Query 018346
Match_columns 357
No_of_seqs 481 out of 4759
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2230 Cfa Cyclopropane fatty 100.0 6.1E-46 1.3E-50 328.3 27.2 264 73-354 16-283 (283)
2 PF02353 CMAS: Mycolic acid cy 100.0 1.3E-45 2.7E-50 332.1 22.8 261 75-347 8-273 (273)
3 PRK11705 cyclopropane fatty ac 100.0 9.9E-38 2.1E-42 294.4 31.0 258 75-355 114-373 (383)
4 PLN02244 tocopherol O-methyltr 99.9 6.1E-22 1.3E-26 185.1 27.8 162 74-238 58-228 (340)
5 PRK01544 bifunctional N5-gluta 99.9 2.5E-22 5.5E-27 196.2 17.9 207 17-234 14-270 (506)
6 TIGR03533 L3_gln_methyl protei 99.9 5.9E-22 1.3E-26 180.4 16.9 193 26-235 29-253 (284)
7 PRK11805 N5-glutamine S-adenos 99.9 5.7E-22 1.2E-26 182.1 16.9 192 26-234 41-264 (307)
8 smart00828 PKS_MT Methyltransf 99.9 1.2E-21 2.6E-26 173.2 18.1 201 131-356 1-204 (224)
9 PRK14966 unknown domain/N5-glu 99.9 4.3E-22 9.3E-27 186.2 15.1 188 26-234 163-382 (423)
10 TIGR00536 hemK_fam HemK family 99.9 2.6E-21 5.7E-26 176.7 18.9 202 17-235 12-246 (284)
11 COG2890 HemK Methylase of poly 99.9 1.7E-21 3.8E-26 176.3 15.9 171 44-234 43-239 (280)
12 COG4106 Tam Trans-aconitate me 99.9 1.9E-22 4.2E-27 168.5 6.7 210 119-333 20-254 (257)
13 PLN02336 phosphoethanolamine N 99.9 2.9E-20 6.3E-25 182.2 21.8 216 119-355 256-475 (475)
14 COG2226 UbiE Methylase involve 99.9 1.1E-20 2.5E-25 164.9 15.0 120 120-239 42-162 (238)
15 PTZ00098 phosphoethanolamine N 99.8 7.4E-19 1.6E-23 158.6 21.5 235 83-349 19-259 (263)
16 PF01209 Ubie_methyltran: ubiE 99.8 2.4E-20 5.1E-25 164.6 11.4 119 121-239 39-159 (233)
17 PRK09328 N5-glutamine S-adenos 99.8 2.9E-19 6.2E-24 162.9 16.1 190 26-233 18-238 (275)
18 TIGR03704 PrmC_rel_meth putati 99.8 2.6E-19 5.7E-24 160.2 15.1 181 19-234 5-217 (251)
19 PF12847 Methyltransf_18: Meth 99.8 4.7E-19 1E-23 139.1 12.4 105 129-233 1-111 (112)
20 COG2227 UbiG 2-polyprenyl-3-me 99.8 9.8E-20 2.1E-24 156.3 8.4 109 129-240 59-168 (243)
21 PF13847 Methyltransf_31: Meth 99.8 9E-19 1.9E-23 145.3 13.1 108 128-235 2-112 (152)
22 smart00138 MeTrc Methyltransfe 99.8 3E-18 6.5E-23 154.5 17.5 189 23-234 16-243 (264)
23 KOG2904 Predicted methyltransf 99.8 3.1E-18 6.7E-23 148.1 14.0 177 47-238 80-290 (328)
24 PF05175 MTS: Methyltransferas 99.8 1.1E-17 2.4E-22 141.2 16.5 130 99-234 7-141 (170)
25 TIGR03534 RF_mod_PrmC protein- 99.8 7.2E-18 1.6E-22 151.6 16.3 169 46-233 22-217 (251)
26 PLN02233 ubiquinone biosynthes 99.8 7.9E-18 1.7E-22 151.8 15.9 117 122-238 66-187 (261)
27 PRK14103 trans-aconitate 2-met 99.8 3.2E-18 6.9E-23 154.2 13.2 113 117-236 17-129 (255)
28 TIGR02752 MenG_heptapren 2-hep 99.8 2E-17 4.3E-22 146.9 16.1 118 120-237 36-155 (231)
