Query 018342
Match_columns 357
No_of_seqs 134 out of 1174
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00182 tatC Sec-independent 100.0 1.9E-61 4.1E-66 458.1 31.3 236 120-357 14-249 (249)
2 PRK10921 twin-arginine protein 100.0 8.6E-61 1.9E-65 455.7 29.6 232 125-357 4-238 (258)
3 COG0805 TatC Sec-independent p 100.0 1.1E-58 2.4E-63 439.6 27.5 234 123-357 3-242 (255)
4 TIGR01912 TatC-Arch Twin argin 100.0 5.6E-58 1.2E-62 431.6 29.5 228 130-357 2-237 (237)
5 TIGR00945 tatC Twin arginine t 100.0 3.5E-56 7.6E-61 413.4 26.5 215 130-345 1-215 (215)
6 PF00902 TatC: Sec-independent 100.0 1.5E-52 3.3E-57 387.9 24.4 209 131-340 1-215 (215)
7 TIGR01299 synapt_SV2 synaptic 93.7 5.6 0.00012 44.0 19.0 17 188-204 205-221 (742)
8 PF09586 YfhO: Bacterial membr 79.7 27 0.00058 38.5 12.9 68 187-259 176-243 (843)
9 COG3256 NorB Nitric oxide redu 70.7 39 0.00085 37.0 10.7 60 265-325 440-501 (717)
10 PRK10649 hypothetical protein; 62.0 2.3E+02 0.0051 30.6 15.1 17 191-207 47-63 (577)
11 PF10716 NdhL: NADH dehydrogen 49.0 1.1E+02 0.0023 25.1 7.3 57 232-291 16-72 (81)
12 PF03699 UPF0182: Uncharacteri 43.4 5.4E+02 0.012 29.2 17.6 35 132-166 95-129 (774)
13 PF06836 DUF1240: Protein of u 43.0 58 0.0013 27.2 5.1 47 197-243 11-57 (95)
14 TIGR01006 polys_exp_MPA1 polys 42.6 38 0.00083 31.3 4.5 33 124-156 4-36 (226)
15 COG2322 Predicted membrane pro 41.3 2.8E+02 0.006 25.8 9.5 61 180-241 108-168 (177)
16 PF07444 Ycf66_N: Ycf66 protei 39.1 1.4E+02 0.0031 24.4 6.7 44 194-243 9-53 (84)
17 PF08019 DUF1705: Domain of un 37.6 2.6E+02 0.0056 24.6 8.8 31 177-207 52-83 (156)
18 PF09726 Macoilin: Transmembra 34.2 2.8E+02 0.006 31.0 10.0 71 184-256 25-102 (697)
19 PF03574 Peptidase_S48: Peptid 33.5 34 0.00074 30.2 2.4 34 111-144 105-140 (149)
20 PRK02509 hypothetical protein; 27.4 1.1E+03 0.023 27.8 14.7 69 173-245 228-301 (973)
21 PF11712 Vma12: Endoplasmic re 25.8 3.8E+02 0.0083 23.3 7.8 69 124-214 62-133 (142)
22 PF03348 Serinc: Serine incorp 25.3 8E+02 0.017 25.6 12.6 113 233-350 31-157 (429)
23 PLN00174 predicted protein; Pr 25.2 1.5E+02 0.0033 27.1 5.1 29 190-218 72-101 (160)
24 TIGR02831 spo_II_M stage II sp 24.9 5.6E+02 0.012 23.7 12.1 111 229-345 14-141 (200)
25 PRK10381 LPS O-antigen length 24.4 2E+02 0.0043 29.4 6.5 36 123-158 22-57 (377)
26 KOG1304 Amino acid transporter 24.2 8.8E+02 0.019 25.7 14.9 42 178-219 310-352 (449)
27 PF05251 UPF0197: Uncharacteri 23.5 2.8E+02 0.0061 22.5 5.8 16 273-288 54-69 (77)
28 PRK13245 hetR heterocyst diffe 23.0 70 0.0015 31.1 2.6 37 111-147 158-196 (299)
29 COG4485 Predicted membrane pro 22.5 4E+02 0.0087 30.1 8.5 40 218-258 216-255 (858)
30 PF09581 Spore_III_AF: Stage I 21.6 28 0.00061 31.3 -0.2 26 301-327 13-38 (188)
31 PF00902 TatC: Sec-independent 21.3 6.6E+02 0.014 23.2 11.1 47 266-314 54-100 (215)
32 PRK09598 lipid A phosphoethano 21.2 2.3E+02 0.005 30.3 6.4 101 137-245 69-170 (522)
33 PRK00068 hypothetical protein; 20.4 1.4E+03 0.031 26.7 16.3 23 137-159 108-130 (970)
34 PF11833 DUF3353: Protein of u 20.2 2.8E+02 0.0061 25.8 6.1 62 217-287 132-193 (194)
No 1
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=100.00 E-value=1.9e-61 Score=458.14 Aligned_cols=236 Identities=53% Similarity=0.976 Sum_probs=226.5
Q ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccCceeeecCCChHHHHHHHHHHHHHHH
Q 018342 120 ELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLL 199 (357)
Q Consensus 120 ~~~~~d~em~L~eHL~ELR~RLi~~liaf~i~~iv~~~f~~~li~lL~~Pl~~~~~~fi~tsp~E~F~~~lkiSl~~gli 199 (357)
+..++|+|||+.||++|||+|+++++++++++++++|++++++++++.+|.. +.++++|+++|+|++++|+|+++|++
T Consensus 14 ~~~~~~~~~~l~~HL~ELR~Rli~~li~~~i~~~v~~~~~~~l~~~l~~p~~--~~~li~t~~~E~f~~~ikls~~~g~~ 91 (249)
T CHL00182 14 DIEDPDLEMPLSEHLEELRQRLFLSLSILLLLTIVCFINVKSIVEILQAPAK--GIKFLQLSPGEYFFSSIKISFYTGLL 91 (249)
T ss_pred ccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCceEEcCchHHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999999999999999999999999999974 45699999999999999999999999
Q ss_pred HhHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhccHHHHHHHHHHH
Q 018342 200 LGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVL 279 (357)
Q Consensus 200 ls~P~ilYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f~~~~i~~~~~I~~Yl~Fvl~l 279 (357)
+++|+++||+|+|++||||++|||+.++++..+.++|++|++|+|++++|.+++|+++++++++++.+++++|++|++++
T Consensus 92 ~a~P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f~~~~~~~~~~i~~Yl~f~~~~ 171 (249)
T CHL00182 92 ISSPFIIYQIILFILPGLTKKERKIILPLLISSLVLFGLGLIFAYFVLVPAALNFFINYGSDVVEPLWSFDQYFDFILVL 171 (249)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHhchhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018342 280 MFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 357 (357)
Q Consensus 280 ll~fGl~FqlPlI~~lL~~lGivs~~~l~k~RRy~iv~i~IiaAilTP~pDiiSQlllaiPLilLYEisi~I~k~~~r 357 (357)
