Query 018344
Match_columns 357
No_of_seqs 321 out of 2555
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 3E-17 1E-21 149.2 11.8 197 11-212 81-294 (328)
2 4eco_A Uncharacterized protein 99.7 4.3E-17 1.5E-21 161.2 9.2 193 28-225 239-466 (636)
3 4fmz_A Internalin; leucine ric 99.7 1.3E-16 4.5E-21 145.9 10.3 189 11-211 44-236 (347)
4 4ecn_A Leucine-rich repeat pro 99.7 8.8E-17 3E-21 162.8 9.6 286 28-332 481-813 (876)
5 4fmz_A Internalin; leucine ric 99.6 1.2E-15 4E-20 139.6 11.5 271 11-332 66-340 (347)
6 3rgz_A Protein brassinosteroid 99.6 3.8E-16 1.3E-20 157.7 8.6 171 33-205 197-378 (768)
7 1o6v_A Internalin A; bacterial 99.6 1.5E-15 5E-20 144.7 11.9 184 11-205 46-231 (466)
8 3ogk_B Coronatine-insensitive 99.6 7E-16 2.4E-20 151.1 9.8 148 56-204 190-351 (592)
9 3rgz_A Protein brassinosteroid 99.6 1.5E-16 5.1E-21 160.7 4.3 177 27-205 91-279 (768)
10 2id5_A Lingo-1, leucine rich r 99.6 3.2E-16 1.1E-20 149.6 5.5 185 18-209 16-214 (477)
11 1o6v_A Internalin A; bacterial 99.6 2.7E-15 9.1E-20 142.9 11.5 288 11-332 68-382 (466)
12 2p1m_B Transport inhibitor res 99.6 2.2E-15 7.7E-20 147.5 10.1 284 34-333 154-539 (594)
13 4ecn_A Leucine-rich repeat pro 99.6 1.9E-15 6.7E-20 153.0 9.1 156 51-211 441-634 (876)
14 4eco_A Uncharacterized protein 99.6 4.6E-16 1.6E-20 153.8 4.0 156 51-211 199-392 (636)
15 2z81_A CD282 antigen, TOLL-lik 99.6 7E-16 2.4E-20 149.8 4.7 80 12-94 27-109 (549)
16 3vq2_A TLR4, TOLL-like recepto 99.6 1.1E-15 3.7E-20 150.2 5.9 74 21-94 88-164 (606)
17 2z81_A CD282 antigen, TOLL-lik 99.6 4.6E-14 1.6E-18 136.9 16.5 141 18-162 10-161 (549)
18 3j0a_A TOLL-like receptor 5; m 99.6 4.2E-15 1.4E-19 151.6 9.5 76 19-94 79-159 (844)
19 2ast_B S-phase kinase-associat 99.6 6.7E-15 2.3E-19 133.8 9.7 202 3-210 38-262 (336)
20 3v47_A TOLL-like receptor 5B a 99.6 9.3E-15 3.2E-19 138.5 10.5 299 12-332 31-402 (455)
21 3t6q_A CD180 antigen; protein- 99.6 8.4E-16 2.9E-20 151.0 3.3 78 127-205 278-360 (606)
22 2p1m_B Transport inhibitor res 99.6 4.2E-15 1.4E-19 145.6 8.3 170 34-204 103-347 (594)
23 3o6n_A APL1; leucine-rich repe 99.6 4.9E-15 1.7E-19 137.7 8.0 145 12-161 46-198 (390)
24 3o6n_A APL1; leucine-rich repe 99.6 2.1E-14 7E-19 133.5 12.1 255 11-306 69-350 (390)
25 3oja_B Anopheles plasmodium-re 99.5 3.5E-15 1.2E-19 146.5 7.0 139 20-161 58-204 (597)
26 2id5_A Lingo-1, leucine rich r 99.5 2.3E-15 7.9E-20 143.7 5.6 278 12-306 33-331 (477)
27 2z7x_B TOLL-like receptor 1, v 99.5 1E-14 3.5E-19 140.7 8.6 99 12-116 22-126 (520)
28 2z7x_B TOLL-like receptor 1, v 99.5 1.4E-14 4.7E-19 139.8 9.1 140 17-161 4-150 (520)
29 3t6q_A CD180 antigen; protein- 99.5 1.9E-14 6.5E-19 141.4 9.9 192 16-210 257-463 (606)
30 2z80_A TOLL-like receptor 2, v 99.5 2.6E-13 8.8E-18 124.4 16.6 262 18-306 36-312 (353)
31 4fcg_A Uncharacterized protein 99.5 2.6E-14 9E-19 129.7 9.6 171 35-211 80-269 (328)
32 1z7x_W Ribonuclease inhibitor; 99.5 1.4E-14 4.8E-19 137.5 8.1 319 7-333 24-406 (461)
33 3j0a_A TOLL-like receptor 5; m 99.5 2.6E-14 8.8E-19 145.8 10.5 144 15-162 6-161 (844)
34 3oja_B Anopheles plasmodium-re 99.5 6E-14 2.1E-18 137.6 11.9 255 11-306 75-356 (597)
35 3ogk_B Coronatine-insensitive 99.5 1.2E-14 3.9E-19 142.4 6.3 195 11-210 164-421 (592)
36 1xku_A Decorin; proteoglycan, 99.5 3.5E-14 1.2E-18 128.9 8.6 277 18-332 36-326 (330)
37 1z7x_W Ribonuclease inhibitor; 99.5 9.2E-15 3.2E-19 138.7 4.8 305 18-332 8-377 (461)
38 3v47_A TOLL-like receptor 5B a 99.5 2E-15 6.8E-20 143.1 -0.3 144 17-163 14-168 (455)
39 3g06_A SSPH2 (leucine-rich rep 99.5 6.5E-14 2.2E-18 137.2 9.7 254 11-306 40-295 (622)
40 3zyi_A Leucine-rich repeat-con 99.5 8.3E-14 2.8E-18 132.0 9.7 181 18-205 59-252 (452)
41 1h6u_A Internalin H; cell adhe 99.5 1.9E-13 6.4E-18 122.9 11.1 184 11-205 41-227 (308)
42 2ft3_A Biglycan; proteoglycan, 99.5 3.4E-14 1.2E-18 129.1 6.2 276 18-332 38-327 (332)
43 3bz5_A Internalin-J, INLJ; leu 99.5 1.8E-13 6.2E-18 129.8 11.1 182 11-210 64-247 (457)
44 2ast_B S-phase kinase-associat 99.5 8.2E-15 2.8E-19 133.2 1.1 196 6-205 65-282 (336)
45 1jl5_A Outer protein YOPM; leu 99.5 6.1E-14 2.1E-18 132.9 7.1 167 21-205 99-287 (454)
46 1ziw_A TOLL-like receptor 3; i 99.5 5.9E-14 2E-18 139.8 7.3 164 17-184 8-181 (680)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.5E-13 5.3E-18 133.8 9.3 96 17-116 35-132 (562)
48 3zyj_A Leucine-rich repeat-con 99.4 1.5E-13 5E-18 129.8 8.8 185 18-211 48-246 (440)
49 1ziw_A TOLL-like receptor 3; i 99.4 7.6E-14 2.6E-18 138.9 6.7 105 81-185 327-441 (680)
50 3bz5_A Internalin-J, INLJ; leu 99.4 7.2E-13 2.5E-17 125.6 12.5 199 10-225 41-242 (457)
51 1ogq_A PGIP-2, polygalacturona 99.4 1.9E-13 6.6E-18 123.1 7.9 191 12-209 51-257 (313)
52 3vq2_A TLR4, TOLL-like recepto 99.4 9.1E-14 3.1E-18 136.5 5.9 174 32-210 281-462 (606)
53 3zyi_A Leucine-rich repeat-con 99.4 1.9E-13 6.6E-18 129.5 7.7 193 12-212 76-282 (452)
54 1ozn_A Reticulon 4 receptor; N 99.4 3.7E-13 1.3E-17 119.5 9.0 190 17-211 15-216 (285)
55 2z63_A TOLL-like receptor 4, v 99.4 7.8E-14 2.7E-18 135.8 5.0 247 27-306 273-529 (570)
56 2z66_A Variable lymphocyte rec 99.4 7.7E-14 2.6E-18 125.2 4.4 205 17-226 11-233 (306)
57 3o53_A Protein LRIM1, AGAP0063 99.4 2.7E-14 9.1E-19 129.0 1.1 224 35-273 33-270 (317)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.6E-12 5.5E-17 126.5 13.6 145 146-306 350-508 (562)
59 1ozn_A Reticulon 4 receptor; N 99.4 2.9E-13 9.9E-18 120.2 7.5 190 11-205 32-235 (285)
60 1xku_A Decorin; proteoglycan, 99.4 5.8E-13 2E-17 120.8 9.5 189 12-211 53-255 (330)
61 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.8E-17 117.9 11.1 183 33-225 38-226 (308)
62 2o6q_A Variable lymphocyte rec 99.4 5.1E-13 1.7E-17 117.7 8.3 183 17-205 20-215 (270)
63 1ogq_A PGIP-2, polygalacturona 99.4 4E-13 1.4E-17 121.1 7.2 191 11-205 76-278 (313)
64 2z80_A TOLL-like receptor 2, v 99.4 5.8E-13 2E-17 122.0 7.8 168 12-185 53-233 (353)
65 3oja_A Leucine-rich immune mol 99.4 2.4E-13 8.3E-18 130.0 5.5 233 26-272 20-269 (487)
66 3zyj_A Leucine-rich repeat-con 99.4 5.1E-13 1.7E-17 126.2 7.5 193 12-212 65-271 (440)
67 1jl5_A Outer protein YOPM; leu 99.4 3.6E-13 1.2E-17 127.6 6.6 177 11-205 71-267 (454)
68 2ca6_A RAN GTPase-activating p 99.3 1.4E-12 4.8E-17 120.9 8.7 93 24-116 20-133 (386)
69 2z66_A Variable lymphocyte rec 99.3 2.7E-13 9.3E-18 121.6 2.9 193 11-210 28-237 (306)
70 1h6t_A Internalin B; cell adhe 99.3 2.5E-12 8.4E-17 114.6 8.5 164 35-205 45-210 (291)
71 3g06_A SSPH2 (leucine-rich rep 99.3 1.3E-11 4.5E-16 120.9 13.8 132 11-161 61-193 (622)
72 3oja_A Leucine-rich immune mol 99.3 2.9E-12 1E-16 122.5 8.8 200 12-225 35-246 (487)
73 1h6t_A Internalin B; cell adhe 99.3 3.1E-12 1.1E-16 114.0 8.2 165 11-185 46-211 (291)
74 2z62_A TOLL-like receptor 4, v 99.3 1.6E-12 5.5E-17 114.8 6.0 188 18-212 12-216 (276)
75 2xwt_C Thyrotropin receptor; s 99.3 3.2E-12 1.1E-16 110.4 7.6 179 25-211 23-220 (239)
76 2xwt_C Thyrotropin receptor; s 99.3 4.3E-12 1.5E-16 109.6 8.3 188 12-207 32-238 (239)
77 1wwl_A Monocyte differentiatio 99.3 1.5E-12 5.1E-17 117.2 5.2 159 34-210 93-267 (312)
78 3rfs_A Internalin B, repeat mo 99.3 2.7E-12 9.1E-17 113.2 6.5 166 34-205 39-215 (272)
79 1p9a_G Platelet glycoprotein I 99.3 2.5E-12 8.5E-17 114.5 6.1 93 18-116 15-111 (290)
80 1wwl_A Monocyte differentiatio 99.3 6.3E-13 2.2E-17 119.7 2.1 188 10-205 94-306 (312)
81 3o53_A Protein LRIM1, AGAP0063 99.3 1.1E-12 3.9E-17 118.3 3.7 157 20-185 87-248 (317)
82 1m9s_A Internalin B; cell inva 99.3 4.2E-12 1.4E-16 124.2 7.7 158 21-185 51-208 (605)
83 2o6q_A Variable lymphocyte rec 99.3 6.4E-12 2.2E-16 110.6 8.1 170 11-185 37-216 (270)
84 4ezg_A Putative uncharacterize 99.3 4.3E-12 1.5E-16 106.3 6.6 145 33-184 41-191 (197)
85 3m19_A Variable lymphocyte rec 99.3 4.8E-12 1.6E-16 110.2 6.6 163 17-205 18-189 (251)
86 3rfs_A Internalin B, repeat mo 99.3 6.6E-12 2.3E-16 110.7 7.5 170 10-185 40-216 (272)
87 2ft3_A Biglycan; proteoglycan, 99.3 5.3E-12 1.8E-16 114.6 6.5 189 12-211 55-256 (332)
88 2z62_A TOLL-like receptor 4, v 99.2 3.2E-11 1.1E-15 106.4 10.9 188 12-205 29-234 (276)
89 2z63_A TOLL-like receptor 4, v 99.2 3.5E-12 1.2E-16 124.1 5.0 223 11-244 282-527 (570)
90 1xeu_A Internalin C; cellular 99.2 4.2E-12 1.4E-16 111.4 5.0 154 21-183 27-181 (263)
91 1m9s_A Internalin B; cell inva 99.2 1.1E-11 3.8E-16 121.1 8.5 166 33-205 40-207 (605)
92 4ezg_A Putative uncharacterize 99.2 1.4E-11 4.9E-16 103.1 7.1 145 53-205 39-191 (197)
93 2ca6_A RAN GTPase-activating p 99.2 9.5E-12 3.2E-16 115.3 6.4 196 11-210 32-288 (386)
94 3goz_A Leucine-rich repeat-con 99.2 1.5E-10 5.1E-15 106.3 14.1 97 19-116 4-120 (362)
95 1p9a_G Platelet glycoprotein I 99.2 2.6E-11 8.8E-16 107.9 7.7 174 32-212 6-188 (290)
96 4glp_A Monocyte differentiatio 99.2 1.7E-11 5.8E-16 110.1 5.4 82 35-116 90-180 (310)
97 2o6s_A Variable lymphocyte rec 99.1 5.9E-11 2E-15 100.1 7.4 163 17-191 11-182 (208)
98 4ay9_X Follicle-stimulating ho 99.1 8.2E-11 2.8E-15 107.5 5.9 190 18-212 14-218 (350)
99 3e6j_A Variable lymphocyte rec 99.1 2E-10 7E-15 98.4 8.0 141 18-184 24-169 (229)
100 4g8a_A TOLL-like receptor 4; l 99.1 9.7E-10 3.3E-14 108.0 13.9 142 17-183 35-182 (635)
101 3cvr_A Invasion plasmid antige 99.1 2.1E-10 7.2E-15 111.1 8.6 176 11-209 59-243 (571)
102 2v9t_B SLIT homolog 2 protein 99.1 1.4E-10 4.7E-15 98.8 6.2 143 17-184 15-162 (220)
103 2ell_A Acidic leucine-rich nuc 99.1 5.3E-10 1.8E-14 90.8 9.2 129 35-185 23-158 (168)
104 3goz_A Leucine-rich repeat-con 99.1 1.5E-10 5.3E-15 106.2 6.3 190 12-205 23-263 (362)
105 3m19_A Variable lymphocyte rec 99.0 3.4E-10 1.2E-14 98.3 7.8 148 12-184 36-189 (251)
106 2je0_A Acidic leucine-rich nuc 99.0 5.9E-10 2E-14 88.6 8.0 125 36-182 17-148 (149)
107 4glp_A Monocyte differentiatio 99.0 6.4E-10 2.2E-14 99.8 9.0 148 32-185 141-305 (310)
108 1xeu_A Internalin C; cellular 99.0 3.7E-10 1.3E-14 98.9 6.6 146 10-163 40-186 (263)
109 2v70_A SLIT-2, SLIT homolog 2 99.0 3.5E-10 1.2E-14 96.3 6.2 143 17-184 15-163 (220)
110 4g8a_A TOLL-like receptor 4; l 98.9 2.8E-09 9.6E-14 104.6 10.7 124 12-139 53-185 (635)
111 1a9n_A U2A', U2A'; complex (nu 98.9 1.3E-09 4.3E-14 89.4 6.6 132 31-185 14-151 (176)
112 4ay9_X Follicle-stimulating ho 98.9 1.7E-09 5.7E-14 98.8 7.8 194 11-211 30-239 (350)
113 3cvr_A Invasion plasmid antige 98.9 1.4E-09 4.6E-14 105.5 7.5 158 12-191 81-247 (571)
114 2o6s_A Variable lymphocyte rec 98.9 1.1E-09 3.6E-14 92.3 5.7 143 12-163 29-179 (208)
115 1ds9_A Outer arm dynein; leuci 98.9 5.6E-11 1.9E-15 99.5 -2.8 144 14-180 26-180 (198)
116 2je0_A Acidic leucine-rich nuc 98.9 8.7E-10 3E-14 87.7 4.1 126 56-203 15-148 (149)
117 2xot_A Amphoterin-induced prot 98.9 1.3E-09 4.5E-14 99.9 5.8 162 17-183 22-198 (361)
118 2v9t_B SLIT homolog 2 protein 98.9 3.6E-09 1.2E-13 90.0 7.8 127 12-162 33-165 (220)
119 2ell_A Acidic leucine-rich nuc 98.8 1.1E-09 3.9E-14 88.9 3.3 128 56-205 22-157 (168)
120 1dce_A Protein (RAB geranylger 98.8 3E-11 1E-15 117.3 -8.2 172 33-210 346-547 (567)
121 2v70_A SLIT-2, SLIT homolog 2 98.8 1.2E-08 4E-13 86.8 8.7 127 12-162 33-166 (220)
122 1w8a_A SLIT protein; signaling 98.8 8.1E-09 2.8E-13 85.8 7.2 122 17-162 12-139 (192)
123 3e6j_A Variable lymphocyte rec 98.8 1.1E-08 3.7E-13 87.6 8.0 128 11-162 40-172 (229)
124 2xot_A Amphoterin-induced prot 98.8 6.2E-09 2.1E-13 95.4 6.3 143 18-162 44-202 (361)
125 2wfh_A SLIT homolog 2 protein 98.8 1.7E-08 5.8E-13 83.9 8.2 122 17-162 14-139 (193)
126 1dce_A Protein (RAB geranylger 98.7 1.1E-08 3.6E-13 99.4 5.9 37 144-180 528-566 (567)
127 2o6r_A Variable lymphocyte rec 98.7 3.6E-08 1.2E-12 80.6 8.3 122 18-163 12-138 (177)
128 3e4g_A ATP synthase subunit S, 98.7 3E-08 1E-12 80.3 6.8 95 25-120 50-153 (176)
129 3un9_A NLR family member X1; l 98.6 3.3E-09 1.1E-13 97.6 -0.3 157 36-210 72-253 (372)
130 4b8c_D Glucose-repressible alc 98.6 8.9E-09 3E-13 103.0 2.4 108 53-163 219-330 (727)
131 1a9n_A U2A', U2A'; complex (nu 98.6 5.2E-08 1.8E-12 79.6 5.2 125 17-163 23-154 (176)
132 2wfh_A SLIT homolog 2 protein 98.5 1.6E-07 5.5E-12 78.0 7.8 102 11-116 31-137 (193)
133 3g39_A Variable lymphocyte rec 98.5 1.3E-07 4.5E-12 76.8 6.9 96 17-116 13-113 (170)
134 2r9u_A Variable lymphocyte rec 98.5 2.6E-07 9E-12 75.3 7.8 96 17-116 16-116 (174)
135 2ra8_A Uncharacterized protein 98.5 4.2E-07 1.4E-11 83.0 9.4 37 148-184 278-317 (362)
136 1w8a_A SLIT protein; signaling 98.5 2.2E-07 7.6E-12 77.0 6.3 101 12-116 30-137 (192)
137 2o6r_A Variable lymphocyte rec 98.4 7.3E-07 2.5E-11 72.7 7.2 102 11-116 28-135 (177)
138 4b8c_D Glucose-repressible alc 98.4 1.6E-07 5.5E-12 93.9 3.8 94 20-116 231-327 (727)
139 3e4g_A ATP synthase subunit S, 98.3 1.8E-07 6.3E-12 75.7 2.5 42 56-98 59-100 (176)
140 1ds9_A Outer arm dynein; leuci 98.3 7.4E-08 2.5E-12 80.3 -0.8 107 53-185 43-151 (198)
141 3un9_A NLR family member X1; l 98.3 4.3E-07 1.5E-11 83.4 4.2 151 57-226 71-249 (372)
142 2ra8_A Uncharacterized protein 98.3 1.1E-06 3.9E-11 80.1 6.5 152 56-210 137-321 (362)
143 3sb4_A Hypothetical leucine ri 98.1 1.8E-06 6E-11 77.9 4.9 142 35-182 100-305 (329)
144 2ifg_A High affinity nerve gro 98.1 2.7E-06 9.2E-11 77.1 5.9 96 18-116 13-114 (347)
145 3sb4_A Hypothetical leucine ri 98.1 1.9E-06 6.6E-11 77.6 4.3 54 148-204 225-283 (329)
146 3g39_A Variable lymphocyte rec 98.0 6.8E-06 2.3E-10 66.5 5.5 81 11-94 30-113 (170)
147 2r9u_A Variable lymphocyte rec 98.0 5.5E-06 1.9E-10 67.4 4.7 81 11-94 33-116 (174)
148 1io0_A Tropomodulin; LRR prote 97.8 1.7E-05 5.7E-10 65.2 4.6 38 147-184 119-161 (185)
149 4fdw_A Leucine rich hypothetic 97.6 7.3E-05 2.5E-09 69.2 6.4 172 25-202 146-330 (401)
150 2ifg_A High affinity nerve gro 97.3 0.00012 4.2E-09 66.1 3.8 76 18-95 36-115 (347)
151 4fdw_A Leucine rich hypothetic 97.3 0.00028 9.4E-09 65.3 6.2 149 24-182 167-331 (401)
152 1io0_A Tropomodulin; LRR prote 97.3 6.1E-05 2.1E-09 61.8 1.4 108 31-139 31-163 (185)
153 3rw6_A Nuclear RNA export fact 97.1 0.0004 1.4E-08 60.2 4.3 105 56-181 139-258 (267)
154 3rw6_A Nuclear RNA export fact 97.0 0.00051 1.7E-08 59.6 4.3 76 34-111 168-257 (267)
155 4gt6_A Cell surface protein; l 94.5 0.052 1.8E-06 49.6 6.1 60 52-113 259-319 (394)
156 3rfe_A Platelet glycoprotein I 93.8 0.082 2.8E-06 40.1 4.9 52 17-70 12-67 (130)
157 1pgv_A TMD-1, tropomodulin TMD 93.1 0.061 2.1E-06 44.0 3.4 34 149-182 98-134 (197)
158 4fs7_A Uncharacterized protein 92.9 0.048 1.6E-06 49.9 2.8 86 26-114 174-262 (394)
159 4fs7_A Uncharacterized protein 91.6 0.16 5.6E-06 46.3 4.7 148 30-182 224-374 (394)
160 1pgv_A TMD-1, tropomodulin TMD 91.0 0.1 3.5E-06 42.7 2.3 82 34-116 39-137 (197)
161 4gt6_A Cell surface protein; l 88.4 0.55 1.9E-05 42.7 5.4 125 33-160 262-389 (394)
162 4h09_A Hypothetical leucine ri 85.5 0.93 3.2E-05 40.8 5.2 77 33-113 191-271 (379)
163 4h09_A Hypothetical leucine ri 80.8 1.6 5.3E-05 39.3 4.7 122 32-181 213-340 (379)
164 3rfe_A Platelet glycoprotein I 62.8 5.5 0.00019 29.7 3.1 36 12-49 32-68 (130)
165 2agh_C Zinc finger protein HRX 32.5 27 0.00091 18.0 1.7 18 314-331 9-26 (31)
166 2lz0_A Uncharacterized protein 24.0 77 0.0026 22.1 3.6 34 34-67 18-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=3e-17 Score=149.19 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=150.5
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
.+|+.+++ +++....+|..++++++|++|+|++|.+.. |..+.++++|++|+|++|.++ .++..++.+++|++|+
T Consensus 81 ~~l~~L~L--~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALEL--RSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEE--ESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEE
T ss_pred cceeEEEc--cCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEE
Confidence 67777765 556667999999999999999999998776 778899999999999999875 3455678899999999
Q ss_pred eecCCCCCccCc-----------CCCCCccEEEecccCCC-cceeEeecceeeEEEEeecCCC-ceeeccccccccceee
Q 018344 90 INNCPGLKSLQL-----------LGLNKLKEIKLDSNRCG-LERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRL 156 (357)
Q Consensus 90 L~~c~~l~~l~l-----------~~~~~L~~L~l~~c~~~-l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L 156 (357)
+++|..+..++. .++++|++|++++|... ++.....+++|++|+++++.+. ....+..+++|+.|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 999887665532 23689999999998731 2222234778999999885432 1235778889999999
Q ss_pred cccccCHHHHHHHhccCCccceeeccccccccccccc---cccccEEEccccccccccc
Q 018344 157 DGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE 212 (357)
Q Consensus 157 ~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~ 212 (357)
++|.+.+. ++..+.++++|+.|++++|.....++.. .++|++|++++|..++.+.
T Consensus 237 s~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 237 RGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred cCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 98876543 3445678899999999888877766643 5788999999986555543
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=4.3e-17 Score=161.17 Aligned_cols=193 Identities=12% Similarity=0.131 Sum_probs=133.1
Q ss_pred cCcccc--cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc-cCHHHHHHHHcCC------CCccEEeeecCCCC
Q 018344 28 LPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGC------PLIEYININNCPGL 96 (357)
Q Consensus 28 lP~~i~--~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~------~~L~~L~L~~c~~l 96 (357)
+|..+. ++++|++|+|++|.+.. |..+.++++|++|++++|. ++...++.-++.+ ++|++|++++|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l- 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL- 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-
Confidence 999999 99999999999998655 7789999999999999998 7764456555554 9999999999874
Q ss_pred CccC----cCCCCCccEEEecccCCCccee--EeecceeeEEEEeecCCC-ceeecccccc-ccceeecccccCHHHHHH
Q 018344 97 KSLQ----LLGLNKLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEP-CEVNVSSCKN-LTHLRLDGLSITDKWLYN 168 (357)
Q Consensus 97 ~~l~----l~~~~~L~~L~l~~c~~~l~~~--~~~~p~L~~L~l~~~~~~-~~~~~~~~~~-L~~L~L~~~~i~~~~~~~ 168 (357)
+.++ +.++++|++|++++|.. ...+ ....++|++|+++++.+. ....+.++++ |++|++++|.++ .++.
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l-~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~ 394 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPN 394 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCC-EEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCS
T ss_pred CccCchhhhccCCCCCEEeCcCCcC-ccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccch
Confidence 3443 45678999999999872 2122 234678888888874322 1134667777 889999888875 2344
Q ss_pred HhccC--Cccceeecccccccccccc----------ccccccEEEccccccccccc---c-cCCCcceEEeee
Q 018344 169 QISEL--PFLEYLALHYCMKLRSINI----------SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFN 225 (357)
Q Consensus 169 l~~~~--~~L~~L~l~~~~~l~~l~~----------~~~~L~~L~l~~c~~L~~~~---i-~~~~L~~~~~~~ 225 (357)
.+... ++|+.|++++|.....++. ..++|+.|+++++ .++++. + ..++|+.+...+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCC
Confidence 44443 3788888876654332222 1346777888777 455433 1 134555555443
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=1.3e-16 Score=145.88 Aligned_cols=189 Identities=15% Similarity=0.210 Sum_probs=130.4
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
..++++++ +++....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+.. ++ .+..+++|++|++
T Consensus 44 ~~L~~L~l--~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVV--AGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEEC--CSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEEC
T ss_pred ccccEEEE--eCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEEC
Confidence 45666654 4555666764 77789999999999887762248889999999999997743 22 3678899999999
Q ss_pred ecCCCCCccCcCCCCCccEEEecccCCCccee--EeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHH
Q 018344 91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN 168 (357)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~ 168 (357)
++|..-..-.+..+++|++|++++|. ....+ ...+++|++|.+++........+..+++|++|++++|.+.+- +.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~ 194 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI--SP 194 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC--GG
T ss_pred cCCcccCchhhccCCceeEEECCCCC-CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc--cc
Confidence 98864322235567889999999886 33222 234678888888875443212367788899999988887542 11
Q ss_pred HhccCCccceeeccccccccccc-c-ccccccEEEcccccccccc
Q 018344 169 QISELPFLEYLALHYCMKLRSIN-I-SSPRLKELVFERCEELVEF 211 (357)
Q Consensus 169 l~~~~~~L~~L~l~~~~~l~~l~-~-~~~~L~~L~l~~c~~L~~~ 211 (357)
+..+++|+.|+++++. +..++ . ..++|++|++++| .++++
T Consensus 195 -~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n-~l~~~ 236 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNN-KITDL 236 (347)
T ss_dssp -GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred -ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCC-ccCCC
Confidence 6778888888886653 32222 2 2567888888887 45543
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=8.8e-17 Score=162.80 Aligned_cols=286 Identities=12% Similarity=0.071 Sum_probs=175.6
Q ss_pred cCcccc--cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc-cCHHHHHHHHc-------CCCCccEEeeecCCC
Q 018344 28 LPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVA-------GCPLIEYININNCPG 95 (357)
Q Consensus 28 lP~~i~--~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~-------~~~~L~~L~L~~c~~ 95 (357)
+|..+. ++++|++|+|++|.+.. |..+.++++|++|+|++|. ++...++.-++ .+++|++|++++|..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 999988 99999999999998655 7788999999999999998 77634454333 456999999999874
Q ss_pred CCccC----cCCCCCccEEEecccCCC-cceeEeecceeeEEEEeecCCC-ceeecccccc-ccceeecccccCHHHHHH
Q 018344 96 LKSLQ----LLGLNKLKEIKLDSNRCG-LERVYINGVNVHSVDIKVYLEP-CEVNVSSCKN-LTHLRLDGLSITDKWLYN 168 (357)
Q Consensus 96 l~~l~----l~~~~~L~~L~l~~c~~~-l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~-L~~L~L~~~~i~~~~~~~ 168 (357)
..++ +.++++|+.|++++|... ++ ....+++|+.|+++++.+. ....+.++++ |+.|++++|.++ .++.
T Consensus 561 -~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~ 636 (876)
T 4ecn_A 561 -EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPN 636 (876)
T ss_dssp -CBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCS
T ss_pred -CccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCch
Confidence 3443 456789999999999732 22 2234789999999885432 1235677888 999999999885 3444
Q ss_pred HhccCC--ccceeecccccccccccc--------ccccccEEEccccccccccc---c-cCCCcceEEeeeee----eeE
Q 018344 169 QISELP--FLEYLALHYCMKLRSINI--------SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV----ESF 230 (357)
Q Consensus 169 l~~~~~--~L~~L~l~~~~~l~~l~~--------~~~~L~~L~l~~c~~L~~~~---i-~~~~L~~~~~~~~~----~~~ 230 (357)
.+...+ +|+.|++++|.....++. ..++|+.|++++| .++.+. + ..++|+.+...+.. |..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 444443 488999876654332221 1247888888877 555443 1 33556655554432 111
Q ss_pred eccc--------ccceeEEEEEEecCCChHHHHHHHHHHh--hcccccceeEEeeccccceecccccccCCCCCCCcceE
Q 018344 231 SSNA--------LALSQTLLCFISHPVDNEWYLKFIKLLA--RFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHV 300 (357)
Q Consensus 231 ~~~~--------~~L~~~~l~~~~~~~~~~~~~~l~~~l~--~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L 300 (357)
.... ..|+.++++.+.... +...+. .+++|+.|.+..+.... +|..+. .+++|+.|
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~-------lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~-----~L~~L~~L 781 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTS-------LSDDFRATTLPYLSNMDVSYNCFSS--FPTQPL-----NSSQLKAF 781 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCC-------CCGGGSTTTCTTCCEEECCSSCCSS--CCCGGG-----GCTTCCEE
T ss_pred HhccccccccccCCccEEECCCCCCcc-------chHHhhhccCCCcCEEEeCCCCCCc--cchhhh-----cCCCCCEE
Confidence 1111 156666664322111 122232 66777777775543332 444333 24667777
Q ss_pred EEEEeccchhhhHHHHHHHHhhhCCCCCeeEe
Q 018344 301 SFSVLSEILEVSLANLVDCLLWITPHAETLSI 332 (357)
Q Consensus 301 ~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l 332 (357)
.+..+++.........++.-+..+|+|++|.+
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 77542100000111122333456777777777
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.63 E-value=1.2e-15 Score=139.57 Aligned_cols=271 Identities=13% Similarity=0.083 Sum_probs=182.2
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
+.++.++ ++++....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+... +. +..+++|++|++
T Consensus 66 ~~L~~L~--l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLN--LNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEE--CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCEEEC
T ss_pred CCccEEE--ccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCceeEEEC
Confidence 4566665 46666777777 778999999999999887754788999999999999987432 22 678999999999
Q ss_pred ecCCCCCcc-CcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHH
Q 018344 91 NNCPGLKSL-QLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN 168 (357)
Q Consensus 91 ~~c~~l~~l-~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~ 168 (357)
++|..+..+ .+..+++|++|++++|.. .... ...+++|++|+++++.+.....+..+++|+.++++++.+++...
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 216 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-- 216 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--
Confidence 999765544 345668999999999873 1111 23578999999988654322236788899999999998865322
Q ss_pred HhccCCccceeecccccccccccc--ccccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEEEEEe
Q 018344 169 QISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFIS 246 (357)
Q Consensus 169 l~~~~~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 246 (357)
+..+++|+.|++++|. +..++. ..++|++|++++| .++++.. + .....++.++++.+.
