Query 018343
Match_columns 357
No_of_seqs 221 out of 532
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 13:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.6 1.6E-15 5.4E-20 116.7 7.9 63 110-174 9-71 (72)
2 2yus_A SWI/SNF-related matrix- 99.5 2.8E-14 9.5E-19 112.9 4.8 48 108-157 16-63 (79)
3 2yum_A ZZZ3 protein, zinc fing 99.5 4.1E-14 1.4E-18 109.1 5.4 51 110-161 8-63 (75)
4 2elk_A SPCC24B10.08C protein; 99.5 7.6E-14 2.6E-18 103.7 6.1 47 111-158 10-57 (58)
5 1x41_A Transcriptional adaptor 99.4 1.3E-13 4.6E-18 102.7 5.9 48 110-158 8-55 (60)
6 2eqr_A N-COR1, N-COR, nuclear 99.4 3.4E-13 1.2E-17 101.2 7.5 54 104-162 6-59 (61)
7 1guu_A C-MYB, MYB proto-oncoge 99.4 1.2E-12 4.1E-17 94.3 6.8 47 110-157 3-49 (52)
8 1gvd_A MYB proto-oncogene prot 99.3 1.8E-12 6.3E-17 93.4 5.9 47 110-157 3-49 (52)
9 2yqk_A Arginine-glutamic acid 99.3 3.4E-12 1.2E-16 96.7 7.0 53 107-163 6-58 (63)
10 1ity_A TRF1; helix-turn-helix, 99.3 1.1E-11 3.8E-16 94.3 7.7 54 105-159 5-60 (69)
11 2d9a_A B-MYB, MYB-related prot 99.3 6.2E-12 2.1E-16 93.1 6.1 49 109-158 7-55 (60)
12 1w0t_A Telomeric repeat bindin 99.2 1.3E-11 4.4E-16 89.6 6.7 48 110-158 2-51 (53)
13 2crg_A Metastasis associated p 99.2 2.3E-11 7.8E-16 94.1 7.5 55 106-164 4-58 (70)
14 3sjm_A Telomeric repeat-bindin 99.2 3.1E-11 1E-15 91.8 7.2 48 109-157 10-59 (64)
15 2dim_A Cell division cycle 5-l 99.2 2E-11 7E-16 93.0 5.9 50 108-158 7-56 (70)
16 2iw5_B Protein corest, REST co 99.2 1.9E-11 6.4E-16 114.1 5.2 52 106-159 129-180 (235)
17 1irz_A ARR10-B; helix-turn-hel 99.1 1.2E-10 4.2E-15 89.7 7.3 56 106-162 3-62 (64)
18 2xag_B REST corepressor 1; ami 99.1 4.3E-11 1.5E-15 121.3 5.7 51 108-160 378-428 (482)
19 2din_A Cell division cycle 5-l 99.1 2.1E-10 7.3E-15 86.4 7.4 48 111-161 10-57 (66)
20 2cqr_A RSGI RUH-043, DNAJ homo 99.1 2E-10 6.7E-15 90.0 6.4 49 108-157 16-67 (73)
21 2ltp_A Nuclear receptor corepr 98.6 2E-11 6.7E-16 97.9 0.0 48 111-160 17-64 (89)
22 1gv2_A C-MYB, MYB proto-oncoge 99.0 2.9E-10 1E-14 91.7 5.9 46 111-157 5-50 (105)
23 2ckx_A NGTRF1, telomere bindin 99.0 1.4E-09 4.7E-14 87.0 8.1 51 111-161 1-54 (83)
24 2k9n_A MYB24; R2R3 domain, DNA 99.0 6.4E-10 2.2E-14 90.6 5.9 46 111-157 2-47 (107)
25 2aje_A Telomere repeat-binding 98.9 1.3E-09 4.6E-14 90.7 7.0 55 105-159 8-65 (105)
26 3osg_A MYB21; transcription-DN 98.9 1.4E-09 4.8E-14 91.1 6.6 50 107-158 8-57 (126)
27 2roh_A RTBP1, telomere binding 98.9 2.2E-09 7.5E-14 91.6 7.7 56 105-160 26-84 (122)
28 4a69_C Nuclear receptor corepr 98.9 8.5E-10 2.9E-14 89.7 4.7 54 105-163 38-91 (94)
29 2cjj_A Radialis; plant develop 98.9 2.3E-09 7.7E-14 87.5 7.1 50 111-161 9-61 (93)
30 1h8a_C AMV V-MYB, MYB transfor 98.9 1.6E-09 5.4E-14 90.6 6.1 47 110-157 27-73 (128)
31 3zqc_A MYB3; transcription-DNA 98.9 1.2E-09 4.1E-14 91.9 5.2 47 111-158 3-49 (131)
32 2k9n_A MYB24; R2R3 domain, DNA 98.9 3.6E-09 1.2E-13 86.2 7.4 50 110-161 53-102 (107)
33 2juh_A Telomere binding protei 98.9 4.7E-09 1.6E-13 89.5 7.9 56 105-160 12-70 (121)
34 1gv2_A C-MYB, MYB proto-oncoge 98.8 4.1E-09 1.4E-13 85.0 5.6 46 110-157 56-101 (105)
35 1wgx_A KIAA1903 protein; MYB D 98.8 3.3E-09 1.1E-13 83.5 4.0 45 111-156 9-56 (73)
36 3osg_A MYB21; transcription-DN 98.8 9.8E-09 3.3E-13 85.9 7.0 50 110-161 62-111 (126)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.8 1.1E-08 3.8E-13 79.7 6.8 45 110-156 8-55 (72)
38 2llk_A Cyclin-D-binding MYB-li 98.7 1.5E-08 5.1E-13 79.3 5.9 42 110-154 23-64 (73)
39 1h89_C C-MYB, MYB proto-oncoge 98.7 1.7E-08 5.8E-13 87.0 5.8 47 110-157 58-104 (159)
40 3zqc_A MYB3; transcription-DNA 98.7 1.8E-08 6.2E-13 84.7 5.1 48 111-160 55-102 (131)
41 1h8a_C AMV V-MYB, MYB transfor 98.7 1.3E-08 4.6E-13 84.9 4.3 45 110-156 79-123 (128)
42 4eef_G F-HB80.4, designed hema 98.6 6.5E-09 2.2E-13 82.3 0.1 46 108-154 18-66 (74)
43 1h89_C C-MYB, MYB proto-oncoge 98.5 7.8E-08 2.7E-12 82.8 4.0 46 109-156 109-154 (159)
44 1x58_A Hypothetical protein 49 98.4 5.8E-07 2E-11 69.0 6.2 45 109-154 7-53 (62)
45 1ign_A Protein (RAP1); RAP1,ye 98.1 1.8E-06 6.3E-11 81.2 4.0 47 111-158 9-60 (246)
46 2xag_B REST corepressor 1; ami 97.7 5.8E-06 2E-10 84.1 0.0 48 111-163 190-237 (482)
47 1ofc_X ISWI protein; nuclear p 97.4 0.00013 4.6E-09 70.4 5.2 49 109-157 211-273 (304)
48 1fex_A TRF2-interacting telome 97.2 0.0004 1.4E-08 52.0 4.7 48 110-157 2-57 (59)
49 1ofc_X ISWI protein; nuclear p 97.0 0.00089 3.1E-08 64.7 6.2 49 111-160 111-159 (304)
50 4b4c_A Chromodomain-helicase-D 96.3 0.0056 1.9E-07 54.2 6.2 54 107-160 4-60 (211)
51 4b4c_A Chromodomain-helicase-D 96.3 0.0086 2.9E-07 53.0 7.0 50 110-160 134-196 (211)
52 1ug2_A 2610100B20RIK gene prod 96.0 0.021 7.1E-07 47.1 7.5 49 108-157 31-81 (95)
53 3hm5_A DNA methyltransferase 1 95.8 0.025 8.4E-07 46.3 7.0 42 111-153 31-76 (93)
54 2ebi_A DNA binding protein GT- 95.6 0.014 4.6E-07 45.5 4.7 51 108-159 2-65 (86)
55 2y9y_A Imitation switch protei 94.5 0.042 1.5E-06 54.5 5.8 49 111-160 124-173 (374)
56 2xb0_X Chromo domain-containin 94.0 0.034 1.2E-06 52.8 3.8 27 111-137 169-195 (270)
57 1dsq_A Nucleic acid binding pr 93.9 0.029 1E-06 35.4 2.2 21 2-22 2-22 (26)
58 2lr8_A CAsp8-associated protei 91.9 0.021 7E-07 44.8 0.0 46 109-156 13-60 (70)
59 2y9y_A Imitation switch protei 92.2 0.18 6E-06 50.1 5.8 51 109-160 227-291 (374)