++++|++||+|+++++|.+.|++++++++|+|||++++++++||++|||||++||+++|+||++|||+++++++++++
T Consensus 172 ~l~fGl~FelPvi~~~L~~~givs~~~L~~~Rr~~~v~~~i~aAiiTP~pD~~sqi~laiPl~lLYEisI~i~~~~~~ 249 (249)
T CHL00182 172 FFSTGLAFQIPIIQIVLGLLNIISSKQMLSAWRYVILVSTIVGAILTPSTDPLTQLLLSLAILLLYFSGVIVLKLLKK 249 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHhhCchHhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999889999999999999999999999998764
No 2
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=100.00 E-value=8.6e-61 Score=455.67 Aligned_cols=232 Identities=33% Similarity=0.609 Sum_probs=224.2
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccc---cCceeeecCCChHHHHHHHHHHHHHHHHh
Q 018342 125 DKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFFTTLKVSGYCGLLLG 201 (357)
Q Consensus 125 d~em~L~eHL~ELR~RLi~~liaf~i~~iv~~~f~~~li~lL~~Pl~~---~~~~fi~tsp~E~F~~~lkiSl~~glils 201 (357)
|++||++||++|||+|+++++++++++++++|++++++++++.+|+.. ++.++++|+++|+|++++|+|+++|++++
T Consensus 4 ~~~~~l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~l~~~l~~pl~~~~~~~~~li~t~~~e~f~~~lk~sl~~g~~la 83 (258)
T PRK10921 4 EDTQPLISHLIELRKRLLNCIIAVLVIFLALVYFANDIYHLVSAPLIKQLPQGATMIATDVASPFFTPIKLTFMVSLILS 83 (258)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeecCchHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999843 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhccHHHHHHHHHHHHH
Q 018342 202 SPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMF 281 (357)
Q Consensus 202 ~P~ilYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f~~~~i~~~~~I~~Yl~Fvl~lll 281 (357)
+|+++||+|+|++||||++|||+.++++..+.++|++|+.|+|++++|.+++|+++++++++++.+++++|++|++++++
T Consensus 84 ~P~ilyqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~y~~vlP~~~~Fl~~f~~~~~~~~~~i~~Y~~fv~~~~l 163 (258)
T PRK10921 84 APVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGVQVSTDIASYLSFVMALFM 163 (258)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHhchhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018342 282 STGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 357 (357)
Q Consensus 282 ~fGl~FqlPlI~~lL~~lGivs~~~l~k~RRy~iv~i~IiaAilTP~pDiiSQlllaiPLilLYEisi~I~k~~~r 357 (357)
++|++||+|+++++|++.|++++++++|+|||++++++++||++|| ||++||+++|+||++|||++++++++.+|
T Consensus 164 ~fGl~FelPli~~~L~~~giv~~~~l~~~Rr~~~v~~~iiaAiiTP-pD~isq~llaiPl~lLYEisI~i~~~~~~ 238 (258)
T PRK10921 164 AFGVSFEVPVAIVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTP-PDVFSQTLLAIPMYCLFEIGVFFSRFYVG 238 (258)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHhcCcHHhHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999 79999999999999999999999998654
No 3
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-58 Score=439.61 Aligned_cols=234 Identities=38% Similarity=0.680 Sum_probs=225.1
Q ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcccc-c---cC-ceeeecCCChHHHHHHHHHHHHH
Q 018342 123 PDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVK-S---EG-VRFLQLAPGEFFFTTLKVSGYCG 197 (357)
Q Consensus 123 ~~d~em~L~eHL~ELR~RLi~~liaf~i~~iv~~~f~~~li~lL~~Pl~-~---~~-~~fi~tsp~E~F~~~lkiSl~~g 197 (357)
.+|+++|+.||+.|||+|+.++++++++++.+++++.+++...+.+|+. . ++ .++++++|+|+|++++|+|+++|
T Consensus 3 ~~~~~~pl~~hL~eLr~rL~~~~~~~~v~f~~~~~~~~~l~~~l~~p~~~~~l~~~~~~li~~~p~e~~~~~ik~a~~~g 82 (255)
T COG0805 3 MVEELQPLIEHLIELRKRLLRILIAFIVAFLILFYFAKDLYELLVAPLTYAQLPEGAVELIATSPTEPFFTYIKLALFAG 82 (255)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccceeEEcCcHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999975 2 22 47999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchhhhccHHHHHHHH
Q 018342 198 LLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYA-EGVVESLWSIDQYFEFV 276 (357)
Q Consensus 198 lils~P~ilYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f~-~~~i~~~~~I~~Yl~Fv 276 (357)
+++++|+++||+|+|++||||+||||+.++++..+.+||++|++|+|++++|.+++|+.+++ ++++++.+++++|++|+
T Consensus 83 l~~a~P~i~yq~w~FiaPGLy~~Err~~~~~~~~s~~LF~~G~~faYfvv~P~~~~F~~~~~~~~~~~~~~~i~~y~~f~ 162 (255)
T COG0805 83 LLLALPVILYQLWAFIAPGLYKHERRLILPLLIPSFVLFLLGAAFAYFVVFPLVFKFLLSFAAPDGVSPALSISKYLSFV 162 (255)
T ss_pred HHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeeeecHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 56899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHhchhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018342 277 LVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTG 356 (357)
Q Consensus 277 l~lll~fGl~FqlPlI~~lL~~lGivs~~~l~k~RRy~iv~i~IiaAilTP~pDiiSQlllaiPLilLYEisi~I~k~~~ 356 (357)
+.++++||++||+|+++++|++.|++++++++++|||++++++++||++|| ||++||+++|+||++|||+|++++|+++
T Consensus 163 l~l~~~FGv~FElPvv~~~L~~~Giv~~~~L~~~rr~~iv~~fViaaviTP-pd~~sq~llaiPl~lLyElsi~~~r~~~ 241 (255)