29 PRK11207 tellurite resistance 99.8 1.5E-17 3.3E-22 143.8 14.1 110 121-232 22-133 (197)
30 PF08241 Methyltransf_11: Meth 99.8 7.5E-18 1.6E-22 127.7 10.1 94 134-231 1-95 (95)
31 PRK01683 trans-aconitate 2-met 99.7 2.8E-17 6E-22 148.5 14.1 115 117-236 19-133 (258)
32 PLN02396 hexaprenyldihydroxybe 99.7 2.6E-17 5.7E-22 151.5 14.1 108 128-237 130-239 (322)
33 TIGR00477 tehB tellurite resis 99.7 1.2E-16 2.7E-21 137.9 17.4 108 123-233 24-133 (195)
34 PRK00107 gidB 16S rRNA methylt 99.7 7.8E-17 1.7E-21 137.3 15.6 105 127-235 43-147 (187)
35 TIGR00138 gidB 16S rRNA methyl 99.7 1.4E-16 2.9E-21 135.6 15.8 101 129-233 42-142 (181)
36 PRK11036 putative S-adenosyl-L 99.7 6.5E-17 1.4E-21 145.7 14.2 117 118-237 34-153 (255)
37 PF03848 TehB: Tellurite resis 99.7 3.6E-16 7.9E-21 132.4 17.0 112 121-235 22-135 (192)
38 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.7E-16 3.7E-21 142.2 15.2 106 128-234 55-165 (247)
39 TIGR02469 CbiT precorrin-6Y C5 99.7 5.9E-16 1.3E-20 123.4 15.6 114 118-234 8-123 (124)
40 PRK10258 biotin biosynthesis p 99.7 1.6E-16 3.6E-21 142.8 13.2 118 114-238 27-145 (251)
41 KOG1270 Methyltransferases [Co 99.7 3.3E-17 7.1E-22 141.6 7.9 107 130-240 90-202 (282)
42 PRK15001 SAM-dependent 23S rib 99.7 4.2E-16 9.2E-21 146.0 15.9 128 100-233 205-340 (378)
43 KOG1540 Ubiquinone biosynthesi 99.7 3.9E-16 8.4E-21 134.1 13.7 118 121-238 92-219 (296)
44 TIGR00452 methyltransferase, p 99.7 2.3E-15 4.9E-20 138.1 18.5 119 117-236 109-228 (314)
45 PRK12335 tellurite resistance 99.7 1.8E-15 3.9E-20 138.6 17.7 103 129-234 120-224 (287)
46 PF08242 Methyltransf_12: Meth 99.7 1.3E-17 2.9E-22 127.9 2.4 96 134-229 1-99 (99)
47 PRK11873 arsM arsenite S-adeno 99.7 8E-16 1.7E-20 140.0 14.2 110 126-235 74-185 (272)
48 PRK15068 tRNA mo(5)U34 methylt 99.7 1E-15 2.2E-20 141.8 14.5 116 119-235 112-228 (322)
49 PF13649 Methyltransf_25: Meth 99.7 2.7E-16 5.9E-21 121.0 9.0 94 133-227 1-101 (101)
50 PLN02490 MPBQ/MSBQ methyltrans 99.7 6.5E-16 1.4E-20 142.7 12.7 112 121-235 104-217 (340)
51 COG2813 RsmC 16S RNA G1207 met 99.7 2.2E-15 4.8E-20 134.3 15.3 131 97-234 132-267 (300)
52 PRK08287 cobalt-precorrin-6Y C 99.7 3E-15 6.4E-20 128.5 15.5 112 120-235 22-133 (187)
53 PRK09489 rsmC 16S ribosomal RN 99.7 3.2E-15 6.9E-20 139.2 16.3 105 128-234 195-304 (342)
54 TIGR02072 BioC biotin biosynth 99.7 1.6E-15 3.6E-20 135.0 13.4 106 129-238 34-140 (240)
55 TIGR00740 methyltransferase, p 99.7 1.9E-15 4E-20 134.9 13.7 108 128-236 52-164 (239)
56 PRK08317 hypothetical protein; 99.6 3.2E-15 6.9E-20 133.1 14.9 116 119-235 9-126 (241)
57 PRK06922 hypothetical protein; 99.6 1.1E-14 2.3E-19 142.7 19.3 107 128-235 417-539 (677)