60 2hzd_A Transcriptional enhance 91.2 0.2 6.9E-06 40.2 4.2 48 108-155 4-70 (82)
61 4iej_A DNA methyltransferase 1 90.9 0.62 2.1E-05 38.2 6.8 42 111-153 31-76 (93)
62 1a6b_B Momulv, zinc finger pro 86.8 0.33 1.1E-05 33.9 2.2 20 3-22 11-30 (40)
63 1nc8_A Nucleocapsid protein; H 86.7 0.25 8.4E-06 31.7 1.3 19 3-21 7-25 (29)
64 2ihx_A Nucleocapsid (NC) prote 83.5 0.5 1.7E-05 34.8 1.9 19 4-22 32-50 (61)
65 1u6p_A GAG polyprotein; MLV, A 80.9 0.61 2.1E-05 34.7 1.6 20 3-22 24-43 (56)
66 2bl6_A Nucleocapsid protein P1 80.5 0.68 2.3E-05 30.9 1.5 17 4-20 2-18 (37)
67 2a51_A Nucleocapsid protein; s 80.4 0.94 3.2E-05 30.5 2.3 16 4-19 2-17 (39)
68 2bl6_A Nucleocapsid protein P1 78.1 1.2 3.9E-05 29.7 2.1 17 4-20 21-37 (37)
69 1a1t_A Nucleocapsid protein; s 77.0 0.98 3.3E-05 32.3 1.6 18 3-20 13-30 (55)
70 2ihx_A Nucleocapsid (NC) prote 75.8 1.2 4E-05 32.8 1.8 22 1-22 3-24 (61)
71 2ec7_A GAG polyprotein (PR55GA 75.3 1.3 4.3E-05 31.3 1.8 18 3-20 7-24 (49)
72 2ec7_A GAG polyprotein (PR55GA 75.2 1.5 5E-05 31.0 2.1 19 3-21 28-46 (49)
73 2a51_A Nucleocapsid protein; s 74.5 1.4 4.9E-05 29.6 1.8 16 5-20 24-39 (39)
74 2xb0_X Chromo domain-containin 73.0 8.7 0.0003 36.4 7.4 44 111-154 4-50 (270)
75 1ign_A Protein (RAP1); RAP1,ye 70.4 7.1 0.00024 36.9 6.1 28 132-160 173-200 (246)
76 1a1t_A Nucleocapsid protein; s 69.7 1.8 6.1E-05 30.9 1.5 19 3-21 34-52 (55)
77 1cl4_A Protein (GAG polyprotei 69.6 2.8 9.5E-05 30.4 2.5 20 3-22 31-50 (60)
78 1cl4_A Protein (GAG polyprotei 68.1 1.1 3.6E-05 32.6 0.0 21 2-22 1-21 (60)
79 2cqf_A RNA-binding protein LIN 61.5 3.5 0.00012 30.5 1.8 17 3-19 8-24 (63)
80 2cqf_A RNA-binding protein LIN 60.8 4.6 0.00016 29.8 2.3 19 3-21 30-48 (63)
81 2li8_A Protein LIN-28 homolog 59.1 3.8 0.00013 31.6 1.6 18 3-20 25-42 (74)
82 3nyb_B Protein AIR2; polya RNA 58.5 4.4 0.00015 32.0 1.9 20 3-22 47-66 (83)
83 2li8_A Protein LIN-28 homolog 56.2 5.7 0.0002 30.6 2.2 20 3-22 47-66 (74)
84 3ts2_A Protein LIN-28 homolog 53.6 5.3 0.00018 34.3 1.8 19 3-21 98-116 (148)
85 2lli_A Protein AIR2; RNA surve 51.7 7.2 0.00025 31.8 2.2 19 3-21 65-83 (124)
86 2ysa_A Retinoblastoma-binding 46.2 8 0.00027 28.5 1.5 20 2-21 7-26 (55)
87 3nyb_B Protein AIR2; polya RNA 45.6 6.5 0.00022 31.0 1.0 19 3-21 6-24 (83)
88 2lli_A Protein AIR2; RNA surve 43.6 11 0.00039 30.6 2.2 19 3-21 5-23 (124)
89 2li6_A SWI/SNF chromatin-remod 36.1 40 0.0014 27.4 4.4 29 131-160 71-99 (116)
90 4g0a_A Non-structural protein 35.2 12 0.0004 36.2 1.1 54 110-171 194-256 (317)
91 2gu0_A Nonstructural protein 2 31.6 10 0.00035 36.5 0.1 51 111-169 192-251 (312)
92 1lfb_A Liver transcription fac 29.9 76 0.0026 25.4 5.0 24 104-127 7-30 (99)
93 2jrz_A Histone demethylase jar 28.9 62 0.0021 26.4 4.4 31 130-161 61-95 (117)
94 2lm1_A Lysine-specific demethy 27.1 1E+02 0.0035 24.3 5.3 31 131-161 66-99 (107)
95 2lc3_A E3 ubiquitin-protein li 26.8 1.3E+02 0.0045 24.3 5.8 55 105-159 8-79 (88)
96 1kkx_A Transcription regulator 24.9 57 0.0019 27.1 3.5 30 131-161 70-99 (123)
97 2cxy_A BAF250B subunit, HBAF25 24.6 74 0.0025 26.1 4.1 30 131-161 73-106 (125)
98 2eqy_A RBP2 like, jumonji, at 24.4 2.6E+02 0.0089 22.8 7.4 32 130-162 63-98 (122)
99 2da3_A Alpha-fetoprotein enhan 24.0 2.1E+02 0.0073 20.8 6.7 57 105-167 16-75 (80)
100 2rq5_A Protein jumonji; develo 23.6 75 0.0026 26.4 4.0 31 131-161 64-98 (121)
101 1c20_A DEAD ringer protein; DN 22.8 1E+02 0.0035 25.3 4.7 31 131-161 74-108 (128)
102 2dmt_A Homeobox protein BARH-l 22.3 2.4E+02 0.0082 20.8 8.4 59 105-169 16-77 (80)
103 1ig6_A MRF-2, modulator recogn 20.4 63 0.0021 25.7 2.8 29 131-159 55-87 (107)
104 2kk0_A AT-rich interactive dom 20.2 89 0.003 26.5 3.8 31 131-161 86-120 (145)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.60 E-value=1.6e-15 Score=116.70 Aligned_cols=63 Identities=37% Similarity=0.546 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhcccCcCcccc
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRRSSLFD 174 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~~~~krKrR~Sl~D 174 (357)
..+||+||+++|++++++||. +|..|| .+|++||..||+.||++||.++.+....+++.+||+
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia-~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 469999999999999999999 999999 599999999999999999999887777888888885
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-14 Score=112.88 Aligned_cols=48 Identities=31% Similarity=0.472 Sum_probs=43.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 108 KKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 108 kk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
....+||+||+++|++||++|| ++|..|| ++|++||..||+.|+++|+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTSC
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHhc
Confidence 3457999999999999999999 7999999 6999999999999998763
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.1e-14 Score=109.06 Aligned_cols=51 Identities=39% Similarity=0.535 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-----CCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 018343 110 GVPWTEEEHRLFLIGLQKLGK-----GDWRGIARNYVMSRTPTQVASHAQKYFIRQS 161 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGk-----GdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~ 161 (357)
..+||+||+++|+++|++||. ++|..|| .+|++||..||+.|||+||.++.
