RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018339
(357 letters)
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 336 bits (862), Expect = e-116
Identities = 178/295 (60%), Positives = 221/295 (74%), Gaps = 1/295 (0%)
Query: 62 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF 121
IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ
Sbjct: 3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 62
Query: 122 APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 181
P + PP +G + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSARDIQ
Sbjct: 63 RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 122
Query: 182 AWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLE 241
WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI+L
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182
Query: 242 VQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG 301
V +K G + + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 242
Query: 302 CLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 355
+LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 297
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 118
Score = 72.7 bits (178), Expect = 1e-16
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 5 QPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 59
+ LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 64 ETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLP 118
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 73.4 bits (179), Expect = 2e-15
Identities = 44/244 (18%), Positives = 74/244 (30%), Gaps = 43/244 (17%)
Query: 74 HAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPS--------- 124
H K N+ P P + SS+V + + + A S
Sbjct: 21 HIKELN-------NSTPKQ----PFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDG 69
Query: 125 -GNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAW 183
P K+ E+E+A +V + E D I GV L D +AR++Q
Sbjct: 70 TNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDE 129
Query: 184 EYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQ 243
P+ T P + + + S QD + + V
Sbjct: 130 AKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQD-------------IFRVKCSV- 175
Query: 244 IKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCL 303
+ + + L + L H + +L GD++ TGT +G G
Sbjct: 176 -------NGQLRQDGGTNLMLHPLHKILQHIS-TMISLEPGDIILTGTPAGVGELKPGDR 227
Query: 304 LELT 307
+
Sbjct: 228 VHCE 231
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 48.2 bits (114), Expect = 3e-07
Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 46/215 (21%)
Query: 97 PIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKP 156
P+ + +++ G+ I+ P L ELE+ V+ + +
Sbjct: 35 PVLFLKPSTAYAPEGSPILMPAYTR--------------NLHHELELGVVM---GKRCRA 77
Query: 157 IDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPF-LGKSFGTTLSPWIVTLDALEPFAC 215
+ A D++ G L D +ARD+Q P+ L KSF +
Sbjct: 78 VPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVP-------- 129
Query: 216 DSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHT 275
EKI + + L +++ + + + +++ +++ +
Sbjct: 130 -------------KEKIPDPHKLKLWLKV------NGELRQEGETSSMIFSIPYIISYVS 170
Query: 276 INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 310
L GD++ TGT G P +E +G
Sbjct: 171 -KIITLEEGDIILTGTPKGVGPVKENDEIEAGIHG 204
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 40.2 bits (93), Expect = 1e-04
Identities = 30/195 (15%), Positives = 65/195 (33%), Gaps = 32/195 (16%)
Query: 116 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 175
+ + + + +E E+ V+G + + +A D++ G + ND+
Sbjct: 39 KAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQ---ARNVSEADAMDYVAGYTVCNDY 95
Query: 176 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 235
+ RD Y P + T + IV E I
Sbjct: 96 AIRDYLENYYRPNLRVKSRDGLTPMLSTIVP----------------------KEAIPDP 133
Query: 236 YDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGP 295
++++L + + + + L +++ +A+ + L GD++ TGT G
Sbjct: 134 HNLTLRTFV------NGELRQQGTTADLIFSVPFLIAYLS-EFMTLNPGDMIATGTPKGL 186
Query: 296 EPESLGCLLELTWNG 310
G + + G
Sbjct: 187 SDVVPGDEVVVEVEG 201
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 34.9 bits (79), Expect = 0.008
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 264 YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 310
Q L+ + L GD + GT G + + G
Sbjct: 150 QRNAAQLLSALS-EFATLNPGDAILLGTPQARVEIQPGDRVRVLAEG 195
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 33.7 bits (76), Expect = 0.020
Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 31/196 (15%)
Query: 116 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 175