T Consensus 217 -~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~----~-------------~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTN-QISDINA----V-------------KDLTKLKMLNVGSNQ 276 (347)
T ss_dssp -GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG----G-------------TTCTTCCEEECCSSC
T ss_pred -hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCC-ccCCChh----H-------------hcCCCcCEEEccCCc
Confidence 7889999999997764 333332 2578999999988 5555320 0 011233334332211
Q ss_pred cCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCC
Q 018344 247 HPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPH 326 (357)
Q Consensus 247 ~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~ 326 (357)
.... +.+..+++++.|.+..+..... .++.+. .+++|++|.+.+++ . .. +.+ +..+|+
T Consensus 277 l~~~--------~~~~~l~~L~~L~L~~n~l~~~-~~~~l~-----~l~~L~~L~L~~n~-l--~~---~~~--~~~l~~ 334 (347)
T 4fmz_A 277 ISDI--------SVLNNLSQLNSLFLNNNQLGNE-DMEVIG-----GLTNLTTLFLSQNH-I--TD---IRP--LASLSK 334 (347)
T ss_dssp CCCC--------GGGGGCTTCSEEECCSSCCCGG-GHHHHH-----TCTTCSEEECCSSS-C--CC---CGG--GGGCTT
T ss_pred cCCC--------hhhcCCCCCCEEECcCCcCCCc-ChhHhh-----ccccCCEEEccCCc-c--cc---ccC--hhhhhc
Confidence 1111 2356778888888876543221 122222 35788999998653 1 11 112 677889
Q ss_pred CCeeEe
Q 018344 327 AETLSI 332 (357)
Q Consensus 327 le~L~l 332 (357)
|++|.+
T Consensus 335 L~~L~l 340 (347)
T 4fmz_A 335 MDSADF 340 (347)
T ss_dssp CSEESS
T ss_pred cceeeh
Confidence 999888
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.63 E-value=3.8e-16 Score=157.70 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=120.5
Q ss_pred ccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEE
Q 018344 33 FYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK 111 (357)
Q Consensus 33 ~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~ 111 (357)
..+++|++|++++|.+.. ++.+.++++|++|++++|.++.. ++..+..+++|++|++++|......+...+++|++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 567888888888887765 33478889999999998877533 3555778899999999888754344444668899999
Q ss_pred ecccCCCccee---Eee-cceeeEEEEeecCCC--ceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344 112 LDSNRCGLERV---YIN-GVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM 185 (357)
Q Consensus 112 l~~c~~~l~~~---~~~-~p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 185 (357)
+++|. ....+ ... +++|++|+++++.+. ....++++++|++|++++|.+++......+.++++|+.|++++|.
T Consensus 276 L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 276 LAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 98886 22111 112 488999999874321 124577888999999999988654344457889999999998775
Q ss_pred cccccccc----cccccEEEcccc
Q 018344 186 KLRSINIS----SPRLKELVFERC 205 (357)
Q Consensus 186 ~l~~l~~~----~~~L~~L~l~~c 205 (357)
....++.. .++|+.|+++++
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSS
T ss_pred cCccccHHHHhhhcCCcEEEccCC
Confidence 44344433 237888888777
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=1.5e-15 Score=144.68 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=113.8
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
..++.+++ .+.....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+... .. +.++++|++|++
T Consensus 46 ~~l~~L~l--~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQA--DRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEEC--CSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEEC
T ss_pred ccccEEec--CCCCCccCcc-hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccC--hh-hcCCCCCCEEEC
Confidence 45666654 4555667774 677899999999999877622388999999999999987432 22 778999999999
Q ss_pred ecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344 91 NNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (357)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l 169 (357)
++|..-....+..+++|++|++++|.. .... ...+++|++|.+.+..... ..+.++++|+.|+++++.+++- ..
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~---~~ 194 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISSNKVSDI---SV 194 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCC-GGGTTCTTCCEEECCSSCCCCC---GG
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCc-hhhccCCCCCEEECcCCcCCCC---hh
Confidence 988632222356678999999988862 1111 1235666777665421111 1355566666666666665431 12
Q ss_pred hccCCccceeecccccccccccc-ccccccEEEcccc
Q 018344 170 ISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERC 205 (357)
Q Consensus 170 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c 205 (357)
+..+++|+.|++++|......+. ..++|++|++++|
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 231 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCC
Confidence 45566666666654432211111 1345555555554
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=7e-16 Score=151.06 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=68.0
Q ss_pred CCCCCceEEeeccccC---HHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccEEEecccCCCc--c---eeEee
Q 018344 56 TLFSLRKLCLSFVHVD---DEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGL--E---RVYIN 125 (357)
Q Consensus 56 ~l~~L~~L~L~~~~~~---~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l--~---~~~~~ 125 (357)
++++|++|+++++.++ ...++.++.+|++|++|++++|.. ..+ .+.++++|++|+++.+.... . .....
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4455555555555442 344455555555555555555431 110 01122444444444221000 0 00112
Q ss_pred cceeeEEEEeecCC-CceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccccccc---cccccccEEE
Q 018344 126 GVNVHSVDIKVYLE-PCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN---ISSPRLKELV 201 (357)
Q Consensus 126 ~p~L~~L~l~~~~~-~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~---~~~~~L~~L~ 201 (357)
+++|+++.+.+... .....+..+++|++|+++++.+++..+...+.++++|+.|+++.+..-..++ ..+++|++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 33444444433111 0112344566777777777776666665666777777777775221111111 1245666776
Q ss_pred ccc
Q 018344 202 FER 204 (357)
Q Consensus 202 l~~ 204 (357)
+++
T Consensus 349 L~~ 351 (592)
T 3ogk_B 349 IER 351 (592)
T ss_dssp EEC
T ss_pred eec
Confidence 664
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.61 E-value=1.5e-16 Score=160.65 Aligned_cols=177 Identities=17% Similarity=0.069 Sum_probs=100.6
Q ss_pred ecCcccccCCCccEEEeeccccCC--CC--CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--C
Q 018344 27 NLPQIVFYLKSIYVLDFEFCKLEP--PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--Q 100 (357)
Q Consensus 27 ~lP~~i~~~~~L~~L~Ls~~~~~~--p~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~ 100 (357)
.+|..+.++++|++|+|++|.+.. |. .+.++++|++|+|++|.+.......+..++++|++|++++|..-... .
T Consensus 91 ~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 344555566666666666665543 33 45566666666666665421111111245566666666665421111 0
Q ss_pred ---cCCCCCccEEEecccCCCcceeE-eecceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccCCc
Q 018344 101 ---LLGLNKLKEIKLDSNRCGLERVY-INGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPF 175 (357)
Q Consensus 101 ---l~~~~~L~~L~l~~c~~~l~~~~-~~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 175 (357)
+.++++|++|++++|. ...... ..+++|++|+++++.... ...++++++|++|++++|.+++. ++..+.++++
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~ 248 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTE 248 (768)
T ss_dssp HHHTTCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSS
T ss_pred hhhhccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCC
Confidence 3445667777776665 211111 346778888887743321 12367788888888888887543 4556788888
Q ss_pred cceeeccccccccccccc-cccccEEEcccc
Q 018344 176 LEYLALHYCMKLRSINIS-SPRLKELVFERC 205 (357)
Q Consensus 176 L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c 205 (357)
|+.|++++|.....++.. .++|++|++++|
T Consensus 249 L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAEN 279 (768)
T ss_dssp CCEEECCSSCCEESCCCCCCTTCCEEECCSS
T ss_pred CCEEECCCCcccCccCccccCCCCEEECcCC
Confidence 888888776544333322 456777777666
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=149.64 Aligned_cols=185 Identities=17% Similarity=0.141 Sum_probs=102.0
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
++........+|..+. +++++|+|++|.+.. +..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.
T Consensus 16 v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 16 VLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNR- 91 (477)
T ss_dssp EECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred EEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCc-
Confidence 4444555566666543 467777777766554 34566777777777777755321 12234566777777777664
Q ss_pred CCccC---cCCCCCccEEEecccCCCcce---eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344 96 LKSLQ---LLGLNKLKEIKLDSNRCGLER---VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY 167 (357)
Q Consensus 96 l~~l~---l~~~~~L~~L~l~~c~~~l~~---~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~ 167 (357)
++.+. +.++++|++|++++|.. ... ....+++|++|+++++.+.. ...+.++++|++|++++|.+++ ...
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~ 169 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPT 169 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCH
T ss_pred CCccCcccccCCCCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cCh
Confidence 33332 33456777777776652 111 11235667777776643321 1245566677777777766643 123
Q ss_pred HHhccCCccceeecccccccccccc----ccccccEEEcccccccc
Q 018344 168 NQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELV 209 (357)
Q Consensus 168 ~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~ 209 (357)
..+.++++|+.|+++++. +..++. ..++|++|++++|..+.
T Consensus 170 ~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp HHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred hHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCcccc
Confidence 345666777777775443 222211 13556666666654443
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=2.7e-15 Score=142.88 Aligned_cols=288 Identities=15% Similarity=0.106 Sum_probs=152.7
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
+.++.++ ++++....+|+ +.++++|++|++++|.+.....+.++++|++|++++|.+... +. +..+++|++|++
T Consensus 68 ~~L~~L~--Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQIN--FSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEE--CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEE
T ss_pred cCCCEEE--CCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEEEC
Confidence 3455554 56666677776 778889999999888776622378888899999888877332 22 677888888888
Q ss_pred ecCCCCCccCcCC---------------------CCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccc
Q 018344 91 NNCPGLKSLQLLG---------------------LNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCK 149 (357)
Q Consensus 91 ~~c~~l~~l~l~~---------------------~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~ 149 (357)
++|..-..-.+.+ +++|++|++++|...-......+++|++|+++++.......++.++
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~ 221 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 221 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCT
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccC
Confidence 8775211112223 3445555555544110011112455666665553322111244455
Q ss_pred cccceeecccccCHHHHHHHhccCCccceeecccccccccccc-ccccccEEEccccccccccc--ccCCCcceEEeeee
Q 018344 150 NLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNY 226 (357)
Q Consensus 150 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~~~L~~~~~~~~ 226 (357)
+|+.|+++++.+++- ..+..+++|+.|++++|......+. ..++|++|++++| .++.+. -..++|+.+...+.
T Consensus 222 ~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 222 NLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNEN 297 (466)
T ss_dssp TCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSS
T ss_pred CCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCC
Confidence 666666666655431 1245566666666654432211111 1456666666666 343322 12234444443332
Q ss_pred e--eeE-ecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEE
Q 018344 227 V--ESF-SSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFS 303 (357)
Q Consensus 227 ~--~~~-~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~ 303 (357)
. ... ......|+.++++.+...... . +..+++++.|.+..+.... ++ ....+++|+.|++.
T Consensus 298 ~l~~~~~~~~l~~L~~L~L~~n~l~~~~-------~-~~~l~~L~~L~l~~n~l~~--~~------~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 298 QLEDISPISNLKNLTYLTLYFNNISDIS-------P-VSSLTKLQRLFFYNNKVSD--VS------SLANLTNINWLSAG 361 (466)
T ss_dssp CCSCCGGGGGCTTCSEEECCSSCCSCCG-------G-GGGCTTCCEEECCSSCCCC--CG------GGTTCTTCCEEECC
T ss_pred cccCchhhcCCCCCCEEECcCCcCCCch-------h-hccCccCCEeECCCCccCC--ch------hhccCCCCCEEeCC
Confidence 2 000 112345666655432211111 1 4567777777775543221 11 12245778888887
Q ss_pred EeccchhhhHHHHHHHHhhhCCCCCeeEe
Q 018344 304 VLSEILEVSLANLVDCLLWITPHAETLSI 332 (357)
Q Consensus 304 ~~~~~~~~~~~~~l~~Ll~~~p~le~L~l 332 (357)
.+. . .. ..+ +..+|+|+.|.+
T Consensus 362 ~n~-l--~~---~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 362 HNQ-I--SD---LTP--LANLTRITQLGL 382 (466)
T ss_dssp SSC-C--CB---CGG--GTTCTTCCEEEC
T ss_pred CCc-c--Cc---cch--hhcCCCCCEEec
Confidence 553 1 11 122 678889998888
No 12
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=2.2e-15 Score=147.48 Aligned_cols=284 Identities=16% Similarity=0.200 Sum_probs=150.4
Q ss_pred cCCCccEEEeeccccCC--CC----CccCCCCCceEEeeccc--cCHHHHHHHHcCCCCccEEeeecCCC----------
Q 018344 34 YLKSIYVLDFEFCKLEP--PR----STVTLFSLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNCPG---------- 95 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~--p~----~~~~l~~L~~L~L~~~~--~~~~~l~~l~~~~~~L~~L~L~~c~~---------- 95 (357)
+|++|++|++++|.+.. +. ....+++|++|+++++. ++...+..+..++++|++|++++|..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 56677777777765433 11 22356788888888775 56677777777788888888887732
Q ss_pred ---CCccCcC-------------------------------------------CCCCccEEEecccCCCc---ceeEeec
Q 018344 96 ---LKSLQLL-------------------------------------------GLNKLKEIKLDSNRCGL---ERVYING 126 (357)
Q Consensus 96 ---l~~l~l~-------------------------------------------~~~~L~~L~l~~c~~~l---~~~~~~~ 126 (357)
++.+.+. .+++|++|++++|...- ..+.-.+
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 2222100 12445555555444110 0011134
Q ss_pred ceeeEEEEeecCCC--ceeeccccccccceee---------cccccCHHHHHHHhccCCccceeeccccccccccc----
Q 018344 127 VNVHSVDIKVYLEP--CEVNVSSCKNLTHLRL---------DGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN---- 191 (357)
Q Consensus 127 p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L---------~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~---- 191 (357)
|+|++|.+.+.... .......+++|++|++ ..+.+++..+..+..++++|+.|.+ +|+.+....
T Consensus 314 ~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l 392 (594)
T 2p1m_B 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITI 392 (594)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHH
T ss_pred CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHH
Confidence 55555555543110 0001123555666655 2234555545555555666666644 343332211
Q ss_pred -cccccccEEEcc-----ccccccccc---------ccCCCcceEEeeeeee-----eEecccccceeEEEEEEecCCCh
Q 018344 192 -ISSPRLKELVFE-----RCEELVEFE---------LDTPNLSIFKCFNYVE-----SFSSNALALSQTLLCFISHPVDN 251 (357)
Q Consensus 192 -~~~~~L~~L~l~-----~c~~L~~~~---------i~~~~L~~~~~~~~~~-----~~~~~~~~L~~~~l~~~~~~~~~ 251 (357)
...++|++|+++ +|.++++.. -..++|+.+...+... ........|+.+++..+... .
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~--~ 470 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS--D 470 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSS--H
T ss_pred HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCc--H
Confidence 125677777777 555666221 1235666666654220 00012456777777543221 1
Q ss_pred HHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeE
Q 018344 252 EWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLS 331 (357)
Q Consensus 252 ~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~ 331 (357)
..+..+..++++|+.|.+..+.......... ...+++|++|++.+++ . ..+.+..+...+|+++...
T Consensus 471 ---~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~-----~~~l~~L~~L~l~~~~-~----~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 471 ---LGMHHVLSGCDSLRKLEIRDCPFGDKALLAN-----ASKLETMRSLWMSSCS-V----SFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp ---HHHHHHHHHCTTCCEEEEESCSCCHHHHHHT-----GGGGGGSSEEEEESSC-C----BHHHHHHHHHHCTTEEEEE
T ss_pred ---HHHHHHHhcCCCcCEEECcCCCCcHHHHHHH-----HHhCCCCCEEeeeCCC-C----CHHHHHHHHHhCCCCEEEE
Confidence 2344556778999999988776532222111 1235789999998775 2 1234455667889987766
Q ss_pred ee
Q 018344 332 IE 333 (357)
Q Consensus 332 l~ 333 (357)
+.
T Consensus 538 ~~ 539 (594)
T 2p1m_B 538 ID 539 (594)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.9e-15 Score=152.98 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=108.2
Q ss_pred CCCccCCCCCceEEeeccccCHH----------------HHHHHHc--CCCCccEEeeecCCCCCccC--cCCCCCccEE
Q 018344 51 PRSTVTLFSLRKLCLSFVHVDDE----------------VIRDMVA--GCPLIEYININNCPGLKSLQ--LLGLNKLKEI 110 (357)
Q Consensus 51 p~~~~~l~~L~~L~L~~~~~~~~----------------~l~~l~~--~~~~L~~L~L~~c~~l~~l~--l~~~~~L~~L 110 (357)
|..+.++++|++|+|++|.++.+ .++..++ ++++|++|+|++|.....++ +.++++|+.|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 34567889999999999988652 2455555 89999999999987554443 4567899999
Q ss_pred EecccC-CC---cce-e------EeecceeeEEEEeecCCC-cee--eccccccccceeecccccCHHHHHHHhccCCcc
Q 018344 111 KLDSNR-CG---LER-V------YINGVNVHSVDIKVYLEP-CEV--NVSSCKNLTHLRLDGLSITDKWLYNQISELPFL 176 (357)
Q Consensus 111 ~l~~c~-~~---l~~-~------~~~~p~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 176 (357)
++++|. .. ++. + ....|+|++|+++++.+. ... .++++++|+.|++++|.++ .++ .+.++++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcc
Confidence 999886 21 111 1 112458999999885433 123 5778888999999988885 344 67788889
Q ss_pred ceeeccccccccccccc---ccc-ccEEEcccccccccc
Q 018344 177 EYLALHYCMKLRSINIS---SPR-LKELVFERCEELVEF 211 (357)
Q Consensus 177 ~~L~l~~~~~l~~l~~~---~~~-L~~L~l~~c~~L~~~ 211 (357)
+.|++++|. +..++.. .++ |+.|+++++ .++.+
T Consensus 598 ~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~L~~l 634 (876)
T 4ecn_A 598 TDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYI 634 (876)
T ss_dssp SEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-CCCSC
T ss_pred eEEECcCCc-cccchHHHhhccccCCEEECcCC-CCCcC
Confidence 999987654 3355532 455 888888887 45543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.58 E-value=4.6e-16 Score=153.78 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=107.8
Q ss_pred CCCccCCCCCceEEeeccccCHH----------------HHHHHHc--CCCCccEEeeecCCCCCcc--CcCCCCCccEE
Q 018344 51 PRSTVTLFSLRKLCLSFVHVDDE----------------VIRDMVA--GCPLIEYININNCPGLKSL--QLLGLNKLKEI 110 (357)
Q Consensus 51 p~~~~~l~~L~~L~L~~~~~~~~----------------~l~~l~~--~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L 110 (357)
|..+.++++|++|+|++|.++.. .++..++ ++++|++|++++|.....+ .+.++++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 44577899999999999988652 1455566 8999999999999754443 35567899999
Q ss_pred EecccCCCcce--e--Ee-------ecceeeEEEEeecCCC-cee--eccccccccceeecccccCHHHHHHHhccCCcc
Q 018344 111 KLDSNRCGLER--V--YI-------NGVNVHSVDIKVYLEP-CEV--NVSSCKNLTHLRLDGLSITDKWLYNQISELPFL 176 (357)
Q Consensus 111 ~l~~c~~~l~~--~--~~-------~~p~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 176 (357)
++++|. .+.. + .+ .+++|++|+++++.+. ... .++++++|+.|++++|.+++. ++ .+..+++|
T Consensus 279 ~Ls~n~-~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~~~l~~L 355 (636)
T 4eco_A 279 NVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LP-AFGSEIKL 355 (636)
T ss_dssp ECTTCT-TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE-CC-CCEEEEEE
T ss_pred ECcCCC-CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc-hh-hhCCCCCC
Confidence 999986 2221 1 11 1378999999885432 123 577888899999988887532 33 56777888
Q ss_pred ceeeccccccccccccc---ccc-ccEEEcccccccccc
Q 018344 177 EYLALHYCMKLRSINIS---SPR-LKELVFERCEELVEF 211 (357)
Q Consensus 177 ~~L~l~~~~~l~~l~~~---~~~-L~~L~l~~c~~L~~~ 211 (357)
+.|+++++. +..++.. .++ |++|+++++ .++++
T Consensus 356 ~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~l~~l 392 (636)
T 4eco_A 356 ASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN-KLKYI 392 (636)
T ss_dssp SEEECCSSE-EEECCTTSEEECTTCCEEECCSS-CCSSC
T ss_pred CEEECCCCc-cccccHhhhhhcccCcEEEccCC-cCccc
Confidence 888886554 3344432 345 888888877 45543
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.58 E-value=7e-16 Score=149.76 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCeEEEEEecCCcceec-CcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.+++++ ++++....+ |..+.++++|++|++++|.+.. |..+.++++|++|+|++|.++.. .+..++++++|++|
T Consensus 27 ~L~~L~--Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLD--LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEE--CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred CccEEE--CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence 344444 455545555 3456667777777777776655 34566777777777777766322 12335566677777
Q ss_pred eeecCC
Q 018344 89 NINNCP 94 (357)
Q Consensus 89 ~L~~c~ 94 (357)
++++|.
T Consensus 104 ~Ls~n~ 109 (549)
T 2z81_A 104 NLMGNP 109 (549)
T ss_dssp ECTTCC
T ss_pred ECCCCc
Confidence 776654
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.57 E-value=1.1e-15 Score=150.21 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=37.4
Q ss_pred cCCcceec-CcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 21 GCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 21 ~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
+++....+ |..+.++++|++|++++|.+.. +..+.++++|++|++++|.+....++..++++++|++|++++|.
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 33334444 4444455555555555554433 23455555555555555554322233345556666666666553
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.57 E-value=4.6e-14 Score=136.93 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=93.2
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
.|.+......+|..+. ++|++|++++|.+.. |..+.++++|++|+|++|.++.. .+..++++++|++|++++|..
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCcc
Confidence 3556667788998765 689999999998765 55788999999999999987432 123467899999999999863
Q ss_pred CCccC---cCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecC-CCc--eeeccccccccceeecccccC
Q 018344 96 LKSLQ---LLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYL-EPC--EVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 96 l~~l~---l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~-~~~--~~~~~~~~~L~~L~L~~~~i~ 162 (357)
+.+. +.++++|++|++++|... .......+++|++|++++.. ... ...+.++++|++|+++++.++
T Consensus 87 -~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 87 -SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp -CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred -CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 3322 456678888888877621 11112235566667666643 110 123445555666666555543
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=4.2e-15 Score=151.55 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=45.1
Q ss_pred EecCCcceec-CcccccCCCccEEEeeccccCC--CC--CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 19 DVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 19 ~~~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~--p~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
+++++....+ |..+.++++|++|+|++|.+.. |. .+.++++|++|+|++|.+........++++++|++|++++|
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 3444444444 5556667777777777766543 22 26667777777777776633222234566777777777765
Q ss_pred C
Q 018344 94 P 94 (357)
Q Consensus 94 ~ 94 (357)
.
T Consensus 159 ~ 159 (844)
T 3j0a_A 159 Q 159 (844)
T ss_dssp C
T ss_pred c
Confidence 3
No 19
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=6.7e-15 Score=133.81 Aligned_cols=202 Identities=15% Similarity=0.239 Sum_probs=149.5
Q ss_pred hHHHHHHhCC-CeEEEEEecCCcceecCcccccC--CCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHH
Q 018344 3 RCLSYAFASN-VKELKLDVGCCRIYNLPQIVFYL--KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDM 78 (357)
Q Consensus 3 ~~i~~~~~~~-v~~l~l~~~~~~~~~lP~~i~~~--~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l 78 (357)
+|-..+.... ++.++ ++.+... |..+..+ ++++.|+++++.+.. +.....+++|++|++++|.+++..++..
T Consensus 38 ~W~~~~~~~~~~~~l~--l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 38 RWYRLASDESLWQTLD--LTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp HHHHHHTCSTTSSEEE--CTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred HHHHHhcCchhheeec--cccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 5766665433 55554 4554322 4555555 899999999988766 4456789999999999999888778888
Q ss_pred HcCCCCccEEeeecCCCCCcc---CcCCCCCccEEEecccCCCcc-----eeEeecceeeEEEEeec-CCCc---eeecc
Q 018344 79 VAGCPLIEYININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLE-----RVYINGVNVHSVDIKVY-LEPC---EVNVS 146 (357)
Q Consensus 79 ~~~~~~L~~L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~-----~~~~~~p~L~~L~l~~~-~~~~---~~~~~ 146 (357)
+..+++|++|++++|. +... .+..+++|++|++++|. .+. .....+|+|++|+++++ .+.. ...+.
T Consensus 114 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCB-SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCC-CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 9999999999999985 3321 24457899999999995 332 22335789999999886 5441 23356
Q ss_pred ccc-cccceeeccc--ccCHHHHHHHhccCCccceeeccccccccc--ccc--ccccccEEEccccccccc
Q 018344 147 SCK-NLTHLRLDGL--SITDKWLYNQISELPFLEYLALHYCMKLRS--INI--SSPRLKELVFERCEELVE 210 (357)
Q Consensus 147 ~~~-~L~~L~L~~~--~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~--l~~--~~~~L~~L~l~~c~~L~~ 210 (357)
.++ +|++|+++++ .+++..++..+.++++|+.|++++|..+.. ++. ..++|++|++++|..+++
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 788 9999999998 677777888889999999999998875422 221 258899999999975554
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=9.3e-15 Score=138.48 Aligned_cols=299 Identities=13% Similarity=0.076 Sum_probs=143.3
Q ss_pred CCeEEEEEecCCcceec-CcccccCCCccEEEeeccccCC---CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 12 NVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
.++.++ ++++....+ |..+.++++|++|++++|.+.. +..+.++++|++|+|++|.+... .+..++++++|++
T Consensus 31 ~l~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 107 (455)
T 3v47_A 31 HVNYVD--LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEV 107 (455)
T ss_dssp TCCEEE--CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCE
T ss_pred ccCEEE--ecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCE
Confidence 344444 344444444 4455667777777777765432 33566667777777776655321 1223455666666
Q ss_pred EeeecCCCCCc-c---CcCCCCCccEEEecccCC-Cccee--EeecceeeEEEEeecCCCc--eee--------------
Q 018344 88 ININNCPGLKS-L---QLLGLNKLKEIKLDSNRC-GLERV--YINGVNVHSVDIKVYLEPC--EVN-------------- 144 (357)
Q Consensus 88 L~L~~c~~l~~-l---~l~~~~~L~~L~l~~c~~-~l~~~--~~~~p~L~~L~l~~~~~~~--~~~-------------- 144 (357)
|++++|..-.. . .+..+++|++|++++|.. ..... ...+++|++|+++++.+.. ...
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 66666643111 1 133445666666666652 11111 1234556666555422110 000
Q ss_pred --------------------ccccccccceeecccccCHHHHHHHhc--cCCccceeeccccccccc---------cc--
Q 018344 145 --------------------VSSCKNLTHLRLDGLSITDKWLYNQIS--ELPFLEYLALHYCMKLRS---------IN-- 191 (357)
Q Consensus 145 --------------------~~~~~~L~~L~L~~~~i~~~~~~~l~~--~~~~L~~L~l~~~~~l~~---------l~-- 191 (357)
+..+++|++|++++|.+++.....+.. ..++|+.|+++++..... ..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 123356888888888776643333222 135666666654422210 00
Q ss_pred ----cccccccEEEccccccccccc----ccCCCcceEEeeeee-eeE----ecccccceeEEEEEEecCCChHHHHHHH
Q 018344 192 ----ISSPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV-ESF----SSNALALSQTLLCFISHPVDNEWYLKFI 258 (357)
Q Consensus 192 ----~~~~~L~~L~l~~c~~L~~~~----i~~~~L~~~~~~~~~-~~~----~~~~~~L~~~~l~~~~~~~~~~~~~~l~ 258 (357)
...++|+.|+++++ .++++. -..++|+.+...+.. ... ......|+.++++.+..... ..
T Consensus 268 ~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~ 340 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI------DS 340 (455)
T ss_dssp TTGGGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CG
T ss_pred ccccccccCceEEEecCc-cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc------Ch
Confidence 01245667776666 333321 122344444443322 101 11234566665533211110 02
Q ss_pred HHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEe
Q 018344 259 KLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI 332 (357)
Q Consensus 259 ~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l 332 (357)
..+.++++++.|.+..+... ...+..+ ..+++|++|++..+. +..+.+..+..+|+|++|.+
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~-~~~~~~~-----~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIR-ALGDQSF-----LGLPNLKELALDTNQ------LKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCC-EECTTTT-----TTCTTCCEEECCSSC------CSCCCTTTTTTCTTCCEEEC
T ss_pred hHhcCcccCCEEECCCCccc-ccChhhc-----cccccccEEECCCCc------cccCCHhHhccCCcccEEEc
Confidence 33566777777777554322 1112221 235677777776542 11122334566777887777
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.56 E-value=8.4e-16 Score=151.03 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=45.6
Q ss_pred ceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc----ccccccEEE
Q 018344 127 VNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELV 201 (357)
Q Consensus 127 p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~ 201 (357)
++|++|++++..+. ....+.++++|++|++++|.+++. .+..+.++++|+.|++++|.....++. ..++|++|+
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 45666666553221 113456778888888888877532 234466777888888776643323322 145666666
Q ss_pred cccc
Q 018344 202 FERC 205 (357)
Q Consensus 202 l~~c 205 (357)
++++
T Consensus 357 l~~n 360 (606)
T 3t6q_A 357 LSHD 360 (606)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6665
No 22
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=4.2e-15 Score=145.58 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=107.5
Q ss_pred cCCCccEEEeeccccCC--CCCcc-CCCCCceEEeecc-ccCHHHHHHHHcCCCCccEEeeecCCCCCc-----cC--cC
Q 018344 34 YLKSIYVLDFEFCKLEP--PRSTV-TLFSLRKLCLSFV-HVDDEVIRDMVAGCPLIEYININNCPGLKS-----LQ--LL 102 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~--p~~~~-~l~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~-----l~--l~ 102 (357)
.+++|++|+|++|.+.. +..+. .+++|++|+|++| .++...++.+..+|++|++|++++|. ++. +. ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence 57789999998887554 22333 6889999999888 45777778888888999999998875 111 10 11
Q ss_pred CCCCccEEEecccC--C---CcceeEeecceeeEEEEeecC---------------------------------------
Q 018344 103 GLNKLKEIKLDSNR--C---GLERVYINGVNVHSVDIKVYL--------------------------------------- 138 (357)
Q Consensus 103 ~~~~L~~L~l~~c~--~---~l~~~~~~~p~L~~L~l~~~~--------------------------------------- 138 (357)
.+++|++|++++|. . .+..+...+|+|++|++.+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 33566666666653 0 011111123455555544310
Q ss_pred --------------CC---ceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccccccc---ccccccc
Q 018344 139 --------------EP---CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN---ISSPRLK 198 (357)
Q Consensus 139 --------------~~---~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~---~~~~~L~ 198 (357)
.. .......+++|++|+++++.+++..+..++.++++|+.|++++|.....+. ...++|+
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 00 000112567899999999998888788888999999999998772222222 2267899
Q ss_pred EEEccc
Q 018344 199 ELVFER 204 (357)
Q Consensus 199 ~L~l~~ 204 (357)
+|++.+
T Consensus 342 ~L~L~~ 347 (594)
T 2p1m_B 342 ELRVFP 347 (594)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 998843
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.55 E-value=4.9e-15 Score=137.68 Aligned_cols=145 Identities=15% Similarity=0.226 Sum_probs=76.8
Q ss_pred CCeEEEEEecCCcceecCccc-ccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~~i-~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
+++.+++ +++....+|..+ ..+++|++|++++|.+.. +..+.++++|++|+|++|.+... .+..++.+++|++|
T Consensus 46 ~l~~l~l--~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 46 NQKIVTF--KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVL 122 (390)
T ss_dssp CCSEEEE--ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CceEEEe--cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEE
Confidence 3444443 444455666654 346777777777766544 33566777777777777765321 12234566777777
Q ss_pred eeecCCCCCccC---cCCCCCccEEEecccCC-Ccc-eeEeecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344 89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRC-GLE-RVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (357)
Q Consensus 89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~-~l~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i 161 (357)
++++|. ++.+. +.++++|++|++++|.. ... ......++|++|+++++.+.. ..+..+++|+.++++++.+
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCC
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccc
Confidence 777764 33332 23456677777776652 111 111234566666666543321 1233444454444444443
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.55 E-value=2.1e-14 Score=133.49 Aligned_cols=255 Identities=17% Similarity=0.123 Sum_probs=147.4
Q ss_pred CCCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
+.++.++ ++++....+|. .+..+++|++|++++|.+.. |..+.++++|++|+|++|.++.- ...++..+++|++
T Consensus 69 ~~L~~L~--L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLN--LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEE--CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred ccCcEEE--CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcE
Confidence 4566665 46666667775 66778999999999988766 44678899999999999977421 1223567899999
Q ss_pred EeeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc------------------eeecc
Q 018344 88 ININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC------------------EVNVS 146 (357)
Q Consensus 88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~------------------~~~~~ 146 (357)
|++++|.. +.+ .+.++++|++|++++|.. ...-....++|+.+++++..... .....
T Consensus 146 L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 146 LSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp EECCSSCC-CBCCTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred EECCCCcc-CccChhhccCCCCCCEEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence 99998763 322 245668889999888862 11111124455555554432220 01112
Q ss_pred ccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc---ccccccEEEcccccccccccccCCCcceEEe
Q 018344 147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFELDTPNLSIFKC 223 (357)
Q Consensus 147 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~ 223 (357)
..++|+.|+++++.+++. ..+..+++|+.|+++++..-...+. ..++|++|+++++ .++.+...
T Consensus 224 ~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------- 290 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY--------- 290 (390)
T ss_dssp CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECS---------
T ss_pred ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcc---------
Confidence 234566666666666442 2355666777777655432211111 1455666666665 34432211
Q ss_pred eeeeeeEecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEE
Q 018344 224 FNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFS 303 (357)
Q Consensus 224 ~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~ 303 (357)
....+.|+.++++.+..... ...+..+++++.|.+..+.... + ....+++|++|++.