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA-~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHH-HHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHhCCCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999996 6999999 69999999999999999997654
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.45 E-value=7.6e-14 Score=103.71 Aligned_cols=47 Identities=34% Similarity=0.637 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM-SRTPTQVASHAQKYFI 158 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~-TRTp~QVrSHAQKYF~ 158 (357)
.+||+||+++|++++++||.++|..|| .+|+ +||+.||+.|+++||+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHcc
Confidence 579999999999999999988999999 6999 9999999999999985
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=1.3e-13 Score=102.72 Aligned_cols=48 Identities=29% Similarity=0.589 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 158 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 158 (357)
..+||+||+++|++++++||.++|..|| ++|++||+.||+.|+++||.
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHcc
Confidence 3689999999999999999988999999 69999999999999999976
No 6
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=101.24 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=48.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhh
Q 018343 104 RCERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSN 162 (357)
Q Consensus 104 ~~~rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~~ 162 (357)
.++|+...+||+|||++|++||.+||+ +|..|| .+|++||+.||+ +.||+++++
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v---~~Yy~~Kk~ 59 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCV---LYYYLTKKN 59 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHH---HHHHHHTCC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHH---HHHHHhcCC
Confidence 367788899999999999999999997 999999 799999999995 667887654
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.36 E-value=1.2e-12 Score=94.26 Aligned_cols=47 Identities=34% Similarity=0.514 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
..+||+||+++|++++++||.++|..|| .++++||..||+.|+++|+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999999999 6899999999999999886
No 8
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.32 E-value=1.8e-12 Score=93.42 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
..+||+||+++|++++++||.++|..|| .++++||..||+.|+++|+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998999999 6999999999999998875
No 9
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.4e-12 Score=96.72 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=46.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhh
Q 018343 107 RKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNA 163 (357)
Q Consensus 107 rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~~~ 163 (357)
+.....||+||+++|++||.+||+ +|..|++++|++||..|| .+.||++++..
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~---v~fYY~wKkt~ 58 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGEL---ITFYYYWKKTS 58 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHH---HHHHHHHHCSS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHH---HHHHhcccCCC
Confidence 344579999999999999999999 999999658999999999 68889887653
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.26 E-value=1.1e-11 Score=94.32 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=48.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHHH
Q 018343 105 CERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM--SRTPTQVASHAQKYFIR 159 (357)
Q Consensus 105 ~~rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~--TRTp~QVrSHAQKYF~r 159 (357)
..+++..+||+||++++++++++||.++|..|| .+++ +||..||+.++.+|+..
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHH-HHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHH-HHcCcCCCCHHHHHHHHHHHcCC
Confidence 455667899999999999999999988999999 5889 99999999999888653
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.26 E-value=6.2e-12 Score=93.06 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 018343 109 KGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 158 (357)
Q Consensus 109 k~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 158 (357)
+..+||+||+++|++++++||.++|..|| .++++||..||+.|+++|+.
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHH-HHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHccCCCHHHHHHHHHHHcC
Confidence 34699999999999999999988999999 69999999999999988753
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.24 E-value=1.3e-11 Score=89.60 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM--SRTPTQVASHAQKYFI 158 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~--TRTp~QVrSHAQKYF~ 158 (357)
..+||+||++++++++++||.++|..|| .+++ +||..||+.++.+|..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCCCHHHHHHHHHHHHc
Confidence 4699999999999999999988999999 5889 9999999999988753
No 13
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.22 E-value=2.3e-11 Score=94.10 Aligned_cols=55 Identities=22% Similarity=0.447 Sum_probs=48.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhh
Q 018343 106 ERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNAT 164 (357)
Q Consensus 106 ~rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~~~~ 164 (357)
.|+....||+||+++|++||.+||+ +|..|++++|+|||..|| .+-||.++++.+
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~---v~fYY~wKkt~~ 58 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSI---IEYYYMWKTTDR 58 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHH---HHHHHHHHTCCS
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHH---HHHHHhhcCCch
Confidence 3466789999999999999999999 999999558999999999 577888887654
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.20 E-value=3.1e-11 Score=91.83 Aligned_cols=48 Identities=29% Similarity=0.503 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC--CCCHHHHHHHHHHHH
Q 018343 109 KGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM--SRTPTQVASHAQKYF 157 (357)
Q Consensus 109 k~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~--TRTp~QVrSHAQKYF 157 (357)
+..+||+||++++++++++||.++|..||+ +++ +||..||+.++.+|.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHh
Confidence 346899999999999999999999999995 654 899999999998764
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2e-11 Score=92.96 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=44.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 018343 108 KKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 158 (357)
Q Consensus 108 kk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 158 (357)
.+..+||+||+++++.++++||.++|..|| .+|++||..||+.|+++|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHH-HHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHhcCCCHHHHHHHHHHHcC
Confidence 345699999999999999999988999999 69999999999999887753
No 16
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.16 E-value=1.9e-11 Score=114.11 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=46.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 018343 106 ERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIR 159 (357)
Q Consensus 106 ~rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r 159 (357)
..+...+||+||+++|++||.+||+ +|..|| .+|+|||..||+.||++|..|
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IA-k~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHH-HHHSSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHH
Confidence 3456679999999999999999998 999999 589999999999999877543
No 17
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.12 E-value=1.2e-10 Score=89.71 Aligned_cols=56 Identities=32% Similarity=0.429 Sum_probs=47.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCC--CHHHHHhhhcC--CCCHHHHHHHHHHHHHHHhh
Q 018343 106 ERKKGVPWTEEEHRLFLIGLQKLGKG--DWRGIARNYVM--SRTPTQVASHAQKYFIRQSN 162 (357)
Q Consensus 106 ~rkk~~~WTeEEH~~FL~GL~kyGkG--dWk~IA~~~V~--TRTp~QVrSHAQKYF~r~~~ 162 (357)
.+|.+..||+|.|++|++|++.+|.. .|+.|. .+++ ..|..||+||.|||++++++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il-~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKIL-DLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHH-HHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 46777899999999999999999931 389998 4654 57999999999999998764
No 18
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.11 E-value=4.3e-11 Score=121.27 Aligned_cols=51 Identities=27% Similarity=0.451 Sum_probs=46.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 018343 108 KKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 108 kk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~ 160 (357)
+...+||+|||.+|++||.+||+ +|+.|| .+|+|||..||++|+++|+.|+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA-~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHH-HHHSSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHhCCCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999 999999 5899999999999998885543
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=2.1e-10 Score=86.40 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQS 161 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~ 161 (357)
.+||.||+++|++++++||. +|..||+ +++ ||..||+.|+++|+....
