Query 018344
Match_columns 357
No_of_seqs 321 out of 2555
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:13:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.6 1.1E-14 2.4E-19 152.0 10.0 43 28-70 85-130 (968)
2 PLN00113 leucine-rich repeat r 99.5 8.1E-15 1.8E-19 153.0 8.3 82 34-116 138-223 (968)
3 PLN03210 Resistant to P. syrin 99.5 7E-13 1.5E-17 139.8 14.0 110 25-136 623-734 (1153)
4 KOG4194 Membrane glycoprotein 99.3 6.3E-13 1.4E-17 123.3 3.1 40 260-305 387-426 (873)
5 KOG0444 Cytoskeletal regulator 99.3 3.6E-14 7.9E-19 132.5 -5.3 150 26-183 93-254 (1255)
6 PLN03210 Resistant to P. syrin 99.2 4.4E-11 9.6E-16 126.3 8.4 194 12-212 635-842 (1153)
7 cd00116 LRR_RI Leucine-rich re 99.0 3.1E-10 6.7E-15 103.5 5.7 68 264-334 249-316 (319)
8 KOG4194 Membrane glycoprotein 99.0 9.2E-11 2E-15 109.3 1.5 197 11-212 171-408 (873)
9 PRK15387 E3 ubiquitin-protein 99.0 7.2E-10 1.6E-14 110.2 7.3 172 17-211 205-377 (788)
10 KOG4341 F-box protein containi 98.9 2.4E-10 5.2E-15 102.5 -1.6 175 37-212 139-337 (483)
11 KOG0444 Cytoskeletal regulator 98.8 2E-11 4.2E-16 114.6 -9.0 77 15-92 128-206 (1255)
12 KOG2120 SCF ubiquitin ligase, 98.8 7.1E-10 1.5E-14 95.5 0.4 202 58-336 185-395 (419)
13 KOG2120 SCF ubiquitin ligase, 98.8 2.3E-10 5E-15 98.5 -4.6 197 6-205 154-373 (419)
14 PRK15387 E3 ubiquitin-protein 98.7 3.8E-08 8.2E-13 98.2 9.5 168 12-205 223-392 (788)
15 cd00116 LRR_RI Leucine-rich re 98.7 5.9E-09 1.3E-13 95.0 3.3 197 11-209 23-263 (319)
16 PRK15370 E3 ubiquitin-protein 98.7 3.1E-08 6.8E-13 99.1 8.2 175 17-210 182-360 (754)
17 KOG3207 Beta-tubulin folding c 98.7 4E-09 8.6E-14 95.3 0.3 171 34-205 119-311 (505)
18 KOG0617 Ras suppressor protein 98.7 9.9E-10 2.2E-14 87.4 -3.5 154 27-205 25-183 (264)
19 KOG0618 Serine/threonine phosp 98.6 1.4E-09 3.1E-14 106.3 -4.0 30 19-48 247-276 (1081)
20 PF14580 LRR_9: Leucine-rich r 98.6 2.7E-08 5.8E-13 81.6 4.0 126 34-182 17-148 (175)
21 KOG0617 Ras suppressor protein 98.6 1.2E-09 2.6E-14 86.9 -4.2 141 19-184 39-183 (264)
22 PRK15370 E3 ubiquitin-protein 98.6 9.4E-08 2E-12 95.7 7.0 175 18-211 204-382 (754)
23 KOG0618 Serine/threonine phosp 98.6 7.9E-09 1.7E-13 101.3 -0.6 185 9-206 41-230 (1081)
24 KOG3207 Beta-tubulin folding c 98.5 2.2E-08 4.8E-13 90.6 0.7 85 32-116 168-257 (505)
25 KOG4341 F-box protein containi 98.5 2.2E-08 4.8E-13 90.1 -0.8 136 58-211 138-284 (483)
26 KOG0472 Leucine-rich repeat pr 98.4 2.7E-09 5.9E-14 95.5 -7.3 182 17-205 72-285 (565)
27 KOG4237 Extracellular matrix p 98.4 3.3E-08 7.1E-13 88.5 -0.9 146 12-160 45-199 (498)
28 KOG1909 Ran GTPase-activating 98.1 1E-06 2.2E-11 77.9 2.2 39 56-94 90-131 (382)
29 KOG1259 Nischarin, modulator o 98.1 4.5E-07 9.7E-12 78.7 -0.5 128 56-185 282-410 (490)
30 KOG0472 Leucine-rich repeat pr 98.1 1.8E-08 3.9E-13 90.3 -9.7 39 293-340 503-541 (565)
31 PF14580 LRR_9: Leucine-rich r 98.1 4.4E-06 9.4E-11 68.6 4.4 100 15-116 21-124 (175)
32 KOG1909 Ran GTPase-activating 98.0 1.4E-06 3E-11 77.1 0.6 186 3-205 48-280 (382)
33 KOG3665 ZYG-1-like serine/thre 98.0 2.7E-06 5.8E-11 84.6 2.2 147 36-183 122-284 (699)
34 KOG4658 Apoptotic ATPase [Sign 97.9 1.9E-06 4.2E-11 87.8 0.1 199 11-211 568-786 (889)
35 KOG1259 Nischarin, modulator o 97.9 2.7E-06 5.9E-11 73.9 0.1 119 36-162 284-412 (490)
36 PF13855 LRR_8: Leucine rich r 97.8 3.1E-05 6.7E-10 51.9 4.5 50 20-69 8-60 (61)
37 KOG2982 Uncharacterized conser 97.8 8.3E-06 1.8E-10 70.8 1.6 178 11-188 71-263 (418)
38 KOG1859 Leucine-rich repeat pr 97.8 9.8E-07 2.1E-11 84.9 -4.5 155 29-185 102-290 (1096)
39 COG4886 Leucine-rich repeat (L 97.8 1.7E-05 3.6E-10 74.7 3.3 146 32-182 112-263 (394)
40 PF13855 LRR_8: Leucine rich r 97.8 1.1E-05 2.5E-10 54.1 1.4 58 36-94 1-60 (61)
41 KOG4237 Extracellular matrix p 97.7 1.1E-05 2.5E-10 72.6 1.7 55 17-71 71-129 (498)
42 COG4886 Leucine-rich repeat (L 97.7 2E-05 4.4E-10 74.1 2.6 164 18-187 121-290 (394)
43 KOG1947 Leucine rich repeat pr 97.6 9.9E-06 2.2E-10 78.1 -0.5 85 32-116 210-306 (482)
44 PRK15386 type III secretion pr 97.5 0.00016 3.4E-09 67.0 5.1 155 34-207 50-212 (426)
45 KOG1947 Leucine rich repeat pr 97.5 3E-05 6.6E-10 74.7 0.4 101 35-136 187-304 (482)
46 PLN03150 hypothetical protein; 97.4 0.00029 6.3E-09 70.1 6.2 78 38-116 420-501 (623)
47 KOG0532 Leucine-rich repeat (L 97.3 9.6E-06 2.1E-10 76.3 -4.8 94 19-116 81-177 (722)
48 PF12799 LRR_4: Leucine Rich r 97.2 0.00028 6E-09 43.7 2.3 34 37-70 2-36 (44)
49 KOG3665 ZYG-1-like serine/thre 97.2 0.00031 6.7E-09 70.2 3.8 123 82-205 121-260 (699)
50 KOG2982 Uncharacterized conser 97.1 0.00031 6.7E-09 61.3 3.0 84 31-115 40-131 (418)
51 KOG4658 Apoptotic ATPase [Sign 97.1 0.00013 2.8E-09 74.8 0.1 108 26-137 536-652 (889)
52 PRK15386 type III secretion pr 96.9 0.0015 3.3E-08 60.6 5.7 134 56-205 50-187 (426)
53 KOG2739 Leucine-rich acidic nu 96.8 0.00054 1.2E-08 58.8 1.5 115 2-116 4-127 (260)
54 KOG0532 Leucine-rich repeat (L 96.7 0.00039 8.5E-09 65.8 -0.4 135 23-163 108-248 (722)
55 PLN03150 hypothetical protein; 96.7 0.0021 4.6E-08 64.1 4.7 99 17-116 422-526 (623)
56 KOG0531 Protein phosphatase 1, 96.6 0.00017 3.6E-09 68.4 -3.4 81 32-116 91-173 (414)
57 KOG1859 Leucine-rich repeat pr 96.4 4.2E-05 9.1E-10 74.1 -8.4 16 146-161 276-291 (1096)
58 KOG1644 U2-associated snRNP A' 96.4 0.01 2.2E-07 49.2 6.0 81 35-116 41-124 (233)
59 PF12799 LRR_4: Leucine Rich r 96.2 0.0032 6.9E-08 38.9 2.0 35 58-94 1-35 (44)
60 KOG2739 Leucine-rich acidic nu 96.2 0.0013 2.7E-08 56.5 -0.1 100 82-181 42-150 (260)
61 COG5238 RNA1 Ran GTPase-activa 96.1 0.0044 9.5E-08 53.7 2.9 88 28-116 50-168 (388)
62 KOG1644 U2-associated snRNP A' 96.1 0.01 2.3E-07 49.1 4.7 76 18-95 47-125 (233)
63 KOG0531 Protein phosphatase 1, 95.6 0.0022 4.7E-08 60.8 -1.2 124 35-161 71-198 (414)
64 KOG3864 Uncharacterized conser 95.4 0.0029 6.4E-08 52.3 -0.8 91 24-114 89-185 (221)
65 KOG2123 Uncharacterized conser 95.3 0.0028 6.1E-08 55.0 -1.3 61 126-186 40-100 (388)
66 COG5238 RNA1 Ran GTPase-activa 95.3 0.012 2.7E-07 51.0 2.4 172 34-205 28-252 (388)
67 KOG4579 Leucine-rich repeat (L 94.4 0.0065 1.4E-07 47.3 -1.3 81 13-95 26-112 (177)
68 KOG2123 Uncharacterized conser 94.3 0.0084 1.8E-07 52.2 -1.0 77 34-111 39-123 (388)
69 PF07723 LRR_2: Leucine Rich R 92.2 0.17 3.7E-06 27.2 2.4 25 59-83 1-26 (26)
70 KOG4579 Leucine-rich repeat (L 91.1 0.027 5.8E-07 43.9 -2.1 54 17-70 57-112 (177)
71 PF00560 LRR_1: Leucine Rich R 89.4 0.19 4.2E-06 25.6 1.0 14 37-50 1-14 (22)
72 PF13516 LRR_6: Leucine Rich r 89.2 0.3 6.4E-06 25.5 1.6 22 57-78 1-22 (24)
73 PF13306 LRR_5: Leucine rich r 88.3 0.59 1.3E-05 35.9 3.5 84 28-113 3-89 (129)
74 KOG3864 Uncharacterized conser 88.2 0.098 2.1E-06 43.5 -1.0 62 145-206 121-187 (221)
75 PF08387 FBD: FBD; InterPro: 88.0 1.1 2.3E-05 28.5 3.9 40 293-334 12-51 (51)
76 PF13504 LRR_7: Leucine rich r 83.7 0.86 1.9E-05 21.6 1.4 11 37-47 2-12 (17)
77 smart00367 LRR_CC Leucine-rich 83.4 1.5 3.2E-05 23.3 2.5 20 58-77 2-22 (26)
78 smart00368 LRR_RI Leucine rich 81.5 1.7 3.6E-05 23.7 2.3 22 58-79 2-23 (28)
79 KOG3763 mRNA export factor TAP 80.6 2.2 4.7E-05 41.1 4.1 87 76-180 211-307 (585)
80 PF13306 LRR_5: Leucine rich r 79.3 1.2 2.6E-05 34.1 1.7 57 53-113 7-66 (129)
81 smart00579 FBD domain in FBox 67.8 9.1 0.0002 26.0 3.7 40 295-336 5-44 (72)
82 smart00369 LRR_TYP Leucine-ric 55.1 8.7 0.00019 20.1 1.4 13 58-70 2-14 (26)
83 smart00370 LRR Leucine-rich re 55.1 8.7 0.00019 20.1 1.4 13 58-70 2-14 (26)
84 KOG3763 mRNA export factor TAP 54.7 7.9 0.00017 37.5 1.9 62 55-116 215-281 (585)
85 smart00365 LRR_SD22 Leucine-ri 40.9 20 0.00043 19.2 1.3 13 58-70 2-14 (26)
86 KOG0473 Leucine-rich repeat pr 27.0 1.9 4E-05 37.1 -6.2 45 26-70 31-77 (326)
87 KOG0473 Leucine-rich repeat pr 20.3 5.6 0.00012 34.3 -4.6 83 8-94 39-122 (326)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=1.1e-14 Score=152.05 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=22.3
Q ss_pred cCcccccCCCccEEEeeccccCC--CCC-ccCCCCCceEEeecccc
Q 018344 28 LPQIVFYLKSIYVLDFEFCKLEP--PRS-TVTLFSLRKLCLSFVHV 70 (357)
Q Consensus 28 lP~~i~~~~~L~~L~Ls~~~~~~--p~~-~~~l~~L~~L~L~~~~~ 70 (357)
+|..+..+++|+.|+|++|.+.. |.. +..+++|++|+|++|.+
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l 130 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc
Confidence 34445555666666666655432 322 22555555555555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=8.1e-15 Score=153.05 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=40.0
Q ss_pred cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccE
Q 018344 34 YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKE 109 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~ 109 (357)
.+++|++|+|++|.+.. |..+.++++|++|+|++|.+... ++..++++++|++|++++|.....+ .+.++++|+.
