rd 242 (333)
T COG3802 194 ANEFSDHVTERVNY--LYLAHSKLRNASFGPELLVGA-LP----------------------EDVRGVSRIL------RD 242 (333)
T ss_pred cchhhhhhhhccce--EEeehhhhhccccCcceeecc-Cc----------------------hhhcCceeee------cC
Confidence 99999876655444 222456655567999876542 32 1222223331 28
Q ss_pred CeEEEecc----hhhhhcCHHHHHHHHHHcCcccCCCCEE
Q 018339 252 SCVVTRSN----FKYLYWTLTQQLAHHTINGCNLRSGDLL 287 (357)
Q Consensus 252 Ge~~q~~~----t~~M~~~~~~lIa~~~S~~~tL~pGDvI 287 (357)
|++.-+-. -++|-.+++.|=-|.-...+-.+||||=
T Consensus 243 g~viwek~FlSGE~nMsHs~aNLEhhHFkY~lfrrpGDvH 282 (333)
T COG3802 243 GEVIWEKPFLSGEANMSHSIANLEHHHFKYALFRRPGDVH 282 (333)
T ss_pred CEEEEecccccCccchhhhhhhhhhhhhhhhhhcCCCceE
Confidence 87764432 3689999988865544444567999973
No 22
>PRK10691 hypothetical protein; Provisional
Probab=77.65 E-value=3.3 Score=38.72 Aligned_cols=10 Identities=40% Similarity=0.338 Sum_probs=7.7
Q ss_pred cCCCCCCEEE
Q 018339 322 KFLEDGDEVT 331 (357)
Q Consensus 322 ~~L~~GD~V~ 331 (357)
..|++||+|.
T Consensus 180 ~tL~aGDvI~ 189 (219)
T PRK10691 180 FTLRAGDVVL 189 (219)
T ss_pred CccCCCCEEE
Confidence 4688888885
No 23
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=68.27 E-value=21 Score=26.53 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=11.9
Q ss_pred CCcCCCCCCEEEEEE
Q 018339 320 TRKFLEDGDEVTFTG 334 (357)
Q Consensus 320 ~~~~L~~GD~V~~~~ 334 (357)
....|++||+|++--
T Consensus 46 ~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 46 AQFVLHEGDRIEILS 60 (65)
T ss_pred CccccCCCCEEEEEE
Confidence 356799999998763
No 24
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=48.19 E-value=21 Score=34.00 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=18.3
Q ss_pred CcCCCCCCEEEEEEEEeCCCceeeeeeeee
Q 018339 321 RKFLEDGDEVTFTGFCKGNGYTVGFGTCSG 350 (357)
Q Consensus 321 ~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~ 350 (357)
..++++||+|+++ |. |+|+++=
T Consensus 232 ~~~v~~Gd~v~~~--~~------glG~v~~ 253 (255)
T TIGR03220 232 LVPVKAGDNLRVS--IG------GIGSCSV 253 (255)
T ss_pred CeeCCCCCEEEEE--Ec------CCceEEE
Confidence 4579999999999 56 9998764
No 25
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=38.83 E-value=76 Score=25.47 Aligned_cols=15 Identities=33% Similarity=0.173 Sum_probs=12.1
Q ss_pred CCcCCCCCCEEEEEE
Q 018339 320 TRKFLEDGDEVTFTG 334 (357)
Q Consensus 320 ~~~~L~~GD~V~~~~ 334 (357)
...+|+.||.|-.++
T Consensus 46 ~rp~L~~GDlV~ArV 60 (86)
T cd05790 46 NRPNLNVGDLVYARV 60 (86)
T ss_pred ccccCCCCCEEEEEE
Confidence 467899999998774
No 26
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes. In most cases these proteins also contain IPR002529 from INTERPRO, which is found towards the C terminus. ; PDB: 3RR6_A 2DFU_D 3QDF_A.
Probab=35.96 E-value=12 Score=26.67 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.1
Q ss_pred ccCccccCCCceecCC
Q 018339 44 RQKSLVPMGKVEMLLP 59 (357)
Q Consensus 44 ~~~~~~~~~~v~ll~P 59 (357)
..+..+|+++|+||+|
T Consensus 35 ~tg~~~~L~~VrLLaP 50 (50)
T PF10370_consen 35 PTGETLPLAEVRLLAP 50 (50)
T ss_dssp EEEEEEEGGGSEEE-S
T ss_pred cCCCEEechhEEEcCC
Confidence 3677899999999998
No 27
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=32.93 E-value=63 Score=26.12 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.9
Q ss_pred cCcccCCCCEEEcCCCCCC
Q 018339 277 NGCNLRSGDLLGTGTISGP 295 (357)
Q Consensus 277 ~~~tL~pGDvI~TGTp~Gv 295 (357)
+.-+|+.||.|.+|+-.|.