T COG0805 163 LTLLLAFGVAFELPVVIVLLTRLGIVTPETLKKKRRYAIVAAFVIAAIITP-PDVLSQILLAIPLILLYELSILISRFVE 241 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHcCCeeeehHHHHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999999999987
Q ss_pred C
Q 018342 357 R 357 (357)
Q Consensus 357 r 357 (357)
|
T Consensus 242 ~ 242 (255)
T COG0805 242 K 242 (255)
T ss_pred c
Confidence 5
No 4
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=100.00 E-value=5.6e-58 Score=431.56 Aligned_cols=228 Identities=27% Similarity=0.478 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cchHHHHHHHhcccccc-----CceeeecCCChHHHHHHHHHHHHHHHHhH
Q 018342 130 IFDHLEELRQRIFVSVLAVGAAILGCF--AYSKELIMFLEAPVKSE-----GVRFLQLAPGEFFFTTLKVSGYCGLLLGS 202 (357)
Q Consensus 130 L~eHL~ELR~RLi~~liaf~i~~iv~~--~f~~~li~lL~~Pl~~~-----~~~fi~tsp~E~F~~~lkiSl~~glils~ 202 (357)
+.+|++|||+|+++++++++++++++| ++++++++++.+|+.+. +.++++++|+|+|++++|+|+++|+++++
T Consensus 2 ~~~Hl~ELR~Rli~~~i~~~~~~~~~~~~~~~~~i~~~l~~p~~~~~~~~~~~~li~~~~~e~f~~~lk~s~~~g~~~~~ 81 (237)
T TIGR01912 2 LLIALATFRLILLLVALAIVTGSVLGWLTIFTPFIIAALRESILPLLAYHVIATLIAPSPFAALELRIKSAFFIGLLLAS 81 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCceeEEcCchHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999 99999999999987432 34799999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhhhccHHHHHHHHHHHHH
Q 018342 203 PVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAE-GVVESLWSIDQYFEFVLVLMF 281 (357)
Q Consensus 203 P~ilYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f~~-~~i~~~~~I~~Yl~Fvl~lll 281 (357)
|+++||+|+|++||||++|||+.++++..+.++|++|++|+|++++|.+++|+.+++. .++++.+++++|++|++++++
T Consensus 82 P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~f~~~f~~~~~~~~~~~i~~Y~~f~~~~~~ 161 (237)
T TIGR01912 82 PVLAYEAYRFIKPALKPHERRQVRLLGVIAVGLFAFGALFAYWVIFPLIFQILFEFASPLGLSAIMDIRKYTSFALKLIL 161 (237)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccceeecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999975 468899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHhchhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018342 282 STGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 357 (357)
Q Consensus 282 ~fGl~FqlPlI~~lL~~lGivs~~~l~k~RRy~iv~i~IiaAilTP~pDiiSQlllaiPLilLYEisi~I~k~~~r 357 (357)
++|++||+|+++++|.+.|++++++++|+|||++++++++||++||+||++||+++|+||++|||++++++++.+|
T Consensus 162 ~fGl~FelPvv~~~L~~~giv~~~~l~~~rr~~~v~~~i~aAiiTP~pD~~sq~~laiPl~~LYeisi~i~~~~~k 237 (237)
T TIGR01912 162 SFGLAFETPVVLVFLTRLGVVSASTLVDYWRVIILVVLVFGAVITPDPDVVSMILLAIPLIALYGLALVISKRVEK 237 (237)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999999899999999999999999999999999876
No 5
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=100.00 E-value=3.5e-56 Score=413.36 Aligned_cols=215 Identities=57% Similarity=0.957 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccCceeeecCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018342 130 IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEI 209 (357)
Q Consensus 130 L~eHL~ELR~RLi~~liaf~i~~iv~~~f~~~li~lL~~Pl~~~~~~fi~tsp~E~F~~~lkiSl~~glils~P~ilYQl 209 (357)
++||++|||+|+++++++++++++++|++++++++++.+|....+.++++|+|+|+|++++|+|+++|+++++|+++||+
T Consensus 1 l~~Hl~ELR~Rl~~~~i~~~~~~~i~~~~~~~l~~~l~~p~~~~~~~li~t~~~e~f~~~lk~s~~~g~~~~~P~i~yqi 80 (215)
T TIGR00945 1 LFEHLEELRKRLLISLIAFLVAFFICFYFSKPIIELLQAPVLALGVTFIATSPTEPFFTYIKLSLIVGIILSSPVILYQI 80 (215)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEecCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999998766788999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhccHHHHHHHHHHHHHHHHHHHHH
Q 018342 210 IAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQV 289 (357)
Q Consensus 210 w~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f~~~~i~~~~~I~~Yl~Fvl~lll~fGl~Fql 289 (357)
|+|++||||++|||+.++++..+.++|++|++|+|++++|.+++|+.+++++++++.+++++|++|++++++++|++||+
T Consensus 81 w~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~F~~~~~~~~~~~~~~i~~y~~f~~~~~l~fGl~Fql 160 (215)
T TIGR00945 81 WAFILPGLYEHERRLLLPLLLGSILLFLAGLAFAYYVLFPAALNFLLTYGADVVEILLSIDQYFEFVLKLLFSFGVAFQV 160 (215)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHhchhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 018342 290 PVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLY 345 (357)
Q Consensus 290 PlI~~lL~~lGivs~~~l~k~RRy~iv~i~IiaAilTP~pDiiSQlllaiPLilLY 345 (357)
|+++.+|++.|++|+++++|+|||++++++++||++|| ||++||+++++||++||
T Consensus 161 Pli~~~l~~~giv~~~~l~~~Rr~~~~~~~i~aa~iTP-pD~~sq~~la~Pl~~LY 215 (215)
T TIGR00945 161 PVLQVLLGRLGIVTYEQLRSKRRYVIVGAFVIGAILTP-PDPLSQILLAIPLLLLY 215 (215)
T ss_pred HHHHHHHHHcCCCCHHHHHhhhHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999 89999999999999987
No 6
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=100.00 E-value=1.5e-52 Score=387.92 Aligned_cols=209 Identities=41% Similarity=0.728 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccC-----ceeeecCCChHHHHHHHHHHHHHHHHhHHHH