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 34556666666655432 44455566666666666544221 2333445555666666555422111 1223345555
Q ss_pred EEecccC
Q 018344 110 IKLDSNR 116 (357)
Q Consensus 110 L~l~~c~ 116 (357)
|++++|.
T Consensus 217 L~L~~n~ 223 (968)
T PLN00113 217 IYLGYNN 223 (968)
T ss_pred EECcCCc
Confidence 5555444
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=7e-13 Score=139.75 Aligned_cols=110 Identities=17% Similarity=0.116 Sum_probs=52.4
Q ss_pred ceecCcccccCCCccEEEeecccc-CCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcC-
Q 018344 25 IYNLPQIVFYLKSIYVLDFEFCKL-EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLL- 102 (357)
Q Consensus 25 ~~~lP~~i~~~~~L~~L~Ls~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~- 102 (357)
...+|..+..+++|+.|+|+++.. ...+.+..+++|++|+|++|..- ..++..+.++++|+.|++++|..++.++..
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 334444444455555555554432 22113445555555555554321 123334455556666666666555544332
Q ss_pred CCCCccEEEecccCCCcceeEeecceeeEEEEee
Q 018344 103 GLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKV 136 (357)
Q Consensus 103 ~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~ 136 (357)
++++|+.|++++|. .+..+....++|+.|.+.+
T Consensus 702 ~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 702 NLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDE 734 (1153)
T ss_pred CCCCCCEEeCCCCC-CccccccccCCcCeeecCC
Confidence 34556666666665 3333322234555555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.32 E-value=6.3e-13 Score=123.34 Aligned_cols=40 Identities=10% Similarity=0.005 Sum_probs=22.1
Q ss_pred HHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEe
Q 018344 260 LLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVL 305 (357)
Q Consensus 260 ~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~ 305 (357)
.+.+++.|++|.+...+ ...++. ...-.+++|+||++.++
T Consensus 387 ~f~gl~~LrkL~l~gNq--lk~I~k----rAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQ--LKSIPK----RAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhccchhhhheeecCce--eeecch----hhhccCcccceecCCCC
Confidence 34557777777665443 222222 22235677888887754
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.32 E-value=3.6e-14 Score=132.50 Aligned_cols=150 Identities=20% Similarity=0.272 Sum_probs=87.5
Q ss_pred eecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHH-HHHcCCCCccEEeeecCCCCCccC--c
Q 018344 26 YNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIR-DMVAGCPLIEYININNCPGLKSLQ--L 101 (357)
Q Consensus 26 ~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~-~l~~~~~~L~~L~L~~c~~l~~l~--l 101 (357)
..+|..++.++.|+.|+||+|.+.. |..+..-.++-+|+||+|++ +.++ .++-++.-|-.|+|+++. +..++ +
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I--etIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~ 169 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI--ETIPNSLFINLTDLLFLDLSNNR-LEMLPPQI 169 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc--ccCCchHHHhhHhHhhhccccch-hhhcCHHH
Confidence 4677777777777777777777665 66666677777777777754 2222 233355556667777654 33332 2
Q ss_pred CCCCCccEEEecccCC---CcceeEeecceeeEEEEeec-----CCCceeeccccccccceeecccccCHHHHHHHhccC
Q 018344 102 LGLNKLKEIKLDSNRC---GLERVYINGVNVHSVDIKVY-----LEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISEL 173 (357)
Q Consensus 102 ~~~~~L~~L~l~~c~~---~l~~~~~~~p~L~~L~l~~~-----~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 173 (357)
..+..|++|++++|.. .+... -...+|+.|+++++ .+| ..+.++.||..++++.|++ ..++..+-++
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~P--tsld~l~NL~dvDlS~N~L--p~vPecly~l 244 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIP--TSLDDLHNLRDVDLSENNL--PIVPECLYKL 244 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCC--CchhhhhhhhhccccccCC--CcchHHHhhh
Confidence 2345566666666651 11110 01224445555552 223 4566677777777777766 4456666667
Q ss_pred Cccceeeccc
Q 018344 174 PFLEYLALHY 183 (357)
Q Consensus 174 ~~L~~L~l~~ 183 (357)
++|+.|++++
T Consensus 245 ~~LrrLNLS~ 254 (1255)
T KOG0444|consen 245 RNLRRLNLSG 254 (1255)
T ss_pred hhhheeccCc
Confidence 7777777754
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.18 E-value=4.4e-11 Score=126.27 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=133.3
Q ss_pred CCeEEEEEecCC-cceecCcccccCCCccEEEeeccccC-C-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCC-RIYNLPQIVFYLKSIYVLDFEFCKLE-P-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~-~~~~lP~~i~~~~~L~~L~Ls~~~~~-~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.++.+++ ++. ....+|. +..+++|+.|+|++|... . |..+.++++|+.|++++|..- ..++..+ ++++|+.|
T Consensus 635 ~Lk~L~L--s~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 635 GLRNIDL--RGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI-NLKSLYRL 709 (1153)
T ss_pred CCCEEEC--CCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC-CCCCCCEE
Confidence 3444444 332 3456674 677899999999998643 3 778899999999999998431 1222222 68899999
Q ss_pred eeecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecC--------CCc-eeeccccccccceeeccc
Q 018344 89 NINNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYL--------EPC-EVNVSSCKNLTHLRLDGL 159 (357)
Q Consensus 89 ~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~--------~~~-~~~~~~~~~L~~L~L~~~ 159 (357)
++++|..++.++-. ..+|++|+++++....-+..+.+++|++|.+.+.. .+. ......+++|+.|++++|
T Consensus 710 ~Lsgc~~L~~~p~~-~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 710 NLSGCSRLKSFPDI-STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred eCCCCCCccccccc-cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 99999877765432 26899999988862111112346778877776511 010 011223468999999987
Q ss_pred ccCHHHHHHHhccCCccceeeccccccccccccc--cccccEEEccccccccccc
Q 018344 160 SITDKWLYNQISELPFLEYLALHYCMKLRSINIS--SPRLKELVFERCEELVEFE 212 (357)
Q Consensus 160 ~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~c~~L~~~~ 212 (357)
.... .++..++++++|+.|++++|..++.+|.. .++|+.|++++|.+++.+.
T Consensus 789 ~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 789 PSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred CCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 5433 24566889999999999999988877754 5789999999998776543
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=3.1e-10 Score=103.50 Aligned_cols=68 Identities=12% Similarity=-0.105 Sum_probs=35.3
Q ss_pred cccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEeec
Q 018344 264 FNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEW 334 (357)
Q Consensus 264 l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~~ 334 (357)
...+++|.+..+..+.... ..+.+ ..+.+++|+++++..+. ............+....++++.|.++.
T Consensus 249 ~~~L~~L~l~~n~i~~~~~-~~l~~-~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 249 NISLLTLSLSCNDITDDGA-KDLAE-VLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred CCCceEEEccCCCCCcHHH-HHHHH-HHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 4677777776654332111 11111 12344678888888653 233332333334444447888888743
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.01 E-value=9.2e-11 Score=109.27 Aligned_cols=197 Identities=21% Similarity=0.215 Sum_probs=106.4
Q ss_pred CCCeEEEEEecCCcceecCcccc-cCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
+++.-..|+++.+....+-..-| ++.+|..|+|+.|.+.. | ..|.+|++|+.|+|..|.+.....- .+.++++|+.
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l-tFqgL~Sl~n 249 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL-TFQGLPSLQN 249 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh-hhcCchhhhh
Confidence 44555556667777777775444 47789999999998776 4 4667799999999999876322111 1345666666
Q ss_pred EeeecCCC--CCccCcC------------------------CCCCccEEEecccCCCcceeE----eecceeeEEEEeec
Q 018344 88 ININNCPG--LKSLQLL------------------------GLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVY 137 (357)
Q Consensus 88 L~L~~c~~--l~~l~l~------------------------~~~~L~~L~l~~c~~~l~~~~----~~~p~L~~L~l~~~ 137 (357)
|.|..|.. ++.-.+. ++..|+.|+++.|. ++.+. -.+++|+.|+++.+
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na--I~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA--IQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh--hheeecchhhhcccceeEecccc
Confidence 66655432 2222223 33444444444443 12221 12556666666553
Q ss_pred CCC-c-eeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccc---ccccc---ccccccEEEcccccccc
Q 018344 138 LEP-C-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL---RSINI---SSPRLKELVFERCEELV 209 (357)
Q Consensus 138 ~~~-~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l---~~l~~---~~~~L~~L~l~~c~~L~ 209 (357)
.+. + ...+..+..|+.|.|+.|.++ ..-...+.++.+|+.|++.++..- ++... ..++|++|.+.+. +++
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk 405 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLK 405 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eee
Confidence 221 0 123444555666666666552 112234555666666666543321 11111 1456666666665 555
Q ss_pred ccc
Q 018344 210 EFE 212 (357)
Q Consensus 210 ~~~ 212 (357)
.+.
T Consensus 406 ~I~ 408 (873)
T KOG4194|consen 406 SIP 408 (873)
T ss_pred ecc
Confidence 443
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.99 E-value=7.2e-10 Score=110.23 Aligned_cols=172 Identities=19% Similarity=0.091 Sum_probs=110.9
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
.||++......+|..+.. +|+.|++++|.+.. |. ..++|++|+|++|.++. ++. ..++|+.|++++|.
T Consensus 205 ~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~- 273 (788)
T PRK15387 205 VLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNP- 273 (788)
T ss_pred EEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccceeeccCCc-
Confidence 456677778889987754 79999999988776 43 36899999999997742 232 24688999998875
Q ss_pred CCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCc
Q 018344 96 LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPF 175 (357)
Q Consensus 96 l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 175 (357)
++.+.- ...+|+.|++++|. +..+....|+|+.|+++++.+..... ...+|+.|++++|.++. ++.+ .++
T Consensus 274 L~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~--LP~l---p~~ 343 (788)
T PRK15387 274 LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTS--LPTL---PSG 343 (788)
T ss_pred hhhhhh-chhhcCEEECcCCc--cccccccccccceeECCCCccccCCC--CcccccccccccCcccc--cccc---ccc
Confidence 444332 12578888888876 22222235678888887754331001 12357778888777732 3321 246
Q ss_pred cceeeccccccccccccccccccEEEcccccccccc
Q 018344 176 LEYLALHYCMKLRSINISSPRLKELVFERCEELVEF 211 (357)
Q Consensus 176 L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~L~~~ 211 (357)
|+.|++++ +.+..+|..+++|+.|.++++ .++.+
T Consensus 344 Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N-~L~~L 377 (788)
T PRK15387 344 LQELSVSD-NQLASLPTLPSELYKLWAYNN-RLTSL 377 (788)
T ss_pred cceEecCC-CccCCCCCCCcccceehhhcc-ccccC
Confidence 88888854 456566666667777777765 45543
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=2.4e-10 Score=102.53 Aligned_cols=175 Identities=16% Similarity=0.234 Sum_probs=111.1
Q ss_pred CccEEEeeccccCC--C--CCccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCccCcC----CCCCc
Q 018344 37 SIYVLDFEFCKLEP--P--RSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSLQLL----GLNKL 107 (357)
Q Consensus 37 ~L~~L~Ls~~~~~~--p--~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~----~~~~L 107 (357)
-|+.|.+.||.-.. + ....++|++++|.+.++.. ++..+..+...|+.|++|++..|..++...+- +|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 47788888876443 1 1335778888888888764 77777777778888888888888776654332 56788
Q ss_pred cEEEecccCCCcce-----eEeecceeeEEEEeecC-CCc---eeeccccccccceeeccc-ccCHHHHHHHhccCCccc
Q 018344 108 KEIKLDSNRCGLER-----VYINGVNVHSVDIKVYL-EPC---EVNVSSCKNLTHLRLDGL-SITDKWLYNQISELPFLE 177 (357)
Q Consensus 108 ~~L~l~~c~~~l~~-----~~~~~p~L~~L~l~~~~-~~~---~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~ 177 (357)
+++++++|. .... ..-.+..++.+...|.. .+. ...-..+..+.++++..+ .++|..+..+-.++..|+
T Consensus 219 ~~lNlSwc~-qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCP-QISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCc-hhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 888888886 3322 22223344445444421 110 011123445666666544 467777777777788888
Q ss_pred eeecccccccccccc-----ccccccEEEccccccccccc
Q 018344 178 YLALHYCMKLRSINI-----SSPRLKELVFERCEELVEFE 212 (357)
Q Consensus 178 ~L~l~~~~~l~~l~~-----~~~~L~~L~l~~c~~L~~~~ 212 (357)
.|+.++|..+.+... ...+|+.+.++.|.++++..
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 888888877644332 26788888888887777654
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.85 E-value=2e-11 Score=114.56 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=54.4
Q ss_pred EEEEEecCCcceecCcccc-cCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeec
Q 018344 15 ELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN 92 (357)
Q Consensus 15 ~l~l~~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~ 92 (357)
-+.|.++++..-.+|.+++ ++..|-.|+||+|.+.. |+.+..+.+|++|.|++|.+.--.+..+ ..+..|+.|++++
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSN 206 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhccc
Confidence 4567888888888998776 47788888999988877 6678888888888888886533323321 2344455555555
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=7.1e-10 Score=95.51 Aligned_cols=202 Identities=15% Similarity=0.177 Sum_probs=124.4
Q ss_pred CCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccEEEecccCCCcceeEeecceeeEEEEe
Q 018344 58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIK 135 (357)
Q Consensus 58 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~ 135 (357)
+.|++|+|++..++...+..+++.|..|+.|.+.+...-..+ .+..-.+|+.|++++|. ++.+...
