Query 018342
Match_columns 357
No_of_seqs 134 out of 1174
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 13:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018342.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018342hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a1ia1 g.37.1.1 (A:103-131) Z 19.2 15 0.0011 21.8 0.5 15 3-17 15-29 (29)
2 d1ubdc3 g.37.1.1 (C:351-380) Y 18.1 17 0.0012 21.6 0.6 15 3-17 15-29 (30)
3 d2glia3 g.37.1.1 (A:168-197) F 18.1 18 0.0013 21.4 0.9 15 3-17 15-29 (30)
4 d1lghb_ f.3.1.1 (B:) Light-har 16.8 1.3E+02 0.0092 19.2 5.2 33 215-247 4-36 (43)
5 d1a1ia2 g.37.1.1 (A:132-159) Z 14.0 24 0.0018 20.5 0.6 14 4-17 15-28 (28)
6 d2glia2 g.37.1.1 (A:135-167) F 12.4 26 0.0019 21.4 0.5 12 6-17 21-32 (33)
7 d2dmda1 g.37.1.1 (A:34-61) Zin 12.2 29 0.0021 20.2 0.6 13 4-16 15-27 (28)
8 d1x6ea1 g.37.1.1 (A:8-40) Zinc 11.8 37 0.0027 20.3 1.0 14 4-17 19-32 (33)
9 d1sp2a_ g.37.1.1 (A:) Transcri 11.6 34 0.0025 20.2 0.8 15 3-17 15-29 (31)
10 d1x6ea2 g.37.1.1 (A:41-66) Zin 10.2 36 0.0027 19.5 0.5 13 4-16 14-26 (26)
No 1
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.17 E-value=15 Score=21.76 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=12.5
Q ss_pred ccchhhhhhhhhhcc
Q 018342 3 STSTALMAHLRLSYG 17 (357)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (357)
++++.|..|.|.|+|
T Consensus 15 ~~~~~L~~H~r~HtG 29 (29)
T d1a1ia1 15 SRSADLTRHIRIHTG 29 (29)
T ss_dssp SSHHHHHHHTHHHHT
T ss_pred CchhHhhhhcCccCC
Confidence 457889999999986
No 2
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.08 E-value=17 Score=21.57 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.4
Q ss_pred ccchhhhhhhhhhcc
Q 018342 3 STSTALMAHLRLSYG 17 (357)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (357)
++++.|..|.|.|+|
T Consensus 15 ~~~~~L~~H~r~HTG 29 (30)
T d1ubdc3 15 SLDFNLRTHVRIHTG 29 (30)
T ss_dssp SCHHHHHHHHHHHHC
T ss_pred CcHHHcCccccccCC
Confidence 356889999999987
No 3
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.06 E-value=18 Score=21.41 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=12.5
Q ss_pred ccchhhhhhhhhhcc
Q 018342 3 STSTALMAHLRLSYG 17 (357)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (357)
+.++.|..|.|.|+|
T Consensus 15 ~~~~~L~~H~r~HtG 29 (30)
T d2glia3 15 SRLENLKTHLRSHTG 29 (30)
T ss_dssp SSHHHHHHHHHHTTT
T ss_pred CChhHhhhhcCcCcC
Confidence 356889999999987
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=16.82 E-value=1.3e+02 Score=19.19 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018342 215 PGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 247 (357)
Q Consensus 215 PgLy~~Erk~~~~~l~~s~~LF~lGv~F~YfvI 247 (357)
.||.+.|.+=+-..+.-++..|...++++...+
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLv 36 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLV 36 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999988888876543
No 5
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.95 E-value=24 Score=20.49 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=11.6
Q ss_pred cchhhhhhhhhhcc
Q 018342 4 TSTALMAHLRLSYG 17 (357)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (357)
.++-|..|.|.|+|
T Consensus 15 ~~~~L~~H~r~HTG 28 (28)
T d1a1ia2 15 RSDHLTTHIRTHTG 28 (28)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred ccccccccCCCccC
Confidence 45778999999987
No 6
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.38 E-value=26 Score=21.43 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=10.3
Q ss_pred hhhhhhhhhhcc
Q 018342 6 TALMAHLRLSYG 17 (357)
Q Consensus 6 ~~~~~~~~~~~~ 17 (357)
-+|..|.|.|+|
T Consensus 21 YkLv~H~R~HTg 32 (33)
T d2glia2 21 YMLVVHMRRHTG 32 (33)
T ss_dssp HHHHHHTHHHHC
T ss_pred HHHHHHHhhcCC
Confidence 478999999987
No 7
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.24 E-value=29 Score=20.18 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=10.8
Q ss_pred cchhhhhhhhhhc
Q 018342 4 TSTALMAHLRLSY 16 (357)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (357)
.|+.|..|+|+|+
T Consensus 15 dsssl~kh~rihs 27 (28)
T d2dmda1 15 DSSSLNKHLRIHS 27 (28)
T ss_dssp SHHHHHHHHHHSC
T ss_pred chhhHhhhhhccc
Confidence 3578999999986
No 8
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.82 E-value=37 Score=20.35 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=11.7
Q ss_pred cchhhhhhhhhhcc
Q 018342 4 TSTALMAHLRLSYG 17 (357)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (357)
..+.|..|.|+|+|
T Consensus 19 ~~~~L~~H~r~Htg 32 (33)
T d1x6ea1 19 RSSILVQHQRVHTG 32 (33)
T ss_dssp SHHHHHHHHHGGGC
T ss_pred chHHhHhhccccCC
Confidence 35789999999987
No 9
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.63 E-value=34 Score=20.18 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=12.1
Q ss_pred ccchhhhhhhhhhcc
Q 018342 3 STSTALMAHLRLSYG 17 (357)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (357)
+.++.|..|.|.|+|
T Consensus 15 ~~~~~L~~H~r~Htg 29 (31)
T d1sp2a_ 15 TRSDELQRHKRTHTG 29 (31)
T ss_dssp SSHHHHHHHHTTTSC
T ss_pred CChhHhhhhcCcccc
Confidence 346788999999987
No 10
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.18 E-value=36 Score=19.53 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=10.6
Q ss_pred cchhhhhhhhhhc
Q 018342 4 TSTALMAHLRLSY 16 (357)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (357)
.++.|..|.|+|+
T Consensus 14 ~~s~L~~HqriHT 26 (26)
T d1x6ea2 14 QNSGLINHQRIHT 26 (26)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cCcccccCccCCC
Confidence 3578999999985
Done!