T Consensus 291 -------~~~l~~L~~L~L~~n~l~~~-------~~~~~~l~~L~~L~L~~N~i~~--~-------~~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 291 -------GQPIPTLKVLDLSHNHLLHV-------ERNQPQFDRLENLYLDHNSIVT--L-------KLSTHHTLKNLTLS 347 (390)
T ss_dssp -------SSCCTTCCEEECCSSCCCCC-------GGGHHHHTTCSEEECCSSCCCC--C-------CCCTTCCCSEEECC
T ss_pred -------cCCCCCCCEEECCCCcceec-------CccccccCcCCEEECCCCccce--e-------CchhhccCCEEEcC
Confidence 01234555555533221111 1224567899998887654322 1 23356889999998
Q ss_pred Eec
Q 018344 304 VLS 306 (357)
Q Consensus 304 ~~~ 306 (357)
+++
T Consensus 348 ~N~ 350 (390)
T 3o6n_A 348 HND 350 (390)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=3.5e-15 Score=146.46 Aligned_cols=139 Identities=14% Similarity=0.235 Sum_probs=72.5
Q ss_pred ecCCcceecCcccc-cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCC
Q 018344 20 VGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL 96 (357)
Q Consensus 20 ~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l 96 (357)
++++....+|..++ ++++|++|+|++|.+.. |..+.++++|++|+|++|.++.. .+..++++++|++|+|++|. +
T Consensus 58 l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l 135 (597)
T 3oja_B 58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERND-L 135 (597)
T ss_dssp ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-C
T ss_pred eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCC-C
Confidence 34444556665543 36677777777766544 33566677777777777665321 12234566677777776664 3
Q ss_pred CccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344 97 KSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (357)
Q Consensus 97 ~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i 161 (357)
+.++ +.++++|++|++++|.. .... ....+++|++|+++++.+.. ..++.+++|+.|++++|.+
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCC
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCcc
Confidence 3332 23456666777666652 1111 11234566666665543321 1233444455555544444
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=143.67 Aligned_cols=278 Identities=15% Similarity=0.106 Sum_probs=180.2
Q ss_pred CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.++.| |++++....++ ..+.++++|++|+|++|.+.. |..+.++++|++|+|++|.++.. ....+.++++|++|
T Consensus 33 ~l~~L--~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 109 (477)
T 2id5_A 33 ETRLL--DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKL 109 (477)
T ss_dssp TCSEE--ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEE
T ss_pred CCcEE--ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEE
Confidence 45554 55677777775 467779999999999997765 66889999999999999977421 12235678999999
Q ss_pred eeecCCCCCc--cCcCCCCCccEEEecccCC-Ccc-eeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccC
Q 018344 89 NINNCPGLKS--LQLLGLNKLKEIKLDSNRC-GLE-RVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 89 ~L~~c~~l~~--l~l~~~~~L~~L~l~~c~~-~l~-~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~ 162 (357)
++++|..... -.+.++++|++|++++|.. ... .....+++|++|+++++.+.. ...+.++++|+.|+++++.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999864221 2345678999999998862 111 112247899999999864431 124678899999999998875
Q ss_pred HHHHHHHhccCCccceeeccccccccccccc---cccccEEEccccccccccc----ccCCCcceEEeeeee-eeE----
Q 018344 163 DKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV-ESF---- 230 (357)
Q Consensus 163 ~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~----i~~~~L~~~~~~~~~-~~~---- 230 (357)
+. ....+..+++|+.|++++|..+..++.. ..+|++|++++| +++++. -..++|+.+...+.. ...
T Consensus 190 ~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 190 AI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp EE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred Ee-ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 42 2235678999999999988777665543 348999999988 666544 134556665554432 111
Q ss_pred ecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEec
Q 018344 231 SSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS 306 (357)
Q Consensus 231 ~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~ 306 (357)
......|+.+++..+..... ....+.++++|+.|++..+.. ..+++.. ...+++|++|.+.+++
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~N~l--~~~~~~~----~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVV------EPYAFRGLNYLRVLNVSGNQL--TTLEESV----FHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEE------CTTTBTTCTTCCEEECCSSCC--SCCCGGG----BSCGGGCCEEECCSSC
T ss_pred ccccccCCEEECCCCccceE------CHHHhcCcccCCEEECCCCcC--ceeCHhH----cCCCcccCEEEccCCC
Confidence 11235566666533111110 012345677788877754432 2233321 1234678888887543
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=140.69 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=58.9
Q ss_pred CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.+++++ ++++....+| ..+.++++|++|+|++|.+.. |..+.++++|++|+|++|.++. ++.. .+++|++|
T Consensus 22 ~L~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L 95 (520)
T 2z7x_B 22 KTTILN--ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHL 95 (520)
T ss_dssp TCSEEE--CCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEE
T ss_pred cccEEE--CCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCccEE
Confidence 344444 4555555555 345567777777777776654 4466777777777777776641 2221 56777777
Q ss_pred eeecCCCCC-c--cCcCCCCCccEEEecccC
Q 018344 89 NINNCPGLK-S--LQLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 89 ~L~~c~~l~-~--l~l~~~~~L~~L~l~~c~ 116 (357)
++++|..-. . -.+.++++|++|++++|.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc
Confidence 777765321 1 123445667777777665
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=139.75 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=106.3
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.+|++++....+|..+. ++|++|++++|.+.. + ..+.++++|++|+|++|.++.. .+..++++++|++|++++|.
T Consensus 4 ~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc
Confidence 57788888889998776 899999999998876 3 4688999999999999987532 13456789999999999986
Q ss_pred CCCccCcCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecCCCceeeccccccc--cceeeccccc
Q 018344 95 GLKSLQLLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNL--THLRLDGLSI 161 (357)
Q Consensus 95 ~l~~l~l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L--~~L~L~~~~i 161 (357)
++.++...+++|++|++++|... .+.....+++|++|+++++.+.. ..+..+++| +.|++++|.+
T Consensus 81 -l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 -LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp -CCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTT
T ss_pred -eeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeecccc
Confidence 55554446789999999999731 11223357789999998865542 345566667 8888877766
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.52 E-value=1.9e-14 Score=141.35 Aligned_cols=192 Identities=18% Similarity=0.196 Sum_probs=135.9
Q ss_pred EEEEecCCcceecCcc-cccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 16 LKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 16 l~l~~~~~~~~~lP~~-i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
-.++++++....+|.. +..+++|++|++++|.+.. |..+.++++|++|++++|.+... .+..+..+++|++|++++|
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCC
Confidence 3466677777777766 5568999999999998776 77888999999999999977432 1334678899999999998
Q ss_pred CCCCcc---CcCCCCCccEEEecccCCCccee-----EeecceeeEEEEeecCCCc--eeeccccccccceeecccccCH
Q 018344 94 PGLKSL---QLLGLNKLKEIKLDSNRCGLERV-----YINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITD 163 (357)
Q Consensus 94 ~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~-----~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~ 163 (357)
.....+ .+..+++|++|++++|.. .... ...+++|++|+++++.+.. ...+..+++|+.|++++|.+++
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CcccccchhhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 643232 245678999999998872 2111 2246789999988754321 1356678889999999888754
Q ss_pred HHHHHHhccCCccceeecccccccccccc---ccccccEEEccccccccc
Q 018344 164 KWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVE 210 (357)
Q Consensus 164 ~~~~~l~~~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~L~~ 210 (357)
...+..+.++++|+.|++++|......+. ..++|++|++++| .+++
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 463 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPK 463 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGG
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC-CCCc
Confidence 33334467888999999976654332222 2578889998888 4543
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=2.6e-13 Score=124.36 Aligned_cols=262 Identities=13% Similarity=0.119 Sum_probs=161.8
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
.|.++.....+|..+. ++|++|++++|.+.. + ..+.++++|++|++++|.++.. .+..+.++++|++|++++|.
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~- 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNY- 111 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCc-
Confidence 4556667778887665 478888888887665 3 3678888888888888876431 12335678888888888875
Q ss_pred CCccC---cCCCCCccEEEecccCC-Ccce--eEeecceeeEEEEeecC-CCc--eeeccccccccceeecccccCHHHH
Q 018344 96 LKSLQ---LLGLNKLKEIKLDSNRC-GLER--VYINGVNVHSVDIKVYL-EPC--EVNVSSCKNLTHLRLDGLSITDKWL 166 (357)
Q Consensus 96 l~~l~---l~~~~~L~~L~l~~c~~-~l~~--~~~~~p~L~~L~l~~~~-~~~--~~~~~~~~~L~~L~L~~~~i~~~~~ 166 (357)
++.+. +.++++|++|++++|.. .+.. ....+++|++|+++++. ... ...+.++++|++|++++|.+++. .
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-E 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-C
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-C
Confidence 33333 44567888888888863 2222 22347788888888752 221 13466788888999988877542 2
Q ss_pred HHHhccCCccceeeccccccccccccc----cccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEE
Q 018344 167 YNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLL 242 (357)
Q Consensus 167 ~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l 242 (357)
+..+..+++|+.|+++++. +..++.. .++|+.|+++++ .++...... +... .....+...++
T Consensus 191 ~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~--l~~~----------~~~~~l~~l~L 256 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSE--LSTG----------ETNSLIKKFTF 256 (353)
T ss_dssp TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------------------CCCCCCEEEE
T ss_pred HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccc--cccc----------cccchhhcccc
Confidence 4456778889999887654 3333322 577888888887 455432111 0000 00112233333
Q ss_pred EEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEec
Q 018344 243 CFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS 306 (357)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~ 306 (357)
.... ..+.-...+.+.+..+++++.|.+..+... .+|+.. ...+++|++|.+.+++
T Consensus 257 ~~~~--l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~----~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 257 RNVK--ITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGI----FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ESCB--CCHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTT----TTTCTTCCEEECCSSC
T ss_pred cccc--ccCcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHH----HhcCCCCCEEEeeCCC
Confidence 2211 111112355667888999999888665433 444432 1245789999998664
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.52 E-value=2.6e-14 Score=129.70 Aligned_cols=171 Identities=22% Similarity=0.337 Sum_probs=133.3
Q ss_pred CCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccEEE
Q 018344 35 LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIK 111 (357)
Q Consensus 35 ~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L~ 111 (357)
..+++.|+|+++.+.. |..+.++++|++|+|++|.+. .++..++.+++|++|++++|. ++.+ .+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 4689999999998877 777888999999999999876 345556889999999999986 3343 345678999999
Q ss_pred ecccCCCccee------------EeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCccce
Q 018344 112 LDSNRCGLERV------------YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY 178 (357)
Q Consensus 112 l~~c~~~l~~~------------~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~ 178 (357)
+++|. ....+ .-.+++|++|+++++.+. ....+.++++|++|++++|.+++ ++..+.++++|+.
T Consensus 157 L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 157 IRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCE
T ss_pred CCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCE
Confidence 99987 33222 113889999999985432 12457888999999999999864 3445788999999
Q ss_pred eeccccccccccccc---cccccEEEcccccccccc
Q 018344 179 LALHYCMKLRSINIS---SPRLKELVFERCEELVEF 211 (357)
Q Consensus 179 L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~ 211 (357)
|++++|.....++.. .++|+.|++++|..+..+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence 999988877766653 578999999998655543
No 32
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=1.4e-14 Score=137.46 Aligned_cols=319 Identities=14% Similarity=0.096 Sum_probs=185.3
Q ss_pred HHHhCCCeEEEEEecCCc---ceecCcccccCCCccEEEeeccccCC--CC-CccCCC----CCceEEeeccccCH---H
Q 018344 7 YAFASNVKELKLDVGCCR---IYNLPQIVFYLKSIYVLDFEFCKLEP--PR-STVTLF----SLRKLCLSFVHVDD---E 73 (357)
Q Consensus 7 ~~~~~~v~~l~l~~~~~~---~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~-~~~~l~----~L~~L~L~~~~~~~---~ 73 (357)
+..-+.++.+++.-..-. ...+|..+..+++|++|+|++|.+.. +. ....++ +|++|+|++|.+++ .
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 334467787776533311 12566667778888888888877543 11 122344 68888888888754 3
Q ss_pred HHHHHHcCCCCccEEeeecCCCCCccC--------cCCCCCccEEEecccCCCc------ceeEeecceeeEEEEeecCC
Q 018344 74 VIRDMVAGCPLIEYININNCPGLKSLQ--------LLGLNKLKEIKLDSNRCGL------ERVYINGVNVHSVDIKVYLE 139 (357)
Q Consensus 74 ~l~~l~~~~~~L~~L~L~~c~~l~~l~--------l~~~~~L~~L~l~~c~~~l------~~~~~~~p~L~~L~l~~~~~ 139 (357)
.+...+..+++|++|++++|. +.... ....++|++|++++|...- ......+++|++|+++++.+
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 556667788888888888876 32110 1112478888888886211 11111357888888887543
Q ss_pred Cc--eeecc-----ccccccceeecccccCHH---HHHHHhccCCccceeecccccccccc-----c----cccccccEE
Q 018344 140 PC--EVNVS-----SCKNLTHLRLDGLSITDK---WLYNQISELPFLEYLALHYCMKLRSI-----N----ISSPRLKEL 200 (357)
Q Consensus 140 ~~--~~~~~-----~~~~L~~L~L~~~~i~~~---~~~~l~~~~~~L~~L~l~~~~~l~~l-----~----~~~~~L~~L 200 (357)
.. ...+. ..++|++|++++|.+++. .+...+..+++|+.|++++|. +... . ...++|++|
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEE
Confidence 21 01111 234788999998888763 356667788999999987664 3221 1 125678888
Q ss_pred Eccccccccccc--------ccCCCcceEEeeeee----e--eEe----cccccceeEEEEEEecCCChHHHHHHHHHHh
Q 018344 201 VFERCEELVEFE--------LDTPNLSIFKCFNYV----E--SFS----SNALALSQTLLCFISHPVDNEWYLKFIKLLA 262 (357)
Q Consensus 201 ~l~~c~~L~~~~--------i~~~~L~~~~~~~~~----~--~~~----~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~ 262 (357)
++++| .+++.. -..++|+.+...+.. . .+. .+...++.++++.+..... . ...+...+.
T Consensus 262 ~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~-~~~l~~~l~ 338 (461)
T 1z7x_W 262 WIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA-C-CSHFSSVLA 338 (461)
T ss_dssp ECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-G-HHHHHHHHH
T ss_pred ECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH-H-HHHHHHHHh
Confidence 88888 666521 124566666554432 0 000 0124677666643221111 1 134566777
Q ss_pred hcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEee
Q 018344 263 RFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333 (357)
Q Consensus 263 ~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~ 333 (357)
.++++++|.+..+....... ..+.+......++|++|.+.++. .... ....++..+..+|+|+.|.+.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~-i~~~-~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGV-RELCQGLGQPGSVLRVLWLADCD-VSDS-SCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSC-CCHH-HHHHHHHHHHHCCCCCEEECC
T ss_pred hCCCccEEEccCCccccccH-HHHHHHHcCCCCceEEEECCCCC-CChh-hHHHHHHHHHhCCCccEEECC
Confidence 88889988886654332211 11111111124678888887653 2222 233455566678888888883
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=145.75 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=75.4
Q ss_pred EEEEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeec
Q 018344 15 ELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN 92 (357)
Q Consensus 15 ~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~ 92 (357)
...+|.+......+|. -.+++++|+|++|.+.. |..+.++++|++|+|++|......-+..++++++|++|+|++
T Consensus 6 ~~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp TEEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred ceEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 3445555555666665 23566666666665543 445666666666666666331111122345666666666666
Q ss_pred CCCCCcc---CcCCCCCccEEEecccCCC---cce-eEeecceeeEEEEeecCCCc---eeeccccccccceeecccccC
Q 018344 93 CPGLKSL---QLLGLNKLKEIKLDSNRCG---LER-VYINGVNVHSVDIKVYLEPC---EVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 93 c~~l~~l---~l~~~~~L~~L~l~~c~~~---l~~-~~~~~p~L~~L~l~~~~~~~---~~~~~~~~~L~~L~L~~~~i~ 162 (357)
|.. ..+ .+.++++|++|++++|... ... ....+++|++|+++++.+.. ...++++++|++|++++|.++
T Consensus 83 N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 542 222 2344566666666666521 111 12235566666666643211 123556666666666666553
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=6e-14 Score=137.63 Aligned_cols=255 Identities=17% Similarity=0.123 Sum_probs=148.9
Q ss_pred CCCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
..++.|+ ++++....+|+ .+..+++|++|+|++|.+.. |..+.++++|++|+|++|.++.- .+.+++++++|++
T Consensus 75 ~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~ 151 (597)
T 3oja_B 75 RQVELLN--LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT 151 (597)
T ss_dssp CCCSEEE--CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEE--CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCE
Confidence 4555554 56666667765 67779999999999988766 44678999999999999977421 1233578899999
Q ss_pred EeeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc------------------eeecc
Q 018344 88 ININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC------------------EVNVS 146 (357)
Q Consensus 88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~------------------~~~~~ 146 (357)
|++++|.. ..+ .+.++++|++|++++|.. ........|+|+.++++++.+.. .....
T Consensus 152 L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 152 LSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp EECCSSCC-CBCCTTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred EEeeCCcC-CCCChhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 99998863 322 345668899999988862 11111124455555554432220 00111
Q ss_pred ccccccceeecccccCHHHHHHHhccCCccceeeccccccccccccc---cccccEEEcccccccccccccCCCcceEEe
Q 018344 147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFELDTPNLSIFKC 223 (357)
Q Consensus 147 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~ 223 (357)
..++|+.|++++|.+++. ..+..+++|+.|++++|......+.. .++|+.|+++++ .++.+...
T Consensus 230 ~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~--------- 296 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY--------- 296 (597)
T ss_dssp CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECS---------
T ss_pred cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcc---------
Confidence 124566666666666542 34566777777777654322222211 456666666665 44432211
Q ss_pred eeeeeeEecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEE
Q 018344 224 FNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFS 303 (357)
Q Consensus 224 ~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~ 303 (357)
....+.|+.++++.+..... ...+..+++|+.|.+..+.... + ....+++|+.|.+.
T Consensus 297 -------~~~l~~L~~L~Ls~N~l~~i-------~~~~~~l~~L~~L~L~~N~l~~--~-------~~~~~~~L~~L~l~ 353 (597)
T 3oja_B 297 -------GQPIPTLKVLDLSHNHLLHV-------ERNQPQFDRLENLYLDHNSIVT--L-------KLSTHHTLKNLTLS 353 (597)
T ss_dssp -------SSCCTTCCEEECCSSCCCCC-------GGGHHHHTTCSEEECCSSCCCC--C-------CCCTTCCCSEEECC
T ss_pred -------cccCCCCcEEECCCCCCCcc-------CcccccCCCCCEEECCCCCCCC--c-------ChhhcCCCCEEEee
Confidence 11233555555533221111 2224567889998886654322 1 12346789999998
Q ss_pred Eec
Q 018344 304 VLS 306 (357)
Q Consensus 304 ~~~ 306 (357)
+++
T Consensus 354 ~N~ 356 (597)
T 3oja_B 354 HND 356 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 664
No 35
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=1.2e-14 Score=142.42 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=128.8
Q ss_pred CCCeEEEEEecCCccee-----cCcccccCCCccEEEeeccccCC------CCCccCCCCCceEEeeccccCHHHHHHHH
Q 018344 11 SNVKELKLDVGCCRIYN-----LPQIVFYLKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVDDEVIRDMV 79 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~-----lP~~i~~~~~L~~L~Ls~~~~~~------p~~~~~l~~L~~L~L~~~~~~~~~l~~l~ 79 (357)
+.+++|++ +.+.... ++.....+++|++|+++++.+.. +..+.++++|++|++++|.+.. ++..+
T Consensus 164 ~~L~~L~L--~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~ 239 (592)
T 3ogk_B 164 RKIKTLLM--EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFF 239 (592)
T ss_dssp TTCSEEEC--TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHH
T ss_pred CCCCEEEC--ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHH
Confidence 56777765 4432221 33344568899999999887652 2234578999999999986643 56778
Q ss_pred cCCCCccEEeeecCCC----------------CCccC------------cCCCCCccEEEecccCCCcc---eeEeecce
Q 018344 80 AGCPLIEYININNCPG----------------LKSLQ------------LLGLNKLKEIKLDSNRCGLE---RVYINGVN 128 (357)
Q Consensus 80 ~~~~~L~~L~L~~c~~----------------l~~l~------------l~~~~~L~~L~l~~c~~~l~---~~~~~~p~ 128 (357)
..+++|++|+++.+.. ++.+. +..+++|++|++++|..... .+...+|+
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 8889999999874321 11111 12347899999999872111 11235789
Q ss_pred eeEEEEeecCCC--ceeeccccccccceeec-----------ccccCHHHHHHHhccCCccceeecccccccccc-----
Q 018344 129 VHSVDIKVYLEP--CEVNVSSCKNLTHLRLD-----------GLSITDKWLYNQISELPFLEYLALHYCMKLRSI----- 190 (357)
Q Consensus 129 L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~-----------~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l----- 190 (357)
|++|++.+.... ......++++|++|+++ .+.+++..+..+..++++|+.|++ +|..+...
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l 398 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESI 398 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHH
Confidence 999999742111 11223567889999999 367877777888888999999999 55555321
Q ss_pred ccccccccEEEccc---cccccc
Q 018344 191 NISSPRLKELVFER---CEELVE 210 (357)
Q Consensus 191 ~~~~~~L~~L~l~~---c~~L~~ 210 (357)
....++|++|++.. |..+++
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSS
T ss_pred HhhCCCCcEEEEeecCCCccccC
Confidence 12267899999974 445554
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.50 E-value=3.5e-14 Score=128.88 Aligned_cols=277 Identities=14% Similarity=0.053 Sum_probs=141.5
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
+++++.....+|..+. +++++|++++|.+.. + ..+.++++|++|+|++|.++.. .+..+..+++|++|++++|.
T Consensus 36 l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~- 111 (330)
T 1xku_A 36 VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ- 111 (330)
T ss_dssp EECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-
T ss_pred EEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCc-
Confidence 4455555666776553 578888888877665 3 3577788888888888766321 12335677888888888765
Q ss_pred CCccCcCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeecCCC----ceeeccccccccceeecccccCHHHHHHH
Q 018344 96 LKSLQLLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVYLEP----CEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (357)
Q Consensus 96 l~~l~l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~~~~----~~~~~~~~~~L~~L~L~~~~i~~~~~~~l 169 (357)
++.++..-.++|++|++++|... ... ....+++|++|++++.... ....+.++++|+.|+++++.+++ ++.
T Consensus 112 l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~- 188 (330)
T 1xku_A 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQ- 188 (330)
T ss_dssp CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCS-
T ss_pred CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCc-
Confidence 44443333367888888777521 110 1123456666666553221 01234455666666666665532 111
Q ss_pred hccCCccceeeccccccccccc-c---ccccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEEEEE
Q 018344 170 ISELPFLEYLALHYCMKLRSIN-I---SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFI 245 (357)
Q Consensus 170 ~~~~~~L~~L~l~~~~~l~~l~-~---~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~ 245 (357)
...++|+.|+++++. +..+. . ..++|++|+++++ .++++.... ......++.++++.+
T Consensus 189 -~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~---------------~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 189 -GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGS---------------LANTPHLRELHLNNN 250 (330)
T ss_dssp -SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTT---------------GGGSTTCCEEECCSS
T ss_pred -cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChhh---------------ccCCCCCCEEECCCC
Confidence 112556666665443 22221 1 1345566666555 333321000 011234444444321
Q ss_pred ecCCChHHHHHHHHHHhhcccccceeEEeeccccceeccccccc--CCCCCCCcceEEEEEeccchhhhHHHHHHHHhhh
Q 018344 246 SHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREI--LCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWI 323 (357)
Q Consensus 246 ~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~--~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~ 323 (357)
.... +...+..+++++.|.+..+.. ..++...... .......++.|.+.+++ ...+.+.+.-..+
T Consensus 251 ~l~~-------lp~~l~~l~~L~~L~l~~N~i--~~~~~~~f~~~~~~~~~~~l~~l~l~~N~----~~~~~i~~~~f~~ 317 (330)
T 1xku_A 251 KLVK-------VPGGLADHKYIQVVYLHNNNI--SAIGSNDFCPPGYNTKKASYSGVSLFSNP----VQYWEIQPSTFRC 317 (330)
T ss_dssp CCSS-------CCTTTTTCSSCCEEECCSSCC--CCCCTTSSSCSSCCTTSCCCSEEECCSSS----SCGGGSCGGGGTT
T ss_pred cCcc-------CChhhccCCCcCEEECCCCcC--CccChhhcCCcccccccccccceEeecCc----ccccccCcccccc
Confidence 1111 112245667777777754432 2233222111 11224567778777553 1123344455677
Q ss_pred CCCCCeeEe
Q 018344 324 TPHAETLSI 332 (357)
Q Consensus 324 ~p~le~L~l 332 (357)
+++++.+.+
T Consensus 318 ~~~l~~l~L 326 (330)
T 1xku_A 318 VYVRAAVQL 326 (330)
T ss_dssp CCCGGGEEC
T ss_pred ccceeEEEe
Confidence 778887776
No 37
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=9.2e-15 Score=138.69 Aligned_cols=305 Identities=16% Similarity=0.149 Sum_probs=177.6
Q ss_pred EEecCCcceecC--cccccCCCccEEEeeccccCC------CCCccCCCCCceEEeeccccCHHHHHHHHcCCC----Cc
Q 018344 18 LDVGCCRIYNLP--QIVFYLKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCP----LI 85 (357)
Q Consensus 18 l~~~~~~~~~lP--~~i~~~~~L~~L~Ls~~~~~~------p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~----~L 85 (357)
+|++++.....+ ..+..+++|++|++++|.+.. +..+..+++|++|+|++|.+++..+..+...++ +|
T Consensus 8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L 87 (461)
T 1z7x_W 8 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 87 (461)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred hhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCce
Confidence 444554433332 225568899999999998663 234667899999999999887777777777666 79
Q ss_pred cEEeeecCCCCCc-------cCcCCCCCccEEEecccCCC---cceeE----eecceeeEEEEeecCCCc------eeec
Q 018344 86 EYININNCPGLKS-------LQLLGLNKLKEIKLDSNRCG---LERVY----INGVNVHSVDIKVYLEPC------EVNV 145 (357)
Q Consensus 86 ~~L~L~~c~~l~~-------l~l~~~~~L~~L~l~~c~~~---l~~~~----~~~p~L~~L~l~~~~~~~------~~~~ 145 (357)
++|++++|. ++. -.+..+++|++|++++|... ...+. ...++|++|+++++.+.. ...+
T Consensus 88 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 88 QKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 999999986 332 12446689999999998721 11111 113479999998854431 1234
Q ss_pred cccccccceeecccccCHHHHHHHh----ccCCccceeecccccccc----cccc---ccccccEEEcccccccccccc-
Q 018344 146 SSCKNLTHLRLDGLSITDKWLYNQI----SELPFLEYLALHYCMKLR----SINI---SSPRLKELVFERCEELVEFEL- 213 (357)
Q Consensus 146 ~~~~~L~~L~L~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~~l~----~l~~---~~~~L~~L~l~~c~~L~~~~i- 213 (357)
..+++|++|++++|.+++.....+. ...++|+.|++++|.--. .++. ..++|++|++++| .+++..+
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 245 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMA 245 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHH
Confidence 5678899999999998765443333 246799999998764321 1222 2578999999998 5654321
Q ss_pred --------cCCCcceEEeeeee--e-----eEe--cccccceeEEEEEEecCCChHHHHHHHHHHh-hcccccceeEEee
Q 018344 214 --------DTPNLSIFKCFNYV--E-----SFS--SNALALSQTLLCFISHPVDNEWYLKFIKLLA-RFNLCSNVLNLQC 275 (357)
Q Consensus 214 --------~~~~L~~~~~~~~~--~-----~~~--~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~-~l~~lk~L~l~~~ 275 (357)
..++++.+...+.. . +.. .....++.++++.+... ......+.+.+. ..++++.|.+..+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~--~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG--DEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH--HHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc--hHHHHHHHHHhccCCccceeeEcCCC
Confidence 24556655554332 0 000 11345666655321110 000011222221 2357777777655
Q ss_pred ccccce---ecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEe
Q 018344 276 NHEAVL---IPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI 332 (357)
Q Consensus 276 ~~~~~~---~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l 332 (357)
...... ++..+ ...++|++|++..+. ........+...+-..+|+|++|.+
T Consensus 324 ~l~~~~~~~l~~~l-----~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 324 SFTAACCSHFSSVL-----AQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp CCBGGGHHHHHHHH-----HHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred CCchHHHHHHHHHH-----hhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEEC
Confidence 432211 11111 123678888887553 2222222222333334678888888
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.49 E-value=2e-15 Score=143.10 Aligned_cols=144 Identities=10% Similarity=0.054 Sum_probs=105.6
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.++........+|. + .++|++|+|++|.+.. |..+.++++|++|+|++|.+.....+..+.++++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 45666667788887 3 3789999999998765 56789999999999999976322223346789999999999987
Q ss_pred CCCc--cCcCCCCCccEEEecccCCC---cce-eEeecceeeEEEEeecCCCc--eee-ccccccccceeecccccCH
Q 018344 95 GLKS--LQLLGLNKLKEIKLDSNRCG---LER-VYINGVNVHSVDIKVYLEPC--EVN-VSSCKNLTHLRLDGLSITD 163 (357)
Q Consensus 95 ~l~~--l~l~~~~~L~~L~l~~c~~~---l~~-~~~~~p~L~~L~l~~~~~~~--~~~-~~~~~~L~~L~L~~~~i~~ 163 (357)
.-.. -.+.++++|++|++++|... ... ....+++|++|+++++.+.. ... +.++++|++|++++|.+++
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 4222 24566799999999999731 111 12247899999999854431 122 6788999999999988754
No 39
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=6.5e-14 Score=137.23 Aligned_cols=254 Identities=16% Similarity=0.042 Sum_probs=166.0
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
.+++.++ ++++....+|..+. ++|++|++++|.+.. |. .+++|++|+|++|.++. ++. .+++|++|+
T Consensus 40 ~~l~~L~--ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLN--VGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEE--CCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEEE
T ss_pred CCCcEEE--ecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEE
Confidence 3455554 56777789998776 799999999998876 43 68999999999998742 222 789999999
Q ss_pred eecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344 90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (357)
Q Consensus 90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l 169 (357)
+++|. ++.++. .+++|+.|++++|. +..+....++|++|+++++.+.. .-..+++|+.|++++|.++. ++
T Consensus 108 Ls~N~-l~~l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~--l~-- 177 (622)
T 3g06_A 108 IFSNP-LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTS--LP-- 177 (622)
T ss_dssp ECSCC-CCCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSC--CC--
T ss_pred CcCCc-CCCCCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCC--cCCccCCCCEEECCCCCCCC--Cc--
Confidence 99986 444443 45789999999886 22233345899999998865431 01234678899999888854 22
Q ss_pred hccCCccceeeccccccccccccccccccEEEcccccccccccccCCCcceEEeeeee-eeEecccccceeEEEEEEecC
Q 018344 170 ISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYV-ESFSSNALALSQTLLCFISHP 248 (357)
Q Consensus 170 ~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~ 248 (357)
..+++|+.|++++| .+..++...++|+.|.+++| .++.+.-..++|..+...+.. ..+......|+.++++.+...
T Consensus 178 -~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 178 -MLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT 254 (622)
T ss_dssp -CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred -ccCCCCcEEECCCC-CCCCCCCccchhhEEECcCC-cccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC
Confidence 56788999999654 46666666788889988887 566544333455555544432 111122345666655432111
Q ss_pred CChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEec
Q 018344 249 VDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS 306 (357)
Q Consensus 249 ~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~ 306 (357)
.+-..+++++.|++..+... .+|+.+. .+++|+.|.+.+++
T Consensus 255 ----------~lp~~~~~L~~L~Ls~N~L~--~lp~~l~-----~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 255 ----------SLPMLPSGLLSLSVYRNQLT--RLPESLI-----HLSSETTVNLEGNP 295 (622)
T ss_dssp ----------CCCCCCTTCCEEECCSSCCC--SCCGGGG-----GSCTTCEEECCSCC
T ss_pred ----------cCCcccccCcEEeCCCCCCC--cCCHHHh-----hccccCEEEecCCC
Confidence 11114567777777654333 4454333 35678888887654
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=8.3e-14 Score=132.03 Aligned_cols=181 Identities=17% Similarity=0.074 Sum_probs=90.9
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
++..+.....+|..+. +++++|+|++|.+.. +..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.
T Consensus 59 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~- 134 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNW- 134 (452)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred EEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCc-
Confidence 4444455556665543 467777777766544 44566677777777777655321 11234556677777776654
Q ss_pred CCccC---cCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeec-CCCc--eeeccccccccceeecccccCHHHHH
Q 018344 96 LKSLQ---LLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVY-LEPC--EVNVSSCKNLTHLRLDGLSITDKWLY 167 (357)
Q Consensus 96 l~~l~---l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~-~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~ 167 (357)
++.+. +.++++|++|++++|... +.. ....+++|++|++++. .... ...+.++++|+.|++++|.+++- +
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~ 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c
Confidence 33222 334566666666666521 000 1113456666666552 1110 01244555666666666655331 1
Q ss_pred HHhccCCccceeecccccccccccc---ccccccEEEcccc
Q 018344 168 NQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERC 205 (357)
Q Consensus 168 ~l~~~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c 205 (357)
.+..+++|+.|+++++......+. ..++|+.|+++++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 144555666666654332111111 1345555655555
No 41
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=1.9e-13 Score=122.91 Aligned_cols=184 Identities=17% Similarity=0.172 Sum_probs=98.3
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
..+++++ ++++....+| .+..+++|++|++++|.+.....+.++++|++|+|++|.++.- + .+..+++|++|++
T Consensus 41 ~~L~~L~--l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLS--AFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEE--CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEEC
T ss_pred CCcCEEE--eeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEEC
Confidence 3455544 3444455555 4566777777777777665522266777777777777766321 2 2556777777777
Q ss_pred ecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344 91 NNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (357)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l 169 (357)
++|..-..-.+..+++|++|++++|.. .... ...+++|++|+++++.+.....+..+++|+.|++++|.+++-. .
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~- 190 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--P- 190 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh--h-
Confidence 776532222344556777777776652 1111 1234566666666543321112455566666666666654311 1
Q ss_pred hccCCccceeeccccccccccccc--cccccEEEcccc
Q 018344 170 ISELPFLEYLALHYCMKLRSINIS--SPRLKELVFERC 205 (357)
Q Consensus 170 ~~~~~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~c 205 (357)
+..+++|+.|++++|. +..++.. .++|+.|+++++
T Consensus 191 l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEE
T ss_pred hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCC
Confidence 4556666666665443 2222211 345555555554
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.47 E-value=3.4e-14 Score=129.14 Aligned_cols=276 Identities=13% Similarity=0.052 Sum_probs=145.6
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
+++++.....+|..+. ++|++|++++|.+.. |..+.++++|++|++++|.++.. .+..+..+++|++|++++|.
T Consensus 38 l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~- 113 (332)
T 2ft3_A 38 VQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNH- 113 (332)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSC-
T ss_pred EECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCc-
Confidence 3445555666776553 467777777776554 34667777788888877766321 12335567777888877765
Q ss_pred CCccCcCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCC---c-eeeccccccccceeecccccCHHHHHHH
Q 018344 96 LKSLQLLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEP---C-EVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (357)
Q Consensus 96 l~~l~l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~---~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l 169 (357)
++.++..-.++|++|++++|.. .... ....+++|++|++++..+. . ...+..+ +|+.|+++++.+++ ++.
