BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018343
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157
V WT EE LF GL K G+ W I++ + SRT QV S+A++YF
Sbjct: 10 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYF 54
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 34.7 bits (78), Expect = 0.074, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 113 WTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 149
WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 113 WTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 149
WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 95 AHGSGSSNRRCERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 149
+H S+ +++K WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 2 SHMEDSTTNITKKQK---WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 54
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 113 WTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 149
WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 51
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 113 WTEEEHRLFLIGLQKLGKGDWRGIARNY-VMSRTPTQV 149
WT EE G+QK G+G+W I++NY ++RT +
Sbjct: 13 WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 50
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 113 WTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157
WT +E L + G G+W+ +A N + ++T + H KYF
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYF 54
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 113 WTEEEHRLFLIGLQKLGKGDWRGI 136
WT+EE LIG+ K G G W I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 113 WTEEEHRLFLIGLQKLGKGDWRGI 136
WT+EE LIG+ K G G W I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 113 WTEEEHR-----LFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNA 163
WT EE + L +++ W+ IA + + +RT QVAS QKYFI+ + A
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLTKA 65
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 113 WTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 158
W +E L + + LG G+W IA +RT + H K +I
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,168,206
Number of Sequences: 62578
Number of extensions: 332540
Number of successful extensions: 527
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 22
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)