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~t~n~~----------- 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GFTENAL----------- 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-ccchhHH-----------
Confidence 458899999888888888888889999988888886421111 11122578888888777 4333211
Q ss_pred ecCCCceeeccccccccceeecccccCHHHHHHHhcc-CCccceeeccccccc------cccccccccccEEEccccccc
Q 018344 136 VYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISE-LPFLEYLALHYCMKL------RSINISSPRLKELVFERCEEL 208 (357)
Q Consensus 136 ~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~-~~~L~~L~l~~~~~l------~~l~~~~~~L~~L~l~~c~~L 208 (357)
..-+.+|+.|..|+++++..+.+.+.-++.+ -++|..|++++|..- ..+...++++.+|++++|..+
T Consensus 253 ------~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 253 ------QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred ------HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 1245677777888888777655555544444 356777777766532 112222666666666666333
Q ss_pred ccccccCCCcceEEeeeeeeeEecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccc
Q 018344 209 VEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELRE 288 (357)
Q Consensus 209 ~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~ 288 (357)
+. .....+-.|+.+++|++.-|+. ++|+.+-+
T Consensus 327 ~~---------------------------------------------~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~ 358 (419)
T KOG2120|consen 327 KN---------------------------------------------DCFQEFFKFNYLQHLSLSRCYD---IIPETLLE 358 (419)
T ss_pred Cc---------------------------------------------hHHHHHHhcchheeeehhhhcC---CChHHeee
Confidence 22 1122344577788888877753 33443333
Q ss_pred cCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEeecCC
Q 018344 289 ILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPN 336 (357)
Q Consensus 289 ~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~~~~ 336 (357)
.. ..|.|.+|++.++. ....+..+.+.|||| .|+|..
T Consensus 359 l~--s~psl~yLdv~g~v------sdt~mel~~e~~~~l---kin~q~ 395 (419)
T KOG2120|consen 359 LN--SKPSLVYLDVFGCV------SDTTMELLKEMLSHL---KINCQH 395 (419)
T ss_pred ec--cCcceEEEEecccc------CchHHHHHHHhCccc---ccccee
Confidence 32 24789999999773 123567788999997 454443
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.3e-10 Score=98.48 Aligned_cols=197 Identities=18% Similarity=0.245 Sum_probs=123.8
Q ss_pred HHHHhCCCeEEEEEecCCcceecCccccc-CCCccEEEeeccccCC---CCCccCCCCCceEEeeccccCHHHHHHHHcC
Q 018344 6 SYAFASNVKELKLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAG 81 (357)
Q Consensus 6 ~~~~~~~v~~l~l~~~~~~~~~lP~~i~~-~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 81 (357)
...+.+||..+.+--.....-.+.+...- -+.|++||||...+.. -.....|.+|+.|.|.++.+++.... -+..
T Consensus 154 ~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAk 232 (419)
T KOG2120|consen 154 GRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAK 232 (419)
T ss_pred HHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhc
Confidence 44567888888764322111111111111 1359999999865443 12456789999999999988765444 4556
Q ss_pred CCCccEEeeecCCCCCccCc----CCCCCccEEEecccCCCccee-----EeecceeeEEEEeecCCCc-----eeeccc
Q 018344 82 CPLIEYININNCPGLKSLQL----LGLNKLKEIKLDSNRCGLERV-----YINGVNVHSVDIKVYLEPC-----EVNVSS 147 (357)
Q Consensus 82 ~~~L~~L~L~~c~~l~~l~l----~~~~~L~~L~l~~c~~~l~~~-----~~~~p~L~~L~l~~~~~~~-----~~~~~~ 147 (357)
-.+|+.|++++|.+++...+ .+|..|.+|++++|. ...+. .-..++|..|+++|....+ ..-...
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~-l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF-LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh-ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 78899999999998776443 467889999999997 33322 1125677777777732211 122356
Q ss_pred cccccceeeccc-ccCHHHHHHHhccCCccceeeccccccccc---ccc-ccccccEEEcccc
Q 018344 148 CKNLTHLRLDGL-SITDKWLYNQISELPFLEYLALHYCMKLRS---INI-SSPRLKELVFERC 205 (357)
Q Consensus 148 ~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~---l~~-~~~~L~~L~l~~c 205 (357)
|++|.+|+|+++ .++++.+. .+-.++.|++|.++.|..+.. +.. ..|+|.+|++.+|
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 788888888754 45554433 445688888888888776521 111 2567777777776
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.74 E-value=3.8e-08 Score=98.16 Aligned_cols=168 Identities=15% Similarity=0.084 Sum_probs=91.4
Q ss_pred CCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
.++.|. +..+....+|.. .++|++|++++|.+.. |. ..++|++|++++|.++ .++.+ .++|+.|++
T Consensus 223 ~L~~L~--L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~--~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 223 HITTLV--IPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT--HLPAL---PSGLCKLWI 289 (788)
T ss_pred CCCEEE--ccCCcCCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCchh--hhhhc---hhhcCEEEC
Confidence 445554 556777788863 5789999999998776 43 3478899999988653 23332 245777888
Q ss_pred ecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeecccc-ccccceeecccccCHHHHHHH
Q 018344 91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSC-KNLTHLRLDGLSITDKWLYNQ 169 (357)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~-~~L~~L~L~~~~i~~~~~~~l 169 (357)
++|. ++.++. ..++|+.|++++|.. ..+....++|+.|.+.++.+. .++.+ .+|+.|++++|.++. ++.
T Consensus 290 s~N~-Lt~LP~-~p~~L~~LdLS~N~L--~~Lp~lp~~L~~L~Ls~N~L~---~LP~lp~~Lq~LdLS~N~Ls~--LP~- 359 (788)
T PRK15387 290 FGNQ-LTSLPV-LPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLT---SLPTLPSGLQELSVSDNQLAS--LPT- 359 (788)
T ss_pred cCCc-cccccc-cccccceeECCCCcc--ccCCCCcccccccccccCccc---cccccccccceEecCCCccCC--CCC-
Confidence 7764 444432 226777888877752 111111234555555553322 11111 246666666665532 221
Q ss_pred hccCCccceeeccccccccccccccccccEEEcccc
Q 018344 170 ISELPFLEYLALHYCMKLRSINISSPRLKELVFERC 205 (357)
Q Consensus 170 ~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 205 (357)
..++|+.|++++ +.+..+|....+|+.|+++++
T Consensus 360 --lp~~L~~L~Ls~-N~L~~LP~l~~~L~~LdLs~N 392 (788)
T PRK15387 360 --LPSELYKLWAYN-NRLTSLPALPSGLKELIVSGN 392 (788)
T ss_pred --CCcccceehhhc-cccccCcccccccceEEecCC
Confidence 123444455432 233334433344555555544
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=5.9e-09 Score=95.02 Aligned_cols=197 Identities=18% Similarity=0.132 Sum_probs=125.5
Q ss_pred CCCeEEEEEecCC---cceecCcccccCCCccEEEeeccccCC-C-------CCccCCCCCceEEeeccccCH---HHHH
Q 018344 11 SNVKELKLDVGCC---RIYNLPQIVFYLKSIYVLDFEFCKLEP-P-------RSTVTLFSLRKLCLSFVHVDD---EVIR 76 (357)
Q Consensus 11 ~~v~~l~l~~~~~---~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-------~~~~~l~~L~~L~L~~~~~~~---~~l~ 76 (357)
..++++.+.-..- ....++..+...+++++|+++++.... + ..+..+++|+.|++++|.+.. ..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3567776643321 224566666677889999998876552 1 234568899999999988743 2233
Q ss_pred HHHcCCCCccEEeeecCCCCC----cc--CcCCC-CCccEEEecccCCCc---cee---EeecceeeEEEEeecCCCc--
Q 018344 77 DMVAGCPLIEYININNCPGLK----SL--QLLGL-NKLKEIKLDSNRCGL---ERV---YINGVNVHSVDIKVYLEPC-- 141 (357)
Q Consensus 77 ~l~~~~~~L~~L~L~~c~~l~----~l--~l~~~-~~L~~L~l~~c~~~l---~~~---~~~~p~L~~L~l~~~~~~~-- 141 (357)
.+... ++|++|++++|..-. .+ .+..+ ++|++|++++|.... ..+ ....++|++|++++..+..
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 33344 669999999886321 11 12234 789999999887321 111 1134578899888754321
Q ss_pred ----eeeccccccccceeecccccCHHH---HHHHhccCCccceeecccccccc----cccc----ccccccEEEccccc
Q 018344 142 ----EVNVSSCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCMKLR----SINI----SSPRLKELVFERCE 206 (357)
Q Consensus 142 ----~~~~~~~~~L~~L~L~~~~i~~~~---~~~l~~~~~~L~~L~l~~~~~l~----~l~~----~~~~L~~L~l~~c~ 206 (357)
...+..+++|++|+++++.+++.. +...+..+++|+.|++++|.--. .+.. ..++|++|++++|
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n- 260 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN- 260 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-
Confidence 112344568999999999887643 44566788999999998764221 1111 1368999999998
Q ss_pred ccc
Q 018344 207 ELV 209 (357)
Q Consensus 207 ~L~ 209 (357)
.++
T Consensus 261 ~i~ 263 (319)
T cd00116 261 DIT 263 (319)
T ss_pred CCC
Confidence 554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.72 E-value=3.1e-08 Score=99.06 Aligned_cols=175 Identities=16% Similarity=0.139 Sum_probs=109.7
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
.+++.......+|..+. ++|+.|+|++|.+.. |..+ +++|++|++++|.++ .++..+ .++|+.|+|++|.
T Consensus 182 ~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L~Ls~N~- 252 (754)
T PRK15370 182 ELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLT--SIPATL--PDTIQEMELSINR- 252 (754)
T ss_pred EEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccc--cCChhh--hccccEEECcCCc-
Confidence 34556666778887664 579999999998776 5433 368999999999764 233222 2479999999986
Q ss_pred CCccCcCCCCCccEEEecccCCCcceeEe-ecceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccC
Q 018344 96 LKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISEL 173 (357)
Q Consensus 96 l~~l~l~~~~~L~~L~l~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 173 (357)
+..++..-..+|+.|++++|.. ..+.. ..++|++|+++++.+.. ...+ .++|+.|++++|.++. ++.. -.
T Consensus 253 L~~LP~~l~s~L~~L~Ls~N~L--~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~--LP~~--l~ 324 (754)
T PRK15370 253 ITELPERLPSALQSLDLFHNKI--SCLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA--LPET--LP 324 (754)
T ss_pred cCcCChhHhCCCCEEECcCCcc--CccccccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc--CCcc--cc
Confidence 4444332225799999987762 22211 13478888887754321 0111 1357888888887742 2221 13
Q ss_pred Cccceeeccccccccccccc-cccccEEEccccccccc
Q 018344 174 PFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVE 210 (357)
Q Consensus 174 ~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~ 210 (357)
++|+.|++++|. +..+|.. +++|+.|++++| +++.
T Consensus 325 ~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N-~L~~ 360 (754)
T PRK15370 325 PGLKTLEAGENA-LTSLPASLPPELQVLDVSKN-QITV 360 (754)
T ss_pred ccceeccccCCc-cccCChhhcCcccEEECCCC-CCCc
Confidence 678888886553 4445432 467888888877 4543
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4e-09 Score=95.33 Aligned_cols=171 Identities=19% Similarity=0.146 Sum_probs=122.7
Q ss_pred cCCCccEEEeeccccCCCC---CccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCC---ccCcCCCCC
Q 018344 34 YLKSIYVLDFEFCKLEPPR---STVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLK---SLQLLGLNK 106 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~p~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~---~l~l~~~~~ 106 (357)
++++|+...|.++....+. -...|++++.|+|+.|-+ ....+..++..+|+||.|+++.|...- ......+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4678899899888765532 456899999999999988 778889999999999999999876321 111113478
Q ss_pred ccEEEecccCCCc---ceeEeecceeeEEEEeecC-CC-ceeeccccccccceeecccccCHHHHHHHhccCCccceeec
Q 018344 107 LKEIKLDSNRCGL---ERVYINGVNVHSVDIKVYL-EP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLAL 181 (357)
Q Consensus 107 L~~L~l~~c~~~l---~~~~~~~p~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l 181 (357)
|+.|.+++|.+.. ..+...+|+|+.|.+.++. +- .......+..|+.|+|++|.+-+.......+.+|.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999998422 2234468999999998753 21 12233445669999999988755444456788999999999
Q ss_pred cccccccccc----------cccccccEEEcccc
Q 018344 182 HYCMKLRSIN----------ISSPRLKELVFERC 205 (357)
Q Consensus 182 ~~~~~l~~l~----------~~~~~L~~L~l~~c 205 (357)
+.|. +.++. ...++|+.|++...
T Consensus 279 s~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 279 SSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred cccC-cchhcCCCccchhhhcccccceeeecccC
Confidence 7553 22221 12678899988776
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.66 E-value=9.9e-10 Score=87.35 Aligned_cols=154 Identities=23% Similarity=0.212 Sum_probs=95.1
Q ss_pred ecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCc-cCcCCC
Q 018344 27 NLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS-LQLLGL 104 (357)
Q Consensus 27 ~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~-l~l~~~ 104 (357)
++| .++.+++++.|.||++.+.. |+.+..+.+|++|++++|.+ +.++.-++++|.|+.|+++.+..... -.+.++
T Consensus 25 ~~~-gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELP-GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hcc-cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 444 56788889999999988766 66888999999999999954 45677788888899988886652111 123445
Q ss_pred CCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccc
Q 018344 105 NKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC 184 (357)
Q Consensus 105 ~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 184 (357)
|.|+.|+++.+.. +....| -.|-.+.-|+.|++++|.+ +.++.-++++.+|+.|.+..+
T Consensus 102 p~levldltynnl-----------------~e~~lp--gnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 102 PALEVLDLTYNNL-----------------NENSLP--GNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred chhhhhhcccccc-----------------ccccCC--cchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccC
Confidence 7777777776641 001222 2333444466666666665 555555666666666666433
Q ss_pred ccccccccc---cccccEEEcccc
Q 018344 185 MKLRSINIS---SPRLKELVFERC 205 (357)
Q Consensus 185 ~~l~~l~~~---~~~L~~L~l~~c 205 (357)
. +-++|.. ..+|++|.+.+.
