RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018339
(357 letters)
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 444 bits (1143), Expect = e-156
Identities = 204/352 (57%), Positives = 256/352 (72%), Gaps = 1/352 (0%)
Query: 5 QPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGD 64
+ LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP IGD
Sbjct: 66 ETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGD 125
Query: 65 YTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPS 124
YTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ P
Sbjct: 126 YTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPD 185
Query: 125 GNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE 184
+ PP +G + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSARDIQ WE
Sbjct: 186 NSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWE 245
Query: 185 YVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 244
YVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI+L V +
Sbjct: 246 YVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSL 305
Query: 245 KPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLL 304
K G + + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G +L
Sbjct: 306 KGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSML 365
Query: 305 ELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 355
EL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 366 ELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 130 bits (328), Expect = 6e-35
Identities = 58/359 (16%), Positives = 109/359 (30%), Gaps = 62/359 (17%)
Query: 12 LSLGRPAWKEARDMLQKL-----LSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGD-Y 65
L+ AR + L + + + + + + P+ +
Sbjct: 43 LTRCSEVGHIARTLQAALDDWAHAGPRLERVAEGIETGAQPTMRFHEHDAASPLPRAFQW 102
Query: 66 TDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSG 125
D + ++H + +PA+++ P+ Y G + S + I+
Sbjct: 103 ADGSAYVNHVELVRKARNAE---MPASFWTDPLIYQGGSDSFLGPRDPILMADD------ 153
Query: 126 NSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEY 185
+ +D E E A +V ++EA I VML+ND S R + E
Sbjct: 154 --------AWGIDMEGEAAVIVDDV---PMGATLDEAKAAIRLVMLVNDVSLRGLIPGEL 202
Query: 186 VP-LGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 244
G + K + SP VT + L + + L + +
Sbjct: 203 AKGFGFYQSKPS-SAFSPVAVTPEELG---------EAW----------DGGKLHLPLHV 242
Query: 245 KPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLL 304
G+ + + + Q + H L +G ++G+GT+S G +
Sbjct: 243 DLNGEPFGRANAGID---MTFDFPQLIVHAA-RTRPLSAGTIIGSGTVSNKLEGGPGRPV 298
Query: 305 ELTWNGQKPLSLDGFTRK---------FLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 354
G ++ FL+ GD V K FG K+
Sbjct: 299 SEGGAGYSCIAELRMIETIEGGAPKTQFLKFGDVVRIE--MKDRTGHSIFGAIEQKVGK 355
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 87.0 bits (216), Expect = 2e-19
Identities = 46/235 (19%), Positives = 78/235 (33%), Gaps = 72/235 (30%)
Query: 104 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 163
+S+ ++ PR S LD+E+E+A V+G G I+ ++A
Sbjct: 136 PTSISGPRDAVIAPRT--------------SHALDYEIEIAVVIGKP---GYRIERSQAI 178
Query: 164 DHIFGVMLMNDWSARDIQAWEYVPLGP-----FLGKSFGTT--LSPWIVTLDALEPFACD 216
H+ G ML ND +ARD+ P GK + T PW+ T +
Sbjct: 179 KHVAGYMLANDITARDVALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDT----- 233
Query: 217 SPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTI 276
+ D L + G+ + + + + + +
Sbjct: 234 ----TFETF-----------DFELRIN----GE----LRQSGSTVDMTLGFAEVVETVS- 269
Query: 277 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 331
LR+GD++ TGT P G P ++L GD +
Sbjct: 270 ATIALRAGDIILTGT-----PGGCGF-------QFDP-------PRYLRPGDVIE 305
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 72.2 bits (178), Expect = 8e-15