T Consensus 114 l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--l~~- 189 (332)
T 2ft3_A 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IPK- 189 (332)
T ss_dssp CCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--CCS-
T ss_pred CCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--cCc-
Confidence 3343332236777777777752 1111 1223566777777664321 0 1223333 57777777666643 111
Q ss_pred hccCCccceeecccccccccccc----ccccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEEEEE
Q 018344 170 ISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFI 245 (357)
Q Consensus 170 ~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~ 245 (357)
.-.++|+.|+++++. +..++. ..++|+.|+++++ .++++.-. .......++.++++.+
T Consensus 190 -~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~---------------~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 190 -DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENG---------------SLSFLPTLRELHLDNN 251 (332)
T ss_dssp -SSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT---------------GGGGCTTCCEEECCSS
T ss_pred -cccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChh---------------HhhCCCCCCEEECCCC
Confidence 112567777775443 222221 1355666666665 34332100 0011234444444321
Q ss_pred ecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccC--CCCCCCcceEEEEEeccchhhhHHHHHHHHhhh
Q 018344 246 SHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREIL--CPPLTYHKHVSFSVLSEILEVSLANLVDCLLWI 323 (357)
Q Consensus 246 ~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~--~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~ 323 (357)
.... +...+..+++++.|.+...... .++....... ...+..|++|.+.+++ ...+.+.+....+
T Consensus 252 ~l~~-------lp~~l~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~~~~~~~l~~L~l~~N~----~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 252 KLSR-------VPAGLPDLKLLQVVYLHTNNIT--KVGVNDFCPVGFGVKRAYYNGISLFNNP----VPYWEVQPATFRC 318 (332)
T ss_dssp CCCB-------CCTTGGGCTTCCEEECCSSCCC--BCCTTSSSCSSCCSSSCCBSEEECCSSS----SCGGGSCGGGGTT
T ss_pred cCee-------cChhhhcCccCCEEECCCCCCC--ccChhHccccccccccccccceEeecCc----ccccccCcccccc
Confidence 1111 1222567788888887654332 2332211111 1124678899988654 1122344566788
Q ss_pred CCCCCeeEe
Q 018344 324 TPHAETLSI 332 (357)
Q Consensus 324 ~p~le~L~l 332 (357)
+++|+.|.+
T Consensus 319 l~~L~~l~l 327 (332)
T 2ft3_A 319 VTDRLAIQF 327 (332)
T ss_dssp BCCSTTEEC
T ss_pred cchhhhhhc
Confidence 999999888
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.46 E-value=1.8e-13 Score=129.77 Aligned_cols=182 Identities=19% Similarity=0.206 Sum_probs=121.0
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
..++.++ ++++....+| +..+++|++|++++|.+... .+.++++|++|++++|.++.- + ++.+++|++|++
T Consensus 64 ~~L~~L~--Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLI--CTSNNITTLD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEE--CCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred CCCCEEE--ccCCcCCeEc--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence 3455554 4566666666 67788999999999887763 377889999999999977432 2 677888999999
Q ss_pred ecCCCCCccCcCCCCCccEEEecccCCCcceeEe-ecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344 91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (357)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l 169 (357)
++|. ++.+++..+++|++|++++|. ....+.+ .+++|++|++++..+.. ..+..+++|+.|++++|.+++. -
T Consensus 135 ~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~----~ 207 (457)
T 3bz5_A 135 ARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL----D 207 (457)
T ss_dssp TTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC----C
T ss_pred CCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCee----c
Confidence 8875 555667777888888888885 3333322 35677777777754332 2255667777777777766542 1
Q ss_pred hccCCccceeeccccccccccccc-cccccEEEccccccccc
Q 018344 170 ISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVE 210 (357)
Q Consensus 170 ~~~~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~ 210 (357)
++.+++|+.|+++++ .+..++.. .++|+.|+++++ .++.
T Consensus 208 l~~l~~L~~L~Ls~N-~l~~ip~~~l~~L~~L~l~~N-~l~~ 247 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSVN-PLTE 247 (457)
T ss_dssp CTTCTTCSEEECCSS-CCSCCCCTTCTTCSEEECCSS-CCSC
T ss_pred cccCCCCCEEECcCC-cccccCccccCCCCEEEeeCC-cCCC
Confidence 566677777777544 33334432 456666666665 3443
No 44
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=8.2e-15 Score=133.25 Aligned_cols=196 Identities=17% Similarity=0.223 Sum_probs=143.6
Q ss_pred HHHHhCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC---CCCccCCCCCceEEeeccccCHHHHHHHHcCC
Q 018344 6 SYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGC 82 (357)
Q Consensus 6 ~~~~~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~ 82 (357)
.....++++.+++ +++.....+..++++++|++|++++|.+.. +..+..+++|++|+|++|.+++.... .++.+
T Consensus 65 ~~~~~~~l~~L~l--~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~ 141 (336)
T 2ast_B 65 GRLLSQGVIAFRC--PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKN 141 (336)
T ss_dssp HHHHHTTCSEEEC--TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTC
T ss_pred HhhhhccceEEEc--CCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcC
Confidence 3344577777764 555566666678889999999999997653 34567899999999999988766544 45679
Q ss_pred CCccEEeeecCCCCCcc----CcCCCCCccEEEeccc-CCC---cceeEeecc-eeeEEEEeecC--CC---ceeecccc
Q 018344 83 PLIEYININNCPGLKSL----QLLGLNKLKEIKLDSN-RCG---LERVYINGV-NVHSVDIKVYL--EP---CEVNVSSC 148 (357)
Q Consensus 83 ~~L~~L~L~~c~~l~~l----~l~~~~~L~~L~l~~c-~~~---l~~~~~~~p-~L~~L~l~~~~--~~---~~~~~~~~ 148 (357)
++|++|++++|..++.. .+.++++|++|++++| ... +......+| +|++|+++++. .. ....+.++
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 99999999999655531 1335689999999999 421 122233578 99999998863 22 12345678
Q ss_pred ccccceeecccc-cCHHHHHHHhccCCccceeeccccccccccc----cccccccEEEcccc
Q 018344 149 KNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRSIN----ISSPRLKELVFERC 205 (357)
Q Consensus 149 ~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~----~~~~~L~~L~l~~c 205 (357)
++|+.|++++|. +++..+. .+..+++|+.|++++|..+.... ...++|+.|++++|
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999999999998 6665444 56788999999999886542221 12688999999998
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=6.1e-14 Score=132.92 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=74.1
Q ss_pred cCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc
Q 018344 21 GCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL 99 (357)
Q Consensus 21 ~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l 99 (357)
+++....+|.. .++|++|++++|.+.. |.. .++|++|++++|.++. ++. ++++++|++|++++|. ++.+
T Consensus 99 ~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~l 168 (454)
T 1jl5_A 99 SCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS-LKKL 168 (454)
T ss_dssp CSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSCC
T ss_pred cCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCc-Cccc
Confidence 33334445532 2455555555554433 110 1455555555554432 222 4445555555555543 2221
Q ss_pred ---------------------CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecc
Q 018344 100 ---------------------QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDG 158 (357)
Q Consensus 100 ---------------------~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~ 158 (357)
.+.++++|++|++++|.. ..+....++|++|+++++.+.....++++++|+.|++++
T Consensus 169 p~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l--~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 169 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL--KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 246 (454)
T ss_dssp CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC--SSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred CCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC--CcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCC
Confidence 222334455555554431 111111235555555553221111345555666666666
Q ss_pred cccCHHHHHHHhccCCccceeeccccccccccccccccccEEEcccc
Q 018344 159 LSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERC 205 (357)
Q Consensus 159 ~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 205 (357)
|.+++ ++ ...++|+.|++++| .+..++...++|+.|+++++
T Consensus 247 N~l~~--l~---~~~~~L~~L~l~~N-~l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 247 NLLKT--LP---DLPPSLEALNVRDN-YLTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp SCCSS--CC---SCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred CcCCc--cc---ccccccCEEECCCC-cccccCcccCcCCEEECcCC
Confidence 55532 11 12355666666443 23334444455666666655
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.45 E-value=5.9e-14 Score=139.75 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=93.4
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.+|.++....++|..+. +++++|+|++|.+.. + ..+.++++|++|+|++|.++.. .+..++++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCc
Confidence 35566666666776543 567777777776655 2 3466777777777777765321 12335567777777777764
Q ss_pred CCCccC---cCCCCCccEEEecccCC-Ccc-eeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344 95 GLKSLQ---LLGLNKLKEIKLDSNRC-GLE-RVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY 167 (357)
Q Consensus 95 ~l~~l~---l~~~~~L~~L~l~~c~~-~l~-~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~ 167 (357)
++.+. +.++++|++|++++|.. ... .....+++|++|+++++.... ...+.++++|++|++++|.+++....
T Consensus 85 -l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 -LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred -cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 33322 44556777777777652 111 111235677777776643221 12345667777777777766432111
Q ss_pred HH-hccCCccceeecccc
Q 018344 168 NQ-ISELPFLEYLALHYC 184 (357)
Q Consensus 168 ~l-~~~~~~L~~L~l~~~ 184 (357)
.+ ...+++|+.|+++++
T Consensus 164 ~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSN 181 (680)
T ss_dssp HHGGGTTCEESEEECTTC
T ss_pred HhhccccccccEEECCCC
Confidence 11 224567777777654
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.44 E-value=1.5e-13 Score=133.76 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=49.1
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.+|++++....+|..+. ++|++|++++|.+.. |..+.++++|++|+|++|.++.. .+..+.++++|++|++++|.
T Consensus 35 ~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSC
T ss_pred EEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCc
Confidence 34555555556665443 456666666665544 23455666666666666654321 12223455556666665554
Q ss_pred CCCccCcCCCCCccEEEecccC
Q 018344 95 GLKSLQLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 95 ~l~~l~l~~~~~L~~L~l~~c~ 116 (357)
++.++...+++|++|++++|.
T Consensus 112 -l~~lp~~~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 112 -LQNISCCPMASLRHLDLSFND 132 (562)
T ss_dssp -CCEECSCCCTTCSEEECCSSC
T ss_pred -CCccCccccccCCEEECCCCC
Confidence 333332234555555555554
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=129.83 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=107.6
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
++........+|..+. ++++.|+|++|.+.. +..+.++++|++|+|++|.+.... ...+.++++|++|+|++|.
T Consensus 48 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~- 123 (440)
T 3zyj_A 48 VICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR- 123 (440)
T ss_dssp EECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-
T ss_pred EEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-
Confidence 4455556677777654 567888888877655 456777888888888887663211 2235567788888887764
Q ss_pred CCcc---CcCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeec-CCCc--eeeccccccccceeecccccCHHHHH
Q 018344 96 LKSL---QLLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVY-LEPC--EVNVSSCKNLTHLRLDGLSITDKWLY 167 (357)
Q Consensus 96 l~~l---~l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~-~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~ 167 (357)
++.+ .+.++++|++|++++|... +.. ....+++|++|++++. .... ...+.++++|+.|++++|.+++ ++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~ 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc
Confidence 3333 2345577777777777521 111 1123567777777652 2211 1235566677777777776643 12
Q ss_pred HHhccCCccceeeccccccccccc-c---ccccccEEEcccccccccc
Q 018344 168 NQISELPFLEYLALHYCMKLRSIN-I---SSPRLKELVFERCEELVEF 211 (357)
Q Consensus 168 ~l~~~~~~L~~L~l~~~~~l~~l~-~---~~~~L~~L~l~~c~~L~~~ 211 (357)
.+..+++|+.|++++|. +..++ . ..++|++|+++++ .++.+
T Consensus 202 -~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 246 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-QIQVI 246 (440)
T ss_dssp -CCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred -ccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCC-ceeEE
Confidence 24566677777776542 32221 1 1456666666666 44443
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.44 E-value=7.6e-14 Score=138.94 Aligned_cols=105 Identities=17% Similarity=0.077 Sum_probs=48.5
Q ss_pred CCCCccEEeeecCCCCC--ccCcCCCCCccEEEecccCCCcceeE------eecceeeEEEEeecCCCc--eeecccccc
Q 018344 81 GCPLIEYININNCPGLK--SLQLLGLNKLKEIKLDSNRCGLERVY------INGVNVHSVDIKVYLEPC--EVNVSSCKN 150 (357)
Q Consensus 81 ~~~~L~~L~L~~c~~l~--~l~l~~~~~L~~L~l~~c~~~l~~~~------~~~p~L~~L~l~~~~~~~--~~~~~~~~~ 150 (357)
.+++|++|++++|..-. .-.+.++++|++|++++|......+. ...++|+.++++++.+.. ...+.++++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 45555555555543211 11133445666666665541111111 011355555555533221 123445666
Q ss_pred ccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344 151 LTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM 185 (357)
Q Consensus 151 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 185 (357)
|+.|++++|.+++......+.++++|+.|++++|.
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 66666666665432222334556666666665443
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.43 E-value=7.2e-13 Score=125.64 Aligned_cols=199 Identities=16% Similarity=0.166 Sum_probs=146.9
Q ss_pred hCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 10 ~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
-..++.++ ++++....+| .+..+++|++|++++|.+... .+..+++|++|++++|.++.. + ++++++|++|+
T Consensus 41 l~~L~~L~--Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLD--CHNSSITDMT-GIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEE--CCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred cCCCCEEE--ccCCCcccCh-hhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCcee--e--cCCCCcCCEEE
Confidence 35566655 4566666777 688899999999999988773 378899999999999988542 2 67899999999
Q ss_pred eecCCCCCccCcCCCCCccEEEecccCCCcceeEe-ecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHH
Q 018344 90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN 168 (357)
Q Consensus 90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~ 168 (357)
+++|. ++.+++..+++|++|++++|.. ..+.+ .+++|++|+++++.......+..+++|+.|++++|.+++ ++
T Consensus 113 L~~N~-l~~l~~~~l~~L~~L~l~~N~l--~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l~- 186 (457)
T 3bz5_A 113 CDTNK-LTKLDVSQNPLLTYLNCARNTL--TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--LD- 186 (457)
T ss_dssp CCSSC-CSCCCCTTCTTCCEEECTTSCC--SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--CC-
T ss_pred CCCCc-CCeecCCCCCcCCEEECCCCcc--ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--ec-
Confidence 99985 5566777889999999999873 12222 477899999987532212357788999999999999865 33
Q ss_pred HhccCCccceeeccccccccccccc-cccccEEEcccccccccccc-cCCCcceEEeee
Q 018344 169 QISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEFEL-DTPNLSIFKCFN 225 (357)
Q Consensus 169 l~~~~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~~~i-~~~~L~~~~~~~ 225 (357)
++.+++|+.|+++++. +..++.. .++|+.|+++++ +++.+.+ ..++|+.+...+
T Consensus 187 -l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N-~l~~ip~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSV 242 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSS-CCSCCCCTTCTTCSEEECCS
T ss_pred -cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCC-cccccCccccCCCCEEEeeC
Confidence 7889999999997553 4444433 578999999988 6666543 234555555443
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.43 E-value=1.9e-13 Score=123.12 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=135.0
Q ss_pred CCeEEEEEecCCcce---ecCcccccCCCccEEEeec-cccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCc
Q 018344 12 NVKELKLDVGCCRIY---NLPQIVFYLKSIYVLDFEF-CKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLI 85 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~---~lP~~i~~~~~L~~L~Ls~-~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L 85 (357)
.|+++ +++++... .+|..+.++++|++|++++ +.+.. |..+.++++|++|+|++|.++.. ++..+..+++|
T Consensus 51 ~l~~L--~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNL--DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL 127 (313)
T ss_dssp CEEEE--EEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred eEEEE--ECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence 34444 45555444 7899999999999999995 66653 66889999999999999987422 34456789999
Q ss_pred cEEeeecCCCCCcc--CcCCCCCccEEEecccCCCccee---Eeecc-eeeEEEEeecCCC--ceeeccccccccceeec
Q 018344 86 EYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERV---YINGV-NVHSVDIKVYLEP--CEVNVSSCKNLTHLRLD 157 (357)
Q Consensus 86 ~~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~~---~~~~p-~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~ 157 (357)
++|++++|..-..+ .+..+++|++|++++|. ....+ ....+ +|++|+++++.+. ....+..++ |+.|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999998633222 34567899999999987 22122 12344 8899998874322 113455555 9999999
Q ss_pred ccccCHHHHHHHhccCCccceeecccccccccccc--ccccccEEEcccccccc
Q 018344 158 GLSITDKWLYNQISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERCEELV 209 (357)
Q Consensus 158 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~L~ 209 (357)
+|.+++. .+..+..+++|+.|+++++.....++. ..++|++|+++++ .++
T Consensus 206 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~ 257 (313)
T 1ogq_A 206 RNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIY 257 (313)
T ss_dssp SSEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCE
T ss_pred CCcccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC-ccc
Confidence 9988542 445678899999999987654333332 2578999999888 454
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.42 E-value=9.1e-14 Score=136.50 Aligned_cols=174 Identities=13% Similarity=0.160 Sum_probs=126.3
Q ss_pred cccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEE
Q 018344 32 VFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK 111 (357)
Q Consensus 32 i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~ 111 (357)
+..+++|+.|+++++.+.....+..+++|++|++++|.+ ..++.+ .+++|++|++++|.......+..+++|++|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--KQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--SSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--cccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 667889999999998876622788899999999999977 233433 7899999999999777666777789999999
Q ss_pred ecccCC-Cc---ceeEeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccc
Q 018344 112 LDSNRC-GL---ERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK 186 (357)
Q Consensus 112 l~~c~~-~l---~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 186 (357)
+++|.. .. ......+++|++|+++++... ....+.++++|+.|++++|.+.+......+.++++|+.|++++|..
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 998862 11 111224678999998875432 1145677888999999998875532224567889999999987764
Q ss_pred cccccc---ccccccEEEccccccccc
Q 018344 187 LRSINI---SSPRLKELVFERCEELVE 210 (357)
Q Consensus 187 l~~l~~---~~~~L~~L~l~~c~~L~~ 210 (357)
....+. ..++|++|++++| .+++
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n-~l~~ 462 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGN-SFKD 462 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTC-EEGG
T ss_pred CccchhhhcCCCCCCEEECCCC-cCCC
Confidence 433332 2578888988888 4443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.42 E-value=1.9e-13 Score=129.48 Aligned_cols=193 Identities=16% Similarity=0.099 Sum_probs=138.8
Q ss_pred CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.++.|+ ++++....++ ..+.++++|++|+|++|.+.. +..+.++++|++|+|++|.++.. ....+..+++|++|
T Consensus 76 ~l~~L~--L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 76 NTRYLN--LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLREL 152 (452)
T ss_dssp TCSEEE--CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEE
T ss_pred CccEEE--CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEE
Confidence 455554 5666666664 556779999999999998765 46788999999999999977421 12335678999999
Q ss_pred eeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEe----ecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344 89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (357)
Q Consensus 89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i 161 (357)
++++|. ++.+ .+.++++|++|++++|. .+..+.. .+++|++|+++++.+.....+..+++|+.|++++|.+
T Consensus 153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNP-IESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred ECCCCC-cceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence 999986 3433 34466899999999876 5554422 4678999999886543223567788899999999988
Q ss_pred CHHHHHHHhccCCccceeecccccccccccc----ccccccEEEccccccccccc
Q 018344 162 TDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE 212 (357)
Q Consensus 162 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~~ 212 (357)
++. .+..+.++++|+.|+++++. +..+.. ..++|+.|+++++ +++.+.
T Consensus 231 ~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 231 PEI-RPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp SEE-CGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred ccc-CcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence 542 24457889999999997654 333322 1578999999988 666543
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.42 E-value=3.7e-13 Score=119.51 Aligned_cols=190 Identities=17% Similarity=0.130 Sum_probs=132.6
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.++.+......+|..+ .++|++|+++++.+.. +..+.++++|++|++++|.++.. .+..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCC
Confidence 4566666777888755 4689999999988766 34688999999999999977432 13346678999999999987
Q ss_pred CCCcc---CcCCCCCccEEEecccCC-Cc-ceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344 95 GLKSL---QLLGLNKLKEIKLDSNRC-GL-ERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY 167 (357)
Q Consensus 95 ~l~~l---~l~~~~~L~~L~l~~c~~-~l-~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~ 167 (357)
.++.+ .+.++++|++|++++|.. .. ......+++|++|++++..+.. ...+..+++|+.|++++|.+++- ..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~ 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PE 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CH
Confidence 55544 345668999999999872 11 1112246789999998854321 12366788899999999887531 22
Q ss_pred HHhccCCccceeeccccccccccccc---cccccEEEcccccccccc
Q 018344 168 NQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEF 211 (357)
Q Consensus 168 ~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~ 211 (357)
..+.++++|+.|+++++.-....+.. .++|+.|+++++ .++++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 216 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSAL 216 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcC
Confidence 34677899999999766432221222 567888988888 55543
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.42 E-value=7.8e-14 Score=135.83 Aligned_cols=247 Identities=11% Similarity=0.048 Sum_probs=145.9
Q ss_pred ecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCC
Q 018344 27 NLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLN 105 (357)
Q Consensus 27 ~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~ 105 (357)
.+|..+..+++|+.|++++|.+.. |..+..+ +|++|++++|.+. .++. ..+++|++|++++|..........++
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccccccCC
Confidence 345666678888888888887665 5566667 8888888888764 1221 46788888888887654444445668
Q ss_pred CccEEEecccCCCccee-----EeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCcccee
Q 018344 106 KLKEIKLDSNRCGLERV-----YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL 179 (357)
Q Consensus 106 ~L~~L~l~~c~~~l~~~-----~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 179 (357)
+|++|++++|.. .... ...+++|++|+++++... ....+.++++|++|+++++.+.+......+.++++|+.|
T Consensus 348 ~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCcc-CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 888888888762 2111 124678888888775432 113366778888888888877543222346778888888
Q ss_pred eccccccccccccc---cccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEEEEEecCCChHHHHH
Q 018344 180 ALHYCMKLRSINIS---SPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLK 256 (357)
Q Consensus 180 ~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~ 256 (357)
++++|......+.. .++|+.|++++| .+++..+ |........|+.++++.+.....
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--------------p~~~~~l~~L~~L~l~~n~l~~~------ 485 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFL--------------PDIFTELRNLTFLDLSQCQLEQL------ 485 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEE--------------CSCCTTCTTCCEEECTTSCCCEE------
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCC-cCccccc--------------hhhhhcccCCCEEECCCCccccC------
Confidence 88766543333322 567888888877 3332100 10011123444444421110000
Q ss_pred HHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEec
Q 018344 257 FIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS 306 (357)
Q Consensus 257 l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~ 306 (357)
....+.++++++.|.+..+... .+++. ....+++|++|++.+++
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~--~~~~~----~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLK--SVPDG----IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCS--CCCTT----TTTTCTTCCEEECCSSC
T ss_pred ChhhhhcccCCCEEeCCCCcCC--CCCHH----HhhcccCCcEEEecCCc
Confidence 0123556788888877655322 22221 11235778888888554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.41 E-value=7.7e-14 Score=125.21 Aligned_cols=205 Identities=19% Similarity=0.257 Sum_probs=130.1
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC-CC-CccCCCCCceEEeeccccCHHH-HHHHHcCCCCccEEeeecC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PR-STVTLFSLRKLCLSFVHVDDEV-IRDMVAGCPLIEYININNC 93 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~-~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~~~~L~~L~L~~c 93 (357)
.++.+......+|..+. ++|++|++++|.+.. |. .+.++++|++|+|++|.++... .+.....+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 35566666778887654 589999999987766 43 4678899999999988774211 1122346888999999887
Q ss_pred CCCCcc--CcCCCCCccEEEecccCC-Ccce--eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHH
Q 018344 94 PGLKSL--QLLGLNKLKEIKLDSNRC-GLER--VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWL 166 (357)
Q Consensus 94 ~~l~~l--~l~~~~~L~~L~l~~c~~-~l~~--~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~ 166 (357)
.. ..+ .+.++++|++|++++|.. .... .....++|++|++++..+.. ...+.++++|++|++++|.+++...
T Consensus 89 ~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 53 222 234567888888888762 1111 12246788888887743321 1235667788888888887755344
Q ss_pred HHHhccCCccceeecccccccccc-cc---ccccccEEEccccccccccc---c-cCCCcceEEeeee
Q 018344 167 YNQISELPFLEYLALHYCMKLRSI-NI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNY 226 (357)
Q Consensus 167 ~~l~~~~~~L~~L~l~~~~~l~~l-~~---~~~~L~~L~l~~c~~L~~~~---i-~~~~L~~~~~~~~ 226 (357)
+..+..+++|+.|++++|. +..+ +. ..++|++|+++++ .++++. + ..++|+.+...+.
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred hhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence 5566778888888887654 3333 21 1467888888877 455432 1 2345555555443
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=2.7e-14 Score=129.01 Aligned_cols=224 Identities=13% Similarity=0.057 Sum_probs=126.3
Q ss_pred CCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEe
Q 018344 35 LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL 112 (357)
Q Consensus 35 ~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l 112 (357)
+++|++|+|++|.+.. |..+.++++|++|+|++|.++.. .. +..+++|++|++++|. ++.+. ..++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LD-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE--EE-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc--hh-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEEC
Confidence 5577777777776655 23566777777777777766321 11 5567777777777764 33222 2267777777
Q ss_pred cccCCCcceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccc
Q 018344 113 DSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI 190 (357)
Q Consensus 113 ~~c~~~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l 190 (357)
++|. .........++|++|+++++.+.. ...+..+++|+.|++++|.+++.....+...+++|+.|++++|. +..+
T Consensus 107 ~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp CSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred CCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence 7776 222222335677777777643321 23455667777777777776543233334567777777776543 3333
Q ss_pred ccc--cccccEEEccccccccccc---ccCCCcceEEeeeee----eeEecccccceeEEEEEEecCCChHHH-HHHHHH
Q 018344 191 NIS--SPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV----ESFSSNALALSQTLLCFISHPVDNEWY-LKFIKL 260 (357)
Q Consensus 191 ~~~--~~~L~~L~l~~c~~L~~~~---i~~~~L~~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~~-~~l~~~ 260 (357)
+.. .++|++|+++++ .++.+. ...++|+.+...+.. |........++.++++.+ .+. ..+..+
T Consensus 185 ~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N------~~~~~~~~~~ 257 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN------GFHCGTLRDF 257 (317)
T ss_dssp ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC------CCBHHHHHHH
T ss_pred ccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC------CccCcCHHHH
Confidence 322 566777777776 455432 123445444443332 110112345666655321 111 245667
Q ss_pred HhhcccccceeEE
Q 018344 261 LARFNLCSNVLNL 273 (357)
Q Consensus 261 l~~l~~lk~L~l~ 273 (357)
+..++.++.|.+.
T Consensus 258 ~~~~~~L~~l~l~ 270 (317)
T 3o53_A 258 FSKNQRVQTVAKQ 270 (317)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhccccceEEECC
Confidence 7778888877765
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=1.6e-12 Score=126.53 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=83.2
Q ss_pred cccccccceeecccccCHHHHHHHhccCCccceeeccccccccccc---c---ccccccEEEccccccccc-cc----cc
Q 018344 146 SSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN---I---SSPRLKELVFERCEELVE-FE----LD 214 (357)
Q Consensus 146 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~---~---~~~~L~~L~l~~c~~L~~-~~----i~ 214 (357)
..+++|++|++++|.+++. .+..+.++++|+.|+++++ .+..++ . ..++|+.|+++++ .++. +. -.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcC
Confidence 5667899999999988652 3455688999999999765 343332 1 2578999999988 4554 32 12
Q ss_pred CCCcceEEeeeee--e-eEecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCC
Q 018344 215 TPNLSIFKCFNYV--E-SFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILC 291 (357)
Q Consensus 215 ~~~L~~~~~~~~~--~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~ 291 (357)
.++|+.+...+.. . .+..-+..++.++++.+.... +..-+..+++++.|.+...... .+|+. ..
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~-------ip~~~~~l~~L~~L~L~~N~l~--~l~~~----~~ 493 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-------IPKDVTHLQALQELNVASNQLK--SVPDG----VF 493 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC-------CCTTTTSSCCCSEEECCSSCCC--CCCTT----ST
T ss_pred cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc-------cChhhcCCCCCCEEECCCCCCC--CCCHH----HH
Confidence 3455555444332 0 000001466666664322111 1122336778888777654332 34443 12
Q ss_pred CCCCCcceEEEEEec
Q 018344 292 PPLTYHKHVSFSVLS 306 (357)
Q Consensus 292 p~~~~L~~L~l~~~~ 306 (357)
..+++|++|.+.+++
T Consensus 494 ~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 494 DRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCTTCCCEECCSCC
T ss_pred hcCCCCCEEEecCCC
Confidence 345778888888654
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.41 E-value=2.9e-13 Score=120.20 Aligned_cols=190 Identities=16% Similarity=0.097 Sum_probs=136.1
Q ss_pred CCCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc-cCHHHHHHHHcCCCCcc
Q 018344 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIE 86 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~ 86 (357)
..+++++ ++++....+|. .+..+++|++|++++|.+.. |..+.++++|++|++++|. +... .+..+..+++|+
T Consensus 32 ~~l~~L~--l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIF--LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH 108 (285)
T ss_dssp TTCSEEE--CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred CCceEEE--eeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCC
Confidence 4556555 56666777775 46679999999999997765 5678899999999999996 4321 133466789999
Q ss_pred EEeeecCCCCCc--cCcCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccc
Q 018344 87 YININNCPGLKS--LQLLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLS 160 (357)
Q Consensus 87 ~L~L~~c~~l~~--l~l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~ 160 (357)
+|++++|..-.. -.+.++++|++|++++|... ... ....+++|++|+++++.+.. ...+.++++|+.|++++|.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 999999863222 12456789999999998731 111 12247899999999865431 1236788999999999998
Q ss_pred cCHHHHHHHhccCCccceeecccccccccccc----ccccccEEEcccc
Q 018344 161 ITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC 205 (357)
Q Consensus 161 i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c 205 (357)
+++. .+..+.++++|+.|+++++ .+..++. ..++|+.|+++++
T Consensus 189 l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 189 VAHV-HPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCEE-CTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cccc-CHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 8652 2445788999999999765 3444432 1567888888776
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=5.8e-13 Score=120.82 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=121.0
Q ss_pred CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.++. ++++++....+|. .+.++++|++|++++|.+.. |..+.++++|++|++++|.++. ++. ...++|++|
T Consensus 53 ~l~~--L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L~~L 126 (330)
T 1xku_A 53 DTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQEL 126 (330)
T ss_dssp TCCE--EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCEE
T ss_pred CCeE--EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccccEE
Confidence 4454 4567777777876 56779999999999988765 5678899999999999997642 111 123678888
Q ss_pred eeecCCCCCccC---cCCCCCccEEEecccCCC---cc-eeEeecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344 89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRCG---LE-RVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (357)
Q Consensus 89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~---l~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i 161 (357)
++++|. ++.+. +.++++|++|++++|... .. .....+++|++|++++..+.. ....-.++|++|++++|.+
T Consensus 127 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~l 204 (330)
T 1xku_A 127 RVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKI 204 (330)
T ss_dssp ECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSCC
T ss_pred ECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccccccCCEEECCCCcC
Confidence 888875 33322 345678888888877621 11 111236778888887743321 0011126688888888777
Q ss_pred CHHHHHHHhccCCccceeecccccccccccc----ccccccEEEcccccccccc
Q 018344 162 TDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEF 211 (357)
Q Consensus 162 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~ 211 (357)
++. .+..+.++++|+.|+++++. +..++. ..++|++|++++| .++.+
T Consensus 205 ~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 255 (330)
T 1xku_A 205 TKV-DAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKV 255 (330)
T ss_dssp CEE-CTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSC
T ss_pred Ccc-CHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccC
Confidence 542 13346677888888886553 322221 1467888888877 55544
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=1.1e-12 Score=117.86 Aligned_cols=183 Identities=20% Similarity=0.201 Sum_probs=132.7
Q ss_pred ccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEE
Q 018344 33 FYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIK 111 (357)
Q Consensus 33 ~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~ 111 (357)
..+++|++|++++|.+.....+..+++|++|++++|.+... +. +..+++|++|++++|. ++.+ .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEE
Confidence 35779999999999887633788999999999999988432 22 7889999999999987 4433 355678999999
Q ss_pred ecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccc
Q 018344 112 LDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI 190 (357)
Q Consensus 112 l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l 190 (357)
+++|.. .... ...+++|++|+++++.+.....+..+++|+.|++++|.+++ ++. +..+++|+.|++++|. +..+
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~ 188 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNK-ISDI 188 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCc-cCcC
Confidence 999973 2222 23478999999988654322237788999999999998865 222 7889999999997654 4444
Q ss_pred cc--ccccccEEEccccccccccc--ccCCCcceEEeee
Q 018344 191 NI--SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFN 225 (357)
Q Consensus 191 ~~--~~~~L~~L~l~~c~~L~~~~--i~~~~L~~~~~~~ 225 (357)
+. ..++|++|++++| .++++. -..++|+.+...+
T Consensus 189 ~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 189 SPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN 226 (308)
T ss_dssp GGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred hhhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccC
Confidence 32 2678999999998 566543 1233444444433
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.39 E-value=5.1e-13 Score=117.71 Aligned_cols=183 Identities=19% Similarity=0.193 Sum_probs=112.1
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.++.++.....+|..+. +++++|+++++.+.. +..+.++++|++|+|++|.++.- ....+..+++|++|++++|.