58 TIGR00080 pimt protein-L-isoas 99.6 2.5E-15 5.5E-20 131.8 13.4 113 117-235 65-179 (215)
59 PRK00121 trmB tRNA (guanine-N( 99.6 2E-15 4.3E-20 131.0 11.9 108 129-236 40-159 (202)
60 TIGR00537 hemK_rel_arch HemK-r 99.6 3.7E-15 8E-20 127.0 13.4 106 128-237 18-144 (179)
61 PRK13944 protein-L-isoaspartat 99.6 4.5E-15 9.8E-20 129.1 13.6 112 117-234 60-174 (205)
62 PF13489 Methyltransf_23: Meth 99.6 2E-15 4.4E-20 126.0 10.5 99 127-237 20-119 (161)
63 COG4123 Predicted O-methyltran 99.6 2.7E-15 5.9E-20 131.2 11.1 116 123-238 38-175 (248)
64 COG2242 CobL Precorrin-6B meth 99.6 2.4E-14 5.2E-19 119.0 15.2 115 120-238 25-140 (187)
65 PF13659 Methyltransf_26: Meth 99.6 3.4E-15 7.4E-20 118.0 9.7 104 130-234 1-116 (117)
66 TIGR00091 tRNA (guanine-N(7)-) 99.6 3.9E-15 8.4E-20 128.5 10.8 108 129-236 16-135 (194)
67 TIGR03587 Pse_Me-ase pseudamin 99.6 1.5E-14 3.3E-19 125.4 14.5 118 107-234 23-143 (204)
68 PRK05785 hypothetical protein; 99.6 2.1E-14 4.6E-19 126.6 15.4 89 129-226 51-140 (226)
69 PRK13942 protein-L-isoaspartat 99.6 1.8E-14 3.8E-19 126.0 14.5 113 116-234 63-177 (212)
70 PRK00216 ubiE ubiquinone/menaq 99.6 2.4E-14 5.2E-19 127.5 15.3 116 121-236 43-161 (239)
71 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.8E-14 3.9E-19 125.5 14.0 113 122-236 27-155 (213)
72 PF05401 NodS: Nodulation prot 99.6 7.3E-15 1.6E-19 123.0 10.9 106 125-234 39-147 (201)
73 PRK14967 putative methyltransf 99.6 2.1E-14 4.5E-19 126.8 14.1 116 118-235 25-161 (223)
74 TIGR02716 C20_methyl_CrtF C-20 99.6 3.3E-14 7.1E-19 131.6 15.6 116 119-236 139-257 (306)
75 PLN03075 nicotianamine synthas 99.6 2.7E-14 5.8E-19 128.7 13.6 105 128-233 122-233 (296)
76 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 6.5E-14 1.4E-18 123.4 15.0 115 120-236 30-146 (223)
77 PRK00377 cbiT cobalt-precorrin 99.6 7.9E-14 1.7E-18 120.7 15.2 111 121-234 32-146 (198)
78 PRK07402 precorrin-6B methylas 99.6 7.9E-14 1.7E-18 120.6 15.1 113 120-236 31-145 (196)
79 KOG4300 Predicted methyltransf 99.6 3.1E-14 6.6E-19 118.7 11.1 105 129-234 76-183 (252)
80 PRK05134 bifunctional 3-demeth 99.6 1.2E-13 2.5E-18 122.9 15.8 114 119-235 38-153 (233)
81 TIGR01177 conserved hypothetic 99.6 7.7E-14 1.7E-18 130.2 15.1 116 120-237 173-298 (329)
82 PRK00312 pcm protein-L-isoaspa 99.5 9.8E-14 2.1E-18 121.5 13.3 110 117-234 66-176 (212)
83 PRK14121 tRNA (guanine-N(7)-)- 99.5 9E-14 2E-18 129.8 13.5 115 122-236 115-238 (390)
84 PF07021 MetW: Methionine bios 99.5 2.2E-14 4.9E-19 119.9 8.3 152 127-310 11-166 (193)
85 PRK14968 putative methyltransf 99.5 1.6E-13 3.4E-18 117.8 13.7 106 128-235 22-150 (188)
86 TIGR02021 BchM-ChlM magnesium 99.5 2E-13 4.3E-18 120.2 14.4 112 116-231 40-156 (219)