T Consensus 161 d-ll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 161 D-LLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred c-hhhCcHHHHHHHHHHHHhcccc
Confidence 2 2222222 344555555554
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.63 E-value=1.4e-09 Score=106.32 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=15.9
Q ss_pred EecCCcceecCcccccCCCccEEEeecccc
Q 018344 19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKL 48 (357)
Q Consensus 19 ~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~ 48 (357)
|++.+....+|.++..|.+|+.++...+.+
T Consensus 247 dis~n~l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 247 DISHNNLSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred ecchhhhhcchHHHHhcccceEecccchhH
Confidence 334444555565555566666655554433
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.63 E-value=2.7e-08 Score=81.62 Aligned_cols=126 Identities=22% Similarity=0.276 Sum_probs=41.8
Q ss_pred cCCCccEEEeeccccCCCCCcc-CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--c-CCCCCccE
Q 018344 34 YLKSIYVLDFEFCKLEPPRSTV-TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--L-LGLNKLKE 109 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l-~~~~~L~~ 109 (357)
++.++++|+|.++.+..-...+ .+.+|++|+|++|.++. +.. +..++.|++|++++|. ++.+. + ..+|+|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 4446677777777665422333 46677777777776521 121 2345667777777654 33332 1 13466666
Q ss_pred EEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH--HHHHHHhccCCccceeecc
Q 018344 110 IKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLALH 182 (357)
Q Consensus 110 L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~l~ 182 (357)
|.+++|.. . ++ ..+ ..+..+++|+.|++.+|.+++ .--...+..+|+|+.||-.
T Consensus 93 L~L~~N~I--~-------~l-------~~l---~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKI--S-------DL-------NEL---EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS------------SC-------CCC---GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcC--C-------Ch-------HHh---HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 66666551 0 00 000 234567888899999888865 2234567889999999854
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.61 E-value=1.2e-09 Score=86.89 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=102.8
Q ss_pred EecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCC
Q 018344 19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK 97 (357)
Q Consensus 19 ~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~ 97 (357)
.++.++...+|+.+..+.+|++|+++++.+.. |..+..+++|+.|++..|.+ ..++.=++.+|.||.|++.+++.-.
T Consensus 39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhcccccccc
Confidence 45678889999999999999999999998877 77899999999999998854 3345557889999999999976322
Q ss_pred c-c--CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCC
Q 018344 98 S-L--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELP 174 (357)
Q Consensus 98 ~-l--~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 174 (357)
. + .+..+..|+-|.++++.+ ..+| .+++.+++|+.|.+..|++ -.++.-++.+.
T Consensus 117 ~~lpgnff~m~tlralyl~dndf-------------------e~lp--~dvg~lt~lqil~lrdndl--l~lpkeig~lt 173 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDF-------------------EILP--PDVGKLTNLQILSLRDNDL--LSLPKEIGDLT 173 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCc-------------------ccCC--hhhhhhcceeEEeeccCch--hhCcHHHHHHH
Confidence 1 1 111224555555555541 1123 4667778888888887776 44566677788
Q ss_pred ccceeecccc
Q 018344 175 FLEYLALHYC 184 (357)
Q Consensus 175 ~L~~L~l~~~ 184 (357)
.|++|++.++
T Consensus 174 ~lrelhiqgn 183 (264)
T KOG0617|consen 174 RLRELHIQGN 183 (264)
T ss_pred HHHHHhcccc
Confidence 8888888654
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=9.4e-08 Score=95.67 Aligned_cols=175 Identities=13% Similarity=0.155 Sum_probs=114.2
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL 96 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l 96 (357)
|+++++....+|..++ .+|+.|++++|.+.. |..+ .++|+.|+|++|.+. .++..+ ..+|+.|++++|. +
T Consensus 204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~--~LP~~l--~s~L~~L~Ls~N~-L 274 (754)
T PRK15370 204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRIT--ELPERL--PSALQSLDLFHNK-I 274 (754)
T ss_pred EEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccC--cCChhH--hCCCCEEECcCCc-c
Confidence 4556777888998765 589999999998776 4332 358999999999774 223222 2479999998764 5
Q ss_pred CccCcCCCCCccEEEecccCCCcceeEee-cceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccCC
Q 018344 97 KSLQLLGLNKLKEIKLDSNRCGLERVYIN-GVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELP 174 (357)
Q Consensus 97 ~~l~l~~~~~L~~L~l~~c~~~l~~~~~~-~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 174 (357)
+.++-.-.++|+.|++++|.+ ..+... .++|+.|+++++.+.. ... -.++|+.|++++|.++. ++..+ .+
T Consensus 275 ~~LP~~l~~sL~~L~Ls~N~L--t~LP~~lp~sL~~L~Ls~N~Lt~LP~~--l~~sL~~L~Ls~N~Lt~--LP~~l--~~ 346 (754)
T PRK15370 275 SCLPENLPEELRYLSVYDNSI--RTLPAHLPSGITHLNVQSNSLTALPET--LPPGLKTLEAGENALTS--LPASL--PP 346 (754)
T ss_pred CccccccCCCCcEEECCCCcc--ccCcccchhhHHHHHhcCCccccCCcc--ccccceeccccCCcccc--CChhh--cC
Confidence 554432235899999998863 222111 2367777777654321 011 22578888888887743 33222 36
Q ss_pred ccceeeccccccccccccc-cccccEEEcccccccccc
Q 018344 175 FLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEF 211 (357)
Q Consensus 175 ~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~~ 211 (357)
+|+.|++++| .+..+|.. +++|+.|++++| +++.+
T Consensus 347 sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N-~Lt~L 382 (754)
T PRK15370 347 ELQVLDVSKN-QITVLPETLPPTITTLDVSRN-ALTNL 382 (754)
T ss_pred cccEEECCCC-CCCcCChhhcCCcCEEECCCC-cCCCC
Confidence 8999999765 34445532 567889999888 56654
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.58 E-value=7.9e-09 Score=101.30 Aligned_cols=185 Identities=19% Similarity=0.243 Sum_probs=111.9
Q ss_pred HhCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 9 FASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 9 ~~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
++++|+-..+|++.+....+|..+..+..|+.|+++++.+.. |....+..+|++++|.+|.. ..++.-+..+.+|++
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQY 118 (1081)
T ss_pred hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh--hcCchhHHhhhcccc
Confidence 455777667788887777888877777788888888876655 55667778888888888743 334555667778888
Q ss_pred EeeecCCCCC-ccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCC--ceeeccccccccc-eeecccccCH
Q 018344 88 ININNCPGLK-SLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEP--CEVNVSSCKNLTH-LRLDGLSITD 163 (357)
Q Consensus 88 L~L~~c~~l~-~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~L~~-L~L~~~~i~~ 163 (357)
|+++++.... .+.+..+..+..+..++|. ....+... .++.+++...... +..+... +++ ++|.+|.+.
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~-~~~~lg~~--~ik~~~l~~n~l~~~~~~~i~~---l~~~ldLr~N~~~- 191 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEEELAASNNE-KIQRLGQT--SIKKLDLRLNVLGGSFLIDIYN---LTHQLDLRYNEME- 191 (1081)
T ss_pred cccchhccCCCchhHHhhhHHHHHhhhcch-hhhhhccc--cchhhhhhhhhcccchhcchhh---hheeeecccchhh-
Confidence 8888765322 1222223333344444442 11111110 1333333322111 1122333 444 888888773
Q ss_pred HHHHHHhccCCccceeeccccccccccccccccccEEEccccc
Q 018344 164 KWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCE 206 (357)
Q Consensus 164 ~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~ 206 (357)
...+.++++|+.+.. .++.+..+....++++.|..++|+
T Consensus 192 ---~~dls~~~~l~~l~c-~rn~ls~l~~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 192 ---VLDLSNLANLEVLHC-ERNQLSELEISGPSLTALYADHNP 230 (1081)
T ss_pred ---hhhhhhccchhhhhh-hhcccceEEecCcchheeeeccCc
Confidence 223567888888877 456666777778888999888884
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.2e-08 Score=90.57 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=64.4
Q ss_pred cccCCCccEEEeeccccCCCC---CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--cCCCCC
Q 018344 32 VFYLKSIYVLDFEFCKLEPPR---STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNK 106 (357)
Q Consensus 32 i~~~~~L~~L~Ls~~~~~~p~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l~~~~~ 106 (357)
...+++|+.|+|+.|.+..|. .-..++.|++|.|+.|.++...+.++...+|+|+.|.+.+|..+..-. .--+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 345788999999998776532 334689999999999999988899999999999999999885322211 112357
Q ss_pred ccEEEecccC
Q 018344 107 LKEIKLDSNR 116 (357)
Q Consensus 107 L~~L~l~~c~ 116 (357)
|++|+++++.
T Consensus 248 L~~LdLs~N~ 257 (505)
T KOG3207|consen 248 LQELDLSNNN 257 (505)
T ss_pred HhhccccCCc
Confidence 8889998887
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.46 E-value=2.2e-08 Score=90.13 Aligned_cols=136 Identities=23% Similarity=0.356 Sum_probs=83.3
Q ss_pred CCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCccCcC----CCCCccEEEecccCCCcceeEeecceeeEE
Q 018344 58 FSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSLQLL----GLNKLKEIKLDSNRCGLERVYINGVNVHSV 132 (357)
Q Consensus 58 ~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~----~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L 132 (357)
.-||.|.++++.- .+..+.....+||++|+|++.+|..++.-... .|++|+++++..|. .++.....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-~iT~~~Lk------- 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-SITDVSLK------- 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-hhHHHHHH-------
Confidence 5789999999864 77888999999999999999999977654332 35889999888877 33322110
Q ss_pred EEeecCCCceeeccccccccceeeccc-ccCHHHHHHHhccCCccceeeccccccccc--c---ccccccccEEEccccc
Q 018344 133 DIKVYLEPCEVNVSSCKNLTHLRLDGL-SITDKWLYNQISELPFLEYLALHYCMKLRS--I---NISSPRLKELVFERCE 206 (357)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~--l---~~~~~~L~~L~l~~c~ 206 (357)
-...+|++|++++++++ .+++..+.....++..++.+...+|...+. + .....-+.++++..|.
T Consensus 210 ----------~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 210 ----------YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred ----------HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhc
Confidence 01235566666666554 244444555555565566665555544311 1 1113344555555665
Q ss_pred ccccc
Q 018344 207 ELVEF 211 (357)
Q Consensus 207 ~L~~~ 211 (357)
.+++.
T Consensus 280 ~lTD~ 284 (483)
T KOG4341|consen 280 QLTDE 284 (483)
T ss_pred cccch
Confidence 55543
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.43 E-value=2.7e-09 Score=95.48 Aligned_cols=182 Identities=22% Similarity=0.211 Sum_probs=111.9
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
.++..++...++|+.++.+..++.|+.+.+.... |..++.+++|+.++.+.+.+. .++.-++.|..|+.|+-.++..
T Consensus 72 vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~N~i 149 (565)
T KOG0472|consen 72 VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATNNQI 149 (565)
T ss_pred EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee--ecCchHHHHhhhhhhhcccccc
Confidence 4566677788888888888888888888887666 667788888888888877542 1223344455556555554432
Q ss_pred ----------------------CCccCc--CCCCCccEEEecccCCCcceeEe---ecceeeEEEEeecCCCceeecccc
Q 018344 96 ----------------------LKSLQL--LGLNKLKEIKLDSNRCGLERVYI---NGVNVHSVDIKVYLEPCEVNVSSC 148 (357)
Q Consensus 96 ----------------------l~~l~l--~~~~~L~~L~l~~c~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~ 148 (357)
++.+.- -.+..|++|+...+- ++.+.- ...+|+.|.+..+.+.+-++|++|
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~--L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gc 227 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL--LETLPPELGGLESLELLYLRRNKIRFLPEFPGC 227 (565)
T ss_pred ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh--hhcCChhhcchhhhHHHHhhhcccccCCCCCcc
Confidence 111100 012345555544332 111111 122344444544544444588899
Q ss_pred ccccceeecccccCHHHHHH-HhccCCccceeeccccccccccccc---cccccEEEcccc
Q 018344 149 KNLTHLRLDGLSITDKWLYN-QISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERC 205 (357)
Q Consensus 149 ~~L~~L~L~~~~i~~~~~~~-l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c 205 (357)
..|+++++..|.+ +.++. ..++++++..||+ ..++++.+|.. ..+|.+|++++.
T Consensus 228 s~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDL-RdNklke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 228 SLLKELHVGENQI--EMLPAEHLKHLNSLLVLDL-RDNKLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred HHHHHHHhcccHH--HhhHHHHhcccccceeeec-cccccccCchHHHHhhhhhhhcccCC
Confidence 9999999998888 66664 4458899999998 45566666654 456677777765
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.42 E-value=3.3e-08 Score=88.46 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=93.8
Q ss_pred CCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
+|.-..+|.+.....++|..+- .+-+.++|..|.+.. |..|..+++||+|+|++|.++.-. +..+.+++.|.+|.