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 104 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 163
+S++ ++ P+G ++ + +E+E+A VVG K + +A
Sbjct: 75 NTSLLPHKGVVLYPKG--------------ARFVHYEVELAVVVG---RPMKRVRAKDAL 117
Query: 164 DHIFGVMLMNDWSARDIQAWEYVPLGPFL-GKSFGTT--LSPWIVTLDALEP 212
D++ G + ND ARD + P + K T L P++V + +P
Sbjct: 118 DYVLGYTIANDLVARDYVTNTF---RPPIRAKGRDTFLPLGPFLVVEEVEDP 166
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 72.6 bits (179), Expect = 8e-15
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 32/115 (27%)
Query: 104 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 163
+S++ G I P + ++ E E+A V+G K + AA
Sbjct: 96 NTSIIGPGLPIQLPPS--------------ATEVHHEGELAIVIG---RPCKDVPAARAA 138
Query: 164 DHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSFGTT--LSPWIVTLDALEP 212
++I G + ND SARD Q W K T L PWIVT L+P
Sbjct: 139 ENILGYTIGNDVSARDHQRADGQW-------TRAKGHDTFCPLGPWIVT--DLDP 184
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 72.6 bits (179), Expect = 2e-14
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 104 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 163
+++ VRP + + +E E+ V+G + + + +A
Sbjct: 254 PNTLTGDNQTSVRPNN--------------IEYMHYEAELVVVIG---KQARNVSEADAM 296
Query: 164 DHIFGVMLMNDWSARDIQAWEYVPLGPFL-GKSFGTT--LSPWIVTLDALEPFACDSPKQ 220
D++ G + ND++ RD Y P L KS + IV +A+
Sbjct: 297 DYVAGYTVCNDYAIRDYLENYY---RPNLRVKSRDGLTPMLSTIVPKEAIP--------- 344
Query: 221 DPQPL 225
DP L
Sbjct: 345 DPHNL 349
Score = 68.0 bits (167), Expect = 7e-13
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 35/141 (24%)
Query: 74 HAKNCG-TIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 132
+ P A P + + ++V+ G I P+
Sbjct: 15 QLDAWQEAFQQSPYKAPPKT----AVWFIKPRNTVIGCGEPIPFPQ-------------- 56
Query: 133 PSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQA---WEYVPLG 189
+K+ +A +VG + + +AA++I G L ND S +
Sbjct: 57 -GEKVLSGATVALIVG---KTATKVREEDAAEYIAGYALANDVSLPEESFYRPA------ 106
Query: 190 PFLGKSFGTT--LSPWIVTLD 208
K + + +
Sbjct: 107 -IKAKCRDGFCPIGETVALSN 126
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 70.7 bits (174), Expect = 3e-14
Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 47/174 (27%)
Query: 49 VPMGKVEMLLPME------IG-DYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLP---I 98
+ V +L P +G +Y + H + G F P F +
Sbjct: 34 YDLASVTLLPPATPTKIVCVGRNYRE------HIREMGHDFGEDLPKEPG-LFLKGPNAL 86
Query: 99 AYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPID 158
A G + + P +++L +E E+A VVG + + +
Sbjct: 87 ARPGNPRDPWGTAEPVPYPFF--------------TEELHYEGELAVVVG---DRMRHVP 129
Query: 159 VNEAADHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSFGTT--LSPWIVT 206
+A DH+ G + D +ARD+Q W KS L PW+ T
Sbjct: 130 PEKALDHVLGYTVAVDITARDVQKKDLQW-------VRAKSADKFLPLGPWLET 176
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 69.9 bits (172), Expect = 4e-14
Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 58/219 (26%)
Query: 104 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 163
+++ G+ I+ P ++ L ELE+ V+G + + A
Sbjct: 50 STAYAPEGSPILMPAY--------------TRNLHHELELGVVMGKR---CRAVPEAAAM 92
Query: 164 DHIFGVMLMNDWSARDIQAWEYVPLGPF-LGKSFGTT--LSPWIVTLDALEPFACDSPKQ 220
D++ G L D +ARD+Q P+ L KSF + +S ++
Sbjct: 93 DYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPK----------EKIP 142
Query: 221 DPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH----HTI 276
DP + L+V + + + +++ +++ T
Sbjct: 143 DPH-----------KLKLWLKV--------NGELRQEGETSSMIFSIPYIISYVSKIIT- 182
Query: 277 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 315
L GD++ TGT G P +E +G ++
Sbjct: 183 ----LEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMT 217