T Consensus 10 ~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHh
Confidence 58999999999999999999 9999996 665 999999999999987654
No 20
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.06 E-value=2e-10 Score=89.96 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=43.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC---CCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 108 KKGVPWTEEEHRLFLIGLQKLGK---GDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 108 kk~~~WTeEEH~~FL~GL~kyGk---GdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
....+||.||+.+|+++|++||+ .+|..|| .+|++||..||+.|++++.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 34568999999999999999995 3899999 6999999999999998653
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.62 E-value=2e-11 Score=97.91 Aligned_cols=48 Identities=38% Similarity=0.494 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~ 160 (357)
.+||+||+++|++++++||. +|..|| .+|++||..||+.|+++|+.++
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~-~W~~IA-~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGR-NWSAIA-RMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 68999999999999999999 899999 6999999999999999887654
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.02 E-value=2.9e-10 Score=91.70 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
++||+||+++++.++++||.++|..|| .++++||+.||+.|+++|+
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhcc
Confidence 689999999999999999998999999 6999999999999988874
No 23
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.97 E-value=1.4e-09 Score=87.04 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhh---hcCCCCHHHHHHHHHHHHHHHh
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARN---YVMSRTPTQVASHAQKYFIRQS 161 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~---~V~TRTp~QVrSHAQKYF~r~~ 161 (357)
.+||+||++.+++|+++||.|+|+.|++. ++..||..||+.++.+++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 37999999999999999999999999964 3789999999999999876543
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.96 E-value=6.4e-10 Score=90.64 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
+.||+||+++|+.++++||.++|..|| .+|++||+.||+.++.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHH-HHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHh-hhcCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999999 6999999999999888775
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.94 E-value=1.3e-09 Score=90.75 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=47.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHH
Q 018343 105 CERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY---VMSRTPTQVASHAQKYFIR 159 (357)
Q Consensus 105 ~~rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~---V~TRTp~QVrSHAQKYF~r 159 (357)
..+++..+||+||++.+++|+++||.|+|+.|++.+ +..||..||+.+|.+++.+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 456777899999999999999999999999999643 2789999999999888654
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.92 E-value=1.4e-09 Score=91.08 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=45.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 018343 107 RKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 158 (357)
Q Consensus 107 rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 158 (357)
..+.++||+||+++++.++++||. +|..|| .++++||+.||+.|+++|+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhcc
Confidence 445578999999999999999998 999999 69999999999999988763
No 27
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.91 E-value=2.2e-09 Score=91.64 Aligned_cols=56 Identities=23% Similarity=0.382 Sum_probs=49.0
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHH
Q 018343 105 CERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY---VMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 105 ~~rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~---V~TRTp~QVrSHAQKYF~r~ 160 (357)
..|++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++..-
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 456677899999999999999999999999999753 37899999999999887644
No 28
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.91 E-value=8.5e-10 Score=89.73 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=46.7
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhh
Q 018343 105 CERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNA 163 (357)
Q Consensus 105 ~~rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~~~ 163 (357)
.+|+....||+|||++|.+++.+||+ +|..|+ +++++||..|| .+-||.+++..
T Consensus 38 ~~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~c---V~~YY~~Kk~~ 91 (94)
T 4a69_C 38 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAEC---VLYYYLTKKNE 91 (94)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHH---HHHHHHHSCC-
T ss_pred hccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHH---HHHHhccccCc
Confidence 35566789999999999999999999 999998 79999999999 57788876643
No 29
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.90 E-value=2.3e-09 Score=87.47 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCC---CHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 018343 111 VPWTEEEHRLFLIGLQKLGKG---DWRGIARNYVMSRTPTQVASHAQKYFIRQS 161 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkG---dWk~IA~~~V~TRTp~QVrSHAQKYF~r~~ 161 (357)
.+||.||+++|+++|++||++ +|..|| .+|++||..||+.|+++++...+
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA-~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999853 799999 69999999999999998876654
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.90 E-value=1.6e-09 Score=90.55 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
.++||+||+++++.++++||.++|..|| .++++||..||+.|+++|+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHH-HHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHhcCCcHHHHHHHHHHhc
Confidence 3689999999999999999998999999 6999999999999988775
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.89 E-value=1.2e-09 Score=91.88 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFI 158 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 158 (357)
++||+||+++++.++++||.++|..|| .+|++||+.||+.|+++|+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhccC
Confidence 589999999999999999988999999 69999999999999988863
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.88 E-value=3.6e-09 Score=86.18 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQS 161 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~ 161 (357)
.++||+||+.+|+.++++||. +|..|| .++++||..||+.|+..+..+..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKIS-KFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHH-HHCCCCCHHHHHHHHHHHHhhHH
Confidence 369999999999999999998 899999 59999999999999987665543
No 33
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.86 E-value=4.7e-09 Score=89.47 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=48.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHH
Q 018343 105 CERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNY---VMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 105 ~~rkk~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~---V~TRTp~QVrSHAQKYF~r~ 160 (357)
..+++..+||+||++.+++|+++||.|+|..|++.+ +..||..||+.+|.+++...
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456667799999999999999999999999999654 47899999999999887653
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.81 E-value=4.1e-09 Score=85.00 Aligned_cols=46 Identities=30% Similarity=0.586 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
..+||+||+++|+.++++||. +|..|| .+|++||..||+.|+..+.
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 469999999999999999997 999999 6999999999999887654
No 35
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=3.3e-09 Score=83.49 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGK---GDWRGIARNYVMSRTPTQVASHAQKY 156 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGk---GdWk~IA~~~V~TRTp~QVrSHAQKY 156 (357)
..||+||+++|+.||.+|++ ++|..|| .+|++||..||+.|++..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA-~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 47999999999999999997 5899999 699999999998766543
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.78 E-value=9.8e-09 Score=85.95 Aligned_cols=50 Identities=26% Similarity=0.485 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQS 161 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~ 161 (357)
.++||+||++++++++++||. +|..|| .++++||..||+.|+..+..++.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGR-QWAIIA-KFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHhcC
Confidence 368999999999999999997 899999 69999999999999876665543
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=1.1e-08 Score=79.74 Aligned_cols=45 Identities=29% Similarity=0.518 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---CHHHHHhhhcCCCCHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKG---DWRGIARNYVMSRTPTQVASHAQKY 156 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkG---dWk~IA~~~V~TRTp~QVrSHAQKY 156 (357)
...||.||+++|..+|.+|+.| +|..|| .++ .||..||+.|++++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA-~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIA-HEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHh-CCCHHHHHHHHHHH
Confidence 3589999999999999999964 699999 578 59999999988765
No 38
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.72 E-value=1.5e-08 Score=79.34 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQ 154 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQ 154 (357)
..+||+||++++++++++||. +|..||+ ++ .||..||+.++.
T Consensus 23 k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR 64 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence 369999999999999999998 5999995 77 999999998874
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.69 E-value=1.7e-08 Score=86.95 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
..+||+||+.+++.++++||.++|..|| .++++||..||+.++++|+
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence 4699999999999999999988999999 6999999999999988775
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.66 E-value=1.8e-08 Score=84.71 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~ 160 (357)
++||+||++++++++++||. .|..|| .++++||..||+.|+..|+.+.