T Consensus 45 ~~~g~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lv 121 (498)
T KOG4237|consen 45 DVEGGIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLV 121 (498)
T ss_pred CCCCceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHH
Confidence 3445667777777777776542 356777887776554 568899999999999999774322 44566778888888
Q ss_pred eecCCCCCccCc---CCCCCccEEEecccC--CCcceeEeecceeeEEEEeecCCC--ceeeccccccccceeecccc
Q 018344 90 INNCPGLKSLQL---LGLNKLKEIKLDSNR--CGLERVYINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLS 160 (357)
Q Consensus 90 L~~c~~l~~l~l---~~~~~L~~L~l~~c~--~~l~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~~~~ 160 (357)
+-+++.++++.- .++.+|+.|.+.-|+ +..++..-..|++.-|.+..+... ....+..+.+++++++.-+.
T Consensus 122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 877666776643 344556666665444 123333344666666666553322 13456667778888886554
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.14 E-value=1e-06 Score=77.90 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=19.0
Q ss_pred CCCCCceEEeeccccCH---HHHHHHHcCCCCccEEeeecCC
Q 018344 56 TLFSLRKLCLSFVHVDD---EVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 56 ~l~~L~~L~L~~~~~~~---~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.+|.|++|+||.|.+.. ..+..++++|..|++|.|.+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 34455555555555422 2333444455555555555553
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.12 E-value=4.5e-07 Score=78.67 Aligned_cols=128 Identities=20% Similarity=0.117 Sum_probs=87.8
Q ss_pred CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEE
Q 018344 56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDI 134 (357)
Q Consensus 56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l 134 (357)
.+..|++++|++|.+ ..+..-+.-.|.++.|++++|.....-++..+++|+.|++++|.. ........+-++++|.+
T Consensus 282 TWq~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccch--hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 467899999999965 234444556799999999998765555555678999999998862 12222334557888888
Q ss_pred eecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344 135 KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM 185 (357)
Q Consensus 135 ~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 185 (357)
.++.+..-..+..+-+|..|++.+|+|..-.-...++++|.||.+.+.+++
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 775443112455566788889999888442223457889999998886554
No 30
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.10 E-value=1.8e-08 Score=90.34 Aligned_cols=39 Identities=8% Similarity=0.028 Sum_probs=24.9
Q ss_pred CCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEeecCCccee
Q 018344 293 PLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFY 340 (357)
Q Consensus 293 ~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~~~~~~~~ 340 (357)
.+.+|+.|++..+. .+.++-.+.+|.+|.+|.+ .+++|+
T Consensus 503 nm~nL~tLDL~nNd-------lq~IPp~LgnmtnL~hLeL--~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNND-------LQQIPPILGNMTNLRHLEL--DGNPFR 541 (565)
T ss_pred hhhhcceeccCCCc-------hhhCChhhccccceeEEEe--cCCccC
Confidence 35666777775431 3345666778888888888 445577
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.07 E-value=4.4e-06 Score=68.62 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=37.6
Q ss_pred EEEEEecCCcceecCcccc-cCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 15 ELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 15 ~l~l~~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
.-.|++.++....+. .+. .+.+|+.|+|++|.+..-..+..++.|++|++++|.++.-. +.+...+|+|++|++++|
T Consensus 21 ~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 21 LRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCC
Confidence 334455565555554 454 47899999999999877447888999999999999884210 223356899999999987
Q ss_pred CC--CCcc-CcCCCCCccEEEecccC
Q 018344 94 PG--LKSL-QLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 94 ~~--l~~l-~l~~~~~L~~L~l~~c~ 116 (357)
.. +..+ .+..+++|+.|++.+|.
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCChHHhHHHHcCCCcceeeccCCc
Confidence 63 2222 34456889999998886
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=1.4e-06 Score=77.07 Aligned_cols=186 Identities=19% Similarity=0.196 Sum_probs=98.4
Q ss_pred hHHHHHHhCCCeEEEEEecCC----cceecCc-------ccccCCCccEEEeeccccCC--CC----CccCCCCCceEEe
Q 018344 3 RCLSYAFASNVKELKLDVGCC----RIYNLPQ-------IVFYLKSIYVLDFEFCKLEP--PR----STVTLFSLRKLCL 65 (357)
Q Consensus 3 ~~i~~~~~~~v~~l~l~~~~~----~~~~lP~-------~i~~~~~L~~L~Ls~~~~~~--p~----~~~~l~~L~~L~L 65 (357)
+|+.-+.++.-+--.+++++. ...++|+ .+..|..|++|+||+|-+.+ +. .+.++..|++|.|
T Consensus 48 ~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 48 RAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred HHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence 577777665443334556642 2234444 34567799999999998765 32 2457899999999
Q ss_pred eccccCHHHHHHH------------HcCCCCccEEeeecCCCCCcc-------CcCCCCCccEEEecccCCCcceeEeec
Q 018344 66 SFVHVDDEVIRDM------------VAGCPLIEYININNCPGLKSL-------QLLGLNKLKEIKLDSNRCGLERVYING 126 (357)
Q Consensus 66 ~~~~~~~~~l~~l------------~~~~~~L~~L~L~~c~~l~~l-------~l~~~~~L~~L~l~~c~~~l~~~~~~~ 126 (357)
.+|.+....-..+ +..-+.|+++...+|.. ... .+..++.|+.+.+..+......+..
T Consensus 128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a-- 204 (382)
T KOG1909|consen 128 NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA-- 204 (382)
T ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHhccccceEEEecccccCchhHH--
Confidence 9998854433322 22345566665555431 110 0112245555555555411111100
Q ss_pred ceeeEEEEeecCCCceeeccccccccceeecccccCH---HHHHHHhccCCccceeeccccccc--------cccccccc
Q 018344 127 VNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD---KWLYNQISELPFLEYLALHYCMKL--------RSINISSP 195 (357)
Q Consensus 127 p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~---~~~~~l~~~~~~L~~L~l~~~~~l--------~~l~~~~~ 195 (357)
....+..|++|+.|+|..|.++. ..+...++.+|+|+.|.+++|..- ..+.-..+
T Consensus 205 --------------l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 205 --------------LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred --------------HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 01234456666666666665543 233445556666666666655422 11111245
Q ss_pred cccEEEcccc
Q 018344 196 RLKELVFERC 205 (357)
Q Consensus 196 ~L~~L~l~~c 205 (357)
+|+.+.+.+|
T Consensus 271 ~L~vl~l~gN 280 (382)
T KOG1909|consen 271 SLEVLELAGN 280 (382)
T ss_pred CCceeccCcc
Confidence 5666666655
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=2.7e-06 Score=84.63 Aligned_cols=147 Identities=19% Similarity=0.227 Sum_probs=99.2
Q ss_pred CCccEEEeeccccCC---CCCc-cCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEE
Q 018344 36 KSIYVLDFEFCKLEP---PRST-VTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEI 110 (357)
Q Consensus 36 ~~L~~L~Ls~~~~~~---p~~~-~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L 110 (357)
.+|++|+++|..... |..+ .-||+|++|.+++..+..+.+..+..++|+|+.||+++++ ++.+ .++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence 479999998854322 2222 3589999999999988556688888999999999999976 3333 44555677777
Q ss_pred EecccCCCc-cee--EeecceeeEEEEeecCC---C-----ceeeccccccccceeecccccCHHHHHHHhccCCcccee
Q 018344 111 KLDSNRCGL-ERV--YINGVNVHSVDIKVYLE---P-----CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL 179 (357)
Q Consensus 111 ~l~~c~~~l-~~~--~~~~p~L~~L~l~~~~~---~-----~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 179 (357)
.+.+=.+.. ..+ -..+.+|+.|+++.... + .-.....+|+|+.|+.+++.++++.+..++..-|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 665433111 111 22466788888876211 1 001122478899999999999888888888888888887
Q ss_pred eccc
Q 018344 180 ALHY 183 (357)
Q Consensus 180 ~l~~ 183 (357)
..-.
T Consensus 281 ~~~~ 284 (699)
T KOG3665|consen 281 AALD 284 (699)
T ss_pred hhhh
Confidence 7543
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.94 E-value=1.9e-06 Score=87.81 Aligned_cols=199 Identities=19% Similarity=0.243 Sum_probs=108.8
Q ss_pred CCCeEE-EEEecC-CcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKEL-KLDVGC-CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l-~l~~~~-~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
...+.| .||++. ....++|.+++++-+|++|+|++..... |.++.+|..|.+|++..+..-. .++.+...+++|++
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRV 646 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccE
Confidence 334444 356663 3556788888888888888888877665 7778888888888888764311 12444555788888
Q ss_pred EeeecCC-CCCcc---CcCCCCCccEEEecccCC-CcceeEeecceee----EEEEeecCCC-ceeeccccccccceeec
Q 018344 88 ININNCP-GLKSL---QLLGLNKLKEIKLDSNRC-GLERVYINGVNVH----SVDIKVYLEP-CEVNVSSCKNLTHLRLD 157 (357)
Q Consensus 88 L~L~~c~-~l~~l---~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~----~L~l~~~~~~-~~~~~~~~~~L~~L~L~ 157 (357)
|.+..-. ..... .+..+.+|+.++...+.. .+.+. ...+.|. .+...+.... .......+.+|+.|.+.
T Consensus 647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSIL 725 (889)
T ss_pred EEeeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEE
Confidence 8886543 11111 122334555555543331 00110 1111111 1111111111 12345567778888888
Q ss_pred ccccCHHHHH---H-Hhc-cCCccceeeccccccccccc--cccccccEEEcccccccccc
Q 018344 158 GLSITDKWLY---N-QIS-ELPFLEYLALHYCMKLRSIN--ISSPRLKELVFERCEELVEF 211 (357)
Q Consensus 158 ~~~i~~~~~~---~-l~~-~~~~L~~L~l~~~~~l~~l~--~~~~~L~~L~l~~c~~L~~~ 211 (357)
++.+.+..+. . ... .++++..+.+.+|.....+. ...++|+.|.+.+|+.++++
T Consensus 726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 7776542221 0 011 25566666666666665544 33788888888888766653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.89 E-value=2.7e-06 Score=73.89 Aligned_cols=119 Identities=21% Similarity=0.277 Sum_probs=68.1
Q ss_pred CCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCc--CCCCCccEEEe
Q 018344 36 KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQL--LGLNKLKEIKL 112 (357)
Q Consensus 36 ~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l--~~~~~L~~L~l 112 (357)
+.|+.++||+|.+.. .....-.|.++.|++++|.+. .+.. +..+++|+.|+|++|. +..+.- ..+.++++|.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~--~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR--TVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccccee--eehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 457777777766544 223344577777777777552 1222 4556777777777754 222110 12246666666
Q ss_pred cccCC----CcceeEeecceeeEEEEeecCCCc---eeeccccccccceeecccccC
Q 018344 113 DSNRC----GLERVYINGVNVHSVDIKVYLEPC---EVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 113 ~~c~~----~l~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~~L~~L~L~~~~i~ 162 (357)
++|.. ++.. +=+|+.|++.++.+.- -..++++|.|+++.|.+|.+.
T Consensus 360 a~N~iE~LSGL~K----LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETLSGLRK----LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhhhhhHh----hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66541 1111 1256666666643321 135678899999999998774
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.83 E-value=3.1e-05 Score=51.90 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=28.2
Q ss_pred ecCCcceecCcccc-cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc
Q 018344 20 VGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH 69 (357)
Q Consensus 20 ~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~ 69 (357)
++.+....+|...+ .+++|++|++++|.+.. |..+.++++|++|++++|.
T Consensus 8 l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 8 LSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455556665433 36666666666665544 3455666666666666653
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=8.3e-06 Score=70.85 Aligned_cols=178 Identities=15% Similarity=0.052 Sum_probs=112.7
Q ss_pred CCCeEEEEEecCC-cceecCcccccCCCccEEEeeccccCCCC--CccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKELKLDVGCC-RIYNLPQIVFYLKSIYVLDFEFCKLEPPR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l~l~~~~~-~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
.+|+++++..... ...++-..+.+++.|+.|+|+.|.+.++- ....+.+|++|.|.+..+......+....+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 3677777643321 12233344456788999999999887632 12456799999999998888888888899999999
Q ss_pred EeeecCCCCC----ccCcCCC-CCccEEEecccCC----CcceeEeecceeeEEEEeecCCC---ceeecccccccccee
Q 018344 88 ININNCPGLK----SLQLLGL-NKLKEIKLDSNRC----GLERVYINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLR 155 (357)
Q Consensus 88 L~L~~c~~l~----~l~l~~~-~~L~~L~l~~c~~----~l~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~L~~L~ 155 (357)
|+++.|..-+ .-..... +.+++|+...|.. ....+.-..|++.++-+..+.+. ....+..++.+--|.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 9998875311 1111111 4677777777752 11111223677776666553221 112333455566778
Q ss_pred ecccccCHHHHHHHhccCCccceeecccccccc
Q 018344 156 LDGLSITDKWLYNQISELPFLEYLALHYCMKLR 188 (357)
Q Consensus 156 L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 188 (357)
|+.+++.+-+-.+.+.++|.|..|.++..+...
