Query 018342
Match_columns 357
No_of_seqs 134 out of 1174
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4a_A TATC, SEC-independent p 100.0 6.1E-61 2.1E-65 453.3 22.0 227 128-357 1-232 (249)
2 4ea3_A Fusion protein of nocic 84.4 28 0.00096 32.9 15.7 21 282-302 293-313 (434)
3 2l0e_A Sodium/hydrogen exchang 59.3 3.7 0.00013 26.9 1.4 19 318-337 6-24 (33)
4 3odu_A C-X-C chemokine recepto 18.7 5.2E+02 0.018 24.0 9.4 19 283-301 214-232 (502)
5 4dkl_A MU-type opioid receptor 13.8 5.3E+02 0.018 23.5 8.0 19 282-300 185-203 (464)
6 3ukx_C Bimax2 peptide; arm rep 10.1 1E+02 0.0036 18.9 1.1 12 61-72 14-25 (28)
7 3qoe_A Heterocyst differentiat 9.7 43 0.0015 31.2 -1.1 34 112-145 162-197 (302)
8 2ab3_A ZNF29; zinc finger prot 9.6 1.1E+02 0.0038 16.3 1.1 14 4-17 16-29 (29)
9 1sp2_A SP1F2; zinc finger, tra 9.5 97 0.0033 17.2 0.8 14 4-17 16-29 (31)
10 4b4a_A TATC, SEC-independent p 9.4 9.6E+02 0.033 21.7 8.0 32 267-298 55-86 (249)
No 1
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=100.00 E-value=6.1e-61 Score=453.26 Aligned_cols=227 Identities=34% Similarity=0.605 Sum_probs=214.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccc---cCceeeecCCChHHHHHHHHHHHHHHHHhHHH
Q 018342 128 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPV 204 (357)
Q Consensus 128 m~L~eHL~ELR~RLi~~liaf~i~~iv~~~f~~~li~lL~~Pl~~---~~~~fi~tsp~E~F~~~lkiSl~~glils~P~ 204 (357)
||+.|||+|||+|+++++++++++++++|++++++++++.+|+.. ++ ++++|+|+|+|++++|+|+++|+++++|+
T Consensus 1 m~l~~HL~ELR~Rli~~~i~~~v~~~~~~~~~~~i~~~l~~P~~~~~~~~-~li~t~~~e~f~~~lkvs~~~g~~~a~P~ 79 (249)
T 4b4a_A 1 MPLTEHLRELRYRLIISIIAFLIGSGIAFYFAKYVFEILKEPILKSYPEV-ELITLSPTEPLFILIKISLAVGFIIASPV 79 (249)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTS-CEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-CeeecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999863 23 89999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhc--cHHHHHHHHHHHHHH
Q 018342 205 ILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLW--SIDQYFEFVLVLMFS 282 (357)
Q Consensus 205 ilYQlw~FI~PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvIlP~~l~Fll~f~~~~i~~~~--~I~~Yl~Fvl~lll~ 282 (357)
++||+|+|++||||+||||+..+++..+.++|++|++|+|++++|.+++|+.+++++++++++ ++++|++|+++++++
T Consensus 80 ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~ 159 (249)
T 4b4a_A 80 ILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVA 159 (249)
T ss_dssp HHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888877 999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHhchhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018342 283 TGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 357 (357)
Q Consensus 283 fGl~FqlPlI~~lL~~lGivs~~~l~k~RRy~iv~i~IiaAilTP~pDiiSQlllaiPLilLYEisi~I~k~~~r 357 (357)
+|++||+|+++++|++.|++++++++|+|||++++++++||++|| |++||+++|+||++|||++++++++++|
T Consensus 160 fGl~FelPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiTP--D~~sq~llaiPl~lLYEisi~i~~~~~~ 232 (249)
T 4b4a_A 160 FGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIAP--DVSTQVLMAIPLLLLYEISIFLGKLATR 232 (249)
T ss_dssp HHHHTSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999998765
No 2
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=84.38 E-value=28 Score=32.91 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCC
Q 018342 282 STGLSFQVPVIQLLLGQVGLV 302 (357)
Q Consensus 282 ~fGl~FqlPlI~~lL~~lGiv 302 (357)
.+.+.+.+|++++......++
T Consensus 293 ~~~~~~~ip~~ii~~~y~~I~ 313 (434)
T 4ea3_A 293 IFLFSFIVPVLVISVCYSLMI 313 (434)
T ss_dssp HHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667788877776655443
No 3
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=59.28 E-value=3.7 Score=26.87 Aligned_cols=19 Identities=16% Similarity=0.518 Sum_probs=15.5
Q ss_pred HHHHHhhcCCCCCHHHHHHH
Q 018342 318 AVIAAAVLTPSTDPVTQMLL 337 (357)
Q Consensus 318 i~IiaAilTP~pDiiSQlll 337 (357)
.+++||+++| +|+++.+-+
T Consensus 6 ~llfGAiis~-TDpVavlai 24 (33)
T 2l0e_A 6 NLLFGSIISA-VDPVAVLAV 24 (33)
T ss_dssp CCTTHHHHTT-CCHHHHHHH
T ss_pred HHHHHHHccC-CChHHHHHH
Confidence 3578999999 699987765
No 4
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=18.72 E-value=5.2e+02 Score=24.01 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q 018342 283 TGLSFQVPVIQLLLGQVGL 301 (357)
Q Consensus 283 fGl~FqlPlI~~lL~~lGi 301 (357)
+.+.|.+|+++++.....+
T Consensus 214 ~~~~~~~p~~ii~~~y~~I 232 (502)
T 3odu_A 214 IMVGLILPGIVILSCYCII 232 (502)
T ss_dssp HHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456778888777665544
No 5
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=13.77 E-value=5.3e+02 Score=23.53 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 018342 282 STGLSFQVPVIQLLLGQVG 300 (357)
Q Consensus 282 ~fGl~FqlPlI~~lL~~lG 300 (357)
.+.+.|-+|++++......