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGS-KWSVIA-KLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCS-CHHHHT-TTSTTCCHHHHHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999997 899999 6999999999999987776543
No 41
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.66 E-value=1.3e-08 Score=84.89 Aligned_cols=45 Identities=33% Similarity=0.589 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 156 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKY 156 (357)
..+||+||++++++++++||. +|..|| .++++||..||+.|+..+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHG-GGSTTCCHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 468999999999999999998 999999 699999999999887644
No 42
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.58 E-value=6.5e-09 Score=82.25 Aligned_cols=46 Identities=37% Similarity=0.666 Sum_probs=39.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCC---CHHHHHhhhcCCCCHHHHHHHHH
Q 018343 108 KKGVPWTEEEHRLFLIGLQKLGKG---DWRGIARNYVMSRTPTQVASHAQ 154 (357)
Q Consensus 108 kk~~~WTeEEH~~FL~GL~kyGkG---dWk~IA~~~V~TRTp~QVrSHAQ 154 (357)
.....||.||.++|..||.+|+++ +|..|| .+|++||+.||+.|+|
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA-~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVA-QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTG-GGSCSSCHHHHHGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHcCCCCHHHHHHHHH
Confidence 335689999999999999999987 899999 6999999999998886
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.47 E-value=7.8e-08 Score=82.83 Aligned_cols=46 Identities=33% Similarity=0.598 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 018343 109 KGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKY 156 (357)
Q Consensus 109 k~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKY 156 (357)
+..+||+||++++++++++||. +|..|| .+|++||..||+.|+..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 3569999999999999999998 999999 599999999999887644
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.37 E-value=5.8e-07 Score=68.96 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhh--hcCCCCHHHHHHHHH
Q 018343 109 KGVPWTEEEHRLFLIGLQKLGKGDWRGIARN--YVMSRTPTQVASHAQ 154 (357)
Q Consensus 109 k~~~WTeEEH~~FL~GL~kyGkGdWk~IA~~--~V~TRTp~QVrSHAQ 154 (357)
+..+||+||.+.+++|+++||+ .|+.|+.+ |+..||...++..+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHH
Confidence 4469999999999999999999 99999953 778899999987653
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.07 E-value=1.8e-06 Score=81.20 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-----HHHHHhhhcCCCCHHHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGD-----WRGIARNYVMSRTPTQVASHAQKYFI 158 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGd-----Wk~IA~~~V~TRTp~QVrSHAQKYF~ 158 (357)
.+||+||++.+++.+++||..+ |..|| .+++.||..||+.||.+|+.
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHh
Confidence 5899999999999999998754 99999 69999999999999998864
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.68 E-value=5.8e-06 Score=84.12 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhh
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNA 163 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~~~ 163 (357)
..||+||+.+|.+||.+||+ +|..|+ .+|++||..|| .+.||.|++..
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~-~~lp~Ksv~e~---V~yYY~WKKt~ 237 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQ-QMLPDKSIASL---VKFYYSWKKTR 237 (482)
T ss_dssp -----------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHH-HHcCCCCHHHH---HHHhccccccc
Confidence 47999999999999999999 999999 69999999999 67788887754
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.39 E-value=0.00013 Score=70.38 Aligned_cols=49 Identities=29% Similarity=0.450 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCHHHHH---h--------hhcCCCCHHHHHHHHHHHH
Q 018343 109 KGVPWTEEEHRLFLIGLQKLGK---GDWRGIA---R--------NYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 109 k~~~WTeEEH~~FL~GL~kyGk---GdWk~IA---~--------~~V~TRTp~QVrSHAQKYF 157 (357)
++..||+|||+.||.+|.+||. |+|..|. + .|+.+||+.++..|++--.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 4568999999999999999999 9999995 2 4899999999999997443
No 48
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.19 E-value=0.0004 Score=52.05 Aligned_cols=48 Identities=10% Similarity=0.272 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHc--------CCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKL--------GKGDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~ky--------GkGdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
+.+||+||+..++..|..| |..-|+.|++..++.+|-.++|.|+.||+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999 66689999964789999999999988864
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.98 E-value=0.00089 Score=64.67 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~ 160 (357)
.-||..+-..|+.|+.+||+.+|..|| ..|++||+.+|+.|++-++.|.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA-~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhH
Confidence 369999999999999999999999999 6999999999999998777765
No 50
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.32 E-value=0.0056 Score=54.17 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=42.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC--CCCHHHHHhh-hcCCCCHHHHHHHHHHHHHHH
Q 018343 107 RKKGVPWTEEEHRLFLIGLQKLG--KGDWRGIARN-YVMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 107 rkk~~~WTeEEH~~FL~GL~kyG--kGdWk~IA~~-~V~TRTp~QVrSHAQKYF~r~ 160 (357)
|++...||+.|.+.|+.|+.+|| .++|..|++. -+..||...|+.+++-+..+.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 45667899999999999999999 6899999852 256899999998877665553
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.26 E-value=0.0086 Score=52.99 Aligned_cols=50 Identities=26% Similarity=0.553 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHh-------------hhcCCCCHHHHHHHHHHHHHHH
Q 018343 110 GVPWTEEEHRLFLIGLQKLGKGDWRGIAR-------------NYVMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~kyGkGdWk~IA~-------------~~V~TRTp~QVrSHAQKYF~r~ 160 (357)
...||+||++.+|.|+.+||.|+|..|-. .+..+++..++..+|. |+++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence 35799999999999999999999999953 1235566778888884 66654
No 52
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.00 E-value=0.021 Score=47.07 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=43.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC--CCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 018343 108 KKGVPWTEEEHRLFLIGLQKLGK--GDWRGIARNYVMSRTPTQVASHAQKYF 157 (357)
Q Consensus 108 kk~~~WTeEEH~~FL~GL~kyGk--GdWk~IA~~~V~TRTp~QVrSHAQKYF 157 (357)
++.+.||.||++..|...++-|. ..|..|| ..++.|++-||..+.|...
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA-~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVIS-QQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH-HHHSSCCHHHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHH-HHHccCCHHHHHHHHHHHH
Confidence 55689999999999999999985 5899999 5899999999999887653
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.76 E-value=0.025 Score=46.28 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhc----CCCCHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYV----MSRTPTQVASHA 153 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V----~TRTp~QVrSHA 153 (357)
..||.||...+++..++||- +|..|+..|- +.||..+++.+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHH
Confidence 68999999999999999998 9999996553 579999999754
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.58 E-value=0.014 Score=45.55 Aligned_cols=51 Identities=16% Similarity=0.372 Sum_probs=37.6
Q ss_pred cCCCCCCHHHHHHHHHHHHH----cCC-----CCHHHHHhhhcC----CCCHHHHHHHHHHHHHH
Q 018343 108 KKGVPWTEEEHRLFLIGLQK----LGK-----GDWRGIARNYVM----SRTPTQVASHAQKYFIR 159 (357)
Q Consensus 108 kk~~~WTeEEH~~FL~GL~k----yGk-----GdWk~IA~~~V~----TRTp~QVrSHAQKYF~r 159 (357)
+....||++|-.+||..... |.. ..|..||. .+. .||+.||+..+..-...
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999764 221 28999995 433 69999998877544443
No 55
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.51 E-value=0.042 Score=54.50 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYVM-SRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V~-TRTp~QVrSHAQKYF~r~ 160 (357)
..||..+-..|+.|+++||+.+...|| ..|. ++|+.+|+.+++-|+.|.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA-~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIA-RELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHH-SSCCCSSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHH-HHHccCCCHHHHHHHHHHHHHhh
Confidence 369999999999999999999999999 5887 999999999887776653
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.01 E-value=0.034 Score=52.82 Aligned_cols=27 Identities=44% Similarity=0.850 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIA 137 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA 137 (357)
..|+.+|+..+|.||-+||.|.|..|-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 479999999999999999999999995
No 57
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=93.94 E-value=0.029 Score=35.42 Aligned_cols=21 Identities=29% Similarity=0.678 Sum_probs=18.4
Q ss_pred CCccCCCCCCCCCCCCCCCCC
Q 018343 2 TRRCSHCSNNGHNSRTCPTRG 22 (357)
Q Consensus 2 ~R~CS~Cg~~GHNsRTC~~~~ 22 (357)
.++|-.||..||-+|.|+...
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC-
T ss_pred CCeeEeCCCCCcccccCCCcc
Confidence 468999999999999999874
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=91.89 E-value=0.021 Score=44.82 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC--CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 018343 109 KGVPWTEEEHRLFLIGLQKLGK--GDWRGIARNYVMSRTPTQVASHAQKY 156 (357)
Q Consensus 109 k~~~WTeEEH~~FL~GL~kyGk--GdWk~IA~~~V~TRTp~QVrSHAQKY 156 (357)
....||.||++..|...++-|. ..|..||+ .+ .||+.||..+.|..