87 PRK04266 fibrillarin; Provisio 99.5 3.7E-13 7.9E-18 118.3 15.4 109 123-235 66-178 (226)
88 PLN02672 methionine S-methyltr 99.5 4.1E-14 8.8E-19 146.8 10.7 143 78-237 82-282 (1082)
89 PRK13255 thiopurine S-methyltr 99.5 1.7E-13 3.7E-18 119.8 13.1 109 125-235 33-157 (218)
90 PRK07580 Mg-protoporphyrin IX 99.5 7.4E-13 1.6E-17 117.4 17.4 98 127-228 61-161 (230)
91 COG2518 Pcm Protein-L-isoaspar 99.5 4E-13 8.6E-18 114.2 13.5 110 117-234 60-170 (209)
92 PRK11088 rrmA 23S rRNA methylt 99.5 2.1E-13 4.5E-18 124.0 12.3 98 128-237 84-185 (272)
93 COG1352 CheR Methylase of chem 99.5 8.6E-13 1.9E-17 117.7 15.8 186 22-233 15-241 (268)
94 TIGR00406 prmA ribosomal prote 99.5 7.1E-13 1.5E-17 121.3 15.5 103 128-235 158-261 (288)
95 TIGR01983 UbiG ubiquinone bios 99.5 4.6E-13 1E-17 118.2 13.7 105 129-235 45-151 (224)
96 COG2264 PrmA Ribosomal protein 99.5 5E-13 1.1E-17 120.1 13.2 102 129-234 162-264 (300)
97 PRK06202 hypothetical protein; 99.5 5.3E-13 1.1E-17 118.6 13.1 105 128-237 59-170 (232)
98 PF08003 Methyltransf_9: Prote 99.5 6.8E-13 1.5E-17 118.3 13.6 120 119-239 105-225 (315)
99 PF01135 PCMT: Protein-L-isoas 99.5 4.5E-13 9.7E-18 116.0 12.1 114 116-235 59-174 (209)
100 PLN02336 phosphoethanolamine N 99.5 2.9E-13 6.4E-18 132.8 12.4 112 120-235 28-144 (475)
101 PRK10611 chemotaxis methyltran 99.5 9.9E-13 2.1E-17 118.9 14.7 182 22-233 38-262 (287)
102 COG2519 GCD14 tRNA(1-methylade 99.5 9.2E-13 2E-17 114.4 13.6 115 119-238 84-200 (256)
103 PRK00517 prmA ribosomal protei 99.5 8.4E-13 1.8E-17 118.5 13.5 96 128-234 118-214 (250)
104 KOG1271 Methyltransferases [Ge 99.5 4.1E-13 8.9E-18 109.8 10.1 123 114-236 48-184 (227)
105 PLN02585 magnesium protoporphy 99.5 1.6E-12 3.5E-17 119.5 15.3 97 129-230 144-247 (315)
106 PRK11188 rrmJ 23S rRNA methylt 99.5 7.6E-13 1.6E-17 115.3 12.4 107 120-237 41-169 (209)
107 PRK10901 16S rRNA methyltransf 99.5 1.3E-12 2.7E-17 126.2 15.0 115 121-236 236-375 (427)
108 TIGR03438 probable methyltrans 99.5 4.6E-12 9.9E-17 116.7 18.0 151 78-237 20-181 (301)
109 PRK13943 protein-L-isoaspartat 99.5 1.3E-12 2.8E-17 120.4 14.1 112 117-234 68-181 (322)
110 PHA03411 putative methyltransf 99.4 1.8E-12 3.9E-17 115.2 14.1 102 129-235 64-185 (279)
111 PF06325 PrmA: Ribosomal prote 99.4 7.4E-13 1.6E-17 120.2 11.8 100 128-234 160-260 (295)
112 PRK14902 16S rRNA methyltransf 99.4 1.6E-12 3.5E-17 126.1 14.3 114 122-235 243-381 (444)
113 TIGR00446 nop2p NOL1/NOP2/sun 99.4 2E-12 4.3E-17 116.9 13.8 112 125-236 67-202 (264)
114 PRK14903 16S rRNA methyltransf 99.4 1.5E-12 3.3E-17 125.4 13.8 113 124-236 232-369 (431)
115 PRK10909 rsmD 16S rRNA m(2)G96 99.4 2.4E-12 5.3E-17 110.7 13.5 108 128-237 52-163 (199)