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 68.7 bits (169), Expect = 1e-13
Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 70/205 (34%)
Query: 104 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 163
ASS V G P+ + ELE+A ++G + + A
Sbjct: 47 ASSAVPFGPVFSIPKD--------------QGSVHHELEIAILIG---KALSRASTEQVA 89
Query: 164 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVTLDALEPF 213
+ I G+ L D + RD+Q WE KSF L+ ++
Sbjct: 90 ESIAGIGLGLDLTLRDVQDQLKEKGHPWE-------RAKSFDGACPLTEFVAV------- 135
Query: 214 ACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 273
+ ++LE + + + + + + +AH
Sbjct: 136 -----NLASEDEWQ-------AIGLTLEK--------NGQFQQQGSSAEMLFPILPLIAH 175
Query: 274 ----HTINGCNLRSGDLLGTGTISG 294
+ L+ GD++ TGT +G
Sbjct: 176 MSEHFS-----LQPGDVILTGTPAG 195
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 67.9 bits (167), Expect = 2e-13
Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 72/205 (35%)
Query: 104 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 163
+++ + P+ + E+E+A ++G K + A
Sbjct: 51 ETALCDIRQPVSIPKD--------------FGSVHHEIELAVLIGTP---LKQASEDRVA 93
Query: 164 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVTLDALEPF 213
I G + D + R++QA WE K+F + +S +I
Sbjct: 94 RAIAGYGVALDLTLRELQAGFKKAGQPWE-------KAKAFDGSCPISGFIPV------- 139
Query: 214 ACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 273
+ D Q D+SL + + + + N + + + +++
Sbjct: 140 ---AEFGDAQ-----------QADLSLTI--------NGEIRQQGNTRDMITPIIPLISY 177
Query: 274 ----HTINGCNLRSGDLLGTGTISG 294
T LR+GD++ TGT G
Sbjct: 178 MSRFFT-----LRAGDIVLTGTPQG 197
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 68.9 bits (169), Expect = 2e-13
Identities = 43/230 (18%), Positives = 69/230 (30%), Gaps = 79/230 (34%)
Query: 104 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 163
+ V G I S+ E E+A V+ +
Sbjct: 121 PNRCVGHGEAIAVRSD--------------SEWTLPEPELAVVLD-------------SN 153
Query: 164 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQD 221
I G +M+D SARD++A PL K + P IVT D ++ +
Sbjct: 154 GKILGYTIMDDVSARDLEAEN--PLYLPQSKIYAGCCAFGPVIVTSDEIK---------N 202
Query: 222 PQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNL 281
P L DI+L++ + N + + ++ + I +
Sbjct: 203 PYSL-----------DITLKIV----REGRVFFEGSVNTNKMRRKI-EEQIQYLIRDNPI 246
Query: 282 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 331
G +L TGT P G + L+D D V
Sbjct: 247 PDGTILTTGTAIVP----------------------GRDK-GLKDEDIVE 273
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 61.2 bits (149), Expect = 5e-11
Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 66/218 (30%)
Query: 104 ASSVVISGTDIVRPRG--------QFAPSGNSPPPFGP--SQKLDFELEMAAVVGPGNEL 153
SS+V + + G +P P K+ E+E+A +V +
Sbjct: 41 TSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVS---KH 97
Query: 154 GKPIDVN---EAADHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--L 200
+ E D I GV L D +AR++Q W + K F T +
Sbjct: 98 LSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWT-------ISKGFDTFMPI 150
Query: 201 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNF 260
S + ++ + + + V + +
Sbjct: 151 SAIVSR------------EKFSSY----KSNLQDIFRVKCSV--------NGQLRQDGGT 186
Query: 261 KYLYWTLTQQLAH----HTINGCNLRSGDLLGTGTISG 294
+ L + L H + L GD++ TGT +G
Sbjct: 187 NLMLHPLHKILQHISTMIS-----LEPGDIILTGTPAG 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.009
Identities = 43/256 (16%), Positives = 73/256 (28%), Gaps = 103/256 (40%)
Query: 118 RGQFAPSGNSPPPFGPSQKLDFELE--------MAAVVG-PGNELGKPID-VNE---AAD 164
R A P P L+ LE M ++ ++ ++ N A
Sbjct: 309 RCYEA----YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 165 HIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPF---ACDSPKQD 221
+ + L+N A++ V GP P +L L A D