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 888888654445667889999999987665543
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=9.8e-07 Score=84.95 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=91.7
Q ss_pred CcccccCCCccEEEeeccccCCCCCcc---------------------------------CCCCCceEEeeccccCHHHH
Q 018344 29 PQIVFYLKSIYVLDFEFCKLEPPRSTV---------------------------------TLFSLRKLCLSFVHVDDEVI 75 (357)
Q Consensus 29 P~~i~~~~~L~~L~Ls~~~~~~p~~~~---------------------------------~l~~L~~L~L~~~~~~~~~l 75 (357)
|-.|+.+++|++|.|.+|.+....++. .+-.|.+.+.++|.+ ..+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhH
Confidence 777888888888888887654421111 122334444444432 222
Q ss_pred HHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccce
Q 018344 76 RDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHL 154 (357)
Q Consensus 76 ~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L 154 (357)
...+.-+|.||.|+|++|..-+.-.+..|++|++||++.|+. .++.+....-.|+.|.+.++....-.++.++.+|+.|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhcc
Confidence 333445677888888887643333455668888898888763 3334433333577777777543322355677778888
Q ss_pred eecccccCHHHHHHHhccCCccceeeccccc
Q 018344 155 RLDGLSITDKWLYNQISELPFLEYLALHYCM 185 (357)
Q Consensus 155 ~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 185 (357)
++++|-+.+-.--..++.+..|..|.+.+++
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888776552222334555667777776543
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.77 E-value=1.7e-05 Score=74.72 Aligned_cols=146 Identities=23% Similarity=0.279 Sum_probs=66.1
Q ss_pred cccCCCccEEEeeccccCC-CCCccCCC-CCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcC--CCCCc
Q 018344 32 VFYLKSIYVLDFEFCKLEP-PRSTVTLF-SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLL--GLNKL 107 (357)
Q Consensus 32 i~~~~~L~~L~Ls~~~~~~-p~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~--~~~~L 107 (357)
+...+.++.|++.++.... +.....+. +|+.|+++.+.+. .++.-+..+++|+.|++++|. +..+.-. ..+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 3334456666666655444 33333442 6666666666432 222334556666666666654 2222211 33556
Q ss_pred cEEEecccCCCcceeEeecc-eeeEEEEeec-CCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecc
Q 018344 108 KEIKLDSNRCGLERVYINGV-NVHSVDIKVY-LEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALH 182 (357)
Q Consensus 108 ~~L~l~~c~~~l~~~~~~~p-~L~~L~l~~~-~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~ 182 (357)
+.|+++++........+..+ .|+++.+.+. .......+..+.++..+.+.++.+.+ +...++.+++++.|+++
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLS 263 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceeccc
Confidence 66666655411101111122 2555555443 11111233444445555555554421 13344555556666663
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.75 E-value=1.1e-05 Score=54.06 Aligned_cols=58 Identities=26% Similarity=0.305 Sum_probs=42.5
Q ss_pred CCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 36 KSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 36 ~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
++|++|++++|.+.. | ..+.++++|++|++++|.+..- -+..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 368899999987766 3 4778889999999998876321 12346678888888888764
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.75 E-value=1.1e-05 Score=72.58 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=44.2
Q ss_pred EEEecCCcceecCccccc-CCCccEEEeeccccCC--CCCccCCCCCceEEeec-cccC
Q 018344 17 KLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSF-VHVD 71 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~-~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~-~~~~ 71 (357)
.+++..+.+..+|+..|+ +++|++|+||.|.+.. |..|.++++|.+|.+.+ |.++
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 455567788999988775 9999999999987654 77899999999988877 6553
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.69 E-value=2e-05 Score=74.12 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=113.7
Q ss_pred EEecCCcceecCcccccCC-CccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLK-SIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~-~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
+++..+...++|......+ +|+.|+++++.+.. |.....+++|+.|++++|.+ ..++...+..++|+.|+++++.
T Consensus 121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--~~l~~~~~~~~~L~~L~ls~N~- 197 (394)
T COG4886 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLSNLNNLDLSGNK- 197 (394)
T ss_pred EecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--hhhhhhhhhhhhhhheeccCCc-
Confidence 4556677889999888885 99999999998876 56789999999999999965 3345555578999999999976
Q ss_pred CCccCcC--CCCCccEEEecccC-CCcceeEeecceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhc
Q 018344 96 LKSLQLL--GLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQIS 171 (357)
Q Consensus 96 l~~l~l~--~~~~L~~L~l~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 171 (357)
+..++.. ....|+++.++++. .......-..+++..+.+.+..... ....+.+++++.|++.++.+++ +.. +.
T Consensus 198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~--i~~-~~ 274 (394)
T COG4886 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS--ISS-LG 274 (394)
T ss_pred cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc--ccc-cc
Confidence 4444432 33458899998884 1111112224445545443322210 1355677889999999998854 222 77
Q ss_pred cCCccceeeccccccc
Q 018344 172 ELPFLEYLALHYCMKL 187 (357)
Q Consensus 172 ~~~~L~~L~l~~~~~l 187 (357)
...+++.|++++....
T Consensus 275 ~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 275 SLTNLRELDLSGNSLS 290 (394)
T ss_pred ccCccCEEeccCcccc
Confidence 8889999998765443
No 43
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.63 E-value=9.9e-06 Score=78.06 Aligned_cols=85 Identities=25% Similarity=0.349 Sum_probs=57.4
Q ss_pred cccCCCccEEEeecc-ccCC--C----CCccCCCCCceEEeeccc-cCHHHHHHHHcCCCCccEEeeecCCCCCccCcC-
Q 018344 32 VFYLKSIYVLDFEFC-KLEP--P----RSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQLL- 102 (357)
Q Consensus 32 i~~~~~L~~L~Ls~~-~~~~--p----~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~- 102 (357)
...+..|+.|++++| .... + .....+++|+.|+++++. +++..+..+...|++|++|.+.+|..++...+.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345778888888763 2211 1 133456888888888887 577777777777888888887777765443322
Q ss_pred ---CCCCccEEEecccC
Q 018344 103 ---GLNKLKEIKLDSNR 116 (357)
Q Consensus 103 ---~~~~L~~L~l~~c~ 116 (357)
++++|++|++++|.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 45778888888877
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00016 Score=66.96 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=80.3
Q ss_pred cCCCccEEEeeccccCC-CCCccCC-CCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEE
Q 018344 34 YLKSIYVLDFEFCKLEP-PRSTVTL-FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK 111 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~-p~~~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~ 111 (357)
.|.++++|++++|.+.. | .+ ++|++|.+++|.- ...++..+ .++|++|++++|..+..++ ++|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGLP----ESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCcccccccc----cccceEE
Confidence 46788888888886655 4 23 3688888887632 11122212 2478888888886665432 4677787
Q ss_pred ecccCCCcceeEeecceeeEEEEeecCCCceeecc-cc-ccccceeecccccCHHHHHHHhccC-Cccceeeccccc--c
Q 018344 112 LDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVS-SC-KNLTHLRLDGLSITDKWLYNQISEL-PFLEYLALHYCM--K 186 (357)
Q Consensus 112 l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~L~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~--~ 186 (357)
+..+. ...+....++|+.|.+.+.......... .+ ++|+.|.+.++.... ++ ..+ ++|+.|+++.+. .
T Consensus 119 L~~n~--~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~--LP---~~LP~SLk~L~ls~n~~~s 191 (426)
T PRK15386 119 IKGSA--TDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII--LP---EKLPESLQSITLHIEQKTT 191 (426)
T ss_pred eCCCC--CcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc--Cc---ccccccCcEEEeccccccc
Confidence 76433 2222222346666666431100000011 12 467888887665421 11 112 367777775432 1
Q ss_pred cccc-ccccccccEEEcccccc
Q 018344 187 LRSI-NISSPRLKELVFERCEE 207 (357)
Q Consensus 187 l~~l-~~~~~~L~~L~l~~c~~ 207 (357)
+... ...++++ .|.+.+|-.
T Consensus 192 LeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 192 WNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred ccCccccccccc-Eechhhhcc
Confidence 1111 1113455 666666633
No 45
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.46 E-value=3e-05 Score=74.69 Aligned_cols=101 Identities=13% Similarity=0.171 Sum_probs=46.0
Q ss_pred CCCccEEEeeccccCCC----CCccCCCCCceEEeecc-c-c--CHHHHHHHHcCCCCccEEeeecCCCCCccCcC----
Q 018344 35 LKSIYVLDFEFCKLEPP----RSTVTLFSLRKLCLSFV-H-V--DDEVIRDMVAGCPLIEYININNCPGLKSLQLL---- 102 (357)
Q Consensus 35 ~~~L~~L~Ls~~~~~~p----~~~~~l~~L~~L~L~~~-~-~--~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~---- 102 (357)
+++|+.|.+.+|..... .....+++|+.|+++++ . . .......+...|++|+.|++++|..++...+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666555532221 12344566666666541 1 1 11122234445566666666655543332221
Q ss_pred CCCCccEEEecccCCCcc-----eeEeecceeeEEEEee
Q 018344 103 GLNKLKEIKLDSNRCGLE-----RVYINGVNVHSVDIKV 136 (357)
Q Consensus 103 ~~~~L~~L~l~~c~~~l~-----~~~~~~p~L~~L~l~~ 136 (357)
.|++|++|.+..|. .+. .+.-.+|+|++|++++
T Consensus 267 ~c~~L~~L~l~~c~-~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 267 RCPNLETLSLSNCS-NLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred hCCCcceEccCCCC-ccchhHHHHHHHhcCcccEEeeec
Confidence 14556666655554 221 1222355566666554
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.39 E-value=0.00029 Score=70.14 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=35.3
Q ss_pred ccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccEEEec
Q 018344 38 IYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLD 113 (357)
Q Consensus 38 L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L~l~ 113 (357)
++.|+|+++.+.. |..+.++++|+.|+|++|.+... ++..++.+++|+.|+|++|..-..+ .+.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4445555554433 33444555555555555544221 2333445555555555554322111 12334455555555
Q ss_pred ccC
Q 018344 114 SNR 116 (357)
Q Consensus 114 ~c~ 116 (357)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 544
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.31 E-value=9.6e-06 Score=76.27 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=56.7
Q ss_pred EecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCC
Q 018344 19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK 97 (357)
Q Consensus 19 ~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~ 97 (357)
|++.+...++|..+..+..|+.+.|+.+.+.. |..+.++..|.+|+|+.|.++ .++.-+..|| |+.|-++++. ++
T Consensus 81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNk-l~ 156 (722)
T KOG0532|consen 81 DLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNK-LT 156 (722)
T ss_pred hccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCc-cc
Confidence 44455666777766666677777776655444 556677777777777777442 2333344555 6777776654 33
Q ss_pred cc--CcCCCCCccEEEecccC
Q 018344 98 SL--QLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 98 ~l--~l~~~~~L~~L~l~~c~ 116 (357)
.+ .+...++|..|+.+.|.
T Consensus 157 ~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred cCCcccccchhHHHhhhhhhh
Confidence 32 33334667777777665
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.19 E-value=0.00028 Score=43.69 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=15.5
Q ss_pred CccEEEeeccccCC-CCCccCCCCCceEEeecccc
Q 018344 37 SIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV 70 (357)
Q Consensus 37 ~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~ 70 (357)
+|++|++++|.+.. |+.+.+|++|++|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45555555554444 32344555555555555543
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00031 Score=70.18 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=74.6
Q ss_pred CCCccEEeeecCCCCCccC---cC-CCCCccEEEecccCCC---cceeEeecceeeEEEEeecCCCceeeccccccccce
Q 018344 82 CPLIEYININNCPGLKSLQ---LL-GLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHL 154 (357)
Q Consensus 82 ~~~L~~L~L~~c~~l~~l~---l~-~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L 154 (357)
-.+|++|++++......-+ ++ -+|+|++|.+.+-.+. ........|+|.+|+++|+.+..-.+.+++++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 3578888887743322111 11 2488888888764422 223345678888888888655422356677888888
Q ss_pred eecccccCH-HHHHHHhccCCccceeecccccccccc---------ccccccccEEEcccc
Q 018344 155 RLDGLSITD-KWLYNQISELPFLEYLALHYCMKLRSI---------NISSPRLKELVFERC 205 (357)
Q Consensus 155 ~L~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~l~~l---------~~~~~~L~~L~l~~c 205 (357)
.+.+-.+.. ..+.. +-++.+|+.||+|........ ....|.|+.|+.++-
T Consensus 201 ~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 888877754 33344 345889999998854433111 112567777776643
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00031 Score=61.35 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=54.6
Q ss_pred ccccCCCccEEEeeccccCCCC---C-ccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCC---CccCcC
Q 018344 31 IVFYLKSIYVLDFEFCKLEPPR---S-TVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGL---KSLQLL 102 (357)
Q Consensus 31 ~i~~~~~L~~L~Ls~~~~~~p~---~-~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l---~~l~l~ 102 (357)
+++....+..|.+.+|.+.... . -...+.++.++|.+|.+ ..+.+..++.++|.|+.|+++.|..- ..++.
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~- 118 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL- 118 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-
Confidence 3444445556677777665422 1 23578999999999998 66778888899999999999887632 22221
Q ss_pred CCCCccEEEeccc
Q 018344 103 GLNKLKEIKLDSN 115 (357)
Q Consensus 103 ~~~~L~~L~l~~c 115 (357)
-..+|+.|.+.+.