T Consensus 23 ~~GtL~~Gd~iv~G~~~Gk 41 (95)
T cd03701 23 QNGTLKKGDVIVAGGTYGK 41 (95)
T ss_pred EcCeEecCCEEEECCccce
Confidence 3458999999999998764
No 28
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=29.72 E-value=1.5e+02 Score=27.30 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=37.2
Q ss_pred cCCCCEEEcCCC--CCCccCCCCceEEEEecCcccccc--------CCCC-CcCCCCCCEEEEE
Q 018339 281 LRSGDLLGTGTI--SGPEPESLGCLLELTWNGQKPLSL--------DGFT-RKFLEDGDEVTFT 333 (357)
Q Consensus 281 L~pGDvI~TGTp--~Gv~~~~~G~~~e~~i~g~~~l~~--------~~~~-~~~L~~GD~V~~~ 333 (357)
.-|||+|.+.-. .|-+....|..+.++..|.-..+. .... +..+|+||+|--+
T Consensus 8 v~PGd~~a~~EE~~~G~gt~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~~~~~K~GdiV~gr 71 (188)
T COG1096 8 VLPGDVLAVIEEFLPGEGTYEEGGEIRAAATGVVRRDDKNRVISVKPGKKTPPLPKGGDIVYGR 71 (188)
T ss_pred EcCcceeeeeeeeecCCCeEeECCEEEEeecccEEEcccceEEEeccCCCCCCCCCCCCEEEEE
Confidence 458999998887 566666667777777666544322 2333 7889999999777
No 29
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=27.40 E-value=48 Score=27.16 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=19.6
Q ss_pred cCCCCCCEEEEEEEEeCCCceeeeeeeeeeEeeCC
Q 018339 322 KFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 356 (357)
Q Consensus 322 ~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~~ 356 (357)
..|..||.|++. |||+..-+.-+++
T Consensus 35 ~aL~~G~~V~l~----------gFG~F~v~~R~aR 59 (94)
T COG0776 35 EALAKGERVELR----------GFGTFEVRERAAR 59 (94)
T ss_pred HHHHcCCeEEEe----------eeeeeEeeccCCC
Confidence 358889999887 8999887766554
No 30
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=24.41 E-value=97 Score=23.89 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=13.6
Q ss_pred CCcCCCCCCEEEEEEE
Q 018339 320 TRKFLEDGDEVTFTGF 335 (357)
Q Consensus 320 ~~~~L~~GD~V~~~~~ 335 (357)
...|+.+||.|.++.+
T Consensus 41 ~rI~I~~GD~V~Ve~s 56 (68)
T TIGR00008 41 HYIRILPGDKVKVELS 56 (68)
T ss_pred ccEEECCCCEEEEEEC
Confidence 4788999999999954
No 31
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=21.21 E-value=1.1e+02 Score=24.90 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=13.1
Q ss_pred CCcCCCCCCEEEEEEE
Q 018339 320 TRKFLEDGDEVTFTGF 335 (357)
Q Consensus 320 ~~~~L~~GD~V~~~~~ 335 (357)
...|+.+||.|.||.+
T Consensus 43 ~rIrIl~GD~V~VE~s 58 (87)
T PRK12442 43 HRIRILAGDRVTLELS 58 (87)
T ss_pred eeEEecCCCEEEEEEC
Confidence 3678999999999954
No 32
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=20.90 E-value=38 Score=33.77 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCeEEEecchhhhhcCHHHHHHHH--------H-------HcCcccCCCCEEEcCCC
Q 018339 251 DSCVVTRSNFKYLYWTLTQQLAHH--------T-------INGCNLRSGDLLGTGTI 292 (357)
Q Consensus 251 NGe~~q~~~t~~M~~~~~~lIa~~--------~-------S~~~tL~pGDvI~TGTp 292 (357)
||+++++..-..-.|+.+-.|+-. . ...+.|+.||||+.+|=
T Consensus 198 ~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~GDvIilATD 254 (330)
T KOG1379|consen 198 EGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKGDVIILATD 254 (330)
T ss_pred CCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCCCEEEEecc
Confidence 999999998888888755443211 0 23468999999999996
No 33
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=20.90 E-value=1.3e+02 Score=28.88 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCCEEEcCCCCCCc-------------------cCCCCceEEEEecCccccccCCCCCcCCCCCCEEEEEEEEeCCCcee
Q 018339 283 SGDLLGTGTISGPE-------------------PESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTV 343 (357)
Q Consensus 283 pGDvI~TGTp~Gv~-------------------~~~~G~~~e~~i~g~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~ 343 (357)
-|.++.+|+-..+. .+++||.+-. | ++ .....+++||+++++ +.
T Consensus 195 nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~T---G--s~----~~~~~v~~G~~~~~~--~~------ 257 (267)
T TIGR02312 195 NGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLA---G--SF----TRPVAARSGDTFHAD--YG------ 257 (267)
T ss_pred CCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEEC---C--CC----CCceecCCCCEEEEE--Ec------
Confidence 46688888665431 3667776643 1 11 236779999999999 56
Q ss_pred eeeeeeeeE
Q 018339 344 GFGTCSGKI 352 (357)
Q Consensus 344 ~~G~~~~~v 352 (357)
|||+++=++
T Consensus 258 glG~v~~~f 266 (267)
T TIGR02312 258 PLGTISVRF 266 (267)
T ss_pred CCceEEEEE
Confidence 899876543
No 34
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=20.84 E-value=1.8e+02 Score=22.30 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=14.1
Q ss_pred CcCCCCCCEEEEEEEEe
Q 018339 321 RKFLEDGDEVTFTGFCK 337 (357)
Q Consensus 321 ~~~L~~GD~V~~~~~~~ 337 (357)
...|++||.|++.+.+.
T Consensus 41 ~~~l~~Gd~V~v~G~v~ 57 (73)
T cd04487 41 YPEVEVGDIVRVTGEVE 57 (73)
T ss_pred cCCCCCCCEEEEEEEEe
Confidence 46799999999997755
Done!