Q 018342 131 FDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEG-----VRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI 205 (357)
Q Consensus 131 ~eHL~ELR~RLi~~liaf~i~~iv~~~f~~~li~lL~~Pl~~~~-----~~fi~tsp~E~F~~~lkiSl~~glils~P~i 205 (357)
+||++|||+|+++++++++++++++|+++++++.++.+|+.+.. .++++|+|+|+|.+++|+|+++|+++++|++
T Consensus 1 ~~Hl~ELr~Rl~~~li~~~i~~~v~~~~~~~l~~~l~~p~~~~~~~~~~~~li~~~~~e~f~~~lk~s~~~~~~~~~P~~ 80 (215)
T PF00902_consen 1 WEHLEELRYRLIYSLISFIIAFIVCFWFSEELIYFLIKPLPQILPSQNSVKLIFTSPTEAFFTYLKLSFFLGLIISLPYI 80 (215)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccccccceEEECChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999987532 5899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-hhhhccHHHHHHHHHHHHHHHH
Q 018342 206 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGV-VESLWSIDQYFEFVLVLMFSTG 284 (357)
Q Consensus 206 lYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f~~~~-i~~~~~I~~Yl~Fvl~lll~fG 284 (357)
+||+|+|++||||++|||+.++++..++++|++|+.|+|++++|.+++|+++++.++ +++++++++|++|++++++++|
T Consensus 81 ~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~~~~~~~~~~i~~y~~f~~~~~~~~g 160 (215)
T PF00902_consen 81 LYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSPTSGIQPEPSISSYLNFVIQFLLIFG 160 (215)
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765 4999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHhchhHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 018342 285 LSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAP 340 (357)
Q Consensus 285 l~FqlPlI~~lL~~lGivs~~~l~k~RRy~iv~i~IiaAilTP~pDiiSQlllaiP 340 (357)
++||+|+++++|.+.|++++++++|+|||++++++++||++|| ||++||+++++|
T Consensus 161 l~FqlPli~~~L~~~giv~~~~l~~~rr~~~~~~~iiaa~itP-pD~~sql~l~iP 215 (215)
T PF00902_consen 161 LIFQLPLIMFFLVRLGIVSPKFLRKYRRYAYFGIFIIAAFITP-PDPISQLLLAIP 215 (215)
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHhhhHHHHHHHHHHHHhcC-chHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999 899999999987
No 7
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=93.69 E-value=5.6 Score=44.03 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhHHH
Q 018342 188 TTLKVSGYCGLLLGSPV 204 (357)
Q Consensus 188 ~~lkiSl~~glils~P~ 204 (357)
..+..+.++|.++..++
T Consensus 205 g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 205 GMLGLIVYLGMMVGAFF 221 (742)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555554
No 8
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=79.73 E-value=27 Score=38.53 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018342 187 FTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYA 259 (357)
Q Consensus 187 ~~~lkiSl~~glils~P~ilYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f~ 259 (357)
...+-.+++.|...++-.++|-+++++. ++.|+..+.+. -..+-.++|+..+=++++|.+..++.+-.
T Consensus 176 ~l~~i~nfYf~ym~~if~~iY~~~r~~~----~~~k~~~~~~~-~~~~~~ilg~~lsa~~llP~~~~~l~~~r 243 (843)
T PF09586_consen 176 ALALISNFYFAYMICIFLVIYFLIRYFF----KNWKNFFKKIL-RFIGSSILGVGLSAFLLLPTILSLLQSKR 243 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344566777777777777787777762 55555554444 33455667888888899999999887643
No 9
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=70.74 E-value=39 Score=37.03 Aligned_cols=60 Identities=15% Similarity=0.326 Sum_probs=48.3
Q ss_pred hhccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhCCCCHHHHHhchhHHHHHHHHHHhhc
Q 018342 265 SLWSIDQYFEFVLVLMF--STGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVL 325 (357)
Q Consensus 265 ~~~~I~~Yl~Fvl~lll--~fGl~FqlPlI~~lL~~lGivs~~~l~k~RRy~iv~i~IiaAil 325 (357)
..+++++|..+.+-=+. +|-=++-.|++.+++.++|.|+++ ...++-|+..++.+++.++
T Consensus 440 ~n~t~dey~rWwvVHlwVEGfwe~i~~~ilafLlv~lg~V~rs-~a~~a~~v~~~l~l~sGii 501 (717)
T COG3256 440 TNLAVDEYWRWWVVHLWVEGFWEVIATAILAFLLVKLGGVDRS-VAEKALYVIAALALFSGII 501 (717)
T ss_pred CCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCcCHH-HHHHHHHHHHHHHHHcCcc
Confidence 45789999987765443 344468899999999999999998 6677888988888888876
No 10
>PRK10649 hypothetical protein; Provisional
Probab=62.02 E-value=2.3e+02 Score=30.56 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHHHHHH
Q 018342 191 KVSGYCGLLLGSPVILY 207 (357)
Q Consensus 191 kiSl~~glils~P~ilY 207 (357)
.=+++++.+...|++++
T Consensus 47 ~~~~~~~~~~~~~~~l~ 63 (577)
T PRK10649 47 RDALLFSSLWLIPVFLF 63 (577)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666777767776655
No 11
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=49.02 E-value=1.1e+02 Score=25.05 Aligned_cols=57 Identities=30% Similarity=0.499 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 018342 232 SSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPV 291 (357)
Q Consensus 232 s~~LF~lGv~F~YfvIlP~~l~Fll~f~~~~i~~~~~I~~Yl~Fvl~lll~fGl~FqlPl 291 (357)
.+++-++++.+.|.+++|.++-+=++-. -...=+++.++.+.+.+++.-|+..--|.