T Consensus 119 p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 119 PLKNLRVLVLNGT 131 (418)
T ss_pred cccceEEEEEcCC
Confidence 1135555555543
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.08 E-value=0.00013 Score=74.76 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=66.4
Q ss_pred eecCcccccCCCccEEEeeccc--cCC-CC-CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC-
Q 018344 26 YNLPQIVFYLKSIYVLDFEFCK--LEP-PR-STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ- 100 (357)
Q Consensus 26 ~~lP~~i~~~~~L~~L~Ls~~~--~~~-p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~- 100 (357)
..++... .+++|+.|-+.++. +.. +. .|..+|.|++|+|++|. ....+|..++.+-+|++|+++++. +..++
T Consensus 536 ~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~ 612 (889)
T KOG4658|consen 536 EHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTG-ISHLPS 612 (889)
T ss_pred hhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCC-ccccch
Confidence 3444332 34578888887764 322 22 36678888888888763 344567778888888888888754 44332
Q ss_pred -cCCCCCccEEEecccCCCccee---EeecceeeEEEEeec
Q 018344 101 -LLGLNKLKEIKLDSNRCGLERV---YINGVNVHSVDIKVY 137 (357)
Q Consensus 101 -l~~~~~L~~L~l~~c~~~l~~~---~~~~p~L~~L~l~~~ 137 (357)
+.++..|.+|++..+. ....+ ....++|++|.+...
T Consensus 613 ~l~~Lk~L~~Lnl~~~~-~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTG-RLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHHHHhhheecccccc-ccccccchhhhcccccEEEeecc
Confidence 2344667777777665 22222 223567777777653
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.94 E-value=0.0015 Score=60.56 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=67.9
Q ss_pred CCCCCceEEeeccccCHHHHHHHHcCCC-CccEEeeecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEE
Q 018344 56 TLFSLRKLCLSFVHVDDEVIRDMVAGCP-LIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDI 134 (357)
Q Consensus 56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~-~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l 134 (357)
.++++++|++++|.+. .++ .+| +|++|.+++|..++.++-.-.++|++|.+++|. .+..+ .++|++|.+
T Consensus 50 ~~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEEe
Confidence 4677777777777432 222 223 477777777776655442112567777777775 33322 235666666
Q ss_pred eecCCCceeecccc-ccccceeeccccc-CHHHHHHHhccC-CccceeeccccccccccccccccccEEEcccc
Q 018344 135 KVYLEPCEVNVSSC-KNLTHLRLDGLSI-TDKWLYNQISEL-PFLEYLALHYCMKLRSINISSPRLKELVFERC 205 (357)
Q Consensus 135 ~~~~~~~~~~~~~~-~~L~~L~L~~~~i-~~~~~~~l~~~~-~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 205 (357)
.+.... .++.+ ++|+.|.+.+... .....+ ..+ ++|+.|++++|..+......+.+|+.|.++.+
T Consensus 120 ~~n~~~---~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATD---SIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCCCc---ccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 543221 12223 2466666643221 000001 112 46777777766654321223456777776553
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00054 Score=58.76 Aligned_cols=115 Identities=21% Similarity=0.152 Sum_probs=74.3
Q ss_pred chHHHHHHh-----CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeecccc-CHHHH
Q 018344 2 NRCLSYAFA-----SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHV-DDEVI 75 (357)
Q Consensus 2 ~~~i~~~~~-----~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~~l 75 (357)
.+|+.+... ..|+++.+|-+....-.+....-...+|+.|++.++.+.+-..+-.+|+||+|.++.|+. ....+
T Consensus 4 ~~~~~~e~~~rsp~~~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l 83 (260)
T KOG2739|consen 4 KRLIHLELRGRSPREQVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGL 83 (260)
T ss_pred hhhHHHhhccCChhhhhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccc
Confidence 345555444 345667676433222234433345667888888888777655677889999999999954 22345
Q ss_pred HHHHcCCCCccEEeeecCCC--CCcc-CcCCCCCccEEEecccC
Q 018344 76 RDMVAGCPLIEYININNCPG--LKSL-QLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 76 ~~l~~~~~~L~~L~L~~c~~--l~~l-~l~~~~~L~~L~l~~c~ 116 (357)
.-++..||+|++|++++|.. +..+ .+..+.+|..|++..|.
T Consensus 84 ~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 84 EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred eehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 55666789999999999763 2222 12234677788888776
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.66 E-value=0.00039 Score=65.77 Aligned_cols=135 Identities=19% Similarity=0.283 Sum_probs=72.4
Q ss_pred CcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--
Q 018344 23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-- 99 (357)
Q Consensus 23 ~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-- 99 (357)
+....+|..+.++..|+.|+|+.|.+.. |..+..| -|++|-+++|.++ .++.-++..+.|..|+.+.|.. ..+
T Consensus 108 n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei-~slps 183 (722)
T KOG0532|consen 108 NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEI-QSLPS 183 (722)
T ss_pred ccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccc--cCCcccccchhHHHhhhhhhhh-hhchH
Confidence 3455667777777777777777766554 4333333 3677777776542 1233344556666666666542 222
Q ss_pred CcCCCCCccEEEecccCC-Cc-ceeEeecceeeEEEEeecCCC-ceeeccccccccceeecccccCH
Q 018344 100 QLLGLNKLKEIKLDSNRC-GL-ERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITD 163 (357)
Q Consensus 100 ~l~~~~~L~~L~l~~c~~-~l-~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~ 163 (357)
.+.++.+|+.|.+..++. .+ .+.. .+ .|.+|+++.+.+. ....|..|+.|+.|.|++|.+..
T Consensus 184 ql~~l~slr~l~vrRn~l~~lp~El~-~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRRNHLEDLPEELC-SL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HhhhHHHHHHHHHhhhhhhhCCHHHh-CC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 222334555555555541 11 1111 11 4555566553321 12667777888888888877643
No 55
>PLN03150 hypothetical protein; Provisional
Probab=96.66 E-value=0.0021 Score=64.06 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=74.1
Q ss_pred EEEecCCcc-eecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 17 KLDVGCCRI-YNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 17 ~l~~~~~~~-~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
.|+++.+.. ..+|..+..+++|+.|+|++|.+.+ |..+..+++|+.|+|++|.++.. ++..++++++|+.|+|++|
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCC
Confidence 355666544 3788899999999999999998865 66789999999999999988543 4566789999999999998
Q ss_pred CCCCccC--cCC-CCCccEEEecccC
Q 018344 94 PGLKSLQ--LLG-LNKLKEIKLDSNR 116 (357)
Q Consensus 94 ~~l~~l~--l~~-~~~L~~L~l~~c~ 116 (357)
..-..++ +.. ..++..+++.+|.
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cccccCChHHhhccccCceEEecCCc
Confidence 6432322 111 1345677777765
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.59 E-value=0.00017 Score=68.41 Aligned_cols=81 Identities=28% Similarity=0.264 Sum_probs=47.2
Q ss_pred cccCCCccEEEeeccccCCCCC-ccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccE
Q 018344 32 VFYLKSIYVLDFEFCKLEPPRS-TVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKE 109 (357)
Q Consensus 32 i~~~~~L~~L~Ls~~~~~~p~~-~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~ 109 (357)
+..+++|+.|++.++.+..... ...+++|++|++++|.+ +...+ ..++.|+.|++.+|..-..-.+..+..|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhhc
Confidence 4456677777777776665333 56677777777777766 22222 234457777777765322112222456666
Q ss_pred EEecccC
Q 018344 110 IKLDSNR 116 (357)
Q Consensus 110 L~l~~c~ 116 (357)
+++++|.
T Consensus 167 l~l~~n~ 173 (414)
T KOG0531|consen 167 LDLSYNR 173 (414)
T ss_pred ccCCcch
Confidence 6666665
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.44 E-value=4.2e-05 Score=74.09 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=10.2
Q ss_pred cccccccceeeccccc
Q 018344 146 SSCKNLTHLRLDGLSI 161 (357)
Q Consensus 146 ~~~~~L~~L~L~~~~i 161 (357)
..+..|+.|.|.||.+
T Consensus 276 wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 276 WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHHHHHHHhhcCCcc
Confidence 3455677777777665
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.35 E-value=0.01 Score=49.18 Aligned_cols=81 Identities=21% Similarity=0.147 Sum_probs=55.1
Q ss_pred CCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC--CCcc-CcCCCCCccEEE
Q 018344 35 LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--LKSL-QLLGLNKLKEIK 111 (357)
Q Consensus 35 ~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~--l~~l-~l~~~~~L~~L~ 111 (357)
......++|+++.+..-..+..++.|.+|.|.+|.++.-. +.+-.-+|+|..|.|.+|+. +..+ .+..||+|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3467778888887765446778899999999999873211 23334578889999988763 1121 334567888887
Q ss_pred ecccC
Q 018344 112 LDSNR 116 (357)
Q Consensus 112 l~~c~ 116 (357)
+-++.
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 77665
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.22 E-value=0.0032 Score=38.89 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=26.3
Q ss_pred CCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 58 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
++|++|++++|.+++ ++..++++++|+.|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578999999997753 45557889999999998875
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.0013 Score=56.52 Aligned_cols=100 Identities=23% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCccEEeeecCCCCCccCcCCCCCccEEEecccCC----CcceeEeecceeeEEEEeecCCCc---eeeccccccccce
Q 018344 82 CPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC----GLERVYINGVNVHSVDIKVYLEPC---EVNVSSCKNLTHL 154 (357)
Q Consensus 82 ~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~----~l~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~~L~~L 154 (357)
...|+.|++.++...+...+..+|+|++|.++.|.+ ++......+|+|+++.++++.+.. ......+.+|+.|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 445666666666544444455567888888887731 222223346777777777754321 1123455667777
Q ss_pred eecccccCH--HHHHHHhccCCccceeec
Q 018344 155 RLDGLSITD--KWLYNQISELPFLEYLAL 181 (357)
Q Consensus 155 ~L~~~~i~~--~~~~~l~~~~~~L~~L~l 181 (357)
++..+..+. +.-...+.-+|+|+.|+-
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccc
Confidence 777665432 222344555677777764
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.11 E-value=0.0044 Score=53.68 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=57.7
Q ss_pred cCcccccCCCccEEEeeccccCC-----C-------CCccCCCCCceEEeecccc---CHHHHHHHHcCCCCccEEeeec
Q 018344 28 LPQIVFYLKSIYVLDFEFCKLEP-----P-------RSTVTLFSLRKLCLSFVHV---DDEVIRDMVAGCPLIEYININN 92 (357)
Q Consensus 28 lP~~i~~~~~L~~L~Ls~~~~~~-----p-------~~~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~~~L~~L~L~~ 92 (357)
+-..+.+-++|+.-+++...... + ....+||.|+..+||.|.+ ....+..++++...|++|.|++
T Consensus 50 l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 50 LCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred HHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence 33444556678888877642211 1 1345789999999999987 3455667788888999999998
Q ss_pred CCCCCcc----------------CcCCCCCccEEEecccC
Q 018344 93 CPGLKSL----------------QLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 93 c~~l~~l----------------~l~~~~~L~~L~l~~c~ 116 (357)
|.. ..+ ...+-|.|+......|+
T Consensus 130 nGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 130 NGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred CCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 863 111 01123778888777776
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.07 E-value=0.01 Score=49.15 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=55.4
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
+|++++....++. +-.++.|..|.|..|.+.. |..-.-+|+|++|.|.+|++ ....+.. +..||.|++|.+-+++
T Consensus 47 iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 47 IDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred ecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 5666665554442 3457899999999988766 44445689999999999977 4444444 3579999999998876
Q ss_pred C
Q 018344 95 G 95 (357)
Q Consensus 95 ~ 95 (357)
.
T Consensus 125 v 125 (233)
T KOG1644|consen 125 V 125 (233)
T ss_pred h
Confidence 3
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.58 E-value=0.0022 Score=60.85 Aligned_cols=124 Identities=22% Similarity=0.158 Sum_probs=64.7
Q ss_pred CCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEec
Q 018344 35 LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLD 113 (357)
Q Consensus 35 ~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~ 113 (357)
+..++.+++..+.+.. -.....+.+|..|++.+|.+ ..+...+.++++|++|+++++..-..-.+..++.|+.|.+.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 4555555555555443 22456677777777777744 22233245567777777777653222233344557777777
Q ss_pred ccCC-CcceeEeecceeeEEEEeecCCCceee--ccccccccceeeccccc
Q 018344 114 SNRC-GLERVYINGVNVHSVDIKVYLEPCEVN--VSSCKNLTHLRLDGLSI 161 (357)
Q Consensus 114 ~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~--~~~~~~L~~L~L~~~~i 161 (357)
+|.. ....+ -..+.|+.+.+++........ ...+.+++.+.+.++.+
T Consensus 149 ~N~i~~~~~~-~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 149 GNLISDISGL-ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cCcchhccCC-ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 6652 11111 114455666665543321112 24556666677766654
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.0029 Score=52.29 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=63.8
Q ss_pred cceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCccC
Q 018344 24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSLQ 100 (357)
Q Consensus 24 ~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~ 100 (357)
..+++|-.-..--.++.++-+++.+.. -..+.+++.++.|.+.+|.- .+..+..+-+-.|+|+.|++++|+.++.-.
T Consensus 89 g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 89 GYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred ceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 345777543333357777777765432 22566788888999999865 888888888888999999999999877654
Q ss_pred cC---CCCCccEEEecc
Q 018344 101 LL---GLNKLKEIKLDS 114 (357)
Q Consensus 101 l~---~~~~L~~L~l~~ 114 (357)
+. .+++|+.|.+.+
T Consensus 169 L~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHHhhhhHHHHhcC
Confidence 33 346777776653
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0028 Score=55.02 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=41.6
Q ss_pred cceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccc
Q 018344 126 GVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK 186 (357)
Q Consensus 126 ~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 186 (357)
.|.|+.|.++-+.+..-..+..|++|++|+|..|.|.+-.--..+.++|+|+.|.|..++.