T Consensus 185 ~~~~~~~~p~~ii~~~y~~ 203 (464)
T 4dkl_A 185 VFIFAFIMPVLIITVCYGL 203 (464)
T ss_dssp HHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445678888777766543
No 6
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=10.08 E-value=1e+02 Score=18.94 Aligned_cols=12 Identities=25% Similarity=0.208 Sum_probs=6.4
Q ss_pred eecCCcccccCC
Q 018342 61 AFDGDDARDNQP 72 (357)
Q Consensus 61 ~~~~~~~~~~~~ 72 (357)
-+|||++..|.+
T Consensus 14 wdddddppkkrr 25 (28)
T 3ukx_C 14 WDDDDDPPKKRR 25 (28)
T ss_dssp CCCSSSCCSCCC
T ss_pred cccCCCchhhhh
Confidence 355666655543
No 7
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=9.68 E-value=43 Score=31.24 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=23.9
Q ss_pred ccccCCC-CCCCCCCcCCCHHHHHHH-HHHHHHHHH
Q 018342 112 YNFLYPD-KELLPDDKEMSIFDHLEE-LRQRIFVSV 145 (357)
Q Consensus 112 ~~~~~~~-~~~~~~d~em~L~eHL~E-LR~RLi~~l 145 (357)
..|++.. .|+.|++++|||.|-|.| +|+|++++-
T Consensus 162 iefLh~rsQed~~~~rrmpLSeAlaEHIkRRL~ysg 197 (302)
T 3qoe_A 162 IEFLHKRSQEDLPKEHQMPLSEALAEHIKRRLLYSG 197 (302)
T ss_dssp HHHHHHHHHHSSCTTTCCCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHhhhhcCChhccCchHHHHHHHHHHHHhhcc
Confidence 3455543 278889999998887754 688888764
No 8
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=9.60 E-value=1.1e+02 Score=16.27 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=10.0
Q ss_pred cchhhhhhhhhhcc
Q 018342 4 TSTALMAHLRLSYG 17 (357)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (357)
+.+.|..|.+.|++
T Consensus 16 ~~~~l~~H~~~H~~ 29 (29)
T 2ab3_A 16 DRRKLNRHKKIHTG 29 (29)
T ss_dssp SHHHHHHHHGGGTC
T ss_pred CHHHHHHHHHHhCC
Confidence 34678888888764
No 9
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=9.52 E-value=97 Score=17.19 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=10.8
Q ss_pred cchhhhhhhhhhcc
Q 018342 4 TSTALMAHLRLSYG 17 (357)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (357)
+.+.|..|.+.|++
T Consensus 16 ~~~~L~~H~~~H~~ 29 (31)
T 1sp2_A 16 RSDELQRHKRTHTG 29 (31)
T ss_dssp SHHHHHHHHTTTSC
T ss_pred CHhHHHHHHHHhcC
Confidence 45678889988875
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=9.41 E-value=9.6e+02 Score=21.69 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018342 267 WSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQ 298 (357)
Q Consensus 267 ~~I~~Yl~Fvl~lll~fGl~FqlPlI~~lL~~ 298 (357)
.+..+-+..-+++.+..|+..-+|+++.=+.+
T Consensus 55 t~~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~ 86 (249)
T 4b4a_A 55 LSPTEPLFILIKISLAVGFIIASPVILYQFWR 86 (249)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888899999999999887764
Done!