T Consensus 16 ~vl~~y~~l~~~YLlVvP~~l~~wm~~R---Wy~~~~~Er~~~y~lvF~FFPGllL~aPF 72 (81)
T PF10716_consen 16 LVLLAYAALAGLYLLVVPLILYFWMNKR---WYVMSSFERLFMYFLVFLFFPGLLLLAPF 72 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 4556678899999999999987655421 11223677777777766665565555443
No 12
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=43.36 E-value=5.4e+02 Score=29.19 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 018342 132 DHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFL 166 (357)
Q Consensus 132 eHL~ELR~RLi~~liaf~i~~iv~~~f~~~li~lL 166 (357)
.+..+-+.|.+...++++++++++...+.+.-.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~L 129 (774)
T PF03699_consen 95 RELIEPRRRWVIIGVSLVLGLFAGLSASSQWETIL 129 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44556666777777778888777777666554444
No 13
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=42.99 E-value=58 Score=27.20 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018342 197 GLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFS 243 (357)
Q Consensus 197 glils~P~ilYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~ 243 (357)
-++.++|+++|-...++.-....++.|.-.++.-....+.++|..++
T Consensus 11 i~~~~~Pll~Y~~~~~~~~~i~~~~~k~n~~i~~~l~~i~I~~~IlS 57 (95)
T PF06836_consen 11 ILIFSSPLLFYFSYLSFFSFIKNKPPKFNNKIVKYLAIIAIISFILS 57 (95)
T ss_pred hhhhhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 36778999999998887777777766655554433333333444333
No 14
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=42.57 E-value=38 Score=31.29 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=26.4
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018342 124 DDKEMSIFDHLEELRQRIFVSVLAVGAAILGCF 156 (357)
Q Consensus 124 ~d~em~L~eHL~ELR~RLi~~liaf~i~~iv~~ 156 (357)
++.++++.+.+..+|+|...++++++++.++++
T Consensus 4 ~~~~i~l~~l~~~l~r~~~~ill~~ll~~~~a~ 36 (226)
T TIGR01006 4 ENTEIDLLQLLKKLWKRKLLILIVALIFLIISF 36 (226)
T ss_pred ccceecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999988887777666554
No 15
>COG2322 Predicted membrane protein [Function unknown]
Probab=41.29 E-value=2.8e+02 Score=25.81 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=40.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHH
Q 018342 180 LAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIA 241 (357)
Q Consensus 180 tsp~E~F~~~lkiSl~~glils~P~ilYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~ 241 (357)
+++.-.....+.++=..=..++.|+.+|++|.=.+ +.|++.||+.+--...-+.-++.|+.
T Consensus 108 ~G~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~-~~~~rHrki~r~ta~~Wlyva~tGv~ 168 (177)
T COG2322 108 TGIYKGIYFFILITHIILAAINVPLALYALILAWK-GLYERHRKIGRWTAPLWLYVALTGVV 168 (177)
T ss_pred CeeeehHHHHHHHHHHHHHHHhhhHHHHHHHHHhc-chhhhhheeeehhhHHHHHHHHHHHH
Confidence 33333333333444444456789999999998775 67888898877766666666777764
No 16
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=39.14 E-value=1.4e+02 Score=24.41 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=26.9
Q ss_pred HHHHHHHhHH-HHHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018342 194 GYCGLLLGSP-VILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFS 243 (357)
Q Consensus 194 l~~glils~P-~ilYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~ 243 (357)
.++|+.+..- ..+| .-+|+.|.+++++-.++ .++.+++.++++.
T Consensus 9 ~iLgi~l~~~~~~Ly-~lr~~~Pev~Rd~D~~f-----s~vgLl~g~IL~~ 53 (84)
T PF07444_consen 9 YILGIILILGGLALY-FLRFFRPEVSRDYDIFF-----SSVGLLYGLILWF 53 (84)
T ss_pred HHHHHHHHHHHHHHH-HHHHHCcchhhhhhHHH-----HHHHHHHHHHHHH
Confidence 3344444433 3344 46999999999988654 4556666555444
No 17
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=37.59 E-value=2.6e+02 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.136 Sum_probs=22.8
Q ss_pred eeecCCChHH-HHHHHHHHHHHHHHhHHHHHH
Q 018342 177 FLQLAPGEFF-FTTLKVSGYCGLLLGSPVILY 207 (357)
Q Consensus 177 fi~tsp~E~F-~~~lkiSl~~glils~P~ilY 207 (357)
...|++.|+. ....+...++.+....|.++.