T Consensus 20 ~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC
T ss_pred EEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc
Confidence 35667777788887664 689999999998766 34788999999999999977421 12335678999999999986
Q ss_pred CCCccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344 95 GLKSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY 167 (357)
Q Consensus 95 ~l~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~ 167 (357)
++.+. +.++++|++|++++|.. .... ....+++|++|+++++.+.. ...+..+++|+.|++++|.+++- .+
T Consensus 97 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~ 174 (270)
T 2o6q_A 97 -LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PE 174 (270)
T ss_dssp -CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CT
T ss_pred -CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-Ch
Confidence 44333 34568899999998862 1111 11235566666666543221 11245556666666666655331 11
Q ss_pred HHhccCCccceeeccccccccccccc----cccccEEEcccc
Q 018344 168 NQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERC 205 (357)
Q Consensus 168 ~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c 205 (357)
..+.++++|+.|+++++ .+..++.. .++|+.|+++++
T Consensus 175 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 23455666666666544 23333221 344555555544
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.39 E-value=4e-13 Score=121.07 Aligned_cols=191 Identities=14% Similarity=0.085 Sum_probs=136.4
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
..++.|++.-...-...+|..+.++++|++|++++|.+.. |..+.++++|++|+|++|.+... ++..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence 4667777642122233789999999999999999998863 66789999999999999987422 34456789999999
Q ss_pred eeecCCCCCcc--CcCCCC-CccEEEecccCCCccee--EeecceeeEEEEeecCCC--ceeeccccccccceeeccccc
Q 018344 89 NINNCPGLKSL--QLLGLN-KLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSI 161 (357)
Q Consensus 89 ~L~~c~~l~~l--~l~~~~-~L~~L~l~~c~~~l~~~--~~~~p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~~~~i 161 (357)
++++|..-..+ .+..++ +|++|++++|. ....+ .+....|+.|+++++.+. ....+.++++|+.|++++|.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 99998742122 344555 89999999987 22111 122224899999874322 124567889999999999998
Q ss_pred CHHHHHHHhccCCccceeeccccccccccccc---cccccEEEcccc
Q 018344 162 TDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERC 205 (357)
Q Consensus 162 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c 205 (357)
++.. + .+..+++|+.|+++++.....++.. .++|++|+++++
T Consensus 234 ~~~~-~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 234 AFDL-G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CCBG-G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred eeec-C-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 6432 2 2678899999999877644444433 567888888887
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.38 E-value=5.8e-13 Score=121.97 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=126.0
Q ss_pred CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.+++++ ++++....+|. .+.++++|++|++++|.+.. |..+.++++|++|+|++|.++.- ....+.++++|++|
T Consensus 53 ~L~~L~--l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 129 (353)
T 2z80_A 53 AVKSLD--LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFL 129 (353)
T ss_dssp TCCEEE--CTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEE
T ss_pred cCcEEE--CCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEE
Confidence 455554 57777778887 67789999999999998765 45688999999999999987432 23446789999999
Q ss_pred eeecCCCCCccC----cCCCCCccEEEecccCCCccee----EeecceeeEEEEeecCCCc--eeeccccccccceeecc
Q 018344 89 NINNCPGLKSLQ----LLGLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDG 158 (357)
Q Consensus 89 ~L~~c~~l~~l~----l~~~~~L~~L~l~~c~~~l~~~----~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~ 158 (357)
++++|. ++.+. +.++++|++|++++|. ....+ ...+++|++|+++++.+.. ...+.++++|++|++++
T Consensus 130 ~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 130 NLLGNP-YKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp ECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred ECCCCC-CcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 999986 33332 4467899999999985 33333 2247899999999865431 14567889999999999
Q ss_pred cccCHHHHHHHhccCCccceeeccccc
Q 018344 159 LSITDKWLYNQISELPFLEYLALHYCM 185 (357)
Q Consensus 159 ~~i~~~~~~~l~~~~~~L~~L~l~~~~ 185 (357)
+.++. .....+..+++|+.|+++++.
T Consensus 208 n~l~~-~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 208 KQHIL-LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp SCSTT-HHHHHHHHTTTEEEEEEESCB
T ss_pred Ccccc-chhhhhhhcccccEEECCCCc
Confidence 98843 233456678999999997654
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=2.4e-13 Score=129.98 Aligned_cols=233 Identities=14% Similarity=0.082 Sum_probs=136.9
Q ss_pred eecCcccccCC----CccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc
Q 018344 26 YNLPQIVFYLK----SIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL 99 (357)
Q Consensus 26 ~~lP~~i~~~~----~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l 99 (357)
..+|..+..+. +|++|+|++|.+.. |..+.++++|++|+|++|.++... + +..+++|++|++++|. ++.+
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l 95 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQEL 95 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCC
Confidence 34555554433 78888888887765 346778888888888888763211 1 6678888888888874 3333
Q ss_pred CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHHHHhccCCccc
Q 018344 100 QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLE 177 (357)
Q Consensus 100 ~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~ 177 (357)
.. .++|++|++++|. .........++|++|+++++.+.. ...++++++|+.|++++|.+++.....+...+++|+
T Consensus 96 ~~--~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 96 LV--GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp EE--CTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CC--CCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 22 2678888888876 222223346778888887754321 235667778888888888776533333444678888
Q ss_pred eeeccccccccccccc--cccccEEEccccccccccc---ccCCCcceEEeeeee----eeEecccccceeEEEEEEecC
Q 018344 178 YLALHYCMKLRSINIS--SPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV----ESFSSNALALSQTLLCFISHP 248 (357)
Q Consensus 178 ~L~l~~~~~l~~l~~~--~~~L~~L~l~~c~~L~~~~---i~~~~L~~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~ 248 (357)
.|++++|. +..++.. .++|+.|+++++ .++.+. ...++|..+...+.. |........+..++++.+.
T Consensus 173 ~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~-- 248 (487)
T 3oja_A 173 HLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG-- 248 (487)
T ss_dssp EEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC--
T ss_pred EEecCCCc-cccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC--
Confidence 88886654 3333322 567888888877 555432 123455555544432 1111123455555542211
Q ss_pred CChHHHHHHHHHHhhcccccceeE
Q 018344 249 VDNEWYLKFIKLLARFNLCSNVLN 272 (357)
Q Consensus 249 ~~~~~~~~l~~~l~~l~~lk~L~l 272 (357)
.. ...+..++..++.++.+.+
T Consensus 249 l~---c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 249 FH---CGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp BC---HHHHHHHHTTCHHHHHHHH
T ss_pred Cc---CcchHHHHHhCCCCcEEec
Confidence 11 0234555666666665554
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=5.1e-13 Score=126.15 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=133.7
Q ss_pred CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.++.+ +++++....++ ..+.++++|++|+|++|.+.. +..+.++++|++|+|++|.++.- ....+..+++|++|
T Consensus 65 ~l~~L--~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 65 NTRLL--NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKEL 141 (440)
T ss_dssp TCSEE--ECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEE
T ss_pred CCcEE--EccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCcee
Confidence 34554 45666666666 456678999999999987765 35678899999999999977421 12245678999999
Q ss_pred eeecCCCCCcc---CcCCCCCccEEEecccCCCcceeE----eecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344 89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (357)
Q Consensus 89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i 161 (357)
++++|. ++.+ .+.++++|++|++++|. .+..+. ..+++|++|+++++.+.....+..+++|+.|++++|.+
T Consensus 142 ~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNP-IESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred eCCCCc-ccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 999876 3333 34566889999998876 444432 24678888988885443223567778899999998887
Q ss_pred CHHHHHHHhccCCccceeecccccccccccc----ccccccEEEccccccccccc
Q 018344 162 TDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE 212 (357)
Q Consensus 162 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~~ 212 (357)
++. .+..+.++++|+.|+++++. +..++. ..++|+.|+++++ +++.+.
T Consensus 220 ~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 271 (440)
T 3zyj_A 220 SAI-RPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLP 271 (440)
T ss_dssp CEE-CTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCC
T ss_pred Ccc-ChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccC
Confidence 542 23456788899999986553 333322 2577888888887 666543
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=3.6e-13 Score=127.58 Aligned_cols=177 Identities=20% Similarity=0.206 Sum_probs=108.5
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
..+++++ ++++....+|.. .++|++|++++|.+.. |. .+++|++|++++|.++. ++ ...++|++|+
T Consensus 71 ~~l~~L~--l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~--l~---~~~~~L~~L~ 137 (454)
T 1jl5_A 71 RQAHELE--LNNLGLSSLPEL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA--LS---DLPPLLEYLG 137 (454)
T ss_dssp HTCSEEE--CTTSCCSCCCSC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC--CC---SCCTTCCEEE
T ss_pred cCCCEEE--ecCCccccCCCC---cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCc--cc---CCCCCCCEEE
Confidence 3455554 567667778863 3789999999998876 43 35899999999997742 11 1226899999
Q ss_pred eecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH-----
Q 018344 90 INNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD----- 163 (357)
Q Consensus 90 L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~----- 163 (357)
+++|.. +.+ .+.++++|++|++++|.. ..+....++|++|+++++.+.....++++++|+.|++++|.+++
T Consensus 138 L~~n~l-~~lp~~~~l~~L~~L~l~~N~l--~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~ 214 (454)
T 1jl5_A 138 VSNNQL-EKLPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP 214 (454)
T ss_dssp CCSSCC-SSCCCCTTCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC
T ss_pred CcCCCC-CCCcccCCCCCCCEEECCCCcC--cccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc
Confidence 999863 333 455668899999998862 12222245788888877433211245566666666666665532
Q ss_pred -------------HHHHHHhccCCccceeeccccccccccccccccccEEEcccc
Q 018344 164 -------------KWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERC 205 (357)
Q Consensus 164 -------------~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c 205 (357)
..++. +..+++|+.|+++++ .+..++...++|+.|+++++
T Consensus 215 ~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDN 267 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSS
T ss_pred CcccEEECcCCcCCcccc-cCCCCCCCEEECCCC-cCCcccccccccCEEECCCC
Confidence 01111 344555555555432 23333333455666666655
No 68
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=1.4e-12 Score=120.91 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=63.5
Q ss_pred cceecCcccccCCCccEEEeeccccCC--C----CCccCCCCCceEEeeccccC------HHH---HHHHHcCCCCccEE
Q 018344 24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--P----RSTVTLFSLRKLCLSFVHVD------DEV---IRDMVAGCPLIEYI 88 (357)
Q Consensus 24 ~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p----~~~~~l~~L~~L~L~~~~~~------~~~---l~~l~~~~~~L~~L 88 (357)
....++..+..+++|++|+|++|.+.. + ..+..+++|++|+|++|.+. ... +...+..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 345677777788899999999987654 1 13567899999999887442 112 23334678999999
Q ss_pred eeecCCCCC----cc--CcCCCCCccEEEecccC
Q 018344 89 NINNCPGLK----SL--QLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 89 ~L~~c~~l~----~l--~l~~~~~L~~L~l~~c~ 116 (357)
+|++|..-. .+ .+..+++|++|++++|.
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 998876322 11 22345788888888887
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.34 E-value=2.7e-13 Score=121.59 Aligned_cols=193 Identities=17% Similarity=0.152 Sum_probs=137.2
Q ss_pred CCCeEEEEEecCCcceecCccc-ccCCCccEEEeeccccCC----CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCc
Q 018344 11 SNVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP----PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLI 85 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i-~~~~~L~~L~Ls~~~~~~----p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L 85 (357)
..+++++ ++++....+|..+ .++++|++|++++|.+.. +..+..+++|++|++++|.+.. ++..+..+++|
T Consensus 28 ~~l~~L~--L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLE--LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEE--CCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 3566555 5667777899875 579999999999987653 2355679999999999997632 22335679999
Q ss_pred cEEeeecCCCCCc---cCcCCCCCccEEEecccCCC--cceeEeecceeeEEEEeecCCC---ceeeccccccccceeec
Q 018344 86 EYININNCPGLKS---LQLLGLNKLKEIKLDSNRCG--LERVYINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLD 157 (357)
Q Consensus 86 ~~L~L~~c~~l~~---l~l~~~~~L~~L~l~~c~~~--l~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~L~~L~L~ 157 (357)
++|++++|..-.. -.+..+++|++|++++|... .......+++|++|++++..+. ....+..+++|+.|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 9999999763211 13456689999999998721 1111224689999999875332 12457788999999999
Q ss_pred ccccCHHHHHHHhccCCccceeecccccccccccc----ccccccEEEccccccccc
Q 018344 158 GLSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVE 210 (357)
Q Consensus 158 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~ 210 (357)
+|.+++. .+..+..+++|+.|+++++. +..++. ..++|+.|+++++ .++.
T Consensus 184 ~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 237 (306)
T 2z66_A 184 QCQLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN-HIMT 237 (306)
T ss_dssp TSCCCEE-CTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS-CCCB
T ss_pred CCCcCCc-CHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCC-CCcc
Confidence 9988542 24456789999999997664 333332 1578999999998 5554
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=2.5e-12 Score=114.62 Aligned_cols=164 Identities=18% Similarity=0.109 Sum_probs=76.9
Q ss_pred CCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEecc
Q 018344 35 LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDS 114 (357)
Q Consensus 35 ~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~ 114 (357)
+++|+.|++++|.+.....+..+++|++|++++|.++.. .. +..+++|++|++++|..-..-.+..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCC
Confidence 445555555555544422345555555555555554221 11 445555555555555421111233345555555555
Q ss_pred cCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccccccccc-
Q 018344 115 NRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS- 193 (357)
Q Consensus 115 c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~- 193 (357)
|...-......+++|++|+++++.+.....+..+++|+.|++++|.+++.. . +..+++|+.|++++| .+..++..
T Consensus 122 n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N-~i~~l~~l~ 197 (291)
T 1h6t_A 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKN-HISDLRALA 197 (291)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCCBCGGGT
T ss_pred CcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCC-cCCCChhhc
Confidence 541100111123455555554433221123455566666666666664321 1 556666666666543 33333221
Q ss_pred -cccccEEEcccc
Q 018344 194 -SPRLKELVFERC 205 (357)
Q Consensus 194 -~~~L~~L~l~~c 205 (357)
.++|+.|+++++
T Consensus 198 ~l~~L~~L~l~~n 210 (291)
T 1h6t_A 198 GLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCSEEEEEEE
T ss_pred cCCCCCEEECcCC
Confidence 345556655555
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.32 E-value=1.3e-11 Score=120.93 Aligned_cols=132 Identities=14% Similarity=0.051 Sum_probs=80.7
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
..++.|+ ++++....+|. .+++|++|+|++|.+.. |. .+++|++|+|++|.++. ++ ..+++|+.|+
T Consensus 61 ~~L~~L~--L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l~---~~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLV--IPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LP---ALPSGLCKLW 127 (622)
T ss_dssp TTCSEEE--ECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC--CC---CCCTTCCEEE
T ss_pred CCCcEEE--ecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC--CC---CCCCCcCEEE
Confidence 3556555 46666778887 56899999999998776 43 78999999999997632 11 1567888888
Q ss_pred eecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344 90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI 161 (357)
Q Consensus 90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i 161 (357)
+++|. ++.++. .+++|++|++++|.. ..+....++|+.|.++++.+.. .. ..+++|+.|++++|.+
T Consensus 128 L~~N~-l~~lp~-~l~~L~~L~Ls~N~l--~~l~~~~~~L~~L~L~~N~l~~-l~-~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 128 IFGNQ-LTSLPV-LPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLTS-LP-MLPSGLQELSVSDNQL 193 (622)
T ss_dssp CCSSC-CSCCCC-CCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCC
T ss_pred CCCCC-CCcCCC-CCCCCCEEECcCCcC--CCcCCccCCCCEEECCCCCCCC-Cc-ccCCCCcEEECCCCCC
Confidence 88875 444433 236788888877752 1111123455555555433221 00 2234455555555544
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=2.9e-12 Score=122.46 Aligned_cols=200 Identities=22% Similarity=0.153 Sum_probs=134.1
Q ss_pred CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
.++.|+ ++++....+| ..+..+++|++|+|++|.+.....+..+++|++|+|++|.++. +...++|++|++
T Consensus 35 ~L~~L~--Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELD--LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA 106 (487)
T ss_dssp GCCEEE--CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred CccEEE--eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence 455554 5666666676 4677899999999999988652238899999999999998742 224588999999
Q ss_pred ecCCCCCccCcCCCCCccEEEecccCC-Cccee-EeecceeeEEEEeecCCCc--eeecc-ccccccceeecccccCHHH
Q 018344 91 NNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERV-YINGVNVHSVDIKVYLEPC--EVNVS-SCKNLTHLRLDGLSITDKW 165 (357)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~-~~~~p~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~L~~~~i~~~~ 165 (357)
++|. +..+....+++|+.|++++|.. ..... ...+++|++|+++++.+.. ...+. .+++|+.|++++|.+++.
T Consensus 107 ~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp CSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred cCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 9976 4444444568899999988873 22222 2346788999888864431 12333 578889999988887542
Q ss_pred HHHHhccCCccceeeccccccccccccc---cccccEEEccccccccccc--c-cCCCcceEEeee
Q 018344 166 LYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE--L-DTPNLSIFKCFN 225 (357)
Q Consensus 166 ~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~--i-~~~~L~~~~~~~ 225 (357)
+ ....+++|+.|++++|. +..++.. .++|+.|+++++ .++.+. + ..++|..+...+
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 185 -K-GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp -E-CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred -c-ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCC
Confidence 1 12357888999987554 4334332 567888888887 566543 1 224455554443
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.31 E-value=3.1e-12 Score=113.99 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=124.1
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
..++.++ ++++....+|. +..+++|++|++++|.+.....+.++++|++|++++|.++. ++. +..+++|++|++
T Consensus 46 ~~L~~L~--l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQII--ANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEE--CTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred CcccEEE--ccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEEC
Confidence 4456554 45666667764 77899999999999988772238899999999999998843 233 678999999999
Q ss_pred ecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344 91 NNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (357)
Q Consensus 91 ~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l 169 (357)
++|.. +.+ .+..+++|+.|++++|...-......+++|++|+++++.+.....+..+++|+.|++++|.+++ ++ .
T Consensus 120 ~~n~i-~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~--l~-~ 195 (291)
T 1h6t_A 120 EHNGI-SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR-A 195 (291)
T ss_dssp TTSCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CG-G
T ss_pred CCCcC-CCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC--Ch-h
Confidence 99863 333 3456789999999999731112223478999999998654321237788999999999999865 23 2
Q ss_pred hccCCccceeeccccc
Q 018344 170 ISELPFLEYLALHYCM 185 (357)
Q Consensus 170 ~~~~~~L~~L~l~~~~ 185 (357)
+..+++|+.|++++++
T Consensus 196 l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GTTCTTCSEEEEEEEE
T ss_pred hccCCCCCEEECcCCc
Confidence 7889999999997654
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.31 E-value=1.6e-12 Score=114.81 Aligned_cols=188 Identities=21% Similarity=0.231 Sum_probs=124.6
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
++........+|..+. ++|++|++++|.+.. +..+.++++|++|++++|.+... ....+..+++|++|++++|.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~- 87 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP- 87 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC-
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCc-
Confidence 4555556677887654 579999999987765 34778899999999999876421 12235678899999999876
Q ss_pred CCcc---CcCCCCCccEEEecccCC-Cccee-EeecceeeEEEEeecCCC---ceeeccccccccceeecccccCH---H
Q 018344 96 LKSL---QLLGLNKLKEIKLDSNRC-GLERV-YINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSITD---K 164 (357)
Q Consensus 96 l~~l---~l~~~~~L~~L~l~~c~~-~l~~~-~~~~p~L~~L~l~~~~~~---~~~~~~~~~~L~~L~L~~~~i~~---~ 164 (357)
++.+ .+.++++|++|++++|.. ..... ...+++|++|+++++.+. ....+.++++|++|++++|.+++ .
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 3332 245668899999988863 22221 224678999999875432 12467788999999999998754 1
Q ss_pred HHHHHhccCCccc-eeeccccccccccccc---cccccEEEccccccccccc
Q 018344 165 WLYNQISELPFLE-YLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE 212 (357)
Q Consensus 165 ~~~~l~~~~~~L~-~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~ 212 (357)
.+. .+..++.|. .|+++++. +..++.. ..+|++|+++++ .++.+.
T Consensus 168 ~~~-~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~ 216 (276)
T 2z62_A 168 DLR-VLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVP 216 (276)
T ss_dssp GGH-HHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCC
T ss_pred Hhh-hhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCC-ceeecC
Confidence 221 123344443 78886543 3333322 347999999988 566543
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.30 E-value=3.2e-12 Score=110.36 Aligned_cols=179 Identities=15% Similarity=0.082 Sum_probs=108.0
Q ss_pred ceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccc-cCHHHHHHHHcCCCCccEEeeecCCCCCccC-
Q 018344 25 IYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQ- 100 (357)
Q Consensus 25 ~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~- 100 (357)
...+|. +. .+|++|+++++.+.. | ..+.++++|++|++++|. ++.- .+..+.++++|++|++++|..++.+.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 456666 32 378888888877655 3 356778888888888875 4311 01234677888888888744455543
Q ss_pred --cCCCCCccEEEecccCC-CcceeEeecceee---EEEEeec-CCCc--eeecccccccc-ceeecccccCHHHHHHHh
Q 018344 101 --LLGLNKLKEIKLDSNRC-GLERVYINGVNVH---SVDIKVY-LEPC--EVNVSSCKNLT-HLRLDGLSITDKWLYNQI 170 (357)
Q Consensus 101 --l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~---~L~l~~~-~~~~--~~~~~~~~~L~-~L~L~~~~i~~~~~~~l~ 170 (357)
+.++++|++|++++|.. .++. ....++|+ +|+++++ .+.. ...+.++++|+ .|++++|.++. .....+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhc
Confidence 33557788888887762 2222 12344555 7777765 4321 12356677788 88888777642 111223
Q ss_pred ccCCccceeeccccccccccccc----c-ccccEEEcccccccccc
Q 018344 171 SELPFLEYLALHYCMKLRSINIS----S-PRLKELVFERCEELVEF 211 (357)
Q Consensus 171 ~~~~~L~~L~l~~~~~l~~l~~~----~-~~L~~L~l~~c~~L~~~ 211 (357)
.. ++|+.|+++++..+..++.. . ++|+.|+++++ .++.+
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l 220 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTAL 220 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCC
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccC
Confidence 33 67888888766545554322 3 67777877776 45543
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.30 E-value=4.3e-12 Score=109.56 Aligned_cols=188 Identities=14% Similarity=0.095 Sum_probs=131.1
Q ss_pred CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccc-cCC--CCCccCCCCCceEEeec-cccCHHHHHHHHcCCCCcc
Q 018344 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCK-LEP--PRSTVTLFSLRKLCLSF-VHVDDEVIRDMVAGCPLIE 86 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~-~~~--p~~~~~l~~L~~L~L~~-~~~~~~~l~~l~~~~~~L~ 86 (357)
.++.+++ +++....+|. .+.++++|++|++++|. +.. +..+.++++|++|++++ |.++.- .+..+.++++|+
T Consensus 32 ~l~~L~l--~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKL--IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLK 108 (239)
T ss_dssp TCCEEEE--ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCC
T ss_pred cccEEEE--eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCC
Confidence 5666554 5666778887 45679999999999996 654 34788999999999998 766421 123456899999
Q ss_pred EEeeecCCCCCcc-CcCCCCCcc---EEEecccCCCcceeE----eecceee-EEEEeecCCCc-ee-ecccccccccee
Q 018344 87 YININNCPGLKSL-QLLGLNKLK---EIKLDSNRCGLERVY----INGVNVH-SVDIKVYLEPC-EV-NVSSCKNLTHLR 155 (357)
Q Consensus 87 ~L~L~~c~~l~~l-~l~~~~~L~---~L~l~~c~~~l~~~~----~~~p~L~-~L~l~~~~~~~-~~-~~~~~~~L~~L~ 155 (357)
+|++++|.. +.+ .+..+++|+ +|++++|. .+..+. ..+++|+ ++++++..+.. .. .+.. ++|+.|+
T Consensus 109 ~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 109 FLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred EEeCCCCCC-ccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 999999863 333 244556777 99999993 233332 2477899 99998854431 11 2333 7899999
Q ss_pred ecccc-cCHHHHHHHhccC-Cccceeeccccccccccccc-cccccEEEcccccc
Q 018344 156 LDGLS-ITDKWLYNQISEL-PFLEYLALHYCMKLRSINIS-SPRLKELVFERCEE 207 (357)
Q Consensus 156 L~~~~-i~~~~~~~l~~~~-~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~ 207 (357)
+++|. +++ ..+..+.++ ++|+.|+++++ .+..++.. .++|+.|.+.++..
T Consensus 186 L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 186 LNKNKYLTV-IDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CTTCTTCCE-ECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred cCCCCCccc-CCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 99994 743 123456778 99999999764 45555544 67889998887743
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.29 E-value=1.5e-12 Score=117.21 Aligned_cols=159 Identities=15% Similarity=0.065 Sum_probs=81.6
Q ss_pred cCCCccEEEeeccccCC--CCCc--cCCCCCceEEeeccccCHH--HHHHHHc-CCCCccEEeeecCCCCCcc---CcCC
Q 018344 34 YLKSIYVLDFEFCKLEP--PRST--VTLFSLRKLCLSFVHVDDE--VIRDMVA-GCPLIEYININNCPGLKSL---QLLG 103 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~--p~~~--~~l~~L~~L~L~~~~~~~~--~l~~l~~-~~~~L~~L~L~~c~~l~~l---~l~~ 103 (357)
++++|++|+|++|.+.. |..+ ..+++|++|+|++|.++.. .+..+.. ..++|++|++++|.. ..+ .+.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhcc
Confidence 56677777777776653 4433 6677777777777766332 1111111 126777777777652 222 2344
Q ss_pred CCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH--HHHHHHhccCCccceeec
Q 018344 104 LNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLAL 181 (357)
Q Consensus 104 ~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~l 181 (357)
+++|++|++++|. ....+. .+....+.++++|++|++++|.+++ ......+.++++|+.|++
T Consensus 172 l~~L~~L~Ls~N~-l~~~~~---------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 172 FPALSTLDLSDNP-ELGERG---------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp CSSCCEEECCSCT-TCHHHH---------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred CCCCCEEECCCCC-cCcchH---------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence 5677777777665 111100 0000112455566666666666642 223344455666666666
Q ss_pred ccccccccccc--c--cccccEEEccccccccc
Q 018344 182 HYCMKLRSINI--S--SPRLKELVFERCEELVE 210 (357)
Q Consensus 182 ~~~~~l~~l~~--~--~~~L~~L~l~~c~~L~~ 210 (357)
+++.-....+. . .++|+.|+++++ .+++
T Consensus 236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 267 (312)
T 1wwl_A 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQ 267 (312)
T ss_dssp TTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSS
T ss_pred CCCcCCcccchhhhhhcCCCCEEECCCC-ccCh
Confidence 54432221111 1 355666666665 4443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.29 E-value=2.7e-12 Score=113.22 Aligned_cols=166 Identities=20% Similarity=0.150 Sum_probs=84.2
Q ss_pred cCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC---cCCCCCccEE
Q 018344 34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNKLKEI 110 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---l~~~~~L~~L 110 (357)
.+++|+.|+++++.+.....+..+++|++|++++|.+..- + .+..+++|++|++++|. ++.+. +.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence 3455666666665554433455566666666666555321 1 23455566666666553 22221 2344556666
Q ss_pred EecccCCC-cce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHHHHhccCCccceeecccccc
Q 018344 111 KLDSNRCG-LER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK 186 (357)
Q Consensus 111 ~l~~c~~~-l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 186 (357)
++++|... ... ....+++|++|+++++.+.. ...+.++++|+.|++++|.+++ ..+..+.++++|+.|++++|.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~- 192 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ- 192 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCc-
Confidence 66655421 110 01124556666665532221 1124566677777777776643 122335667777777775543
Q ss_pred cccccc----ccccccEEEcccc
Q 018344 187 LRSINI----SSPRLKELVFERC 205 (357)
Q Consensus 187 l~~l~~----~~~~L~~L~l~~c 205 (357)
+..++. ..++|+.|+++++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHHHHhCCcCCCEEEccCC
Confidence 323322 1456777777665
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.29 E-value=2.5e-12 Score=114.54 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=63.4
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
++++++....+|..+. +++++|+|++|.+.. +..+.++++|++|+|++|.++.- +. .+.+++|++|++++|.
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N~- 88 (290)
T 1p9a_G 15 VNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGTLDLSHNQ- 88 (290)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCEEECCSSC-
T ss_pred EECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc--cC-CCCCCcCCEEECCCCc-
Confidence 4556666777887664 578888888887655 44677888888888888876421 11 1567888888888775
Q ss_pred CCccC--cCCCCCccEEEecccC
Q 018344 96 LKSLQ--LLGLNKLKEIKLDSNR 116 (357)
Q Consensus 96 l~~l~--l~~~~~L~~L~l~~c~ 116 (357)
++.++ +.++++|++|++++|.
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~ 111 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNR 111 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSC
T ss_pred CCcCchhhccCCCCCEEECCCCc
Confidence 33332 2345778888887776
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.28 E-value=6.3e-13 Score=119.68 Aligned_cols=188 Identities=16% Similarity=0.167 Sum_probs=123.6
Q ss_pred hCCCeEEEEEecCCcce-ecCccc--ccCCCccEEEeeccccCC-CCCccCC-----CCCceEEeeccccCHHHHHHHHc
Q 018344 10 ASNVKELKLDVGCCRIY-NLPQIV--FYLKSIYVLDFEFCKLEP-PRSTVTL-----FSLRKLCLSFVHVDDEVIRDMVA 80 (357)
Q Consensus 10 ~~~v~~l~l~~~~~~~~-~lP~~i--~~~~~L~~L~Ls~~~~~~-p~~~~~l-----~~L~~L~L~~~~~~~~~l~~l~~ 80 (357)
...+++|++. ++... .+|..+ ..+++|++|+|++|.+.. |..+..+ ++|++|+|++|.+... .+..++
T Consensus 94 l~~L~~L~L~--~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLE--NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVR 170 (312)
T ss_dssp TSCCCEEEEE--EEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCC
T ss_pred cCCccEEEcc--CCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhc
Confidence 4567777764 43343 678776 679999999999998766 5555665 9999999999987432 123467
Q ss_pred CCCCccEEeeecCCCCCc------cCcCCCCCccEEEecccCCC-ccee----EeecceeeEEEEeecCCCc---eeecc
Q 018344 81 GCPLIEYININNCPGLKS------LQLLGLNKLKEIKLDSNRCG-LERV----YINGVNVHSVDIKVYLEPC---EVNVS 146 (357)
Q Consensus 81 ~~~~L~~L~L~~c~~l~~------l~l~~~~~L~~L~l~~c~~~-l~~~----~~~~p~L~~L~l~~~~~~~---~~~~~ 146 (357)
.+++|++|++++|..... +....+++|++|++++|... ...+ ....++|++|+++++.+.. ...+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 899999999999874322 22256789999999999731 1121 1134688888887753321 12344
Q ss_pred ccccccceeecccccCHHHHHHHhccCCccceeeccccccccccccc--cccccEEEcccc
Q 018344 147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS--SPRLKELVFERC 205 (357)
Q Consensus 147 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~c 205 (357)
.+++|+.|++++|.++ .++..+. ++|+.|+++++ .+..++.. .++|+.|+++++
T Consensus 251 ~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp CCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred hcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence 5677888888888775 2222222 67888888654 34443332 456777777665
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=1.1e-12 Score=118.28 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=80.9
Q ss_pred ecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc
Q 018344 20 VGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL 99 (357)
Q Consensus 20 ~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l 99 (357)
++++....+|. .++|++|++++|.+... ....+++|++|++++|.++.. .+..+..+++|++|++++|. ++..
T Consensus 87 Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~ 159 (317)
T 3o53_A 87 LNNNYVQELLV----GPSIETLHAANNNISRV-SCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNE-IDTV 159 (317)
T ss_dssp CCSSEEEEEEE----CTTCCEEECCSSCCSEE-EECCCSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSC-CCEE
T ss_pred CcCCccccccC----CCCcCEEECCCCccCCc-CccccCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCC-CCcc
Confidence 34444444442 35667777766665441 122356677777776665321 01123456667777776654 2221
Q ss_pred C---c-CCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccCC
Q 018344 100 Q---L-LGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELP 174 (357)
Q Consensus 100 ~---l-~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 174 (357)
. + ..+++|++|++++|...-.......++|++|+++++.+.. ...+..+++|+.|++++|.+++ ++..+..++
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~ 237 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQ 237 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCT
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc--hhhHhhcCC
Confidence 1 1 1345666666666652111111235666666666643321 1235556666666666666642 333355666
Q ss_pred ccceeeccccc
Q 018344 175 FLEYLALHYCM 185 (357)
Q Consensus 175 ~L~~L~l~~~~ 185 (357)
+|+.|++++++
T Consensus 238 ~L~~L~l~~N~ 248 (317)
T 3o53_A 238 NLEHFDLRGNG 248 (317)
T ss_dssp TCCEEECTTCC
T ss_pred CCCEEEccCCC
Confidence 66666665544
No 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.28 E-value=4.2e-12 Score=124.19 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=82.7
Q ss_pred cCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC
Q 018344 21 GCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ 100 (357)
Q Consensus 21 ~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~ 100 (357)
+.+....+| .+..+++|+.|+|++|.+.....+..+++|++|+|++|.+.. ++ .+..+++|+.|+|++|..-..-.
T Consensus 51 ~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~~ 126 (605)
T 1m9s_A 51 NNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDING 126 (605)
T ss_dssp TTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCGG
T ss_pred cCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCcc
Confidence 344444454 355566666666666665552235666666666666665532 11 24556666666666665222112
Q ss_pred cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceee
Q 018344 101 LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLA 180 (357)
Q Consensus 101 l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 180 (357)
+..+++|+.|++++|...-......+++|+.|+++++.+.....+..+++|+.|+|++|.+++- ..+..+++|+.|+
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLE 203 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEE
T ss_pred ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC---hHHccCCCCCEEE
Confidence 3445666666666665211111123456666666654332111255556666666666665431 1245566666666
Q ss_pred ccccc
Q 018344 181 LHYCM 185 (357)
Q Consensus 181 l~~~~ 185 (357)
+++|.
T Consensus 204 L~~N~ 208 (605)
T 1m9s_A 204 LFSQE 208 (605)
T ss_dssp CCSEE
T ss_pred ccCCc
Confidence 65443
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=6.4e-12 Score=110.64 Aligned_cols=170 Identities=19% Similarity=0.185 Sum_probs=123.7
Q ss_pred CCCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
..+++|+ ++++....+|. .+.++++|++|++++|.+.. | ..+.++++|++|++++|.+... ....+..+++|++
T Consensus 37 ~~l~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLD--LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEE--CCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCE
T ss_pred CCCCEEE--CcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCE
Confidence 3456655 56666777876 56779999999999998766 4 3567899999999999987421 1234567899999
Q ss_pred EeeecCCCCCccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccc
Q 018344 88 ININNCPGLKSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLS 160 (357)
Q Consensus 88 L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~ 160 (357)
|++++|. ++.+. +..+++|++|++++|.. .... ....+++|++|+++++.+.. ...+.++++|+.|++++|.