116 PRK14904 16S rRNA methyltransf 99.4 2.7E-12 5.7E-17 124.6 14.9 114 123-236 244-380 (445)
117 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.6E-12 3.5E-17 126.1 12.6 131 95-234 266-401 (443)
118 PRK14901 16S rRNA methyltransf 99.4 3.3E-12 7.2E-17 123.5 14.4 115 122-236 245-387 (434)
119 smart00650 rADc Ribosomal RNA 99.4 2.7E-12 5.9E-17 108.3 11.5 109 119-234 3-114 (169)
120 cd02440 AdoMet_MTases S-adenos 99.4 3.3E-12 7.2E-17 97.4 11.0 100 132-232 1-103 (107)
121 TIGR00563 rsmB ribosomal RNA s 99.4 4.6E-12 1E-16 122.3 14.4 116 121-236 230-371 (426)
122 PRK04457 spermidine synthase; 99.4 2.5E-12 5.5E-17 115.8 10.3 109 128-236 65-180 (262)
123 PRK13256 thiopurine S-methyltr 99.4 2.5E-11 5.5E-16 105.9 15.9 112 123-236 37-166 (226)
124 TIGR02085 meth_trns_rumB 23S r 99.4 4.8E-12 1E-16 119.9 12.3 132 95-234 202-335 (374)
125 PF00891 Methyltransf_2: O-met 99.4 1.4E-11 2.9E-16 110.2 14.6 110 119-237 90-203 (241)
126 PHA03412 putative methyltransf 99.4 4.4E-12 9.5E-17 110.2 10.7 95 129-228 49-158 (241)
127 PF01739 CheR: CheR methyltran 99.4 2.6E-12 5.6E-17 110.1 9.1 133 101-233 3-175 (196)
128 PLN02781 Probable caffeoyl-CoA 99.4 1.2E-11 2.7E-16 109.5 13.7 113 115-233 57-178 (234)
129 PF08704 GCD14: tRNA methyltra 99.3 9E-12 1.9E-16 110.1 11.7 116 118-238 29-151 (247)
130 PRK03522 rumB 23S rRNA methylu 99.3 1.1E-11 2.3E-16 115.1 12.7 114 117-235 161-276 (315)
131 TIGR00438 rrmJ cell division p 99.3 1.4E-11 3.1E-16 105.7 12.7 100 126-236 29-149 (188)
132 PRK15128 23S rRNA m(5)C1962 me 99.3 8.2E-12 1.8E-16 118.5 11.9 106 129-235 220-341 (396)
133 PF05724 TPMT: Thiopurine S-me 99.3 2.1E-11 4.5E-16 106.5 13.4 114 120-235 28-157 (218)
134 PTZ00146 fibrillarin; Provisio 99.3 1.7E-11 3.8E-16 110.1 13.0 107 123-233 126-237 (293)
135 TIGR02081 metW methionine bios 99.3 9.7E-12 2.1E-16 107.3 10.9 96 128-234 12-110 (194)
136 KOG1541 Predicted protein carb 99.3 8.3E-12 1.8E-16 105.3 9.6 122 108-236 27-163 (270)
137 PRK11783 rlmL 23S rRNA m(2)G24 99.3 8.8E-12 1.9E-16 127.1 11.4 105 129-234 538-657 (702)
138 COG4976 Predicted methyltransf 99.3 1.6E-12 3.5E-17 110.1 4.1 137 79-236 89-228 (287)
139 PF02390 Methyltransf_4: Putat 99.3 2.5E-11 5.5E-16 104.4 11.3 106 130-235 18-135 (195)
140 PF01596 Methyltransf_3: O-met 99.3 3.5E-11 7.6E-16 103.9 12.2 119 109-233 28-155 (205)
141 PRK00811 spermidine synthase; 99.3 2.1E-11 4.6E-16 111.2 11.2 107 128-234 75-192 (283)
142 KOG3191 Predicted N6-DNA-methy 99.3 1.5E-10 3.2E-15 95.0 13.3 107 129-236 43-171 (209)
143 TIGR00479 rumA 23S rRNA (uraci 99.3 6.7E-11 1.5E-15 114.6 13.3 114 115-233 278-396 (431)
144 COG4122 Predicted O-methyltran 99.2 7.6E-11 1.6E-15 101.8 11.0 114 115-234 48-167 (219)