+P + E+E+A ++G + I G + D
Sbjct: 47 KPETALCDLRQPLAIPSDFGSVHHEVELAVLIGAT---LRQATEEHVRKAIAGYGVALDL 103
Query: 176 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPL-PYLAEKISK 234
+ RD+Q P+ A D+ + +
Sbjct: 104 TLRDVQGKMKKAGQPWEK------------------AKAFDNSCPLSGFIPAAEFTGDPQ 145
Query: 235 NYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISG 294
N +SL V + + + + +A+ + L++GD++ TGT G
Sbjct: 146 NTTLSLSV--------NGEQRQQGTTADMIHKIVPLIAYMS-KFFTLKAGDVVLTGTPDG 196
Query: 295 PEPESLGCLLELTWNG 310
P G L +T++G
Sbjct: 197 VGPLQSGDELTVTFDG 212
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 29.2 bits (64), Expect = 0.73
Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 24/183 (13%)
Query: 128 PPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVP 187
PF + E E+A V+ I +E + I V+ + I+ W
Sbjct: 93 IIPFSRVLQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDW---- 147
Query: 188 LGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPA 247
I +D + A P A KN + + +
Sbjct: 148 ---------------SIQFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEV 192
Query: 248 GKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 307
W L +++A G LR+GD++ TG + + G E
Sbjct: 193 SSGRGSECLGHPLNAAVW-LARKMASL---GEPLRTGDIILTGALGPMVAVNAGDRFEAH 248
Query: 308 WNG 310
G
Sbjct: 249 IEG 251
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 28.4 bits (63), Expect = 1.3
Identities = 10/103 (9%), Positives = 24/103 (23%), Gaps = 12/103 (11%)
Query: 90 PANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVV-- 147
+ +P+ A +G + G P + + A V
Sbjct: 58 MQSETPVPV----YAGVHRFNGNGEMTGTHWIEDGGYFLGPVVITNTHGIGMAHHATVRW 113
Query: 148 -----GPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEY 185
+ + + + L ND + + +
Sbjct: 114 MVDRYASTYQTDDFLWIMPVVAETYDGAL-NDINGFPVTEADV 155
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 28.5 bits (63), Expect = 1.4
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 6 PNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDY 65
P++ S R W +AR+ L L N L Q SL + +Y
Sbjct: 225 PSIAALTSEERTRWAKAREYLISLDPENLTLLE----KIQTSLFVYSIEDSSPHATPEEY 280
Query: 66 TDFFSSMHH 74
+ F +
Sbjct: 281 SQVFEMLLG 289
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain
{Escherichia coli [TaxId: 562]}
Length = 133
Score = 27.3 bits (60), Expect = 1.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 59 PMEIGDYTDFFSSMHHAKNCG-TIFRGPAN 87
PME+ D D K+ +F GPAN
Sbjct: 2 PMELTDVADLL------KSVEFAVFAGPAN 25
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium
meliloti [TaxId: 382]}
Length = 79
Score = 25.5 bits (56), Expect = 2.8
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 151 NELGKPIDVNEAADHIFGVMLMNDW 175
G P+ E+ + ++G M +W
Sbjct: 54 EASGVPMSKEESREIVYG-MPYEEW 77
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 26.5 bits (57), Expect = 4.7
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 19/103 (18%)
Query: 164 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQ 223
I G + + +P K T +P++ + +
Sbjct: 171 IGITGWVCDERRGLELRELLPLIPAE----KLLIETDAPYL----LPRDLTPKPSSRRNE 222
Query: 224 P--LPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 264
P LP++ ++I+ T +N K L+
Sbjct: 223 PAHLPHILQRIAHWRGEDA---------AWLAATTDANVKTLF 256
>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 91
Score = 25.1 bits (55), Expect = 4.7
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 321 RKFLEDGDEVTFTGFCKG 338
+FLE+GD+ T +G
Sbjct: 26 IRFLEEGDKAKITLRFRG 43
>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin
beta {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 25.6 bits (56), Expect = 5.2
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 324 LEDGDEVTFTGFCKGNGYTVGFGTCSG 350
L + ++F C N G +C G
Sbjct: 57 LPEELSLSFNATCLNNEVIPGLKSCMG 83
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 26.0 bits (56), Expect = 6.7
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 4 WQPNLNKFLSLGRPAWKEARDMLQKLLSSN 33
W ++ RP + E + L LL +N
Sbjct: 274 WHGEPSQ-----RPTFSELVEHLGNLLQAN 298
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 109
Score = 25.2 bits (55), Expect = 7.0
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 282 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGD-EVTFTGFCK 337
++ D +G I E + + F + +DGD ++ F
Sbjct: 48 KAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFET 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.432
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,404,977
Number of extensions: 66219
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 17
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)