T Consensus 114 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 9999986 33332 45678999999999973 1111 12247899999998854331 1246788999999999998
Q ss_pred cCHHHHHHHhccCCccceeeccccc
Q 018344 161 ITDKWLYNQISELPFLEYLALHYCM 185 (357)
Q Consensus 161 i~~~~~~~l~~~~~~L~~L~l~~~~ 185 (357)
+++ ..+..+..+++|+.|++++++
T Consensus 193 l~~-~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 LKR-VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCc-CCHHHhccccCCCEEEecCCC
Confidence 854 223356789999999998764
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=4.3e-12 Score=106.31 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=91.7
Q ss_pred ccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCC--ccCcCCCCCccE
Q 018344 33 FYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK--SLQLLGLNKLKE 109 (357)
Q Consensus 33 ~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~--~l~l~~~~~L~~ 109 (357)
..+++|++|+++++.+.. | .+..+++|++|++++|.+..- + .+..+++|++|++++|..-. .-.+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 346677777777776655 4 566777777777777755221 1 34567777777777765321 123445567777
Q ss_pred EEecccCCCc--ceeEeecceeeEEEEeecC-CCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccc
Q 018344 110 IKLDSNRCGL--ERVYINGVNVHSVDIKVYL-EPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC 184 (357)
Q Consensus 110 L~l~~c~~~l--~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 184 (357)
|++++|...- ......+++|++|+++++. +.....+.++++|+.|++++|.+++ ++ .+..+++|+.|+++++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCc
Confidence 7777766211 1111235677777777653 3211256778899999999998865 22 5788999999999654
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.26 E-value=4.8e-12 Score=110.18 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=104.3
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.++.++.....+|..+. ++++.|+|+++.+.. +..+.++++|++|+|++|.++.. .+..+..+++|++|++++|.
T Consensus 18 ~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp EEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc
Confidence 35667777888998765 589999999998766 44688999999999999987432 13345678999999999976
Q ss_pred CCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhc
Q 018344 95 GLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQIS 171 (357)
Q Consensus 95 ~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 171 (357)
++.+. +.++++|++|++++|.. ..+ + ...+.++++|+.|++++|.+++ ..+..+.
T Consensus 95 -l~~~~~~~~~~l~~L~~L~L~~N~l--~~~-----------------~-~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 152 (251)
T 3m19_A 95 -LASLPLGVFDHLTQLDKLYLGGNQL--KSL-----------------P-SGVFDRLTKLKELRLNTNQLQS-IPAGAFD 152 (251)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCC--CCC-----------------C-TTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred -ccccChhHhcccCCCCEEEcCCCcC--CCc-----------------C-hhHhccCCcccEEECcCCcCCc-cCHHHcC
Confidence 33332 34568899999988861 111 1 0123455566666666666532 1112345
Q ss_pred cCCccceeecccccccccccc----ccccccEEEcccc
Q 018344 172 ELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC 205 (357)
Q Consensus 172 ~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c 205 (357)
++++|+.|+++++. +..++. ..++|+.|+++++
T Consensus 153 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 153 KLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 56666666665432 323222 1345666666655
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=6.6e-12 Score=110.68 Aligned_cols=170 Identities=18% Similarity=0.164 Sum_probs=122.9
Q ss_pred hCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 10 ~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
...++++.+ +++....++ .+..+++|++|++++|.+.....+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 40 l~~L~~L~l--~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIA--NNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEEC--TTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred ccceeeeee--CCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence 345666654 455455555 4778999999999999887755788999999999999987421 133357789999999
Q ss_pred eecCCCCCccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccC
Q 018344 90 INNCPGLKSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 90 L~~c~~l~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~ 162 (357)
+++|. ++.+. +.++++|++|++++|.. .... ....+++|++|+++++.+.. ...+.++++|+.|++++|.++
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99986 33332 45678999999999873 1111 12247899999998864431 123577899999999999886
Q ss_pred HHHHHHHhccCCccceeeccccc
Q 018344 163 DKWLYNQISELPFLEYLALHYCM 185 (357)
Q Consensus 163 ~~~~~~l~~~~~~L~~L~l~~~~ 185 (357)
+ ..+..+..+++|+.|++++++
T Consensus 195 ~-~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 195 S-VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp C-CCTTTTTTCTTCCEEECCSSC
T ss_pred c-cCHHHHhCCcCCCEEEccCCC
Confidence 4 223456889999999998764
No 87
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.25 E-value=5.3e-12 Score=114.56 Aligned_cols=189 Identities=20% Similarity=0.196 Sum_probs=117.8
Q ss_pred CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.++.+ +++++....+|+ .+.++++|++|++++|.+.. |..+.++++|++|++++|.+.. ++. ...++|++|
T Consensus 55 ~l~~L--~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~L 128 (332)
T 2ft3_A 55 DTTLL--DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVEL 128 (332)
T ss_dssp TCCEE--ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCEE
T ss_pred CCeEE--ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCEE
Confidence 45554 556666777754 67789999999999998765 5578899999999999997741 221 123789999
Q ss_pred eeecCCCCCccC---cCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344 89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~ 162 (357)
++++|.. +.+. +.++++|++|++++|... .....+...+|++|++++..+.. ....-.++|++|++++|.++
T Consensus 129 ~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 129 RIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQ 206 (332)
T ss_dssp ECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCC
T ss_pred ECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCccccCCCCEEECCCCcCC
Confidence 9998763 3332 456789999999988731 11111122267777776643221 00011256777777777664
Q ss_pred HHHHHHHhccCCccceeecccccccccccc----ccccccEEEcccccccccc
Q 018344 163 DKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEF 211 (357)
Q Consensus 163 ~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~ 211 (357)
+. .+..+.++++|+.|+++++. +..++. ..++|++|+++++ .++.+
T Consensus 207 ~~-~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 256 (332)
T 2ft3_A 207 AI-ELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRV 256 (332)
T ss_dssp CC-CTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBC
T ss_pred cc-CHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeec
Confidence 32 12335667777777776543 322221 1466777777776 45543
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.24 E-value=3.2e-11 Score=106.41 Aligned_cols=188 Identities=18% Similarity=0.184 Sum_probs=128.2
Q ss_pred CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.++++ +++++....+|. .+.++++|++|++++|.+.. +..+.++++|++|+|++|.+.... ...+..+++|++|
T Consensus 29 ~l~~L--~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEE--ECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEE
T ss_pred CccEE--ECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccEE
Confidence 45555 457777777776 66779999999999997765 346888999999999999774321 2345678999999
Q ss_pred eeecCCC--CCccCcCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecCCCc--eeecccccccc----ceeec
Q 018344 89 NINNCPG--LKSLQLLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLT----HLRLD 157 (357)
Q Consensus 89 ~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~----~L~L~ 157 (357)
++++|.. +....+..+++|++|++++|... +.......++|++|+++++.+.. ...+..+++|+ .|+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 9998863 22224566789999999998731 12223346899999998865431 12344555666 78888
Q ss_pred ccccCHHHHHHHhccCCccceeeccccccccccccc----cccccEEEcccc
Q 018344 158 GLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERC 205 (357)
Q Consensus 158 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c 205 (357)
+|.+++ ++.......+|+.|+++++. +..++.. .++|++|+++++
T Consensus 186 ~n~l~~--~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 186 LNPMNF--IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SSCCCE--ECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCcccc--cCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 888753 22222334589999997654 5444432 467778877765
No 89
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.24 E-value=3.5e-12 Score=124.09 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=142.0
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
..++.+++ +++....+|..+..+ +|++|++++|.+.. |. ..+++|++|++++|.+.... . ...+++|++|+
T Consensus 282 ~~L~~L~l--~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~ 353 (570)
T 2z63_A 282 TNVSSFSL--VSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLD 353 (570)
T ss_dssp TTCSEEEE--ESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEE
T ss_pred CcccEEEe--cCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccc-c--cccCCCCCEEe
Confidence 45666655 555667899988888 99999999998765 32 57889999999988763211 1 15788899999
Q ss_pred eecCCCCCcc-----CcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCC---Cceeeccccccccceeecccc
Q 018344 90 INNCPGLKSL-----QLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLE---PCEVNVSSCKNLTHLRLDGLS 160 (357)
Q Consensus 90 L~~c~~l~~l-----~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~---~~~~~~~~~~~L~~L~L~~~~ 160 (357)
+++|.. ... .+.++++|++|++++|.. ........+++|++|++++... +....+.++++|+.|++++|.
T Consensus 354 l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 354 LSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp CCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred CcCCcc-CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 988763 221 234567888888888862 1122233477888888877422 111245677888888888887
Q ss_pred cCHHHHHHHhccCCccceeeccccccc-cccccc---cccccEEEccccccccccc---c-cCCCcceEEeeeee----e
Q 018344 161 ITDKWLYNQISELPFLEYLALHYCMKL-RSINIS---SPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV----E 228 (357)
Q Consensus 161 i~~~~~~~l~~~~~~L~~L~l~~~~~l-~~l~~~---~~~L~~L~l~~c~~L~~~~---i-~~~~L~~~~~~~~~----~ 228 (357)
+.+. .+..+.++++|+.|++++|... ..++.. .++|+.|++++| .++++. + ..++|+.+...+.. +
T Consensus 433 l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 433 TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 6432 2345677888888888776543 234322 567888888887 555442 2 23556666554432 1
Q ss_pred e-EecccccceeEEEEE
Q 018344 229 S-FSSNALALSQTLLCF 244 (357)
Q Consensus 229 ~-~~~~~~~L~~~~l~~ 244 (357)
. .......++.++++.
T Consensus 511 ~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 511 DGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp TTTTTTCTTCCEEECCS
T ss_pred HHHhhcccCCcEEEecC
Confidence 1 112345677777643
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=4.2e-12 Score=111.38 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=88.9
Q ss_pred cCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-
Q 018344 21 GCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL- 99 (357)
Q Consensus 21 ~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l- 99 (357)
+.+....++ .+..+++|++|++++|.+.....+..+++|++|+|++|.++.. +. +..+++|++|++++|. ++.+
T Consensus 27 ~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~-l~~l~ 101 (263)
T 1xeu_A 27 GKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNR-LKNLN 101 (263)
T ss_dssp TCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSC-CSCCT
T ss_pred cCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCc-cCCcC
Confidence 334444555 4566888889998888776633677888899999988877432 22 6788888888888876 3333
Q ss_pred CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCcccee
Q 018344 100 QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL 179 (357)
Q Consensus 100 ~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 179 (357)
.+.. ++|++|++++|...-......+++|+.|+++++.+.....+..+++|+.|++++|.+++. ..+..+++|+.|
T Consensus 102 ~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L 177 (263)
T 1xeu_A 102 GIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWI 177 (263)
T ss_dssp TCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEE
T ss_pred cccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEE
Confidence 2223 678888888776211011112444555555443322111344445555555555555332 234445555555
Q ss_pred eccc
Q 018344 180 ALHY 183 (357)
Q Consensus 180 ~l~~ 183 (357)
++++
T Consensus 178 ~l~~ 181 (263)
T 1xeu_A 178 DLTG 181 (263)
T ss_dssp EEEE
T ss_pred eCCC
Confidence 5543
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=1.1e-11 Score=121.14 Aligned_cols=166 Identities=17% Similarity=0.086 Sum_probs=126.6
Q ss_pred ccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEe
Q 018344 33 FYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL 112 (357)
Q Consensus 33 ~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l 112 (357)
..+++|+.|++++|.+.....+..+++|++|+|++|.+... +. +..+++|+.|+|++|..-..-.+..+++|+.|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 45789999999999887744788999999999999988432 22 7789999999999986322224556789999999
Q ss_pred cccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc
Q 018344 113 DSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI 192 (357)
Q Consensus 113 ~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~ 192 (357)
++|...-......+++|+.|+++++.+.....+..+++|+.|+|++|.+++.. + +..+++|+.|+|++| .+..++.
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N-~i~~l~~ 192 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLYLSKN-HISDLRA 192 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEECCSS-CCCBCGG
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCch-h--hccCCCCCEEECcCC-CCCCChH
Confidence 99973111112347899999999865542245778899999999999986532 2 789999999999766 4444443
Q ss_pred c--cccccEEEcccc
Q 018344 193 S--SPRLKELVFERC 205 (357)
Q Consensus 193 ~--~~~L~~L~l~~c 205 (357)
. .++|+.|++++|
T Consensus 193 l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQ 207 (605)
T ss_dssp GTTCTTCSEEECCSE
T ss_pred HccCCCCCEEEccCC
Confidence 2 578999999987
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=1.4e-11 Score=103.08 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=92.3
Q ss_pred CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEEecccCCCc--ceeEeeccee
Q 018344 53 STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDSNRCGL--ERVYINGVNV 129 (357)
Q Consensus 53 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l--~~~~~~~p~L 129 (357)
....+++|++|+++++.+.. ++ -+..+++|++|++++|. ++.+ .+..+++|++|++++|...- ......+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 34567888888888887642 22 25677888888888874 3333 44566788888888876311 1122246788
Q ss_pred eEEEEeecCCCc--eeeccccccccceeecccc-cCHHHHHHHhccCCccceeeccccccccccccc--cccccEEEccc
Q 018344 130 HSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRSINIS--SPRLKELVFER 204 (357)
Q Consensus 130 ~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~ 204 (357)
++|+++++.+.. ...+..+++|++|++++|. +++- + .+.++++|+.|++++|. +..++.. .++|+.|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeC
Confidence 888887754331 2345677788888888886 5432 2 46778888888886553 3333321 46677777766
Q ss_pred c
Q 018344 205 C 205 (357)
Q Consensus 205 c 205 (357)
+
T Consensus 191 N 191 (197)
T 4ezg_A 191 Q 191 (197)
T ss_dssp C
T ss_pred c
Confidence 5
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.22 E-value=9.5e-12 Score=115.30 Aligned_cols=196 Identities=19% Similarity=0.163 Sum_probs=137.0
Q ss_pred CCCeEEEEEecCCcce-----ecCcccccCCCccEEEeeccccCC-----CCC-------ccCCCCCceEEeeccccCHH
Q 018344 11 SNVKELKLDVGCCRIY-----NLPQIVFYLKSIYVLDFEFCKLEP-----PRS-------TVTLFSLRKLCLSFVHVDDE 73 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~-----~lP~~i~~~~~L~~L~Ls~~~~~~-----p~~-------~~~l~~L~~L~L~~~~~~~~ 73 (357)
..++.|++ +++... .++..+..+++|++|+|++|.... |.. +..+++|++|+|++|.++..
T Consensus 32 ~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIVL--SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp SCCCEEEC--TTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCccEEEC--CCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 45666654 554332 255556789999999999975432 222 26889999999999998543
Q ss_pred ---HHHHHHcCCCCccEEeeecCCCCCcc---C----cCCC---------CCccEEEecccCCCccee------Eeecce
Q 018344 74 ---VIRDMVAGCPLIEYININNCPGLKSL---Q----LLGL---------NKLKEIKLDSNRCGLERV------YINGVN 128 (357)
Q Consensus 74 ---~l~~l~~~~~~L~~L~L~~c~~l~~l---~----l~~~---------~~L~~L~l~~c~~~l~~~------~~~~p~ 128 (357)
.++..+..+++|++|+|++|.. ... . +..+ ++|++|++++|...-..+ ...+++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 4566678899999999999873 211 1 1122 699999999997321111 124679
Q ss_pred eeEEEEeecCCC------cee-eccccccccceeecccccCH---HHHHHHhccCCccceeeccccccccc----cccc-
Q 018344 129 VHSVDIKVYLEP------CEV-NVSSCKNLTHLRLDGLSITD---KWLYNQISELPFLEYLALHYCMKLRS----INIS- 193 (357)
Q Consensus 129 L~~L~l~~~~~~------~~~-~~~~~~~L~~L~L~~~~i~~---~~~~~l~~~~~~L~~L~l~~~~~l~~----l~~~- 193 (357)
|++|.++++.+. ... .+..+++|+.|++++|.+++ ..++..+..+++|+.|++++|.--.. ++..
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 999999886543 112 56678899999999999975 44566788999999999987753211 1221
Q ss_pred ----cccccEEEccccccccc
Q 018344 194 ----SPRLKELVFERCEELVE 210 (357)
Q Consensus 194 ----~~~L~~L~l~~c~~L~~ 210 (357)
.++|++|++++| .++.
T Consensus 269 ~~~~~~~L~~L~L~~n-~i~~ 288 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYN-EIEL 288 (386)
T ss_dssp HTCSSCCCCEEECCSS-CCBH
T ss_pred hhccCCCeEEEECcCC-cCCH
Confidence 578999999998 5665
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.21 E-value=1.5e-10 Score=106.32 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=64.7
Q ss_pred EecCCccee-cCcccccCCCccEEEeeccccCC-C-----CCccCCC-CCceEEeeccccCH---HHHHHHHcCC-CCcc
Q 018344 19 DVGCCRIYN-LPQIVFYLKSIYVLDFEFCKLEP-P-----RSTVTLF-SLRKLCLSFVHVDD---EVIRDMVAGC-PLIE 86 (357)
Q Consensus 19 ~~~~~~~~~-lP~~i~~~~~L~~L~Ls~~~~~~-p-----~~~~~l~-~L~~L~L~~~~~~~---~~l~~l~~~~-~~L~ 86 (357)
+++.+.... +|..+...++|++|+|++|.+.. + ..+.+++ +|++|+|++|.+++ ..+...+... ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 344444443 34444445669999999998765 2 3456788 89999999998743 3444444554 8999
Q ss_pred EEeeecCCCCCccC-------cCCC-CCccEEEecccC
Q 018344 87 YININNCPGLKSLQ-------LLGL-NKLKEIKLDSNR 116 (357)
Q Consensus 87 ~L~L~~c~~l~~l~-------l~~~-~~L~~L~l~~c~ 116 (357)
+|++++|. ++... +..+ ++|++|++++|.
T Consensus 84 ~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 84 SLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp EEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred EEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 99999987 33221 2233 688888888886
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.19 E-value=2.6e-11 Score=107.93 Aligned_cols=174 Identities=17% Similarity=0.103 Sum_probs=125.1
Q ss_pred cccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccE
Q 018344 32 VFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKE 109 (357)
Q Consensus 32 i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~ 109 (357)
+.++++++.++++++.+.. |..+ .+++++|+|++|.++... +..+..+++|++|++++|. ++.+ ....+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCE
Confidence 4567899999999988776 5433 379999999999874321 2346789999999999986 4433 2245689999
Q ss_pred EEecccCC-CcceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHHHHhccCCccceeecccccc
Q 018344 110 IKLDSNRC-GLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK 186 (357)
Q Consensus 110 L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 186 (357)
|++++|.. .+.......++|++|+++++.+.. ...+.++++|+.|++++|.++. ..+..+..+++|+.|+++++ .
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N-~ 159 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANN-N 159 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTS-C
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCC-c
Confidence 99999873 222222347889999998854431 1347788999999999998853 22345678899999999755 4
Q ss_pred ccccccc----cccccEEEccccccccccc
Q 018344 187 LRSINIS----SPRLKELVFERCEELVEFE 212 (357)
Q Consensus 187 l~~l~~~----~~~L~~L~l~~c~~L~~~~ 212 (357)
+..++.. .++|+.|+++++ .++.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip 188 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQEN-SLYTIP 188 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCccCHHHhcCcCCCCEEECCCC-cCCccC
Confidence 5555532 578999999888 566543
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=110.12 Aligned_cols=82 Identities=18% Similarity=0.112 Sum_probs=55.3
Q ss_pred CCCccEEEeeccccCC--CCCc--cCCCCCceEEeeccccCHHH--H-HHHHcCCCCccEEeeecCCCCCc--cCcCCCC
Q 018344 35 LKSIYVLDFEFCKLEP--PRST--VTLFSLRKLCLSFVHVDDEV--I-RDMVAGCPLIEYININNCPGLKS--LQLLGLN 105 (357)
Q Consensus 35 ~~~L~~L~Ls~~~~~~--p~~~--~~l~~L~~L~L~~~~~~~~~--l-~~l~~~~~~L~~L~L~~c~~l~~--l~l~~~~ 105 (357)
+++|++|++++|.+.. |..+ ..+++|++|+|++|.++... + ..-+..+++|++|++++|..-.. -.+.+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568888888887654 4444 77888888888888774310 1 12234688888888888764221 1234567
Q ss_pred CccEEEecccC
Q 018344 106 KLKEIKLDSNR 116 (357)
Q Consensus 106 ~L~~L~l~~c~ 116 (357)
+|++|++++|.
T Consensus 170 ~L~~L~Ls~N~ 180 (310)
T 4glp_A 170 ALTSLDLSDNP 180 (310)
T ss_dssp TCCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 88888888876
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=5.9e-11 Score=100.12 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=100.7
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.++........+|..+ .++|++|+++++.+.. + ..+.++++|++|++++|.++.. ....+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCc
Confidence 3455666677888765 3589999999998766 3 3567899999999999977421 12335678999999999886
Q ss_pred CCCccC---cCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344 95 GLKSLQ---LLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY 167 (357)
Q Consensus 95 ~l~~l~---l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~ 167 (357)
++.+. +.++++|++|++++|... ... .....++|++|+++++.+.. ...+..+++|+.|++++|.+.
T Consensus 88 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 -LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred -CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 33332 345688999999888621 111 11224566666665532211 112445566666666666552
Q ss_pred HHhccCCccceeeccccccccccc
Q 018344 168 NQISELPFLEYLALHYCMKLRSIN 191 (357)
Q Consensus 168 ~l~~~~~~L~~L~l~~~~~l~~l~ 191 (357)
..++.|+.|+++.+.....+|
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBB
T ss_pred ---cCCCCHHHHHHHHHhCCceee
Confidence 345566666654443333333
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.08 E-value=8.2e-11 Score=107.54 Aligned_cols=190 Identities=16% Similarity=0.131 Sum_probs=122.6
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
++.++....++|..+. +++++|+|++|.+.. | ..+.++++|++|+|++|.+....-...+.++++++++...++..
T Consensus 14 v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 5566677788898763 689999999988766 4 46789999999999999762211122345778877766655555
Q ss_pred CCccC---cCCCCCccEEEecccCC-Cccee-EeecceeeEEEEeec-CCCc--eeecccc-ccccceeecccccCHHHH
Q 018344 96 LKSLQ---LLGLNKLKEIKLDSNRC-GLERV-YINGVNVHSVDIKVY-LEPC--EVNVSSC-KNLTHLRLDGLSITDKWL 166 (357)
Q Consensus 96 l~~l~---l~~~~~L~~L~l~~c~~-~l~~~-~~~~p~L~~L~l~~~-~~~~--~~~~~~~-~~L~~L~L~~~~i~~~~~ 166 (357)
++.+. +.++++|++|++++|.. ..... ......+..+.+.+. .+.. ...+.++ ..++.|++++|.++. +
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i 169 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--I 169 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--E
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--C
Confidence 66553 34568899999998863 12211 223445666776552 2210 1123333 357788888887743 2
Q ss_pred HHHhccCCccceeeccccccccccccc----cccccEEEccccccccccc
Q 018344 167 YNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCEELVEFE 212 (357)
Q Consensus 167 ~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~~L~~~~ 212 (357)
+......++|+.+++.+++.++.++.. .++|+.|+++++ +++.+.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp 218 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP 218 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence 222334567888888777777777642 567888888887 666654
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.08 E-value=2e-10 Score=98.42 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=93.4
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
++.+......+|..+. ++|++|+|++|.+.. |..+.++++|++|+|++|.+..- ....+..+++|++|+|++|.
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~- 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQ- 99 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCc-
Confidence 5566677788887664 789999999998766 55678899999999999987321 12335678899999999875
Q ss_pred CCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhcc
Q 018344 96 LKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISE 172 (357)
Q Consensus 96 l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 172 (357)
++.+. +..+++|++|++++|.. . .+| ..+..+++|+.|++++|.++.- ....+..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l--~-----------------~lp--~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~ 157 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKL--T-----------------ELP--RGIERLTHLTHLALDQNQLKSI-PHGAFDR 157 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCC--C-----------------SCC--TTGGGCTTCSEEECCSSCCCCC-CTTTTTT
T ss_pred CCccChhHhCcchhhCeEeccCCcc--c-----------------ccC--cccccCCCCCEEECCCCcCCcc-CHHHHhC
Confidence 44432 34567888888887761 0 111 2334556666666666665421 1133455
Q ss_pred CCccceeecccc
Q 018344 173 LPFLEYLALHYC 184 (357)
Q Consensus 173 ~~~L~~L~l~~~ 184 (357)
+++|+.|+++++
T Consensus 158 l~~L~~L~l~~N 169 (229)
T 3e6j_A 158 LSSLTHAYLFGN 169 (229)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEEeeCC
Confidence 666666666543
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.08 E-value=9.7e-10 Score=107.96 Aligned_cols=142 Identities=22% Similarity=0.210 Sum_probs=94.4
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.++.++.....+|..+- +++++|+|++|.+.. +..+.++++|++|+|++|.++.- .+..+.++++|++|+|++|.
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCc
Confidence 34555556778887653 479999999998766 45789999999999999977421 12346789999999999986
Q ss_pred CCCccC---cCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHh
Q 018344 95 GLKSLQ---LLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQI 170 (357)
Q Consensus 95 ~l~~l~---l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 170 (357)
++.+. +.++++|++|++++|.. .+.. ..++++++|++|++++|.++....+..+
T Consensus 112 -l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~---------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 169 (635)
T 4g8a_A 112 -IQSLALGAFSGLSSLQKLVAVETNLASLEN---------------------FPIGHLKTLKELNVAHNLIQSFKLPEYF 169 (635)
T ss_dssp -CCEECGGGGTTCTTCCEEECTTSCCCCSTT---------------------CCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred -CCCCCHHHhcCCCCCCEEECCCCcCCCCCh---------------------hhhhcCcccCeeccccCccccCCCchhh
Confidence 55543 45678999999998861 1111 1344555566666665555332233344
Q ss_pred ccCCccceeeccc
Q 018344 171 SELPFLEYLALHY 183 (357)
Q Consensus 171 ~~~~~L~~L~l~~ 183 (357)
+++++|+.|++++
T Consensus 170 ~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 170 SNLTNLEHLDLSS 182 (635)
T ss_dssp GGCTTCCEEECCS
T ss_pred ccchhhhhhcccC
Confidence 5556666666644
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=2.1e-10 Score=111.12 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=122.1
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
.+++.++ ++++....+|..++ ++|++|+|++|.+.. | ..+++|++|+|++|.++. ++. +.. +|++|+
T Consensus 59 ~~L~~L~--Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQ--LNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEE--CCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEE
T ss_pred CCccEEE--eCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEEE
Confidence 3566665 46666777998774 789999999998876 4 568999999999998743 343 332 899999
Q ss_pred eecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344 90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ 169 (357)
Q Consensus 90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l 169 (357)
+++|. ++.++- .+++|+.|++++|.. ..+....++|++|+++++.+.....+. ++|+.|++++|.++. ++.
T Consensus 127 Ls~N~-l~~lp~-~l~~L~~L~Ls~N~l--~~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~--lp~- 197 (571)
T 3cvr_A 127 VDNNQ-LTMLPE-LPALLEYINADNNQL--TMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLES--LPA- 197 (571)
T ss_dssp CCSSC-CSCCCC-CCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSS--CCC-
T ss_pred CCCCc-CCCCCC-cCccccEEeCCCCcc--CcCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCc--hhh-
Confidence 99986 444544 568999999999873 112225678999999886443111133 789999999998852 222
Q ss_pred hcc-----CCccceeeccccccccccccc---cccccEEEcccccccc
Q 018344 170 ISE-----LPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELV 209 (357)
Q Consensus 170 ~~~-----~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~ 209 (357)
+.. .+.|+.|++++| .+..+|.. .++|+.|+++++ .++
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N-~l~ 243 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN-PLS 243 (571)
T ss_dssp CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS-SCC
T ss_pred HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC-cCC
Confidence 222 222399999654 45555543 578899999988 454
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=1.4e-10 Score=98.85 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=94.0
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.++.++.....+|..+. ++|+.|+++++.+.. +..+..+++|++|+|++|.++.. .+..+.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCc
Confidence 35667777888998765 689999999998766 44788899999999999987422 13346778999999999876
Q ss_pred CCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhc
Q 018344 95 GLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQIS 171 (357)
Q Consensus 95 ~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 171 (357)
++.+. +.++++|++|++++|.. ..+ .+ ..+.++++|+.|++++|.++.- .+..+.
T Consensus 92 -l~~l~~~~f~~l~~L~~L~L~~N~l--~~~----------------~~--~~~~~l~~L~~L~L~~N~l~~~-~~~~~~ 149 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLLLLNANKI--NCL----------------RV--DAFQDLHNLNLLSLYDNKLQTI-AKGTFS 149 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCC--CCC----------------CT--TTTTTCTTCCEEECCSSCCSCC-CTTTTT
T ss_pred -CCccCHhHccCCCCCCEEECCCCCC--CEe----------------CH--HHcCCCCCCCEEECCCCcCCEE-CHHHHh
Confidence 44433 34567888888888761 000 01 2344555666666666655321 112344
Q ss_pred cCCccceeecccc
Q 018344 172 ELPFLEYLALHYC 184 (357)
Q Consensus 172 ~~~~L~~L~l~~~ 184 (357)
.+++|+.|+++++
T Consensus 150 ~l~~L~~L~L~~N 162 (220)
T 2v9t_B 150 PLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEEeCCC
Confidence 5556666665443
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.06 E-value=5.3e-10 Score=90.81 Aligned_cols=129 Identities=18% Similarity=0.138 Sum_probs=82.5
Q ss_pred CCCccEEEeeccccC--C-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--cCCCCCccE
Q 018344 35 LKSIYVLDFEFCKLE--P-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKE 109 (357)
Q Consensus 35 ~~~L~~L~Ls~~~~~--~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l~~~~~L~~ 109 (357)
.++|++|++++|.+. . |..+..+++|++|++++|.++.. ..+..+++|++|++++|..-..++ ...+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356788888877765 3 55567778888888888776432 345667778888887776322121 112467777
Q ss_pred EEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHH--HHHHHhccCCccceeeccccc
Q 018344 110 IKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK--WLYNQISELPFLEYLALHYCM 185 (357)
Q Consensus 110 L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~--~~~~l~~~~~~L~~L~l~~~~ 185 (357)
|++++|.. ...+....+..+++|+.|++++|.+++. .....+..+++|+.|++++|.
T Consensus 100 L~Ls~N~l-------------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKL-------------------KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSC-------------------CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCcc-------------------CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 77776651 0111002456678888999988887542 123477889999999987664
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.05 E-value=1.5e-10 Score=106.20 Aligned_cols=190 Identities=16% Similarity=0.131 Sum_probs=119.1
Q ss_pred CCeEEEEEecCCcceecC-----cccccCC-CccEEEeeccccCC--CCCccCC-----CCCceEEeeccccCH---HHH
Q 018344 12 NVKELKLDVGCCRIYNLP-----QIVFYLK-SIYVLDFEFCKLEP--PRSTVTL-----FSLRKLCLSFVHVDD---EVI 75 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP-----~~i~~~~-~L~~L~Ls~~~~~~--p~~~~~l-----~~L~~L~L~~~~~~~---~~l 75 (357)
.+++|+ ++++.....+ ..+.+++ +|++|+|++|.+.. +..+..+ ++|++|+|++|.+++ ..+
T Consensus 23 ~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLD--LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEE--CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEE--ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 366655 5676666666 3455677 89999999998765 2234443 999999999998743 444
Q ss_pred HHHHcCC-CCccEEeeecCCCCCccCc-------CC-CCCccEEEecccCCCc---cee---Eeec-ceeeEEEEeecCC
Q 018344 76 RDMVAGC-PLIEYININNCPGLKSLQL-------LG-LNKLKEIKLDSNRCGL---ERV---YING-VNVHSVDIKVYLE 139 (357)
Q Consensus 76 ~~l~~~~-~~L~~L~L~~c~~l~~l~l-------~~-~~~L~~L~l~~c~~~l---~~~---~~~~-p~L~~L~l~~~~~ 139 (357)
...+..+ ++|++|++++|. ++.... .. ..+|++|++++|...- ..+ .... ++|++|+++++.+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 5555666 899999999987 333321 12 2589999999987211 111 0112 3788888877543
Q ss_pred Cc------eeecccc-ccccceeecccccCH---HHHHHHhcc-CCccceeecccccccccccc--------ccccccEE
Q 018344 140 PC------EVNVSSC-KNLTHLRLDGLSITD---KWLYNQISE-LPFLEYLALHYCMKLRSINI--------SSPRLKEL 200 (357)
Q Consensus 140 ~~------~~~~~~~-~~L~~L~L~~~~i~~---~~~~~l~~~-~~~L~~L~l~~~~~l~~l~~--------~~~~L~~L 200 (357)
.. ...+..+ ++|++|++++|.+++ ..+...+.. .++|+.|++++|. +...+. ..++|+.|
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEE
Confidence 21 0122334 478888888887765 224444444 4578888886553 322211 14667778
Q ss_pred Ecccc
Q 018344 201 VFERC 205 (357)
Q Consensus 201 ~l~~c 205 (357)
++++|
T Consensus 259 ~L~~n 263 (362)
T 3goz_A 259 YLDYD 263 (362)
T ss_dssp EEEHH
T ss_pred EeccC
Confidence 77777
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.04 E-value=3.4e-10 Score=98.34 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=97.2
Q ss_pred CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.++.+ +++++....++. .+.++++|++|+|++|.+.. +..+.++++|++|+|++|.++.. ....+..+++|++|
T Consensus 36 ~l~~L--~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 112 (251)
T 3m19_A 36 DTEKL--DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEE--ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCEE--EccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEE
Confidence 45555 456666666765 46679999999999998776 44678999999999999987422 12345789999999
Q ss_pred eeecCCCCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHH
Q 018344 89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW 165 (357)
Q Consensus 89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~ 165 (357)
++++|. ++.+. +.++++|++|++++|.. ..+ + ...+.++++|+.|++++|.+++ .