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQL 60 (70)
Confidence 3568999999999999999995 58999995 55 79999998887754
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=92.17 E-value=0.18 Score=50.12 Aligned_cols=51 Identities=27% Similarity=0.418 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCHHHHHh-----------hhcCCCCHHHHHHHHHHHHHHH
Q 018343 109 KGVPWTEEEHRLFLIGLQKLGK---GDWRGIAR-----------NYVMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 109 k~~~WTeEEH~~FL~GL~kyGk---GdWk~IA~-----------~~V~TRTp~QVrSHAQKYF~r~ 160 (357)
++..||+||++-+|.+|-+||- |.|..|-. -|+.+||+..+.-|+. .+++.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~-tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN-TLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH-HHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH-HHHHH
Confidence 3457999999999999999998 99999932 2499999999988885 44443
No 60
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=91.20 E-value=0.2 Score=40.22 Aligned_cols=48 Identities=29% Similarity=0.288 Sum_probs=35.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC-CCH--------------HHHHh----hhcCCCCHHHHHHHHHH
Q 018343 108 KKGVPWTEEEHRLFLIGLQKLGK-GDW--------------RGIAR----NYVMSRTPTQVASHAQK 155 (357)
Q Consensus 108 kk~~~WTeEEH~~FL~GL~kyGk-GdW--------------k~IA~----~~V~TRTp~QVrSHAQK 155 (357)
+....|.++=...|++||+.|-. |.| ..|+. ..-.+||.+||.||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHH
Confidence 45578999999999999999873 222 23331 23457999999999984
No 61
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=90.90 E-value=0.62 Score=38.15 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHhhhc----CCCCHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLGKGDWRGIARNYV----MSRTPTQVASHA 153 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyGkGdWk~IA~~~V----~TRTp~QVrSHA 153 (357)
..||.||-..+++..++|+- +|--|+..|- +.||..+++.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RY 76 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHH
Confidence 47999999999999999998 9999997665 479999998655
No 62
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=86.80 E-value=0.33 Score=33.91 Aligned_cols=20 Identities=30% Similarity=0.966 Sum_probs=17.9
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTRG 22 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (357)
-+|-.||..||-+|+||...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 37999999999999999874
No 63
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=86.66 E-value=0.25 Score=31.73 Aligned_cols=19 Identities=37% Similarity=0.962 Sum_probs=17.0
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTR 21 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (357)
.+|-.||..||-+|.|+.-
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4699999999999999864
No 64
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=83.48 E-value=0.5 Score=34.82 Aligned_cols=19 Identities=42% Similarity=1.066 Sum_probs=10.7
Q ss_pred ccCCCCCCCCCCCCCCCCC
Q 018343 4 RCSHCSNNGHNSRTCPTRG 22 (357)
Q Consensus 4 ~CS~Cg~~GHNsRTC~~~~ 22 (357)
+|-.||..||-+|.|+...
T Consensus 32 ~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 32 RCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp BCTTTCCBSSCGGGCCCCC
T ss_pred eeCCCCCCCCCcCCCcCCC
Confidence 4555555555555555543
No 65
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=80.94 E-value=0.61 Score=34.74 Aligned_cols=20 Identities=30% Similarity=0.966 Sum_probs=17.9
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTRG 22 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (357)
-+|-.||..||-+|.|+...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 36999999999999999874
No 66
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=80.53 E-value=0.68 Score=30.85 Aligned_cols=17 Identities=35% Similarity=0.886 Sum_probs=11.8
Q ss_pred ccCCCCCCCCCCCCCCC
Q 018343 4 RCSHCSNNGHNSRTCPT 20 (357)
Q Consensus 4 ~CS~Cg~~GHNsRTC~~ 20 (357)
+|-.||..||-+|.|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 56677777777777764
No 67
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=80.42 E-value=0.94 Score=30.48 Aligned_cols=16 Identities=38% Similarity=1.049 Sum_probs=9.9
Q ss_pred ccCCCCCCCCCCCCCC
Q 018343 4 RCSHCSNNGHNSRTCP 19 (357)
Q Consensus 4 ~CS~Cg~~GHNsRTC~ 19 (357)
+|-.||..||-+|.|+
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 4556666666666665
No 68
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=78.07 E-value=1.2 Score=29.70 Aligned_cols=17 Identities=35% Similarity=0.886 Sum_probs=15.2
Q ss_pred ccCCCCCCCCCCCCCCC
Q 018343 4 RCSHCSNNGHNSRTCPT 20 (357)
Q Consensus 4 ~CS~Cg~~GHNsRTC~~ 20 (357)
+|-.||..||-+|.|++
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 57789999999999985
No 69
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=77.02 E-value=0.98 Score=32.30 Aligned_cols=18 Identities=28% Similarity=0.916 Sum_probs=11.6
Q ss_pred CccCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPT 20 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~ 20 (357)
.+|-.||..||-+|.|+.
T Consensus 13 ~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCC
Confidence 356666666666666654
No 70
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=75.80 E-value=1.2 Score=32.80 Aligned_cols=22 Identities=27% Similarity=0.739 Sum_probs=19.5
Q ss_pred CCCccCCCCCCCCCCCCCCCCC
Q 018343 1 MTRRCSHCSNNGHNSRTCPTRG 22 (357)
Q Consensus 1 m~R~CS~Cg~~GHNsRTC~~~~ 22 (357)
|..+|-.||..||-+|.|+...
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTTT
T ss_pred CCCcccccCCCCeehhhCcCCc
Confidence 4578999999999999999874
No 71
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=75.31 E-value=1.3 Score=31.31 Aligned_cols=18 Identities=39% Similarity=1.032 Sum_probs=11.6
Q ss_pred CccCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPT 20 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~ 20 (357)
.+|-.||..||-+|.|+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 456666666666666654
No 72
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=75.24 E-value=1.5 Score=31.00 Aligned_cols=19 Identities=37% Similarity=0.959 Sum_probs=17.0
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTR 21 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (357)
..|-.||..||-+|.|+.+
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 3588999999999999986
No 73
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=74.46 E-value=1.4 Score=29.56 Aligned_cols=16 Identities=31% Similarity=0.922 Sum_probs=14.3
Q ss_pred cCCCCCCCCCCCCCCC
Q 018343 5 CSHCSNNGHNSRTCPT 20 (357)
Q Consensus 5 CS~Cg~~GHNsRTC~~ 20 (357)
|-.||..||-+|.|++
T Consensus 24 C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 24 CWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CTTTCCSSSCTTTSCC
T ss_pred cccCCCCCCccCcCcC
Confidence 6689999999999984
No 74
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=73.02 E-value=8.7 Score=36.39 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHcC--CCCHHHHHhh-hcCCCCHHHHHHHHH
Q 018343 111 VPWTEEEHRLFLIGLQKLG--KGDWRGIARN-YVMSRTPTQVASHAQ 154 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~kyG--kGdWk~IA~~-~V~TRTp~QVrSHAQ 154 (357)
+.||+-|-+.|+.+|.+|| .++|..|++. -+..|+...++.-++
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 5799999999999999999 4799999643 255688877765444
No 75
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=70.41 E-value=7.1 Score=36.86 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=24.9
Q ss_pred CHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 018343 132 DWRGIARNYVMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 132 dWk~IA~~~V~TRTp~QVrSHAQKYF~r~ 160 (357)
.|+.|| .+.+.||...+|.++.|+....