Sbjct: 365 QVE-ISLVN--GAKN-----LVVSGP-----------P--QSLYGLNLTLRKAKAPSGLD 403
Query: 222 PQPLPYLAEK--ISKNYD-IS-------LEVQIKPAG---KEDSCVVTRSNFKYLYWTLT 268
+P+ K S + ++ L PA +D + ++N +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLV----PASDLINKD---LVKNNVS---FN-A 452
Query: 269 QQLA---HHTINGCNLR--SGDLL----------------------------GTGTISGP 295
+ + + T +G +LR SG + G G SG
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG- 511
Query: 296 EPESLGCLLELTWNGQ 311
LG L +G
Sbjct: 512 ----LGVLTHRNKDGT 523
Score = 35.0 bits (80), Expect = 0.046
Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 62/200 (31%)
Query: 16 RPAWKEA-RDMLQKLLSSNEATLRDNANLRQKSLV-----PMGK--VEMLLPMEIGDYTD 67
+ W A S + +N +L GK E M D
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNP----VNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 68 -------FFSSMHHAKNCGTIFRGPA-------NAVPA-------------NWFHLP--- 97
F ++ + FR PA + +P
Sbjct: 1699 GKLKTEKIFKEINE-HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 98 -IAYH--G-----RASSVVIS---GTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAV 146
A H G + + V+S ++V RG P + ++ M A
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM---QVAVPRDELGRSNY--GMIA- 1811
Query: 147 VGPGNELGKPIDVNEAADHI 166
+ PG + EA ++
Sbjct: 1812 INPG-RVAASFS-QEALQYV 1829
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.39
Identities = 47/337 (13%), Positives = 83/337 (24%), Gaps = 96/337 (28%)
Query: 20 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCG 79
K+ +DM + +LS E ++ G F++ + +
Sbjct: 36 KDVQDMPKSILSKEEI----------DHIIMSKDAVS------GTLRLFWTLLSKQEEMV 79
Query: 80 TIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGP----SQ 135
F + + PI R S++ R R N F
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRL 134
Query: 136 KLDFELEMA----------AVVG-PGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE 184
+ +L A + G G GK + +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVC--------------LSYKVQC 178
Query: 185 YVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 244
+ F W+ L C+SP+ + L L +I N+ +
Sbjct: 179 KMDFKIF-----------WL-NLKN-----CNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 245 KPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGC-----NLRSGDLLGTGTISGPEPES 299
+ + L + L C N+++ +
Sbjct: 222 NI----------KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--------NAFN 263
Query: 300 LGC-LLELTWNGQKPLSLDGFTRK--FLEDGDEVTFT 333
L C +L T Q L T L+ T T
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLT 299
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S
genomics, joint center for structural genomics, JCSG;
HET: MSE UNL; 2.00A {Bacillus halodurans}
Length = 208
Score = 27.9 bits (63), Expect = 3.5
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 318 GFTRKFLEDGDEVTFTGFCKGNG 340
+ + +G VT G KG+G
Sbjct: 179 HTCYQTIVNGKTVTVGGVAKGSG 201
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.0
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 204 IVTLDA-LEPFACDSPKQDPQPLPYLAEKIS 233
+ L A L+ +A DS P LA K +
Sbjct: 22 LKKLQASLKLYADDSA-------PALAIKAT 45
>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_A
Length = 199
Score = 27.2 bits (61), Expect = 6.6
Identities = 7/17 (41%), Positives = 7/17 (41%)
Query: 324 LEDGDEVTFTGFCKGNG 340
L D T G KG G
Sbjct: 176 LHHHDNWTVGGMAKGAG 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.432
Gapped
Lambda K H
0.267 0.0823 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,705,337
Number of extensions: 338908
Number of successful extensions: 761
Number of sequences better than 10.0: 1
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 23
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)