T Consensus 113 ~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~-----------------~-~~~~~~l~~L~~L~L~~N~l~~-~ 170 (251)
T 3m19_A 113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL--QSI-----------------P-AGAFDKLTNLQTLSLSTNQLQS-V 170 (251)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--CCC-----------------C-TTTTTTCTTCCEEECCSSCCSC-C
T ss_pred EcCCCc-CCCcChhHhccCCcccEEECcCCcC--Ccc-----------------C-HHHcCcCcCCCEEECCCCcCCc-c
Confidence 999985 44443 34568999999998862 111 1 0123445556666666555532 1
Q ss_pred HHHHhccCCccceeecccc
Q 018344 166 LYNQISELPFLEYLALHYC 184 (357)
Q Consensus 166 ~~~l~~~~~~L~~L~l~~~ 184 (357)
.+..+..+++|+.|+++++
T Consensus 171 ~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CTTTTTTCTTCCEEECCSC
T ss_pred CHHHHhCCCCCCEEEeeCC
Confidence 1223445556666666543
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=5.9e-10 Score=88.64 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=68.8
Q ss_pred CCccEEEeeccccC--C-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--cCCCCCccEE
Q 018344 36 KSIYVLDFEFCKLE--P-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKEI 110 (357)
Q Consensus 36 ~~L~~L~Ls~~~~~--~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l~~~~~L~~L 110 (357)
++|++|++++|.+. . |..+..+++|++|++++|.++.. ..++.+++|++|++++|..-..++ ...+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666554 2 44455666666666666655322 334556666666666654221111 1124556666
Q ss_pred EecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHH--HHHHHhccCCccceeecc
Q 018344 111 KLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK--WLYNQISELPFLEYLALH 182 (357)
Q Consensus 111 ~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~--~~~~l~~~~~~L~~L~l~ 182 (357)
++++|.. . ..+....+.++++|++|++++|.+++. .....+..+++|+.|+++
T Consensus 94 ~ls~N~i--~-----------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKI--K-----------------DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCC--C-----------------SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcC--C-----------------ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6665540 0 000002455677788888888877542 123467778888888874
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.02 E-value=6.4e-10 Score=99.79 Aligned_cols=148 Identities=14% Similarity=0.060 Sum_probs=103.8
Q ss_pred cccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHH-HHHH--HHcCCCCccEEeeecCCCCCccC------
Q 018344 32 VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDE-VIRD--MVAGCPLIEYININNCPGLKSLQ------ 100 (357)
Q Consensus 32 i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~-~l~~--l~~~~~~L~~L~L~~c~~l~~l~------ 100 (357)
+..+++|++|+|++|.+.. +..+.++++|++|+|++|.+... .++. ....+++|++|++++|. ++.+.
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH
Confidence 3468899999999998765 45778999999999999986432 2222 12578999999999986 44322
Q ss_pred cCCCCCccEEEecccCC-Cc-ceeEee---cceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccCC
Q 018344 101 LLGLNKLKEIKLDSNRC-GL-ERVYIN---GVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELP 174 (357)
Q Consensus 101 l~~~~~L~~L~l~~c~~-~l-~~~~~~---~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 174 (357)
+..+++|++|++++|.. .. +..... .++|++|+++++.+.. ...+ .++|+.|++++|.+++- +. +..++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~--~~-~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRA--PQ-PDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSC--CC-TTSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCC--ch-hhhCC
Confidence 23458999999999873 11 111112 3799999998854431 1222 37899999999998642 22 57889
Q ss_pred ccceeeccccc
Q 018344 175 FLEYLALHYCM 185 (357)
Q Consensus 175 ~L~~L~l~~~~ 185 (357)
+|+.|++++++
T Consensus 295 ~L~~L~L~~N~ 305 (310)
T 4glp_A 295 EVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECSSTT
T ss_pred CccEEECcCCC
Confidence 99999997654
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.01 E-value=3.7e-10 Score=98.92 Aligned_cols=146 Identities=12% Similarity=0.168 Sum_probs=107.9
Q ss_pred hCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344 10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN 89 (357)
Q Consensus 10 ~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 89 (357)
...++.++ ++++....+| .+..+++|++|++++|.+.....+.++++|++|+|++|.++. ++.+ .. ++|++|+
T Consensus 40 l~~L~~L~--l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFN--GDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLF 112 (263)
T ss_dssp HTTCSEEE--CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEE
T ss_pred cCcCcEEE--CcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC--cCcc-cc-CcccEEE
Confidence 34566554 5666677888 678899999999999988772238899999999999998743 2222 23 8999999
Q ss_pred eecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH
Q 018344 90 INNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD 163 (357)
Q Consensus 90 L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~ 163 (357)
+++|. ++.+ .+..+++|+.|++++|...-......+++|+.|+++++.+.....+..+++|+.|++++|.++.
T Consensus 113 L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 113 LDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEEC
T ss_pred ccCCc-cCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccC
Confidence 99986 3333 4556789999999999731111222478999999998655422456788999999999998854
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.00 E-value=3.5e-10 Score=96.29 Aligned_cols=143 Identities=20% Similarity=0.157 Sum_probs=93.2
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
.++++++....+|..+.. .+++|+|++|.+.. + ..+.++++|++|+|++|.++.-. +..+..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCC
Confidence 567777778889986643 57899999988765 2 34788999999999999874321 224567899999999987
Q ss_pred CCCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHh
Q 018344 94 PGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQI 170 (357)
Q Consensus 94 ~~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 170 (357)
.. +.+. +.++++|++|++++|.. . .+ .+ ..+.++++|+.|++++|.+++- .+..+
T Consensus 92 ~l-~~~~~~~~~~l~~L~~L~Ls~N~l-~-~~----------------~~--~~~~~l~~L~~L~L~~N~l~~~-~~~~~ 149 (220)
T 2v70_A 92 RL-ENVQHKMFKGLESLKTLMLRSNRI-T-CV----------------GN--DSFIGLSSVRLLSLYDNQITTV-APGAF 149 (220)
T ss_dssp CC-CCCCGGGGTTCSSCCEEECTTSCC-C-CB----------------CT--TSSTTCTTCSEEECTTSCCCCB-CTTTT
T ss_pred cc-CccCHhHhcCCcCCCEEECCCCcC-C-eE----------------CH--hHcCCCccCCEEECCCCcCCEE-CHHHh
Confidence 63 3322 44668888888888761 1 00 01 2344556666666666665331 12344
Q ss_pred ccCCccceeecccc
Q 018344 171 SELPFLEYLALHYC 184 (357)
Q Consensus 171 ~~~~~L~~L~l~~~ 184 (357)
..+++|+.|+++++
T Consensus 150 ~~l~~L~~L~L~~N 163 (220)
T 2v70_A 150 DTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCCEEECCSC
T ss_pred cCCCCCCEEEecCc
Confidence 55666666666543
No 110
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.94 E-value=2.8e-09 Score=104.64 Aligned_cols=124 Identities=21% Similarity=0.261 Sum_probs=90.8
Q ss_pred CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.+++| |++++....+|+ .+.++++|++|+|++|.+.. |..+.++++|++|+|++|.++.- .+..+.++++|++|
T Consensus 53 ~~~~L--dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEE--ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEE
T ss_pred CCCEE--EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEE
Confidence 45554 567888889986 56679999999999998766 45689999999999999987431 12346789999999
Q ss_pred eeecCCCCCcc---CcCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecCC
Q 018344 89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLE 139 (357)
Q Consensus 89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~ 139 (357)
++++|. ++.+ .+.++++|++|++++|... .......+++|++|+++++.+
T Consensus 130 ~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 130 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 999986 3333 3567789999999998721 112222356677777766433
No 111
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.93 E-value=1.3e-09 Score=89.37 Aligned_cols=132 Identities=16% Similarity=0.029 Sum_probs=85.4
Q ss_pred ccccCCCccEEEeeccccCCCCCccCC-CCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC---cCCCCC
Q 018344 31 IVFYLKSIYVLDFEFCKLEPPRSTVTL-FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNK 106 (357)
Q Consensus 31 ~i~~~~~L~~L~Ls~~~~~~p~~~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---l~~~~~ 106 (357)
.+.++.+|++|++++|.+.....+..+ ++|++|++++|.++.- ..+..+++|++|++++|. ++.+. +..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCC
Confidence 345677889999998877662234444 4888888888877432 235667788888888775 34332 134567
Q ss_pred ccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH--HHHHHHhccCCccceeecccc
Q 018344 107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLALHYC 184 (357)
Q Consensus 107 L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~l~~~ 184 (357)
|++|++++|.. . .++....+..+++|+.|++++|.+++ ......+..+|+|+.|+++.+
T Consensus 90 L~~L~L~~N~i--~-----------------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNNSL--V-----------------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSCCC--C-----------------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCCcC--C-----------------cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 77777777651 0 11100145677888889998888754 111235778888898888765
Q ss_pred c
Q 018344 185 M 185 (357)
Q Consensus 185 ~ 185 (357)
.
T Consensus 151 ~ 151 (176)
T 1a9n_A 151 K 151 (176)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.92 E-value=1.7e-09 Score=98.82 Aligned_cols=194 Identities=11% Similarity=0.019 Sum_probs=127.5
Q ss_pred CCCeEEEEEecCCcceecCcc-cccCCCccEEEeeccccCC---CCCccCCCCCce-EEeeccccCHHHHHHHHcCCCCc
Q 018344 11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRK-LCLSFVHVDDEVIRDMVAGCPLI 85 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~-i~~~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~-L~L~~~~~~~~~l~~l~~~~~~L 85 (357)
+.+++|+ ++++....+|+. +.++++|++|+|++|.+.. +..+.+++++++ +.++.|.+..- .+..+..+++|
T Consensus 30 ~~l~~L~--Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELR--FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEE--EESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEE--ccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 4566665 567778899976 4569999999999998644 346788998886 45556655321 13346789999
Q ss_pred cEEeeecCCCCCccC---cCCCCCccEEEecccCCCcceeEe----e-cceeeEEEEeecCCCc-eeeccccccccceee
Q 018344 86 EYININNCPGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYI----N-GVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRL 156 (357)
Q Consensus 86 ~~L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~----~-~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L 156 (357)
++|++++|.. +.+. .....++..|++.++. .+..+.. . ...++.|.++++.+.. ........+|+++++
T Consensus 107 ~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 107 QYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp CEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred cccccccccc-ccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence 9999999863 3221 2223567788887765 4443321 1 2357888888754431 122234467888988
Q ss_pred cc-cccCHHHHHHHhccCCccceeeccccccccccccc-cccccEEEcccccccccc
Q 018344 157 DG-LSITDKWLYNQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEF 211 (357)
Q Consensus 157 ~~-~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~~ 211 (357)
.+ +.++ ......+.++++|+.|+++++ .+..+|.. ..+|++|.+.++.+++++
T Consensus 185 ~~~n~l~-~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 185 SDNNNLE-ELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp TTCTTCC-CCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred ccCCccc-CCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence 75 4442 222345788899999999755 56666654 677888888888777654
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.92 E-value=1.4e-09 Score=105.45 Aligned_cols=158 Identities=20% Similarity=0.168 Sum_probs=112.4
Q ss_pred CCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344 12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI 90 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L 90 (357)
.++.| +++++....+| ..+++|++|++++|.+.. |. +.+ +|++|+|++|.++. ++. .+++|+.|++
T Consensus 81 ~L~~L--~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 81 QITVL--EITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINA 147 (571)
T ss_dssp TCSEE--ECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred CCCEE--ECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence 45555 45677777888 347899999999998877 54 444 99999999998743 333 6889999999
Q ss_pred ecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccc-------cceeecccccC
Q 018344 91 NNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNL-------THLRLDGLSIT 162 (357)
Q Consensus 91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L-------~~L~L~~~~i~ 162 (357)
++|. ++.++. .+++|++|++++|.. .++. +. ++|+.|+++++.+.....+.. +| +.|++++|.++
T Consensus 148 s~N~-l~~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 148 DNNQ-LTMLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp CSSC-CSCCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC
T ss_pred CCCc-cCcCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce
Confidence 9986 444444 458999999999973 2333 22 899999999864431011332 57 99999999985
Q ss_pred HHHHHHHhccCCccceeeccccccccccc
Q 018344 163 DKWLYNQISELPFLEYLALHYCMKLRSIN 191 (357)
Q Consensus 163 ~~~~~~l~~~~~~L~~L~l~~~~~l~~l~ 191 (357)
. ++..+..+++|+.|++++|.....++
T Consensus 221 ~--lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 221 H--IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C--CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred e--cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 3 55556669999999998775444333
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.91 E-value=1.1e-09 Score=92.32 Aligned_cols=143 Identities=20% Similarity=0.150 Sum_probs=104.0
Q ss_pred CCeEEEEEecCCcceecCccc-ccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~~i-~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.++.++ ++++....+|... ..+++|++|++++|.+.. + ..+.++++|++|+|++|.++.. ....+..+++|++|
T Consensus 29 ~l~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLD--LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCcEEE--cCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence 455554 5666677788765 579999999999998776 3 3568899999999999987421 12335789999999
Q ss_pred eeecCCCCCccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCceeeccccccccceeecccccCH
Q 018344 89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD 163 (357)
Q Consensus 89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~ 163 (357)
++++|. ++.+. +..+++|++|++++|.. .... ....+++|++++++++.+. +.+++|+.|++..+.+++
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----CCTTTTHHHHHHHHHCTT
T ss_pred EcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----cCCCCHHHHHHHHHhCCc
Confidence 999986 44332 34568999999999873 1111 1224689999999886433 457789999888887754
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=5.6e-11 Score=99.53 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=88.0
Q ss_pred eEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeec
Q 018344 14 KELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN 92 (357)
Q Consensus 14 ~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~ 92 (357)
+...++...+....+|..+..+++|++|++++|.+.. | .+.++++|++|++++|.++ .++.....+++|++|++++
T Consensus 26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISY 102 (198)
T ss_dssp SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEE
T ss_pred heeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcC
Confidence 3344333334556666677778888888888887766 4 6777888888888888764 2344455567788888887
Q ss_pred CCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHH-------
Q 018344 93 CPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK------- 164 (357)
Q Consensus 93 c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~------- 164 (357)
|. ++.+ .+..+++|++|++++|.. ...+....+..+++|+.|++++|.+++.
T Consensus 103 N~-l~~l~~~~~l~~L~~L~l~~N~i-------------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 103 NQ-IASLSGIEKLVNLRVLYMSNNKI-------------------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp EE-CCCHHHHHHHHHSSEEEESEEEC-------------------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred Cc-CCcCCccccCCCCCEEECCCCcC-------------------CchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence 64 3322 122335566666665540 0001001355677788888888776432
Q ss_pred --HHHHHhccCCccceee
Q 018344 165 --WLYNQISELPFLEYLA 180 (357)
Q Consensus 165 --~~~~l~~~~~~L~~L~ 180 (357)
.....+..+|+|+.|+
T Consensus 163 ~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHHhCCCcEEEC
Confidence 1223467778888776
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.89 E-value=8.7e-10 Score=87.65 Aligned_cols=126 Identities=29% Similarity=0.343 Sum_probs=85.1
Q ss_pred CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEE
Q 018344 56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDI 134 (357)
Q Consensus 56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l 134 (357)
..++|++|++++|.+++..++..+..+++|++|++++|. ++.+ .+..+++|++|++++|. ...
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~-i~~-------------- 78 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR-VSG-------------- 78 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC-CCS--------------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc-ccc--------------
Confidence 457889999998877533455556778888888888875 3332 34455778888887776 100
Q ss_pred eecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc-------ccccccEEEcc
Q 018344 135 KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-------SSPRLKELVFE 203 (357)
Q Consensus 135 ~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-------~~~~L~~L~l~ 203 (357)
..| ..+.++++|++|++++|.+++-..+..+..+++|+.|++++|. +..++. ..++|+.|+++
T Consensus 79 ---~~~--~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 ---GLE--VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ---CTH--HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ---hHH--HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 012 2345678899999999998764444678899999999997764 444332 14667776654
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.89 E-value=1.3e-09 Score=99.94 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=97.2
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCcc-CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTV-TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
.++.++.....+|..+. ..++.|+|++|.+.. +..+. ++++|++|+|++|.++.-. +..+..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCC
Confidence 35566666777887654 358888888887765 33455 7888888888888764221 223567888888888887
Q ss_pred CCCCcc---CcCCCCCccEEEecccCCC-c-ceeEeecceeeEEEEeecCCCc-eee-c---cccccccceeecccccCH
Q 018344 94 PGLKSL---QLLGLNKLKEIKLDSNRCG-L-ERVYINGVNVHSVDIKVYLEPC-EVN-V---SSCKNLTHLRLDGLSITD 163 (357)
Q Consensus 94 ~~l~~l---~l~~~~~L~~L~l~~c~~~-l-~~~~~~~p~L~~L~l~~~~~~~-~~~-~---~~~~~L~~L~L~~~~i~~ 163 (357)
. ++.+ .+.++++|+.|++++|... . ......+++|++|+++++.+.. ... + ..+++|+.|+|++|.++.
T Consensus 99 ~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 H-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred c-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 6 4433 2345678888888887621 1 0111235677777776643321 011 2 346677777777777643
Q ss_pred HHHHHHhccCCc--cceeeccc
Q 018344 164 KWLYNQISELPF--LEYLALHY 183 (357)
Q Consensus 164 ~~~~~l~~~~~~--L~~L~l~~ 183 (357)
- ....+..++. ++.|++++
T Consensus 178 l-~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 178 L-PLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp C-CHHHHHHSCHHHHTTEECCS
T ss_pred c-CHHHhhhccHhhcceEEecC
Confidence 1 1223445555 36666654
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.88 E-value=3.6e-09 Score=90.03 Aligned_cols=127 Identities=16% Similarity=0.212 Sum_probs=93.1
Q ss_pred CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
.+++|+ ++++....+|. .+..+++|++|+|++|.+.. |..+.++++|++|+|++|.++.- ....+..+++|++|
T Consensus 33 ~l~~L~--l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 33 TITEIR--LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLL 109 (220)
T ss_dssp TCCEEE--CCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCEEE--CCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEE
Confidence 455554 56777778886 45669999999999998765 66889999999999999987421 12345679999999
Q ss_pred eeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344 89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~ 162 (357)
+|++|. ++.+ .+.++++|+.|++++|.. . .++ ...+..+++|+.|++++|.+.
T Consensus 110 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-----------------~~~-~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 110 LLNANK-INCLRVDAFQDLHNLNLLSLYDNKL--Q-----------------TIA-KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-----------------CCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC--C-----------------EEC-HHHHhCCCCCCEEEeCCCCcC
Confidence 999986 3333 344568899999988861 0 111 023566788999999988763
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.84 E-value=1.1e-09 Score=88.87 Aligned_cols=128 Identities=28% Similarity=0.314 Sum_probs=88.6
Q ss_pred CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEE
Q 018344 56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDI 134 (357)
Q Consensus 56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l 134 (357)
..++|++|++++|.+++..++..+..+++|++|++++|. ++.+ .+..+++|++|++++|. ...
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~-------------- 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFG-------------- 85 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCS--------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-Cch--------------
Confidence 457899999999877533455556778889999998886 3333 34455778888887776 100
Q ss_pred eecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc-------ccccccEEEcccc
Q 018344 135 KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-------SSPRLKELVFERC 205 (357)
Q Consensus 135 ~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-------~~~~L~~L~l~~c 205 (357)
..+ ..+..+++|+.|++++|.+++-.....+..+++|+.|++++|. +..++. ..++|+.|++++|
T Consensus 86 ---~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 86 ---GLD--MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ---CCC--HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ---HHH--HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 012 2344588899999999998653222567889999999997664 433332 2578899988888
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.82 E-value=3e-11 Score=117.32 Aligned_cols=172 Identities=13% Similarity=0.088 Sum_probs=85.7
Q ss_pred ccCCCccEEEeeccccCC-CCCccCCCCCceEEeecccc------------CHHHHHHHHcCCCCccEEe-eecCCC--C
Q 018344 33 FYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV------------DDEVIRDMVAGCPLIEYIN-INNCPG--L 96 (357)
Q Consensus 33 ~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~------------~~~~l~~l~~~~~~L~~L~-L~~c~~--l 96 (357)
..+++|+.|+|+++.+.. |..++++++|+.|+++++.. .....+..++.+++|+.|+ ++.+.. +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 345666677777666544 55666666666666655420 0111223334445555554 222110 0
Q ss_pred CccC-----cCC--CCCccEEEecccCC-CcceeEeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHH
Q 018344 97 KSLQ-----LLG--LNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLY 167 (357)
Q Consensus 97 ~~l~-----l~~--~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~ 167 (357)
..+. +.. ...|+.|++++|.. .++. ...+++|+.|+++++.+. .+..++++++|+.|++++|.+++ ++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence 0000 000 02455555555542 1222 122455666666553221 11356667777777777777654 33
Q ss_pred HHhccCCccceeecccccccccc--ccc---cccccEEEccccccccc
Q 018344 168 NQISELPFLEYLALHYCMKLRSI--NIS---SPRLKELVFERCEELVE 210 (357)
Q Consensus 168 ~l~~~~~~L~~L~l~~~~~l~~l--~~~---~~~L~~L~l~~c~~L~~ 210 (357)
.++++++|+.|++++| .+..+ |.. .++|+.|+++++ .++.
T Consensus 503 -~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~ 547 (567)
T 1dce_A 503 -GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQ 547 (567)
T ss_dssp -GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGG
T ss_pred -ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCC
Confidence 4667777777777544 33333 222 456777777766 4443
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.81 E-value=1.2e-08 Score=86.82 Aligned_cols=127 Identities=13% Similarity=0.166 Sum_probs=93.2
Q ss_pred CCeEEEEEecCCcceecCc-c-cccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 12 NVKELKLDVGCCRIYNLPQ-I-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~-~-i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
.+++ |+++++....++. . +..+++|++|+|++|.+.. +..+.++++|++|+|++|.++.. .+..+..+++|++
T Consensus 33 ~~~~--L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 109 (220)
T 2v70_A 33 YTAE--LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKT 109 (220)
T ss_dssp TCSE--EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCE
T ss_pred CCCE--EEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCE
Confidence 3454 4567777777743 3 5679999999999998766 44789999999999999987422 1334678999999
Q ss_pred EeeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344 88 ININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~ 162 (357)
|+|++|.. +.+ .+.++++|+.|++++|.. .. ..+ ..+..+++|+.|++++|.++
T Consensus 110 L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l--~~----------------~~~--~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 110 LMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQI--TT----------------VAP--GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EECTTSCC-CCBCTTSSTTCTTCSEEECTTSCC--CC----------------BCT--TTTTTCTTCCEEECCSCCEE
T ss_pred EECCCCcC-CeECHhHcCCCccCCEEECCCCcC--CE----------------ECH--HHhcCCCCCCEEEecCcCCc
Confidence 99999873 332 345668899999998861 00 111 35667888999999998875
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.80 E-value=8.1e-09 Score=85.81 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=88.0
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC-CC--CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
.++++++....+|..+.. +|++|+++++.+.. +. .+..+++|++|+|++|.++.. .+..+..+++|++|+|++|
T Consensus 12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCC
Confidence 456777788889987755 89999999998766 33 378999999999999987432 1334667899999999987
Q ss_pred CCCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344 94 PGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 94 ~~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~ 162 (357)
. ++.+. +.++++|++|++++|.. . . ..+ ..+..+++|+.|++++|.++
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l-~-~----------------~~~--~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQI-S-C----------------VMP--GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCC-C-E----------------ECT--TSSTTCTTCCEEECTTCCBC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcC-C-e----------------eCH--HHhhcCCCCCEEEeCCCCcc
Confidence 6 33332 44567888888887761 0 0 011 24566778889999888775
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.79 E-value=1.1e-08 Score=87.56 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=92.2
Q ss_pred CCCeEEEEEecCCcceec-CcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
..++.|+ ++++....+ |..+..+++|++|+|++|.+.. | ..+.++++|++|+|++|.++.- ....+..+++|++
T Consensus 40 ~~L~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILY--LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCEEE--cCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence 3455554 566666677 4556779999999999998866 3 4578999999999999987421 1234568999999
Q ss_pred EeeecCCCCCcc--CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344 88 ININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 88 L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~ 162 (357)
|++++|. ++.+ .+..+++|+.|++++|.. . .++ ...+..+++|+.|++.+|.+.
T Consensus 117 L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l--~-----------------~~~-~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 117 LFMCCNK-LTELPRGIERLTHLTHLALDQNQL--K-----------------SIP-HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSSC-CCSCCTTGGGCTTCSEEECCSSCC--C-----------------CCC-TTTTTTCTTCCEEECTTSCBC
T ss_pred EeccCCc-ccccCcccccCCCCCEEECCCCcC--C-----------------ccC-HHHHhCCCCCCEEEeeCCCcc
Confidence 9999986 4444 234568899999888761 0 111 024567788999999998875
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.77 E-value=6.2e-09 Score=95.41 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=104.7
Q ss_pred EEecCCcceecCcccc--cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 18 LDVGCCRIYNLPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~--~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
|+++++....+|...+ .+++|++|+|++|.+.. +..+.++++|++|+|++|.+..- ....+..+++|++|+|++|
T Consensus 44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSS
T ss_pred EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCC
Confidence 5667888888887765 79999999999998766 45688999999999999987421 1234678999999999998
Q ss_pred CCCCcc---CcCCCCCccEEEecccCC-CcceeE----eecceeeEEEEeecCCCc--eeecccccc--ccceeeccccc
Q 018344 94 PGLKSL---QLLGLNKLKEIKLDSNRC-GLERVY----INGVNVHSVDIKVYLEPC--EVNVSSCKN--LTHLRLDGLSI 161 (357)
Q Consensus 94 ~~l~~l---~l~~~~~L~~L~l~~c~~-~l~~~~----~~~p~L~~L~l~~~~~~~--~~~~~~~~~--L~~L~L~~~~i 161 (357)
. +..+ .+.++++|++|++++|.. .+.... ...++|+.|+++++.+.. ...+..+++ ++.|++++|.+
T Consensus 123 ~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 123 H-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred c-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 7 3333 355678999999999973 221111 347899999999865431 123445555 48899999887
Q ss_pred C
Q 018344 162 T 162 (357)
Q Consensus 162 ~ 162 (357)
.
T Consensus 202 ~ 202 (361)
T 2xot_A 202 E 202 (361)
T ss_dssp E
T ss_pred c
Confidence 4
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.77 E-value=1.7e-08 Score=83.95 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=83.8
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
.++.+++....+|..+. ++|++|+++++.+.. |..+.++++|++|+|++|.++.- .+..+.++++|++|+|++|.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-
Confidence 46677777788887664 589999999988766 66788899999999999877421 12335678888888888876
Q ss_pred CCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344 96 LKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT 162 (357)
Q Consensus 96 l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~ 162 (357)
++.+ .+.++++|+.|++++|.. . .++ ...+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l--~-----------------~~~-~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDI--S-----------------VVP-EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCC--C-----------------BCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCC--C-----------------eeC-hhhhhcCccccEEEeCCCCee
Confidence 3333 244557788888877751 0 111 013556677888888877663
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.71 E-value=1.1e-08 Score=99.44 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=17.3
Q ss_pred eccccccccceeecccccCHH--HHHHHhccCCccceee
Q 018344 144 NVSSCKNLTHLRLDGLSITDK--WLYNQISELPFLEYLA 180 (357)
Q Consensus 144 ~~~~~~~L~~L~L~~~~i~~~--~~~~l~~~~~~L~~L~ 180 (357)
.++++++|+.|++++|.+++. ....++..+|+|+.|+
T Consensus 528 ~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 344555555666655555331 1122334455555553
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.71 E-value=3.6e-08 Score=80.60 Aligned_cols=122 Identities=21% Similarity=0.226 Sum_probs=84.1
Q ss_pred EEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
++++.+....+|..+. ++|++|+++++.+.. + ..+.++++|++|++++|.++.- ....+..+++|++|++++|.
T Consensus 12 l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~- 87 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK- 87 (177)
T ss_dssp EECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred EEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC-
Confidence 4566677788887654 689999999988766 3 3567899999999999977421 12335678899999998875
Q ss_pred CCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH
Q 018344 96 LKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD 163 (357)
Q Consensus 96 l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~ 163 (357)
++.+. +..+++|++|++++|.. . ..+ ...+..+++|++|++++|.++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l--~-----------------~~~-~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQL--K-----------------SVP-DGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCC--S-----------------CCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcc--e-----------------EeC-HHHhcCCcccCEEEecCCCeec
Confidence 33332 34557888888887761 0 111 0134567788888898887753
No 128
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.68 E-value=3e-08 Score=80.34 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=74.5
Q ss_pred ceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc-cCHHHHHHHHcC---CCCccEEeeecCCCCCc
Q 018344 25 IYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAG---CPLIEYININNCPGLKS 98 (357)
Q Consensus 25 ~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~---~~~L~~L~L~~c~~l~~ 98 (357)
...+|.....--.|++|++++|.+.. -..+.++++|++|+|++|. +++..+..+... +++|++|+|++|..++.
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 45778654444579999999998544 2345789999999999996 699999988763 67899999999998775
Q ss_pred c---CcCCCCCccEEEecccCCCcc
Q 018344 99 L---QLLGLNKLKEIKLDSNRCGLE 120 (357)
Q Consensus 99 l---~l~~~~~L~~L~l~~c~~~l~ 120 (357)
- .+..+++|++|++++|. .++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~-~It 153 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP-GVK 153 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT-TCC
T ss_pred HHHHHHhcCCCCCEEECCCCC-CCC
Confidence 3 23457899999999998 443
No 129
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=3.3e-09 Score=97.59 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=82.5
Q ss_pred CCccEEEeeccccCC--CCCcc-----CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC---c----
Q 018344 36 KSIYVLDFEFCKLEP--PRSTV-----TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---L---- 101 (357)
Q Consensus 36 ~~L~~L~Ls~~~~~~--p~~~~-----~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---l---- 101 (357)
++|+.|+|++|.+.. ...+. ..++|++|+|++|.+++..+..+...+++|++|+|++|. ++... +
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence 456677777666543 11111 235677777777766666666555555666777776664 22110 0
Q ss_pred -CCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHH---HHHHhccCCccc
Q 018344 102 -LGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW---LYNQISELPFLE 177 (357)
Q Consensus 102 -~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~---~~~l~~~~~~L~ 177 (357)
...++|++|++++|...-.... .....+..+++|++|+|++|.+++.. +...+...++|+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~----------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVA----------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHH----------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHH----------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence 1124566666666651000000 00012234566777777777776533 344456667777
Q ss_pred eeecccccccc----cccc---ccccccEEEccccccccc
Q 018344 178 YLALHYCMKLR----SINI---SSPRLKELVFERCEELVE 210 (357)
Q Consensus 178 ~L~l~~~~~l~----~l~~---~~~~L~~L~l~~c~~L~~ 210 (357)
.|++++|.--. .+.. ..++|++|++++| .+++
T Consensus 215 ~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCH
Confidence 77776553211 1111 1466777777777 4554
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.62 E-value=8.9e-09 Score=102.99 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=57.2
Q ss_pred CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--cCCCCCccEEEecccCCC-cceeEeeccee
Q 018344 53 STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKEIKLDSNRCG-LERVYINGVNV 129 (357)
Q Consensus 53 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l~~~~~L~~L~l~~c~~~-l~~~~~~~p~L 129 (357)
.+..+++|++|+|++|.+. .++.-+..+++|++|+|++|. ++.++ +.++++|+.|++++|.+. ++.....+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 4555666666666666542 122223355666666666654 22221 334456666666666521 11111234566
Q ss_pred eEEEEeecCCC-ceeeccccccccceeecccccCH
Q 018344 130 HSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITD 163 (357)
Q Consensus 130 ~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~ 163 (357)
++|+++++.+. ....++++++|+.|+|++|.+++
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 66666653221 11457888899999999998864
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.56 E-value=5.2e-08 Score=79.63 Aligned_cols=125 Identities=13% Similarity=0.073 Sum_probs=88.6
Q ss_pred EEEecCCcceecCcccccCC-CccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLK-SIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG 95 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~-~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 95 (357)
.++++++....+|. +..+. +|++|++++|.+.....+..+++|++|++++|.++.- .+.++..+++|++|++++|..
T Consensus 23 ~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 23 ELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp EEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCCC
T ss_pred EEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCcC
Confidence 34566776777765 55554 9999999999876644788999999999999988532 123457899999999999863
Q ss_pred CCccC----cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCH
Q 018344 96 LKSLQ----LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITD 163 (357)
Q Consensus 96 l~~l~----l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~ 163 (357)
+.++ +..+++|+.|++++|.. . ..+. ...+..+++|+.|+++++...+
T Consensus 101 -~~~~~~~~l~~l~~L~~L~l~~N~i-~------------------~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 101 -VELGDLDPLASLKSLTYLCILRNPV-T------------------NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp -CCGGGGGGGGGCTTCCEEECCSSGG-G------------------GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred -CcchhhHhhhcCCCCCEEEecCCCC-C------------------CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 4332 34567888888888761 0 1110 0135678889999998887744
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.54 E-value=1.6e-07 Score=77.99 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=78.9
Q ss_pred CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344 11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI 88 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 88 (357)
..+++|+ ++++....+|..+.++++|++|+|++|.+.. +..+.++++|++|+|++|.++... +..+..+++|++|
T Consensus 31 ~~l~~L~--L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELY--LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEE--CCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred CCCCEEE--CCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence 3455554 5677778999888899999999999998876 456899999999999999874321 2346688999999
Q ss_pred eeecCCCCCccC---cCCCCCccEEEecccC
Q 018344 89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNR 116 (357)
Q Consensus 89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~ 116 (357)
+|++|. ++.+. +..+++|+.|++++|.
T Consensus 108 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 108 SLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 999986 44433 3456788888888776
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.54 E-value=1.3e-07 Score=76.81 Aligned_cols=96 Identities=19% Similarity=0.155 Sum_probs=74.2
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.++++++....+|..+. ++|++|+|++|.+.. |..+.++++|++|+|++|.++.- .+..+..+++|++|+|++|.
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc
Confidence 46678888889998774 789999999998876 55688999999999999987421 12345688999999999986
Q ss_pred CCCccC---cCCCCCccEEEecccC
Q 018344 95 GLKSLQ---LLGLNKLKEIKLDSNR 116 (357)
Q Consensus 95 ~l~~l~---l~~~~~L~~L~l~~c~ 116 (357)
++.+. +..+++|++|++++|.
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 -LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 44432 4456788888888776
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.50 E-value=2.6e-07 Score=75.32 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=73.6
Q ss_pred EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344 17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP 94 (357)
Q Consensus 17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 94 (357)
.++++++....+|..+. ++|++|+|++|.+.. |..+.++++|++|+|++|.++.- ....+..+++|++|+|++|.