T Consensus 52 v~eTn~~Ea~ells~~~~~~~l~~~vlP~~~l 83 (156)
T PF08019_consen 52 VFETNTAEASELLSWKLILWLLLLGVLPALLL 83 (156)
T ss_pred HHHcCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5668888875 345677788888888887766
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.22 E-value=2.8e+02 Score=30.98 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018342 184 EFFFTTLKVSGYCGLLLGSPVI-------LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFV 256 (357)
Q Consensus 184 E~F~~~lkiSl~~glils~P~i-------lYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll 256 (357)
...+.|+|+-+.+++++..=++ +|=.|.|+.. .|..=|.-.+.|-++.+++-+..=++||+ ++|.-|=||.
T Consensus 25 ~~~~~~~~~~~~w~~~~~~d~~~~~r~e~~~p~wl~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~p~~~~~~~ 102 (697)
T PF09726_consen 25 GSTFLYVKFLLVWALVLLADFMLEFRFEYLWPFWLLLRS-VYDSFKYQGLAFSVFFVCIAFTSDLICLF-FIPVHWLFFA 102 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4468999999999999888765 5777888764 33332222222222222222233456776 5688887775
No 19
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=33.46 E-value=34 Score=30.21 Aligned_cols=34 Identities=32% Similarity=0.589 Sum_probs=19.7
Q ss_pred CccccCCCC-CCCCCCcCCCHHHHHHH-HHHHHHHH
Q 018342 111 LYNFLYPDK-ELLPDDKEMSIFDHLEE-LRQRIFVS 144 (357)
Q Consensus 111 ~~~~~~~~~-~~~~~d~em~L~eHL~E-LR~RLi~~ 144 (357)
+..|++... |+.|.+++|+|.|-+.| +|+|++++
T Consensus 105 liefLH~rsQe~lp~~rr~~LSeAlAeHIkRRLlys 140 (149)
T PF03574_consen 105 LIEFLHRRSQEDLPPERRMPLSEALAEHIKRRLLYS 140 (149)
T ss_dssp HHHHHHHHHHTTS-TTT-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhCCccccCcHHHHHHHHHHHHHhhc
Confidence 445565433 78899999999887754 68899886
No 20
>PRK02509 hypothetical protein; Provisional
Probab=27.40 E-value=1.1e+03 Score=27.75 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=33.6
Q ss_pred cCceeeecCC--ChHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018342 173 EGVRFLQLAP--GEFFFTTLKVSGYCGLLLGSPVILYEIIAF---VLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYW 245 (357)
Q Consensus 173 ~~~~fi~tsp--~E~F~~~lkiSl~~glils~P~ilYQlw~F---I~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~Yf 245 (357)
.+..|..... .+.+...+...++++++.+.=..++.-... -.|++.+..|+.+..... ++.+..+++|+
T Consensus 228 ~DisFYvF~LPf~~~l~~~l~~~~~~~li~~~~~Yl~~~~~l~~g~~~~~s~~ar~hL~~L~a----~~~ll~A~~yw 301 (973)
T PRK02509 228 RDISFYIFQLPLWELLEFWLMGLFLYGFIAVTLTYLLSADSLSQGKFPGFSRQQLRHLYGLGG----ALMLTLALSHW 301 (973)
T ss_pred CCcEEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCccccCCHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3444544432 344444455555555555544434432222 126777778877543332 33444445554
No 21
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=25.83 E-value=3.8e+02 Score=23.28 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=39.9
Q ss_pred CCcCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHhcchHHHHHHHhccccccCceeeecCCChHHHHHHHHHHHHHHHH
Q 018342 124 DDKEMSIFDHLEELRQRIFV---SVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLL 200 (357)
Q Consensus 124 ~d~em~L~eHL~ELR~RLi~---~liaf~i~~iv~~~f~~~li~lL~~Pl~~~~~~fi~tsp~E~F~~~lkiSl~~glil 200 (357)
++.+-++.++..+.++.+.. ++++++.++...|++..... ...-....+ ++|+++
T Consensus 62 ~~~~~t~~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~------------------~~~~~~~Rv----llgl~~ 119 (142)
T PF11712_consen 62 DEPEDTPAQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSF------------------GGWSFPYRV----LLGLFG 119 (142)
T ss_pred cCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------cccchHHHH----HHHHHH
Confidence 34456788999999988754 45566666655554443322 001122333 355555
Q ss_pred hHHHHHHHHHHHHc
Q 018342 201 GSPVILYEIIAFVL 214 (357)
Q Consensus 201 s~P~ilYQlw~FI~ 214 (357)
++=+.+-++|.|+.
T Consensus 120 al~vlvAEv~l~~~ 133 (142)
T PF11712_consen 120 ALLVLVAEVVLYIR 133 (142)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566777777765
No 22
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=25.30 E-value=8e+02 Score=25.65 Aligned_cols=113 Identities=15% Similarity=0.232 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHhc
Q 018342 233 SVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFE--FVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSI 310 (357)
Q Consensus 233 ~~LF~lGv~F~YfvIlP~~l~Fll~f~~~~i~~~~~I~~Yl~--Fvl~lll~fGl~FqlPlI~~lL~~lGivs~~~l~k~ 310 (357)
.++|+++.++++...-|..-+-+....+.-....=+-++-+. -+.++.++.++.|-+=.++ ..|+=+.+..|..