T Consensus 173 ~fk~ia-~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFA-EEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHH-HHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHH-HHCCCCChhhHHHHHHHHHhhc
Confidence 699999 5999999999999999887654
No 76
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=69.74 E-value=1.8 Score=30.89 Aligned_cols=19 Identities=32% Similarity=0.962 Sum_probs=17.2
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTR 21 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (357)
..|-.||..||-+|.|+..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 4699999999999999976
No 77
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=69.60 E-value=2.8 Score=30.41 Aligned_cols=20 Identities=20% Similarity=0.637 Sum_probs=15.6
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTRG 22 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (357)
.+|-.||..||-+|.|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTT
T ss_pred cceeECCCCCCccCcCCCcc
Confidence 56888888888888888763
No 78
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=68.08 E-value=1.1 Score=32.65 Aligned_cols=21 Identities=24% Similarity=0.726 Sum_probs=0.0
Q ss_pred CCccCCCCCCCCCCCCCCCCC
Q 018343 2 TRRCSHCSNNGHNSRTCPTRG 22 (357)
Q Consensus 2 ~R~CS~Cg~~GHNsRTC~~~~ 22 (357)
+++|-.||..||-+|.|+...
T Consensus 1 G~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 1 GGSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp ---------------------
T ss_pred CCccccCCCCCcCHhhCcCCC
Confidence 478999999999999999874
No 79
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.52 E-value=3.5 Score=30.49 Aligned_cols=17 Identities=29% Similarity=0.909 Sum_probs=10.3
Q ss_pred CccCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCP 19 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~ 19 (357)
.+|-.||..||-+|.|+
T Consensus 8 ~~C~~Cg~~GH~a~~C~ 24 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECK 24 (63)
T ss_dssp CCCSSSCCSSSCTTTCC
T ss_pred CcccccCCCCcChhhCC
Confidence 34666666666666665
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.78 E-value=4.6 Score=29.84 Aligned_cols=19 Identities=26% Similarity=0.894 Sum_probs=17.1
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTR 21 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (357)
++|-.||..||-+|.|+..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 4688999999999999976
No 81
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=59.09 E-value=3.8 Score=31.57 Aligned_cols=18 Identities=28% Similarity=0.835 Sum_probs=12.8
Q ss_pred CccCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPT 20 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~ 20 (357)
.+|-.||..||-+|.|+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 357777777777777773
No 82
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=58.45 E-value=4.4 Score=31.98 Aligned_cols=20 Identities=25% Similarity=0.697 Sum_probs=18.1
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTRG 22 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (357)
..|-.||..||=+|.|+..+
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCC
T ss_pred CeecccCCCCcCcccCCccc
Confidence 57999999999999999874
No 83
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=56.23 E-value=5.7 Score=30.56 Aligned_cols=20 Identities=25% Similarity=0.858 Sum_probs=17.5
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTRG 22 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (357)
++|-.||..||-+|.|+...
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTGG
T ss_pred CccCCcCCcCCccCcCcCCc
Confidence 46889999999999999763
No 84
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=53.56 E-value=5.3 Score=34.28 Aligned_cols=19 Identities=26% Similarity=0.775 Sum_probs=17.2
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTR 21 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (357)
.+|-.||..||-+|.|+..
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSC
T ss_pred CcccEeCCccchhhhCCCC
Confidence 3699999999999999975
No 85
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=51.68 E-value=7.2 Score=31.78 Aligned_cols=19 Identities=26% Similarity=0.845 Sum_probs=15.0
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTR 21 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (357)
.+|-.||..||.+|.|+..
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCS
T ss_pred ccCCCCCcCCcchhhCCCc
Confidence 4677888888888888865
No 86
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.19 E-value=8 Score=28.55 Aligned_cols=20 Identities=35% Similarity=0.875 Sum_probs=17.7
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 018343 2 TRRCSHCSNNGHNSRTCPTR 21 (357)
Q Consensus 2 ~R~CS~Cg~~GHNsRTC~~~ 21 (357)
...|=-||.-||-.+-|++.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 35799999999999999965
No 87
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=45.61 E-value=6.5 Score=31.00 Aligned_cols=19 Identities=26% Similarity=0.845 Sum_probs=16.7
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTR 21 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (357)
..|-.||..||-+|.||..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4799999999999999975
No 88
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=43.64 E-value=11 Score=30.57 Aligned_cols=19 Identities=37% Similarity=1.032 Sum_probs=13.6
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 018343 3 RRCSHCSNNGHNSRTCPTR 21 (357)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (357)
+.|-.|+..||.+|.||..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~~ 23 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPHI 23 (124)
T ss_dssp SCCSSCSSSSCCTTTTTSC
T ss_pred CcccCCCCCCcCcccCcCC
Confidence 4577777777777777764
No 89
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=36.13 E-value=40 Score=27.41 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=22.5
Q ss_pred CCHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 018343 131 GDWRGIARNYVMSRTPTQVASHAQKYFIRQ 160 (357)
Q Consensus 131 GdWk~IA~~~V~TRTp~QVrSHAQKYF~r~ 160 (357)
+.|+.|++ -++-....+++.|+.||+.-.
T Consensus 71 ~~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 71 QQWSMVAQ-RLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp TCHHHHHH-HHTSCCTTHHHHHHHHHHSHH
T ss_pred CcHHHHHH-HhCCChHHHHHHHHHHHHHHH
Confidence 58999996 555555899999999996643
No 90
>4g0a_A Non-structural protein 2; RNA triphosphatase, RNA binding, hydrolase activity, nucleot binding, metal ION binding, HOST cell cytoplasm; 2.10A {Simian 11 rotavirus} PDB: 1l9v_A 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A* 4g0j_A
Probab=35.22 E-value=12 Score=36.21 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHH---------HcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhcccCcCc
Q 018343 110 GVPWTEEEHRLFLIGLQ---------KLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRRSS 171 (357)
Q Consensus 110 ~~~WTeEEH~~FL~GL~---------kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~~~~krKrR~S 171 (357)
..+=.+.+.+.|..-|+ .+|+|.||.+- -.||+.||-+.|...++.+|+++..+
T Consensus 194 ~~pi~d~~~kelvAelRwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~~ 256 (317)
T 4g0a_A 194 DKPISDVHVKELVAELRWQYNKFAVITHGKGHYRIVK--------YSSVANHADRVYATFKSNVKTGVNND 256 (317)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTEEEECCSSSSEEEEE--------GGGHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHHHhhcceEEEecCCccEEEEe--------hHHhhhhHHHHHHHHhhhhccCCCcc
Confidence 35667777788877776 37899998875 57999999999999998877664433
No 91
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C}
Probab=31.61 E-value=10 Score=36.50 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHH---------HcCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhcccCc
Q 018343 111 VPWTEEEHRLFLIGLQ---------KLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRR 169 (357)
Q Consensus 111 ~~WTeEEH~~FL~GL~---------kyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~~~~krKrR 169 (357)
.+=.+.-.+.|..-|+ .+|+|.||.+- -.||++||-+.|...++.+|+++-
T Consensus 192 ~pi~D~~~kelvAelRwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~ 251 (312)
T 2gu0_A 192 TDIPDRNQTAFAAYIRYNFNKFAAISHGKRHWRLVL--------HSQLMSHAERLDRKIKSDKKHGRQ 251 (312)
T ss_dssp SCCCHHHHHHHHHHHHHHSTTEEEECSSSSEEEEEE--------GGGHHHHHHHHHHHHHCCC-----
T ss_pred CcCchHHHHHHHHHHHHhhcceEEEecCCccEEEEe--------hHHhhhhHHHHHHHHhhhhhcCCC
Confidence 3445544555555554 37899998875 579999999999999987766544
No 92
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=29.88 E-value=76 Score=25.35 Aligned_cols=24 Identities=8% Similarity=0.433 Sum_probs=14.2
Q ss_pred cccccCCCCCCHHHHHHHHHHHHH
Q 018343 104 RCERKKGVPWTEEEHRLFLIGLQK 127 (357)
Q Consensus 104 ~~~rkk~~~WTeEEH~~FL~GL~k 127 (357)
+..|+.+..||.+.-..+....+.