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence 45677777889998775 789999999998876 45788999999999999987431 12235678999999999876
Q ss_pred CCCccC---cCCCCCccEEEecccC
Q 018344 95 GLKSLQ---LLGLNKLKEIKLDSNR 116 (357)
Q Consensus 95 ~l~~l~---l~~~~~L~~L~l~~c~ 116 (357)
++.+. +..+++|+.|++++|.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred -cceeCHHHhccccCCCEEEeCCCC
Confidence 44432 4456788888888776
No 135
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=4.2e-07 Score=83.03 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=17.6
Q ss_pred cccccceeecccccCHHHHHHHh---ccCCccceeecccc
Q 018344 148 CKNLTHLRLDGLSITDKWLYNQI---SELPFLEYLALHYC 184 (357)
Q Consensus 148 ~~~L~~L~L~~~~i~~~~~~~l~---~~~~~L~~L~l~~~ 184 (357)
+++|++|+|+.|.+++.....+. .++++|+.|+++.|
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 44555555555555543322222 23455555555433
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.45 E-value=2.2e-07 Score=77.00 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=77.3
Q ss_pred CCeEEEEEecCCcceecCcc--cccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 12 NVKELKLDVGCCRIYNLPQI--VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~~--i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
.++++ +++++....+|.. +..+++|++|+|++|.+.. |..+.++++|++|+|++|.++... +..+..+++|++
T Consensus 30 ~l~~L--~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTEL--LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT 106 (192)
T ss_dssp TCSEE--ECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred CCCEE--ECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCE
Confidence 45555 4677777788864 6789999999999998876 567899999999999999874321 223567899999
Q ss_pred EeeecCCCCCcc---CcCCCCCccEEEecccC
Q 018344 88 ININNCPGLKSL---QLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~ 116 (357)
|++++|.. +.+ .+..+++|++|++++|.
T Consensus 107 L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 107 LNLYDNQI-SCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EECCSSCC-CEECTTSSTTCTTCCEEECTTCC
T ss_pred EECCCCcC-CeeCHHHhhcCCCCCEEEeCCCC
Confidence 99999863 322 34456789999998876
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.36 E-value=7.3e-07 Score=72.71 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCCeEEEEEecCCcceecCccc-ccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP~~i-~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
..+++++ ++++....+|... ..+++|++|++++|.+.. | ..+.++++|++|++++|.++.. .+..+..+++|++
T Consensus 28 ~~l~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLE--LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEE--eCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence 3556555 5666677888765 568999999999998876 3 3568999999999999987421 1234567899999
Q ss_pred EeeecCCCCCccC---cCCCCCccEEEecccC
Q 018344 88 ININNCPGLKSLQ---LLGLNKLKEIKLDSNR 116 (357)
Q Consensus 88 L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~ 116 (357)
|++++|. ++.+. +..+++|++|++++|.
T Consensus 105 L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 105 LALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 9999985 44433 2345788899888876
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.36 E-value=1.6e-07 Score=93.87 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=41.6
Q ss_pred ecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCc
Q 018344 20 VGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS 98 (357)
Q Consensus 20 ~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~ 98 (357)
++++....+|..++++++|++|+|++|.+.. |..+.++++|++|+|++|.++ .++..++++++|++|+|++|. ++.
T Consensus 231 Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~ 307 (727)
T 4b8c_D 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNM-VTT 307 (727)
T ss_dssp CTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSC-CCC
T ss_pred CCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCC-CCc
Confidence 3444444445444445555555555544433 334444555555555555443 123233444455555554443 222
Q ss_pred c--CcCCCCCccEEEecccC
Q 018344 99 L--QLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 99 l--~l~~~~~L~~L~l~~c~ 116 (357)
+ .+..+++|+.|++++|.
T Consensus 308 lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSC
T ss_pred cChhhhcCCCccEEeCCCCc
Confidence 2 12333445555554444
No 139
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=1.8e-07 Score=75.72 Aligned_cols=42 Identities=12% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCc
Q 018344 56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS 98 (357)
Q Consensus 56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~ 98 (357)
.-..|++|++++|.+++..+..+ .+|++|++|+|++|..++.
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCH
T ss_pred CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCH
Confidence 33578899999988887777664 6788888888888876554
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.27 E-value=7.4e-08 Score=80.30 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=66.5
Q ss_pred CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCc--CCCCCccEEEecccCCCcceeEeecceee
Q 018344 53 STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQL--LGLNKLKEIKLDSNRCGLERVYINGVNVH 130 (357)
Q Consensus 53 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l--~~~~~L~~L~l~~c~~~l~~~~~~~p~L~ 130 (357)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|. ++.++- ..+++|++|++++|.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-------------- 104 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-------------- 104 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE--------------
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc--------------
Confidence 56678888888888887633 23 34566777788777764 222211 112455555555543
Q ss_pred EEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344 131 SVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM 185 (357)
Q Consensus 131 ~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 185 (357)
+.....+..+++|+.|++++|.+++-.....+..+++|+.|++++|.
T Consensus 105 --------l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 105 --------IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp --------CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred --------CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 11001456678889999998888653222467788888988887654
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=4.3e-07 Score=83.44 Aligned_cols=151 Identities=21% Similarity=0.207 Sum_probs=90.2
Q ss_pred CCCCceEEeeccccCHHHHHHH---Hc-CCCCccEEeeecCCCCCccCc----CCCCCccEEEecccCCCcceeEeecce
Q 018344 57 LFSLRKLCLSFVHVDDEVIRDM---VA-GCPLIEYININNCPGLKSLQL----LGLNKLKEIKLDSNRCGLERVYINGVN 128 (357)
Q Consensus 57 l~~L~~L~L~~~~~~~~~l~~l---~~-~~~~L~~L~L~~c~~l~~l~l----~~~~~L~~L~l~~c~~~l~~~~~~~p~ 128 (357)
.+.|++|+|++|.++......+ +. .+++|++|+|++|. +....+ ..+++|++|++++|...-....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~----- 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACK----- 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-----
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-----
Confidence 5678888888888765544333 33 23678888888875 222111 1124677777776651000000
Q ss_pred eeEEEEeecCCCceeec-cccccccceeecccccCHHH---HHHHhccCCccceeecccccccccc-----c---ccccc
Q 018344 129 VHSVDIKVYLEPCEVNV-SSCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCMKLRSI-----N---ISSPR 196 (357)
Q Consensus 129 L~~L~l~~~~~~~~~~~-~~~~~L~~L~L~~~~i~~~~---~~~l~~~~~~L~~L~l~~~~~l~~l-----~---~~~~~ 196 (357)
.....+ ...++|++|+|++|.+++.. +...+..+++|+.|++++|. +... . ...++
T Consensus 145 -----------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 145 -----------DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp -----------HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSC
T ss_pred -----------HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCC
Confidence 000011 23567999999999997633 44556789999999998765 3221 1 12468
Q ss_pred ccEEEccccccccccc---c-----cCCCcceEEeeee
Q 018344 197 LKELVFERCEELVEFE---L-----DTPNLSIFKCFNY 226 (357)
Q Consensus 197 L~~L~l~~c~~L~~~~---i-----~~~~L~~~~~~~~ 226 (357)
|++|++++| .+++.. + ..++|+.+...+.
T Consensus 213 L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 213 LQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred cCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 999999999 676532 1 2356666655443
No 142
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=1.1e-06 Score=80.14 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=95.1
Q ss_pred CCCCCceEEeeccccC--------HHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEecccCCCcc---eeE-
Q 018344 56 TLFSLRKLCLSFVHVD--------DEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLE---RVY- 123 (357)
Q Consensus 56 ~l~~L~~L~L~~~~~~--------~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~---~~~- 123 (357)
.+++|+.|.+..+... ...+..++..+|+|+.|++++|..+....+. +++|++|++..|..... .+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHH
Confidence 4667777766543211 1135567788999999999987433322232 58999999987762111 111
Q ss_pred eecceeeEEEEeec------C--C-Cc--eeeccccccccceeecccccCHHHHHHHh--ccCCccceeeccccccccc-
Q 018344 124 INGVNVHSVDIKVY------L--E-PC--EVNVSSCKNLTHLRLDGLSITDKWLYNQI--SELPFLEYLALHYCMKLRS- 189 (357)
Q Consensus 124 ~~~p~L~~L~l~~~------~--~-~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~--~~~~~L~~L~l~~~~~l~~- 189 (357)
..+|+|++|.+... . . .. ......+++|+.|++.++.+.+.....+. ..+|+|+.|+++.+ .+..
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~ 294 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDE 294 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChH
Confidence 25799999988521 1 1 00 01113578999999999998765444333 35789999999654 3432
Q ss_pred ----ccc---ccccccEEEccccccccc
Q 018344 190 ----INI---SSPRLKELVFERCEELVE 210 (357)
Q Consensus 190 ----l~~---~~~~L~~L~l~~c~~L~~ 210 (357)
+.. ..++|+.|++++| .+++
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred HHHHHHhhcccCCcceEEECCCC-cCCH
Confidence 221 1478999999888 4654
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=1.8e-06 Score=77.87 Aligned_cols=142 Identities=12% Similarity=0.139 Sum_probs=83.3
Q ss_pred CCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeec-----------------CCC
Q 018344 35 LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN-----------------CPG 95 (357)
Q Consensus 35 ~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~-----------------c~~ 95 (357)
|++|+.++|.+ .+.. +..|.+|++|+.++++.+.+..- -+..+..|.++..+.... |..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 79999999988 4433 45788999999999988854100 011223344444443222 111
Q ss_pred CC--------------------------ccCcC-------------CCCCccEEEecccCCCccee----EeecceeeEE
Q 018344 96 LK--------------------------SLQLL-------------GLNKLKEIKLDSNRCGLERV----YINGVNVHSV 132 (357)
Q Consensus 96 l~--------------------------~l~l~-------------~~~~L~~L~l~~c~~~l~~~----~~~~p~L~~L 132 (357)
++ .+.+. .+++|+++++.+|. +..+ ...+++|+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN--ATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC--CCEECTTTTTTCTTCCEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC--cceecHhhhhCCCCCCEE
Confidence 11 00000 15788888888764 2222 2246788888
Q ss_pred EEeecCCC-ceeecccccccc-ceeecccccCHHHHHHHhccCCccceeecc
Q 018344 133 DIKVYLEP-CEVNVSSCKNLT-HLRLDGLSITDKWLYNQISELPFLEYLALH 182 (357)
Q Consensus 133 ~l~~~~~~-~~~~~~~~~~L~-~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~ 182 (357)
.+.+.... ....|.+|++|+ .+.+.. .++. .-...+.+|++|+.+++.
T Consensus 256 ~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 256 KLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEEC
T ss_pred ECCcccceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeC
Confidence 88764211 123577888998 999876 3311 113457889999999884
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.11 E-value=2.7e-06 Score=77.14 Aligned_cols=96 Identities=21% Similarity=0.110 Sum_probs=73.7
Q ss_pred EEecCC-cceecCcccccCCCccEEEeec-cccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 18 LDVGCC-RIYNLPQIVFYLKSIYVLDFEF-CKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 18 l~~~~~-~~~~lP~~i~~~~~L~~L~Ls~-~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
++.++. ....+|. +..+++|+.|+|++ |.+.. + ..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCC
Confidence 466766 7889999 88899999999996 88766 4 4688999999999999987432 2345678999999999997
Q ss_pred CCCCccCcC--CCCCccEEEecccC
Q 018344 94 PGLKSLQLL--GLNKLKEIKLDSNR 116 (357)
Q Consensus 94 ~~l~~l~l~--~~~~L~~L~l~~c~ 116 (357)
. +..+... ....|+.|++.+|.
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred c-cceeCHHHcccCCceEEEeeCCC
Confidence 6 4444321 11348899988776
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=1.9e-06 Score=77.63 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=31.5
Q ss_pred cccccceeecccccCHHHHHHHhccCCccceeeccccccccccccc----ccccc-EEEccc
Q 018344 148 CKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS----SPRLK-ELVFER 204 (357)
Q Consensus 148 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~-~L~l~~ 204 (357)
|++|+.+++.++.++. .....+.+|++|+.+++..+ +..++.. +.+|+ .+.+.+
T Consensus 225 ~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 6677777777765532 11234677777888777542 4444322 45566 666654
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.99 E-value=6.8e-06 Score=66.51 Aligned_cols=81 Identities=20% Similarity=0.142 Sum_probs=62.7
Q ss_pred CCCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
..++. |+++++....+| ..+.++++|++|+|++|.+.. | ..+.++++|++|+|++|.++.- .+..+..+++|++
T Consensus 30 ~~l~~--L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSE--EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcE--EEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence 34555 456777788885 456679999999999998877 4 3568999999999999987421 1234678999999
Q ss_pred EeeecCC
Q 018344 88 ININNCP 94 (357)
Q Consensus 88 L~L~~c~ 94 (357)
|+|++|+
T Consensus 107 L~L~~N~ 113 (170)
T 3g39_A 107 IWLLNNP 113 (170)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9999986
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.98 E-value=5.5e-06 Score=67.36 Aligned_cols=81 Identities=22% Similarity=0.186 Sum_probs=62.5
Q ss_pred CCCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC-CC-CccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344 11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP-PR-STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY 87 (357)
Q Consensus 11 ~~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~-p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 87 (357)
..++.| +++++....+| ..+.++++|++|+|++|.+.. |. .+.++++|++|+|++|.++.- .+..+..+++|++
T Consensus 33 ~~L~~L--~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRL--WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEE--ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred CCCcEE--EeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence 345554 56777777885 456679999999999998877 43 468999999999999987421 1234677999999
Q ss_pred EeeecCC
Q 018344 88 ININNCP 94 (357)
Q Consensus 88 L~L~~c~ 94 (357)
|+|++|+
T Consensus 110 L~L~~N~ 116 (174)
T 2r9u_A 110 IYLYNNP 116 (174)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9999986
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.80 E-value=1.7e-05 Score=65.19 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=21.8
Q ss_pred ccccccceee--cccccCHHH---HHHHhccCCccceeecccc
Q 018344 147 SCKNLTHLRL--DGLSITDKW---LYNQISELPFLEYLALHYC 184 (357)
Q Consensus 147 ~~~~L~~L~L--~~~~i~~~~---~~~l~~~~~~L~~L~l~~~ 184 (357)
..++|++|++ ++|.++++. +...+...+.|+.|++++|
T Consensus 119 ~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 119 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3455666777 566666533 3344555566666666543
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.61 E-value=7.3e-05 Score=69.20 Aligned_cols=172 Identities=14% Similarity=0.176 Sum_probs=86.6
Q ss_pred ceecCcccccCCCccEEEeecc-ccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc---C
Q 018344 25 IYNLPQIVFYLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---Q 100 (357)
Q Consensus 25 ~~~lP~~i~~~~~L~~L~Ls~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l---~ 100 (357)
...++...+.-.+|+.+.+... ....+..|.+|++|+.++|..+.+.. ++.-...+.+|+.+.+... ++.+ .
T Consensus 146 i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~--l~~I~~~a 221 (401)
T 4fdw_A 146 LKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT--LKEIGSQA 221 (401)
T ss_dssp CCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT--CCEECTTT
T ss_pred ccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc--hheehhhH
Confidence 3344444333335666666541 11113456677777777776654411 1111112566777777532 3333 3
Q ss_pred cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc-eeeccccccccceeecccccCH----HHHHHHhccCCc
Q 018344 101 LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITD----KWLYNQISELPF 175 (357)
Q Consensus 101 l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~----~~~~~l~~~~~~ 175 (357)
..+|++|+.+++..+-..+..-.+...+|+.+.+....... ...|.+|++|+.+.+.++.+.. ......+.+|++
T Consensus 222 F~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 222 FLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp TTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred hhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 34556777777754320111111112467777775422110 1356788888888887665420 112345677888
Q ss_pred cceeeccccccccccccc----cccccEEEc
Q 018344 176 LEYLALHYCMKLRSINIS----SPRLKELVF 202 (357)
Q Consensus 176 L~~L~l~~~~~l~~l~~~----~~~L~~L~l 202 (357)
|+.+++.. .+..+... +.+|+.+.+
T Consensus 302 L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 302 LARFEIPE--SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp CCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred CCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence 88888752 23333321 345555555
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.31 E-value=0.00012 Score=66.06 Aligned_cols=76 Identities=18% Similarity=0.121 Sum_probs=57.6
Q ss_pred EEecC-CcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344 18 LDVGC-CRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93 (357)
Q Consensus 18 l~~~~-~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c 93 (357)
|++++ +....+|+ .+.++++|++|+|++|.+.. |..+.++++|++|+|++|.++.- .+..+..++ |+.|+|.+|
T Consensus 36 L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CCEEECCSS
T ss_pred EEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ceEEEeeCC
Confidence 45664 77888885 46679999999999998876 45779999999999999987421 122233444 999999987
Q ss_pred CC
Q 018344 94 PG 95 (357)
Q Consensus 94 ~~ 95 (357)
..
T Consensus 114 ~~ 115 (347)
T 2ifg_A 114 PL 115 (347)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.31 E-value=0.00028 Score=65.29 Aligned_cols=149 Identities=12% Similarity=0.148 Sum_probs=95.7
Q ss_pred cceecCcccc-cCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC-
Q 018344 24 RIYNLPQIVF-YLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ- 100 (357)
Q Consensus 24 ~~~~lP~~i~-~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~- 100 (357)
....++...+ +|.+|+.++++.+.+.. +.....+.+|+.+.|..+--... ...+.+|++|+.+.+..+ ++.+.
T Consensus 167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~--~~aF~~~~~L~~l~l~~~--l~~I~~ 242 (401)
T 4fdw_A 167 TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIG--SQAFLKTSQLKTIEIPEN--VSTIGQ 242 (401)
T ss_dssp TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEEC--TTTTTTCTTCCCEECCTT--CCEECT
T ss_pred CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheeh--hhHhhCCCCCCEEecCCC--ccCccc
Confidence 3455665444 59999999999876655 43333468999999986521110 223568999999999763 44432
Q ss_pred --cCCCCCccEEEecccCCCccee----EeecceeeEEEEeecCCC-------ceeeccccccccceeecccccCHHHHH
Q 018344 101 --LLGLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEP-------CEVNVSSCKNLTHLRLDGLSITDKWLY 167 (357)
Q Consensus 101 --l~~~~~L~~L~l~~c~~~l~~~----~~~~p~L~~L~l~~~~~~-------~~~~~~~~~~L~~L~L~~~~i~~~~~~ 167 (357)
..+ .+|+.+.+... +..+ ...+++|+.+.+.+.... ....|.+|++|+.+.+..+ ++. .-.
T Consensus 243 ~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~-I~~ 316 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI-LGQ 316 (401)
T ss_dssp TTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE-ECT
T ss_pred ccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE-Ehh
Confidence 334 57888888432 2222 235788999988774321 1235788999999999743 311 112
Q ss_pred HHhccCCccceeecc
Q 018344 168 NQISELPFLEYLALH 182 (357)
Q Consensus 168 ~l~~~~~~L~~L~l~ 182 (357)
..+.+|++|+.+++.
T Consensus 317 ~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTTTCCSCCEEEEC
T ss_pred hhhcCCCCccEEEEC
Confidence 357889999999984
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=6.1e-05 Score=61.77 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=72.1
Q ss_pred ccccCCCccEEEeecc-ccCCC------CCccCCCCCceEEeeccccCHHHHHH---HHcCCCCccEEeeecCCCCCcc-
Q 018344 31 IVFYLKSIYVLDFEFC-KLEPP------RSTVTLFSLRKLCLSFVHVDDEVIRD---MVAGCPLIEYININNCPGLKSL- 99 (357)
Q Consensus 31 ~i~~~~~L~~L~Ls~~-~~~~p------~~~~~l~~L~~L~L~~~~~~~~~l~~---l~~~~~~L~~L~L~~c~~l~~l- 99 (357)
.+..+++|++|+|++| .+... ..+...++|++|+|++|.+.++.... .+...++|++|+|++|.. ..-
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i-~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI-SGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC-CHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC-CHHH
Confidence 3445788999999998 66541 13446789999999999997765443 345678899999999863 221
Q ss_pred ------CcCCCCCccEEEe--cccCCCcc------eeEeecceeeEEEEeecCC
Q 018344 100 ------QLLGLNKLKEIKL--DSNRCGLE------RVYINGVNVHSVDIKVYLE 139 (357)
Q Consensus 100 ------~l~~~~~L~~L~l--~~c~~~l~------~~~~~~p~L~~L~l~~~~~ 139 (357)
.+...++|++|++ ++|..+.. +.....++|++|+++++.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1223468999999 66763211 1111346888888877543
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.07 E-value=0.0004 Score=60.18 Aligned_cols=105 Identities=21% Similarity=0.196 Sum_probs=63.0
Q ss_pred CCCCCce--EEeecccc--CHHHHHHHHcCCCCccEEeeecCCCCCccC-c----CCCCCccEEEecccCCCcceeEeec
Q 018344 56 TLFSLRK--LCLSFVHV--DDEVIRDMVAGCPLIEYININNCPGLKSLQ-L----LGLNKLKEIKLDSNRCGLERVYING 126 (357)
Q Consensus 56 ~l~~L~~--L~L~~~~~--~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~-l----~~~~~L~~L~l~~c~~~l~~~~~~~ 126 (357)
..+.|+. ++++.|.. -...++.+..++|+|++|+|++|. +..+. + ..+++|+.|++++|.. .
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~------- 209 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNEL-K------- 209 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCC-C-------
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCcc-C-------
Confidence 3444544 44555522 112233334578999999999986 33321 1 2468888888888761 0
Q ss_pred ceeeEEEEeecCCCceeeccccccccceeecccccCH------HHHHHHhccCCccceeec
Q 018344 127 VNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD------KWLYNQISELPFLEYLAL 181 (357)
Q Consensus 127 p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~------~~~~~l~~~~~~L~~L~l 181 (357)
. ......+.++ +|++|+|++|.+++ ......+..+|+|+.|+=
T Consensus 210 -~----------~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 210 -S----------ERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp -S----------GGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred -C----------chhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 0 0000122233 79999999998864 333467888999999973
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.00 E-value=0.00051 Score=59.56 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=51.4
Q ss_pred cCCCccEEEeeccccCC----CCCccCCCCCceEEeeccccCH-HHHHHHHcCCCCccEEeeecCCCCCccC--------
Q 018344 34 YLKSIYVLDFEFCKLEP----PRSTVTLFSLRKLCLSFVHVDD-EVIRDMVAGCPLIEYININNCPGLKSLQ-------- 100 (357)
Q Consensus 34 ~~~~L~~L~Ls~~~~~~----p~~~~~l~~L~~L~L~~~~~~~-~~l~~l~~~~~~L~~L~L~~c~~l~~l~-------- 100 (357)
++++|+.|+|++|.+.. |..+..+++|++|+|++|.++. ..+.. +..+ +|++|+|.+|+.-....
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCccccCcchhHHHH
Confidence 47789999999988765 2344578999999999998843 23332 2233 89999999887433221
Q ss_pred -cCCCCCccEEE
Q 018344 101 -LLGLNKLKEIK 111 (357)
Q Consensus 101 -l~~~~~L~~L~ 111 (357)
+..+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 23457888775
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.48 E-value=0.052 Score=49.65 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC-CCCCccCcCCCCCccEEEec
Q 018344 52 RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLKEIKLD 113 (357)
Q Consensus 52 ~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c-~~l~~l~l~~~~~L~~L~l~ 113 (357)
..|.++.+|+.+.+........ .....+|++|+.+.+... ..+..-...+|.+|+++++.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~--~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIG--TGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEEC--TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ceeeecccccEEecccccceec--CcccccccccccccCCCcccccCceeecCCCCcCEEEeC
Confidence 3566677777777755422100 122446777777777431 11222233455666666664
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.77 E-value=0.082 Score=40.13 Aligned_cols=52 Identities=21% Similarity=0.096 Sum_probs=39.3
Q ss_pred EEEecCCcce--ecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeecccc
Q 018344 17 KLDVGCCRIY--NLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV 70 (357)
Q Consensus 17 ~l~~~~~~~~--~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~ 70 (357)
.++.++.... .+|..+. .+|++|+|++|.+.. +..+..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4566666666 7886543 469999999998766 34677889999999998876
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.12 E-value=0.061 Score=44.04 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=17.2
Q ss_pred ccccceeecccccCHHHHH---HHhccCCccceeecc
Q 018344 149 KNLTHLRLDGLSITDKWLY---NQISELPFLEYLALH 182 (357)
Q Consensus 149 ~~L~~L~L~~~~i~~~~~~---~l~~~~~~L~~L~l~ 182 (357)
+.|++|+|++|.|.++... ..+..-..|+.|+|+
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECC
Confidence 3466666666666553322 233334456666664
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.94 E-value=0.048 Score=49.87 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=48.8
Q ss_pred eecCcccc-cCCCccEEEeeccc-cCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC-CCCccCcC
Q 018344 26 YNLPQIVF-YLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP-GLKSLQLL 102 (357)
Q Consensus 26 ~~lP~~i~-~~~~L~~L~Ls~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~-~l~~l~l~ 102 (357)
..++...+ +|.+|+.+++..+- ......+.++..|+.+.+..+.... ......+..|+.+.+.... .+..-...
T Consensus 174 ~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i---~~~~~~~~~l~~i~ip~~~~~i~~~~f~ 250 (394)
T 4fs7_A 174 ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYL---GDFALSKTGVKNIIIPDSFTELGKSVFY 250 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEE---CTTTTTTCCCCEEEECTTCCEECSSTTT
T ss_pred ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEe---ehhhcccCCCceEEECCCceeccccccc
Confidence 44555444 58899999887642 2224467788888888877653211 1112345678887775421 12222233
Q ss_pred CCCCccEEEecc
Q 018344 103 GLNKLKEIKLDS 114 (357)
Q Consensus 103 ~~~~L~~L~l~~ 114 (357)
++..++.+.+..
T Consensus 251 ~~~~l~~~~~~~ 262 (394)
T 4fs7_A 251 GCTDLESISIQN 262 (394)
T ss_dssp TCSSCCEEEECC
T ss_pred ccccceeEEcCC
Confidence 456666666653
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.62 E-value=0.16 Score=46.27 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=74.0
Q ss_pred cccccCCCccEEEeeccc-cCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCcc
Q 018344 30 QIVFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLK 108 (357)
Q Consensus 30 ~~i~~~~~L~~L~Ls~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~ 108 (357)
...+.+.+|+.+.+.... ......+.++..|+.+.+..+..... ......|+.++........ +......++.+|+
T Consensus 224 ~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~--~~~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIG--GSLFYNCSGLKKVIYGSVI-VPEKTFYGCSSLT 300 (394)
T ss_dssp TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEEC--SCTTTTCTTCCEEEECSSE-ECTTTTTTCTTCC
T ss_pred hhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceee--ccccccccccceeccCcee-ecccccccccccc
Confidence 334456677777775532 11123566677777777765422100 1123455666665554321 2222233445666
Q ss_pred EEEecccCCCccee-EeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCccceeecc
Q 018344 109 EIKLDSNRCGLERV-YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALH 182 (357)
Q Consensus 109 ~L~l~~c~~~l~~~-~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~ 182 (357)
.+.+...--.+.+- ...+.+|+++.+...... ..-.|.+|.+|+.+.+..+ ++ ..-...+.+|++|+.+++.
T Consensus 301 ~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 301 EVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEE
T ss_pred ccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEEC
Confidence 66554321001110 112456666655432111 0135778888999888654 21 1112347889999999884
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.98 E-value=0.1 Score=42.69 Aligned_cols=82 Identities=12% Similarity=0.166 Sum_probs=52.8
Q ss_pred cCCCccEEEeecc-ccCCC------CCccCCCCCceEEeeccccCHHHH---HHHHcCCCCccEEeeecCCCCCcc----
Q 018344 34 YLKSIYVLDFEFC-KLEPP------RSTVTLFSLRKLCLSFVHVDDEVI---RDMVAGCPLIEYININNCPGLKSL---- 99 (357)
Q Consensus 34 ~~~~L~~L~Ls~~-~~~~p------~~~~~l~~L~~L~L~~~~~~~~~l---~~l~~~~~~L~~L~L~~c~~l~~l---- 99 (357)
+-++|++|+|+++ .+... ..+..=+.|++|+|++|.+.+... ...+..-..|++|+|++|.. ..-
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I-g~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL-TPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC-CHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC-CHHHHHH
Confidence 3567999999875 44321 123345789999999998866543 34445667899999988763 110
Q ss_pred ---CcCCCCCccEEEecccC
Q 018344 100 ---QLLGLNKLKEIKLDSNR 116 (357)
Q Consensus 100 ---~l~~~~~L~~L~l~~c~ 116 (357)
.+..-..|++|++++|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhhCCceeEEECCCCc
Confidence 01111569999998654
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.37 E-value=0.55 Score=42.70 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=71.0
Q ss_pred ccCCCccEEEeecccc-CCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC-CCCCccCcCCCCCccEE
Q 018344 33 FYLKSIYVLDFEFCKL-EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLKEI 110 (357)
Q Consensus 33 ~~~~~L~~L~Ls~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c-~~l~~l~l~~~~~L~~L 110 (357)
..|.+|+.+.+..... .+...+.++++|+.+.+...-.... ...+.+|.+|+.+.+... ..+..-...+|.+|+++
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~--~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELP--ESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEEC--TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred eecccccEEecccccceecCcccccccccccccCCCcccccC--ceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEE
Confidence 4588999999876422 2245778899999999875411100 223567899999999653 11223345577889999
Q ss_pred EecccCCCcce-eEeecceeeEEEEeecCCCceeeccccccccceeecccc
Q 018344 111 KLDSNRCGLER-VYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLS 160 (357)
Q Consensus 111 ~l~~c~~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~ 160 (357)
.+-..--.+.+ ....+++|+.+.+.+..... ..+..+.+|+.+.+..+.
T Consensus 340 ~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 340 AIPSSVTKIPESAFSNCTALNNIEYSGSRSQW-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EECTTCCBCCGGGGTTCTTCCEEEESSCHHHH-HTCBCCCCC---------
T ss_pred EECcccCEEhHhHhhCCCCCCEEEECCceeeh-hhhhccCCCCEEEeCCCC
Confidence 88543212222 22357889998887743211 234567778888776543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.53 E-value=0.93 Score=40.77 Aligned_cols=77 Identities=13% Similarity=0.004 Sum_probs=39.2
Q ss_pred ccCCCccEEEeeccc-cCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc---CcCCCCCcc
Q 018344 33 FYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLK 108 (357)
Q Consensus 33 ~~~~~L~~L~Ls~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l---~l~~~~~L~ 108 (357)
..+.++....+.... ......+..+.+|+.+.+...-.... .....+|..|+.+.+... ++.+ ...++.+|+
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~--~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLG--DGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEEC--TTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCC
T ss_pred cccccccccccccceeEEeecccccccccceeeeccceeEEc--cccccCCccceEEEcCCC--ccEeCccccceeehhc
Confidence 345556665554422 12233556677777777765421000 112446777888777543 3322 233445666
Q ss_pred EEEec
Q 018344 109 EIKLD 113 (357)
Q Consensus 109 ~L~l~ 113 (357)
.+.+.
T Consensus 267 ~i~l~ 271 (379)
T 4h09_A 267 TLNFY 271 (379)
T ss_dssp EEEEC
T ss_pred ccccc
Confidence 66553
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.80 E-value=1.6 Score=39.26 Aligned_cols=122 Identities=12% Similarity=0.150 Sum_probs=70.5
Q ss_pred cccCCCccEEEeeccc-cCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc---CcCCCCCc
Q 018344 32 VFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKL 107 (357)
Q Consensus 32 i~~~~~L~~L~Ls~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l---~l~~~~~L 107 (357)
...+.+|+.+.+.... ......+.++..|+.+.+..+--... .....+|.+|+.+.+... ++.+ ...+|.+|
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~--~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIG--SFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEEC--TTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCCccEeC--ccccceeehhcccccccc--ceecccccccccccc
Confidence 3457788888886532 22234677889999999876521100 123457888999888542 3332 34456778
Q ss_pred cEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeeccc--ccCHHHHHHHhccCCccceeec
Q 018344 108 KEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGL--SITDKWLYNQISELPFLEYLAL 181 (357)
Q Consensus 108 ~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~L~~L~l 181 (357)
+.+.+..+. +..+. .-.|.+|.+|+.+.+..+ .+.+. .+.+|++|+.+.+
T Consensus 289 ~~i~l~~~~--i~~I~------------------~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~i 340 (379)
T 4h09_A 289 TKVVMDNSA--IETLE------------------PRVFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTISY 340 (379)
T ss_dssp CEEEECCTT--CCEEC------------------TTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCC
T ss_pred ccccccccc--cceeh------------------hhhhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEE
Confidence 877775442 11110 124556666777776432 23222 3566777777766
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=62.84 E-value=5.5 Score=29.73 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=28.4
Q ss_pred CCeEEEEEecCCcceecCccccc-CCCccEEEeeccccC
Q 018344 12 NVKELKLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLE 49 (357)
Q Consensus 12 ~v~~l~l~~~~~~~~~lP~~i~~-~~~L~~L~Ls~~~~~ 49 (357)
.+++ |+++++.+..+|..++. +.+|+.|+|++|.+.
T Consensus 32 ~l~~--L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTE--LVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSE--EECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCE--EECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4454 46788889999988765 889999999998654
No 165
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=32.45 E-value=27 Score=18.01 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.1
Q ss_pred HHHHHHHhhhCCCCCeeE
Q 018344 314 ANLVDCLLWITPHAETLS 331 (357)
Q Consensus 314 ~~~l~~Ll~~~p~le~L~ 331 (357)
.++++..+++.|.+|.|.
T Consensus 9 sdimdfvlkntpsmqal~ 26 (31)
T 2agh_C 9 SDIMDFVLKNTPSMQALG 26 (31)
T ss_dssp HHHHHHHHHHSCCCCCCC
T ss_pred HHHHHHHHhCChhHHHHh
Confidence 568899999999998764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.02 E-value=77 Score=22.12 Aligned_cols=34 Identities=18% Similarity=-0.103 Sum_probs=17.4
Q ss_pred cCCCccEEEeecc-ccCCCCCccCCCCCceEEeec
Q 018344 34 YLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSF 67 (357)
Q Consensus 34 ~~~~L~~L~Ls~~-~~~~p~~~~~l~~L~~L~L~~ 67 (357)
+|.+|+.+.+-.. ...+...|.+|.+|+.+.+..
T Consensus 18 ~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 3666666666542 222233555555665555554
Done!