145 COG2263 Predicted RNA methylas 99.2 9.8E-11 2.1E-15 97.1 11.1 80 126-209 42-121 (198)
146 PLN02476 O-methyltransferase 99.2 1.7E-10 3.8E-15 103.5 13.4 113 114-232 106-227 (278)
147 PF01170 UPF0020: Putative RNA 99.2 2.5E-10 5.3E-15 97.0 13.0 109 117-225 16-143 (179)
148 PLN02232 ubiquinone biosynthes 99.2 5.7E-11 1.2E-15 99.2 8.6 82 157-238 1-86 (160)
149 KOG2361 Predicted methyltransf 99.2 5.3E-11 1.1E-15 102.0 8.3 108 131-239 73-189 (264)
150 TIGR00417 speE spermidine synt 99.2 1.4E-10 3.1E-15 105.2 11.4 107 128-234 71-187 (270)
151 TIGR00095 RNA methyltransferas 99.2 6.1E-10 1.3E-14 95.4 14.0 106 129-236 49-162 (189)
152 PF03291 Pox_MCEL: mRNA cappin 99.2 1.1E-10 2.5E-15 108.0 9.9 109 129-238 62-191 (331)
153 KOG3010 Methyltransferase [Gen 99.2 5.6E-11 1.2E-15 101.9 7.2 97 132-231 36-135 (261)
154 PLN02366 spermidine synthase 99.2 3.4E-10 7.3E-15 103.9 12.4 107 128-234 90-207 (308)
155 PF10294 Methyltransf_16: Puta 99.2 5.8E-10 1.3E-14 94.3 12.9 109 127-236 43-159 (173)
156 COG0220 Predicted S-adenosylme 99.2 4.2E-10 9.2E-15 98.4 11.9 106 130-235 49-166 (227)
157 COG1041 Predicted DNA modifica 99.1 4.8E-10 1E-14 102.2 12.1 114 119-234 187-311 (347)
158 PRK05031 tRNA (uracil-5-)-meth 99.1 4.1E-10 8.9E-15 106.3 12.1 113 115-235 193-322 (362)
159 PRK01581 speE spermidine synth 99.1 2.8E-10 6E-15 105.1 10.5 108 127-234 148-269 (374)
160 PRK11727 23S rRNA mA1618 methy 99.1 3.9E-10 8.4E-15 103.6 11.4 81 129-209 114-202 (321)
161 PF03602 Cons_hypoth95: Conser 99.1 3.6E-10 7.8E-15 96.1 9.8 109 129-238 42-158 (183)
162 TIGR02143 trmA_only tRNA (urac 99.1 6.5E-10 1.4E-14 104.5 12.4 111 116-234 185-312 (353)
163 PRK00050 16S rRNA m(4)C1402 me 99.1 7.6E-10 1.7E-14 100.4 12.2 86 117-204 7-98 (296)
164 PLN02589 caffeoyl-CoA O-methyl 99.1 1E-09 2.2E-14 97.4 12.7 113 114-232 67-189 (247)
165 PRK04338 N(2),N(2)-dimethylgua 99.1 5.9E-10 1.3E-14 105.4 11.8 99 130-232 58-157 (382)
166 PRK14896 ksgA 16S ribosomal RN 99.1 5.3E-10 1.1E-14 100.8 11.0 88 116-208 16-103 (258)
167 COG1092 Predicted SAM-dependen 99.1 3.5E-10 7.5E-15 106.2 9.9 107 129-237 217-340 (393)
168 PF06080 DUF938: Protein of un 99.1 1.1E-09 2.3E-14 93.3 12.0 104 132-235 28-143 (204)
169 PTZ00338 dimethyladenosine tra 99.1 6.1E-10 1.3E-14 101.7 11.0 91 116-209 23-114 (294)
170 COG2265 TrmA SAM-dependent met 99.1 1E-09 2.2E-14 105.0 12.6 115 115-234 279-397 (432)
171 PRK00274 ksgA 16S ribosomal RN 99.1 5.4E-10 1.2E-14 101.5 9.9 87 117-208 30-117 (272)
172 PRK03612 spermidine synthase; 99.1 4.8E-10 1E-14 110.7 9.9 106 128-234 296-416 (521)
173 PF02475 Met_10: Met-10+ like- 99.0 1.3E-09 2.8E-14 93.6 9.8 100 127-230 99-199 (200)