T Consensus 31 a~~~l~~~i~a~i~~~~~~~~~l~~~~~~~~~~~C~~~~c~G~~aVyRvsfal~~Ff~l~~l~----~i~v~~~~d~Ra~ 106 (429)
T PF03348_consen 31 ALIFLLGTILAWIMLSPGVESKLKKKIPWFCGFDCPSDSCVGYSAVYRVSFALALFFFLMALL----TIGVKSSRDPRAA 106 (429)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCCcchHHhhhhHHHHHHHHHHHHHHHHHHHH----HhhcCCCccHHHH
Confidence 355678888898888888888776622111100000223322 2344455554544422222 2333343333332
Q ss_pred -----h--hHHHHHHHHHHhhcCCCCCHHHHHH-----HHHHHHHHHHHHHH
Q 018342 311 -----W--RYVVVGAVIAAAVLTPSTDPVTQML-----LAAPLLGLYFGGAW 350 (357)
Q Consensus 311 -----R--Ry~iv~i~IiaAilTP~pDiiSQll-----laiPLilLYEisi~ 350 (357)
| |+++++.++++++.-|+ +.+.+.- ++..+.++.++.++
T Consensus 107 ihng~W~~K~l~l~~l~v~~FfiP~-~~f~~~~~~v~~~ga~~FiliQlIlL 157 (429)
T PF03348_consen 107 IHNGFWFLKFLLLIGLIVGAFFIPN-GSFINVYMYVARVGAFIFILIQLILL 157 (429)
T ss_pred HHHhhHHHHHHHHHHHHheeEEeCc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 89999999999999995 5666553 23344444454443
No 23
>PLN00174 predicted protein; Provisional
Probab=25.18 E-value=1.5e+02 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHc-CCCC
Q 018342 190 LKVSGYCGLLLGSPVILYEIIAFVL-PGLT 218 (357)
Q Consensus 190 lkiSl~~glils~P~ilYQlw~FI~-PgLy 218 (357)
+--.=|..+++..|++.|++|.+.. |+++
T Consensus 72 LltG~W~~fLLNlPll~Yhv~~y~~r~hL~ 101 (160)
T PLN00174 72 VIRGWWIVGFLNFPFIFYNFAQWYEGKHQL 101 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4445577889999999999999875 4444
No 24
>TIGR02831 spo_II_M stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M.
Probab=24.92 E-value=5.6e+02 Score=23.69 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHH----H----HHHhhccccc-hhh-hccHHHHHHHHHH--HHHHHHHH-HHHHHH
Q 018342 229 VLGSSVLFYAGIAFSYWVLT---PAA----L----NFFVNYAEGV-VES-LWSIDQYFEFVLV--LMFSTGLS-FQVPVI 292 (357)
Q Consensus 229 l~~s~~LF~lGv~F~YfvIl---P~~----l----~Fll~f~~~~-i~~-~~~I~~Yl~Fvl~--lll~fGl~-FqlPlI 292 (357)
.....++|+.|..+|+..+- |.- . +|+...+.+. ..+ ..=.+.+.+-... ++...|+. +=+|.+
T Consensus 14 y~~~l~lF~~G~i~G~~~v~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~f~~if~nn~~~~~li~~lGl~~~Gip~i 93 (200)
T TIGR02831 14 YIFVLLLFLVGIVFGAYTVNSMSIVQKNDLYFYLSNFFGQLSGGNSASYGDIFRQSLFNNIKYVGLMWILGLSIIGLPII 93 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34456789999999987742 211 1 2332222111 111 1111222222211 23346775 888998
Q ss_pred HHHHHhhCCCCHHHHHhch-hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 018342 293 QLLLGQVGLVTSDQMLSIW-RYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLY 345 (357)
Q Consensus 293 ~~lL~~lGivs~~~l~k~R-Ry~iv~i~IiaAilTP~pDiiSQlllaiPLilLY 345 (357)
...+...|++-.-...... ++-.-++....+-+.| |-++-+|.+++-
T Consensus 94 ~~~l~~nGf~~Gf~v~~~v~~~g~~G~l~~l~~ilP------q~I~~IPa~lia 141 (200)
T TIGR02831 94 LILDFLKGFVVGFTVGFLVNQLGMKGVLLAFLGVLP------QNLIIIPGILIA 141 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHcc------HHHHHHHHHHHH
Confidence 8866656665543222211 1111222222222346 666667766553
No 25
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=24.42 E-value=2e+02 Score=29.45 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=26.5
Q ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018342 123 PDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAY 158 (357)
Q Consensus 123 ~~d~em~L~eHL~ELR~RLi~~liaf~i~~iv~~~f 158 (357)
+++.|..+.+.+.-|+++-..++++.+++++++..+
T Consensus 22 ~~~~eidl~~ll~~L~r~k~~Il~~~~~~~~~g~~y 57 (377)
T PRK10381 22 PSNNEIDLFELISVLWKAKKTIIAITFAFACAGLLI 57 (377)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999888777766666665555433
No 26
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=24.16 E-value=8.8e+02 Score=25.75 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=34.7
Q ss_pred eecC-CChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCH
Q 018342 178 LQLA-PGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTR 219 (357)
Q Consensus 178 i~ts-p~E~F~~~lkiSl~~glils~P~ilYQlw~FI~PgLy~ 219 (357)
+.++ |.|.+...+|+-+.++++++.|+=+|=...=+.|++.+
T Consensus 310 ITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~ 352 (449)
T KOG1304|consen 310 ITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRK 352 (449)
T ss_pred EEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHH
Confidence 4443 56899999999999999999999999888888876443
No 27
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=23.55 E-value=2.8e+02 Score=22.46 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 018342 273 FEFVLVLMFSTGLSFQ 288 (357)
Q Consensus 273 l~Fvl~lll~fGl~Fq 288 (357)
+..+-.+.++||..|.