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 4455555554443332235678999999999999886533344578999999999976543
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.27 E-value=0.012 Score=50.98 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=108.3
Q ss_pred cCCCccEEEeeccccCCC------CCccCCCCCceEEeecccc---CHHH------HHHHHcCCCCccEEeeecCCC-CC
Q 018344 34 YLKSIYVLDFEFCKLEPP------RSTVTLFSLRKLCLSFVHV---DDEV------IRDMVAGCPLIEYININNCPG-LK 97 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~p------~~~~~l~~L~~L~L~~~~~---~~~~------l~~l~~~~~~L~~L~L~~c~~-l~ 97 (357)
.+++++.++||+|.+... ..+.+-.+|+..+++.... .++. +-..+..||.|+..+|+.|.. .+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 477899999999987761 1345678899999987643 2221 222345899999999998753 11
Q ss_pred cc-----CcCCCCCccEEEecccCCCcc---ee------------EeecceeeEEEEeecCCC-c-----eeeccccccc
Q 018344 98 SL-----QLLGLNKLKEIKLDSNRCGLE---RV------------YINGVNVHSVDIKVYLEP-C-----EVNVSSCKNL 151 (357)
Q Consensus 98 ~l-----~l~~~~~L~~L~l~~c~~~l~---~~------------~~~~p~L~~L~l~~~~~~-~-----~~~~~~~~~L 151 (357)
.. -+++...|++|.+.+|..+.. .+ .-+.|.|+++....+..- + ...+.+-.+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 11 123447899999998863211 01 225788888877653221 1 1123333579
Q ss_pred cceeecccccCHHHHHH----HhccCCccceeeccccccc--cccc-----cccccccEEEcccc
Q 018344 152 THLRLDGLSITDKWLYN----QISELPFLEYLALHYCMKL--RSIN-----ISSPRLKELVFERC 205 (357)
Q Consensus 152 ~~L~L~~~~i~~~~~~~----l~~~~~~L~~L~l~~~~~l--~~l~-----~~~~~L~~L~l~~c 205 (357)
+.+.+..|.|..+.+.. -+..+.+|+.|++..+..- .+.. ..-+.|++|.+.+|
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 99999988886643332 2456889999999754422 1111 11345789999988
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.39 E-value=0.0065 Score=47.26 Aligned_cols=81 Identities=21% Similarity=0.404 Sum_probs=57.0
Q ss_pred CeEEE-EEecCCcceecCcccccC---CCccEEEeeccccCC-CCC-ccCCCCCceEEeeccccCHHHHHHHHcCCCCcc
Q 018344 13 VKELK-LDVGCCRIYNLPQIVFYL---KSIYVLDFEFCKLEP-PRS-TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIE 86 (357)
Q Consensus 13 v~~l~-l~~~~~~~~~lP~~i~~~---~~L~~L~Ls~~~~~~-p~~-~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~ 86 (357)
.+|+. +|++.+....+|+.+..+ ..|+..+|++|.+.. |.. ...++..+.++|++|.+++ ++.-+...|.|+
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr 103 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALR 103 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhh
Confidence 34443 566666666677666554 456666899998876 443 3567899999999997644 344467789999
Q ss_pred EEeeecCCC
Q 018344 87 YININNCPG 95 (357)
Q Consensus 87 ~L~L~~c~~ 95 (357)
.|+++.|+.
T Consensus 104 ~lNl~~N~l 112 (177)
T KOG4579|consen 104 SLNLRFNPL 112 (177)
T ss_pred hcccccCcc
Confidence 999999875
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=0.0084 Score=52.16 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=56.0
Q ss_pred cCCCccEEEeeccccCCCCCccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCcc-------CcCCCC
Q 018344 34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSL-------QLLGLN 105 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-------~l~~~~ 105 (357)
.++.|++|.||-|.+..-..+..|++|++|.|..|.+ +.+.+.- +.++|+|+.|.|..|+-...- -+.-+|
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 4678999999998877755778899999999999988 4444444 568999999999876643221 112357
Q ss_pred CccEEE
Q 018344 106 KLKEIK 111 (357)
Q Consensus 106 ~L~~L~ 111 (357)
+|++||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 787775
No 69
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=92.22 E-value=0.17 Score=27.15 Aligned_cols=25 Identities=36% Similarity=0.777 Sum_probs=20.9
Q ss_pred CCceEEeecccc-CHHHHHHHHcCCC
Q 018344 59 SLRKLCLSFVHV-DDEVIRDMVAGCP 83 (357)
Q Consensus 59 ~L~~L~L~~~~~-~~~~l~~l~~~~~ 83 (357)
+||+|.|..+.+ .+..+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 588999999988 5557899999887
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.07 E-value=0.027 Score=43.93 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=26.8
Q ss_pred EEEecCCcceecCccccc-CCCccEEEeeccccCC-CCCccCCCCCceEEeecccc
Q 018344 17 KLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV 70 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~-~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~ 70 (357)
.++++++....+|+.+.. .+.++.|+|+++.+.. |..+..++.|+.|+++.|.+
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred EEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 345555555555544432 3345555555554444 44455555555555555544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.41 E-value=0.19 Score=25.64 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=8.2
Q ss_pred CccEEEeeccccCC
Q 018344 37 SIYVLDFEFCKLEP 50 (357)
Q Consensus 37 ~L~~L~Ls~~~~~~ 50 (357)
+|++|++++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 35666666665543
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.20 E-value=0.3 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=13.5
Q ss_pred CCCCceEEeeccccCHHHHHHH
Q 018344 57 LFSLRKLCLSFVHVDDEVIRDM 78 (357)
Q Consensus 57 l~~L~~L~L~~~~~~~~~l~~l 78 (357)
+++|++|+|++|.++++.+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3677888888887766666554
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.29 E-value=0.59 Score=35.87 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=36.5
Q ss_pred cCcccc-cCCCccEEEeecc-ccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC-CCCccCcCCC
Q 018344 28 LPQIVF-YLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP-GLKSLQLLGL 104 (357)
Q Consensus 28 lP~~i~-~~~~L~~L~Ls~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~-~l~~l~l~~~ 104 (357)
+|...+ +|++|+.+.+... .-.....+.++++|+.+.+..+-.... ...+.+|+.|+.+.+.... .+..-....+
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFPNNLKSIGDNAFSNC 80 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETSTT-EE-TTTTTT-
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhcccccccccccccccccccc--eeeeeccccccccccccccccccccccccc
Confidence 444443 4667888777642 212234667777788887776411111 2234566677777775411 1112122234
Q ss_pred CCccEEEec
Q 018344 105 NKLKEIKLD 113 (357)
Q Consensus 105 ~~L~~L~l~ 113 (357)
++|+.+.+.
T Consensus 81 ~~l~~i~~~ 89 (129)
T PF13306_consen 81 TNLKNIDIP 89 (129)
T ss_dssp TTECEEEET
T ss_pred ccccccccC
Confidence 566666553
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.15 E-value=0.098 Score=43.51 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=31.6
Q ss_pred ccccccccceeeccccc-CHHHHHHHhccCCccceeeccccccccccccc----cccccEEEccccc
Q 018344 145 VSSCKNLTHLRLDGLSI-TDKWLYNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCE 206 (357)
Q Consensus 145 ~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~ 206 (357)
+.+++.++.|.+.++.. .|..+..+-.-.|+|+.|+|+.|+.+++-... .++|+.|.+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 33445556666665543 33334444444566666666666665432221 4555555555443
No 75
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=87.96 E-value=1.1 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=30.9
Q ss_pred CCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEeec
Q 018344 293 PLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEW 334 (357)
Q Consensus 293 ~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~~ 334 (357)
...+|+.+++.++. ....-.+++..+++++|.||+++|.+
T Consensus 12 l~s~Lk~v~~~~f~--g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 12 LLSHLKFVEIKGFR--GEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred hhheeEEEEEEeee--CcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 34688999998875 23334678899999999999999853
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.66 E-value=0.86 Score=21.60 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.3
Q ss_pred CccEEEeeccc
Q 018344 37 SIYVLDFEFCK 47 (357)
Q Consensus 37 ~L~~L~Ls~~~ 47 (357)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444444
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.36 E-value=1.5 Score=23.31 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=9.6
Q ss_pred CCCceEEeeccc-cCHHHHHH
Q 018344 58 FSLRKLCLSFVH-VDDEVIRD 77 (357)
Q Consensus 58 ~~L~~L~L~~~~-~~~~~l~~ 77 (357)
++|++|+|++|. +++..+..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 445555555553 34444444
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.53 E-value=1.7 Score=23.67 Aligned_cols=22 Identities=41% Similarity=0.365 Sum_probs=15.9
Q ss_pred CCCceEEeeccccCHHHHHHHH
Q 018344 58 FSLRKLCLSFVHVDDEVIRDMV 79 (357)
Q Consensus 58 ~~L~~L~L~~~~~~~~~l~~l~ 79 (357)
++|++|+|++|.+.++....+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5688888888888766655543
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.64 E-value=2.2 Score=41.13 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=45.7
Q ss_pred HHHHcCCCCccEEeeecCCCCCccCcC----CCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccc
Q 018344 76 RDMVAGCPLIEYININNCPGLKSLQLL----GLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNL 151 (357)
Q Consensus 76 ~~l~~~~~~L~~L~L~~c~~l~~l~l~----~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L 151 (357)
+.+-.+.|.+..++|++|....--.++ ..|+|+.|+|++|. ..... . ... ..+++ ..|
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~-~~~~~---~----------~el---~K~k~-l~L 272 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNH-SKISS---E----------SEL---DKLKG-LPL 272 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccch-hhhcc---h----------hhh---hhhcC-CCH
Confidence 444446777888887776531111111 12667777776653 00000 0 000 12223 238
Q ss_pred cceeecccccCH------HHHHHHhccCCccceee
Q 018344 152 THLRLDGLSITD------KWLYNQISELPFLEYLA 180 (357)
Q Consensus 152 ~~L~L~~~~i~~------~~~~~l~~~~~~L~~L~ 180 (357)
++|.+.||.++. +.+..+-..||.|..||
T Consensus 273 eel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 273 EELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 888888887754 33344455788888887
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.26 E-value=1.2 Score=34.14 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=25.5
Q ss_pred CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc---CcCCCCCccEEEec
Q 018344 53 STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLKEIKLD 113 (357)
Q Consensus 53 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l---~l~~~~~L~~L~l~ 113 (357)
.+.++++|+.+.+... +. ..-...+.+|++|+.+.+... +..+ ...++++++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~~-~~-~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-IK-KIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECCC-ee-EeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 5667777888877643 11 000122456777887777652 3332 23344456666664
No 81
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=67.84 E-value=9.1 Score=26.02 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=30.9
Q ss_pred CCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEeecCC
Q 018344 295 TYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPN 336 (357)
Q Consensus 295 ~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~~~~ 336 (357)
..|+.+++.++. ....-.+.+..+++++|.||++.|..++
T Consensus 5 ~~Lk~v~i~~f~--g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYR--GTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEecc--CcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 468899998874 2334467889999999999999995543
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.12 E-value=8.7 Score=20.09 Aligned_cols=13 Identities=38% Similarity=0.301 Sum_probs=7.6
Q ss_pred CCCceEEeecccc
Q 018344 58 FSLRKLCLSFVHV 70 (357)
Q Consensus 58 ~~L~~L~L~~~~~ 70 (357)
++|++|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666666644
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.12 E-value=8.7 Score=20.09 Aligned_cols=13 Identities=38% Similarity=0.301 Sum_probs=7.6
Q ss_pred CCCceEEeecccc
Q 018344 58 FSLRKLCLSFVHV 70 (357)
Q Consensus 58 ~~L~~L~L~~~~~ 70 (357)
++|++|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666666644
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.68 E-value=7.9 Score=37.45 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=37.2
Q ss_pred cCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCC-CCc---cCcCCCCCccEEEecccC
Q 018344 55 VTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPG-LKS---LQLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 55 ~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~-l~~---l~l~~~~~L~~L~l~~c~ 116 (357)
.+.|.+..++|++|.+ ..+.+..+....|+|..|+|+++.. +.. ++-.+...|++|-+.+|.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 4667777777777776 6666677777777777777777621 111 111111456666666665
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=40.93 E-value=20 Score=19.15 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=7.1
Q ss_pred CCCceEEeecccc
Q 018344 58 FSLRKLCLSFVHV 70 (357)
Q Consensus 58 ~~L~~L~L~~~~~ 70 (357)
.+|++|+|+.|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4555555555544
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=27.03 E-value=1.9 Score=37.05 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=29.1
Q ss_pred eecC-cccccCCCccEEEeeccccCC-CCCccCCCCCceEEeecccc
Q 018344 26 YNLP-QIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV 70 (357)
Q Consensus 26 ~~lP-~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~ 70 (357)
.++| ..+...+.-+.||++.+.+.. -..+..++.|..|+++.+.+
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~ 77 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI 77 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhH
Confidence 4455 235566777888888776544 23556677777788887754
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=20.31 E-value=5.6 Score=34.26 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=50.4
Q ss_pred HHhCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCcc
Q 018344 8 AFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIE 86 (357)
Q Consensus 8 ~~~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~ 86 (357)
|...+|+. +|++.+....+-.-+.-++.|+.|+++.+.... |..+..+..++.+++.+|. -+..+......|+++
T Consensus 39 ~~~kr~tv--ld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~--~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTV--LDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN--HSQQPKSQKKEPHPK 114 (326)
T ss_pred hccceeee--ehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc--hhhCCccccccCCcc
Confidence 33344444 445665555555555556677788888765444 5566777777777777763 233344445667777
Q ss_pred EEeeecCC
Q 018344 87 YININNCP 94 (357)
Q Consensus 87 ~L~L~~c~ 94 (357)
++++.++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 77776655
Done!