174 KOG2899 Predicted methyltransf 99.0 1.4E-09 3E-14 93.3 9.8 104 128-232 57-208 (288)
175 PF02527 GidB: rRNA small subu 99.0 3.8E-09 8.2E-14 89.6 12.2 97 132-232 51-147 (184)
176 PF05185 PRMT5: PRMT5 arginine 99.0 2.6E-09 5.6E-14 102.9 11.8 128 103-230 156-294 (448)
177 PF10672 Methyltrans_SAM: S-ad 99.0 1.6E-09 3.4E-14 97.9 9.4 106 129-235 123-240 (286)
178 TIGR00755 ksgA dimethyladenosi 99.0 6.3E-09 1.4E-13 93.6 12.6 86 117-207 17-105 (253)
179 PF05891 Methyltransf_PK: AdoM 99.0 1.1E-09 2.3E-14 93.7 7.1 107 129-236 55-164 (218)
180 COG0742 N6-adenine-specific me 99.0 7.9E-09 1.7E-13 86.7 12.1 109 128-237 42-158 (187)
181 KOG1975 mRNA cap methyltransfe 99.0 3.1E-09 6.6E-14 94.8 9.9 109 127-236 115-240 (389)
182 COG0357 GidB Predicted S-adeno 99.0 1.7E-08 3.8E-13 87.0 14.3 98 130-231 68-166 (215)
183 COG3963 Phospholipid N-methylt 99.0 4.4E-09 9.6E-14 85.2 9.5 142 81-236 9-159 (194)
184 PF12147 Methyltransf_20: Puta 99.0 2.7E-08 5.9E-13 88.2 15.0 105 128-232 134-248 (311)
185 PRK11933 yebU rRNA (cytosine-C 99.0 1.1E-08 2.5E-13 98.9 13.8 111 126-236 110-245 (470)
186 KOG1499 Protein arginine N-met 99.0 4.1E-09 8.8E-14 95.7 10.0 100 128-230 59-164 (346)
187 PF05219 DREV: DREV methyltran 99.0 9.9E-09 2.1E-13 89.9 11.9 96 129-235 94-190 (265)
188 KOG1500 Protein arginine N-met 98.9 6.8E-09 1.5E-13 92.9 10.6 105 127-233 175-282 (517)
189 KOG3420 Predicted RNA methylas 98.9 2.8E-09 6.1E-14 84.1 7.0 91 117-209 36-127 (185)
190 PRK04148 hypothetical protein; 98.9 1.6E-08 3.4E-13 80.5 10.9 104 121-238 8-114 (134)
191 PF05958 tRNA_U5-meth_tr: tRNA 98.9 1.8E-08 3.9E-13 94.7 12.0 125 98-233 169-310 (352)
192 TIGR00308 TRM1 tRNA(guanine-26 98.9 2E-08 4.3E-13 94.6 12.2 101 130-234 45-148 (374)
193 PRK01544 bifunctional N5-gluta 98.9 1.1E-08 2.3E-13 100.7 10.2 126 109-234 320-463 (506)
194 COG0116 Predicted N6-adenine-s 98.9 4.2E-08 9E-13 90.9 13.1 125 107-234 172-345 (381)
195 PF09445 Methyltransf_15: RNA 98.8 6.5E-09 1.4E-13 85.8 6.7 76 131-208 1-81 (163)
196 KOG2187 tRNA uracil-5-methyltr 98.8 8E-09 1.7E-13 97.8 7.9 148 81-235 338-492 (534)
197 PLN02823 spermine synthase 98.8 1.9E-08 4.2E-13 93.3 10.1 107 128-234 102-221 (336)
198 PRK11783 rlmL 23S rRNA m(2)G24 98.8 6E-08 1.3E-12 99.2 14.5 120 117-236 177-350 (702)
199 PF02384 N6_Mtase: N-6 DNA Met 98.8 3.7E-08 8E-13 91.4 11.1 120 117-236 34-186 (311)
200 COG0030 KsgA Dimethyladenosine 98.8 3.5E-08 7.5E-13 87.4 10.1 88 117-208 18-107 (259)
201 KOG2940 Predicted methyltransf 98.8 8.1E-09 1.8E-13 87.8 5.5 106 129-237 72-178 (325)
202 PF05148 Methyltransf_8: Hypot 98.8 1.9E-08 4E-13 85.3 7.7 99 120-237 62-162 (219)