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~ 30 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER 30 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc
Confidence 356677889999888777766654
No 93
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=28.93 E-value=62 Score=26.36 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=21.3
Q ss_pred CCCHHHHHhhhcCCCC----HHHHHHHHHHHHHHHh
Q 018343 130 KGDWRGIARNYVMSRT----PTQVASHAQKYFIRQS 161 (357)
Q Consensus 130 kGdWk~IA~~~V~TRT----p~QVrSHAQKYF~r~~ 161 (357)
.+.|+.|++ .++-.. ..+++.|++||+.-..
T Consensus 61 ~~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 61 DRRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp TTTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred cCcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 358999996 444322 5788888888866443
No 94
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=27.08 E-value=1e+02 Score=24.34 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=21.0
Q ss_pred CCHHHHHhhhcCCCC---HHHHHHHHHHHHHHHh
Q 018343 131 GDWRGIARNYVMSRT---PTQVASHAQKYFIRQS 161 (357)
Q Consensus 131 GdWk~IA~~~V~TRT---p~QVrSHAQKYF~r~~ 161 (357)
+.|+.|++.+--..+ ..+++.|+.||+.-..
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE 99 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFE 99 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 489999964422233 4788888888876543
No 95
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=26.84 E-value=1.3e+02 Score=24.29 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=34.8
Q ss_pred ccccCCCCCCHHH-----------HHHHHHHHHHcCCC----CHHHH--HhhhcCCCCHHHHHHHHHHHHHH
Q 018343 105 CERKKGVPWTEEE-----------HRLFLIGLQKLGKG----DWRGI--ARNYVMSRTPTQVASHAQKYFIR 159 (357)
Q Consensus 105 ~~rkk~~~WTeEE-----------H~~FL~GL~kyGkG----dWk~I--A~~~V~TRTp~QVrSHAQKYF~r 159 (357)
.+.-+++.||.|+ .+-++.-|+..|.- .|+.. -++..+|+.-.|...-+.++|..
T Consensus 8 ~~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVaKtanK~qLiaAY~~lfE~ 79 (88)
T 2lc3_A 8 KENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRKNRNCSQLIAAYKDFCEH 79 (88)
T ss_dssp HCSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4556789999999 44566667776631 23221 12455788899997766666653
No 96
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=24.88 E-value=57 Score=27.08 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=23.6
Q ss_pred CCHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q 018343 131 GDWRGIARNYVMSRTPTQVASHAQKYFIRQS 161 (357)
Q Consensus 131 GdWk~IA~~~V~TRTp~QVrSHAQKYF~r~~ 161 (357)
+.|+.|++ -++-....+++.|+.||+.-..
T Consensus 70 k~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 70 QQWSMVAQ-RLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHCCChHHHHHHHHHHHHHHHH
Confidence 58999996 5555559999999999987554
No 97
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=24.55 E-value=74 Score=26.13 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=20.9
Q ss_pred CCHHHHHhhhcCCCC----HHHHHHHHHHHHHHHh
Q 018343 131 GDWRGIARNYVMSRT----PTQVASHAQKYFIRQS 161 (357)
Q Consensus 131 GdWk~IA~~~V~TRT----p~QVrSHAQKYF~r~~ 161 (357)
+.|+.|++ .++--+ ..+++.|+.||+.-..
T Consensus 73 ~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 73 KKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp TCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 49999996 444333 4688888888866544
No 98
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.45 E-value=2.6e+02 Score=22.79 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=22.1
Q ss_pred CCCHHHHHhhhcCCC-C---HHHHHHHHHHHHHHHhh
Q 018343 130 KGDWRGIARNYVMSR-T---PTQVASHAQKYFIRQSN 162 (357)
Q Consensus 130 kGdWk~IA~~~V~TR-T---p~QVrSHAQKYF~r~~~ 162 (357)
++.|+.|++ .++-. + ..+++.|++||+.-...
T Consensus 63 ~k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 63 DRKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp TTTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred CCcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 358999996 44432 2 36888889988775554
No 99
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=24.04 E-value=2.1e+02 Score=20.84 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=33.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCH---HHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhccc
Q 018343 105 CERKKGVPWTEEEHRLFLIGLQKLGKGDW---RGIARNYVMSRTPTQVASHAQKYFIRQSNATRRK 167 (357)
Q Consensus 105 ~~rkk~~~WTeEEH~~FL~GL~kyGkGdW---k~IA~~~V~TRTp~QVrSHAQKYF~r~~~~~krK 167 (357)
+.++.++.+|.+.-..+....+..-.=+- ..||+ .++ -+..|| +.+|.......|++
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~-~l~-l~~~qV----~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAH-EVG-LKKRVV----QVWFQNTRARERKS 75 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHH-HHT-SCHHHH----HHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHC-cCHHHh----HHHhHHHHHhHhhh
Confidence 45566778899887777777665432222 35563 333 567887 56776554333333
No 100
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=23.62 E-value=75 Score=26.44 Aligned_cols=31 Identities=10% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCHHHHHhhhcCCC----CHHHHHHHHHHHHHHHh
Q 018343 131 GDWRGIARNYVMSR----TPTQVASHAQKYFIRQS 161 (357)
Q Consensus 131 GdWk~IA~~~V~TR----Tp~QVrSHAQKYF~r~~ 161 (357)
+.|+.|++.+--.+ ...+++.|+.||+.-..
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 59999996442222 25789999999977544
No 101
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=22.84 E-value=1e+02 Score=25.34 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=21.8
Q ss_pred CCHHHHHhhhcCCC----CHHHHHHHHHHHHHHHh
Q 018343 131 GDWRGIARNYVMSR----TPTQVASHAQKYFIRQS 161 (357)
Q Consensus 131 GdWk~IA~~~V~TR----Tp~QVrSHAQKYF~r~~ 161 (357)
+.|+.|++.+--.. ...+++.|+.||+.-..
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 48999996543222 25789999999976544
No 102
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.35 E-value=2.4e+02 Score=20.84 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=36.5
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCC---CHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhcccCc
Q 018343 105 CERKKGVPWTEEEHRLFLIGLQKLGKG---DWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRR 169 (357)
Q Consensus 105 ~~rkk~~~WTeEEH~~FL~GL~kyGkG---dWk~IA~~~V~TRTp~QVrSHAQKYF~r~~~~~krKrR 169 (357)
..|+.++.+|.+....+...++..-.= .=..||+ .++ -+..|| |.+|.......|+.+.
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~-~l~-L~~~qV----~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAE-SLG-LSQLQV----KTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHH-HHC-CCHHHH----HHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HhC-CCHHHe----eeccHHHHHHhhcccC
Confidence 556677899999988888887764432 2234563 333 578888 5677755543333333
No 103
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=20.43 E-value=63 Score=25.72 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=20.3
Q ss_pred CCHHHHHhhhcC----CCCHHHHHHHHHHHHHH
Q 018343 131 GDWRGIARNYVM----SRTPTQVASHAQKYFIR 159 (357)
Q Consensus 131 GdWk~IA~~~V~----TRTp~QVrSHAQKYF~r 159 (357)
+.|+.|++.+-- |-...+++.|++||+.-
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 589999965432 22347899999998653
No 104
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=20.17 E-value=89 Score=26.46 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCHHHHHhhhcCCC----CHHHHHHHHHHHHHHHh
Q 018343 131 GDWRGIARNYVMSR----TPTQVASHAQKYFIRQS 161 (357)
Q Consensus 131 GdWk~IA~~~V~TR----Tp~QVrSHAQKYF~r~~ 161 (357)
+.|+.|++.+--.. ...+++.++.||+.-..
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 58999996443222 25788888888865433
Done!