T Consensus 54 ~a~vAS~flGfG~lFL 69 (77)
T PF05251_consen 54 IALVASLFLGFGSLFL 69 (77)
T ss_pred HHHHHHHHHhHHHHHH
Confidence 3444555566666554
No 28
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=22.98 E-value=70 Score=31.12 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=28.3
Q ss_pred CccccCCCC-CCCCCCcCCCHHHHHHH-HHHHHHHHHHH
Q 018342 111 LYNFLYPDK-ELLPDDKEMSIFDHLEE-LRQRIFVSVLA 147 (357)
Q Consensus 111 ~~~~~~~~~-~~~~~d~em~L~eHL~E-LR~RLi~~lia 147 (357)
+..|++... |+.|++++|||.|-|.| +|+|++++-.+
T Consensus 158 LiefLh~rsQed~p~~rrmpLSeAlaEHIkRRLlysgTV 196 (299)
T PRK13245 158 LIEFLHKRSQEDLPPEHRMPLSEALAEHIKRRLLYSGTV 196 (299)
T ss_pred HHHHHHHhhhhcCChhccCchHHHHHHHHHHHHhhccce
Confidence 456666543 78999999999988855 78899998653
No 29
>COG4485 Predicted membrane protein [Function unknown]
Probab=22.51 E-value=4e+02 Score=30.15 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=25.9
Q ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018342 218 TRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNY 258 (357)
Q Consensus 218 y~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f 258 (357)
-++|++....++-..+.-+++|..=+ -.++|..++++.+-
T Consensus 216 ~~~~~~~~~~i~~f~v~s~~a~~aS~-l~~Lp~~~dl~t~~ 255 (858)
T COG4485 216 ERDEKKRWIDIVDFTVSSICAGLASA-LMVLPTVFDLFTHG 255 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCC
Confidence 35666666666665555566555433 35889999988764
No 30
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=21.55 E-value=28 Score=31.29 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=17.1
Q ss_pred CCCHHHHHhchhHHHHHHHHHHhhcCC
Q 018342 301 LVTSDQMLSIWRYVVVGAVIAAAVLTP 327 (357)
Q Consensus 301 ivs~~~l~k~RRy~iv~i~IiaAilTP 327 (357)
+++...++||=|+ +++++++.++++|
T Consensus 13 LlP~~~~kkYvr~-v~GLili~~il~P 38 (188)
T PF09581_consen 13 LLPNSKYKKYVRF-VLGLILILAILSP 38 (188)
T ss_pred hCCchhHHHHHHH-HHHHHHHHHHHHH
Confidence 5555655554443 5677777888888
No 31
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=21.29 E-value=6.6e+02 Score=23.21 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=34.8
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHhchhHH
Q 018342 266 LWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYV 314 (357)
Q Consensus 266 ~~~I~~Yl~Fvl~lll~fGl~FqlPlI~~lL~~lGivs~~~l~k~RRy~ 314 (357)
..++.|=+..-+++.+..|+..-+|+++.-+.. .+.|..-++.||++
T Consensus 54 ~~~~~e~f~~~lk~s~~~~~~~~~P~~~yq~w~--Fi~PgL~~~Er~~~ 100 (215)
T PF00902_consen 54 FTSPTEAFFTYLKLSFFLGLIISLPYILYQIWA--FIAPGLYKHERRFF 100 (215)
T ss_pred ECChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcccccHHHHHHH
Confidence 357888888889999999999999999887765 35554444445543
No 32
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=21.20 E-value=2.3e+02 Score=30.32 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccCceeeecCCChHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Q 018342 137 LRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFF-FTTLKVSGYCGLLLGSPVILYEIIAFVLP 215 (357)
Q Consensus 137 LR~RLi~~liaf~i~~iv~~~f~~~li~lL~~Pl~~~~~~fi~tsp~E~F-~~~lkiSl~~glils~P~ilYQlw~FI~P 215 (357)
+++|+.+.+.++++.....-.|.-.....+...---++ ...|++.|+. ....++.+++.++..+|.++ |..+++
T Consensus 69 ~~~~~~k~~~~~l~~~~a~~~yf~~~ygv~id~~mi~n--v~~T~~~Ea~~~~~~~~~~~~~~l~~lp~~~---~~~~~~ 143 (522)
T PRK09598 69 LSRRLMRLSAIVFSLLNSIAFYFINTYKVFLNKSMMGN--VLNTNTAESSGFLSVKLFIYIVVLGVLPGYI---IYKIPL 143 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCeecHHHHHH--HHhCCHHHHHHhcCHHHHHHHHHHHHHHHHH---HHHhcc
Q ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018342 216 GLTRAERRFLGPIVLGSSVLFYAGIAFSYW 245 (357)
Q Consensus 216 gLy~~Erk~~~~~l~~s~~LF~lGv~F~Yf 245 (357)
.-.+.-++. ......++.++++++.++
T Consensus 144 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 170 (522)
T PRK09598 144 KNSSKKAPF---AAILALVLIFLASAFANS 170 (522)
T ss_pred ccccHHHHH---HHHHHHHHHHHHHHHHhc
No 33
>PRK00068 hypothetical protein; Validated
Probab=20.43 E-value=1.4e+03 Score=26.75 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcch
Q 018342 137 LRQRIFVSVLAVGAAILGCFAYS 159 (357)
Q Consensus 137 LR~RLi~~liaf~i~~iv~~~f~ 159 (357)
-|+|++.+.++++++++......
T Consensus 108 ~~~~~~~~~i~~~~gl~~g~~~~ 130 (970)
T PRK00068 108 KRLRLFLIGIPSFIGLLAGIFAQ 130 (970)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455566666665555544333
No 34
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.24 E-value=2.8e+02 Score=25.85 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhccHHHHHHHHHHHHHHHHHHH
Q 018342 217 LTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSF 287 (357)
Q Consensus 217 Ly~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f~~~~i~~~~~I~~Yl~Fvl~lll~fGl~F 287 (357)
++++|+++.+.+. .+++.+.+|..+|..+. +.+-. ..+...++.+...+.+..++++.+-.|
T Consensus 132 l~~K~~~~~rA~~-~~~~~L~~G~~lGs~l~-~~l~~-------~~~p~~~s~~~~~sl~~~i~lwl~s~f 193 (194)
T PF11833_consen 132 LNRKERKLGRAFL-WTLGGLVVGLILGSLLA-SWLPV-------DIVPGPWSPEQLVSLFTYILLWLVSLF 193 (194)
T ss_pred HHHhcchHHHHHH-HHHHHHHHHHHHHHHHH-hhccc-------ccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4577888766544 45666788988887642 22211 112245677777777777777766554
Done!