203 COG2520 Predicted methyltransf 98.8 3.4E-08 7.4E-13 90.9 10.0 107 128-239 187-295 (341)
204 KOG1269 SAM-dependent methyltr 98.8 2.8E-08 6E-13 92.8 9.5 158 77-238 61-220 (364)
205 COG0421 SpeE Spermidine syntha 98.8 6.1E-08 1.3E-12 87.6 11.2 103 129-232 76-189 (282)
206 COG0144 Sun tRNA and rRNA cyto 98.7 2.7E-07 5.9E-12 86.7 14.8 114 123-236 150-291 (355)
207 TIGR00478 tly hemolysin TlyA f 98.7 7.4E-08 1.6E-12 84.5 10.1 101 116-232 61-170 (228)
208 KOG1661 Protein-L-isoaspartate 98.7 8E-08 1.7E-12 80.9 9.7 102 127-234 80-194 (237)
209 KOG0820 Ribosomal RNA adenine 98.7 8.3E-08 1.8E-12 83.9 9.5 89 117-208 46-135 (315)
210 KOG2915 tRNA(1-methyladenosine 98.7 2.6E-07 5.6E-12 80.9 12.2 114 119-237 95-214 (314)
211 TIGR00006 S-adenosyl-methyltra 98.7 3E-07 6.5E-12 83.7 13.0 87 117-204 8-100 (305)
212 COG2521 Predicted archaeal met 98.7 2E-08 4.3E-13 85.8 4.7 110 125-236 130-248 (287)
213 PF01564 Spermine_synth: Sperm 98.7 4.6E-08 1E-12 87.3 7.2 109 128-236 75-194 (246)
214 KOG1663 O-methyltransferase [S 98.7 4.1E-07 8.8E-12 78.1 12.1 111 117-233 64-183 (237)
215 COG3897 Predicted methyltransf 98.6 1.7E-07 3.7E-12 78.2 9.1 117 119-239 69-185 (218)
216 PF08123 DOT1: Histone methyla 98.6 3.2E-07 6.8E-12 79.3 11.2 114 117-231 30-156 (205)
217 PRK00536 speE spermidine synth 98.6 4E-07 8.6E-12 81.4 11.4 100 127-235 70-173 (262)
218 TIGR02987 met_A_Alw26 type II 98.6 3.4E-07 7.4E-12 91.0 12.0 109 129-237 31-200 (524)
219 KOG3045 Predicted RNA methylas 98.6 1.3E-07 2.8E-12 82.1 7.6 97 120-237 170-268 (325)
220 PF04672 Methyltransf_19: S-ad 98.6 1.1E-07 2.5E-12 84.2 7.3 169 108-279 46-233 (267)
221 TIGR03439 methyl_EasF probable 98.6 4.1E-06 8.9E-11 77.2 16.9 149 78-235 33-199 (319)
222 PF01728 FtsJ: FtsJ-like methy 98.6 1.3E-07 2.7E-12 80.7 6.3 109 117-236 8-142 (181)
223 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.5 1.1E-06 2.4E-11 80.1 12.2 112 125-236 81-222 (283)
224 PF13679 Methyltransf_32: Meth 98.4 6.5E-06 1.4E-10 67.1 12.6 104 127-236 23-134 (141)
225 PF09243 Rsm22: Mitochondrial 98.4 4.2E-06 9E-11 76.0 12.6 122 115-238 19-144 (274)
226 PF05971 Methyltransf_10: Prot 98.4 2.3E-06 4.9E-11 77.6 10.1 80 130-209 103-190 (299)
227 KOG3178 Hydroxyindole-O-methyl 98.4 1.9E-06 4.2E-11 78.7 9.6 100 130-237 178-279 (342)
228 KOG2730 Methylase [General fun 98.4 1.7E-07 3.7E-12 79.4 2.6 101 129-231 94-200 (263)
229 PF00398 RrnaAD: Ribosomal RNA 98.4 4.3E-06 9.3E-11 75.6 11.8 99 116-221 17-119 (262)
230 PF03141 Methyltransf_29: Puta 98.3 3.6E-07 7.7E-12 87.0 4.1 100 131-237 119-223 (506)
231 COG0500 SmtA SAM-dependent met 98.3 1.1E-05 2.4E-10 66.0 12.4 105 133-239 52-161 (257)
232 COG4076 Predicted RNA methylas 98.3 2E-06 4.3E-11 71.3 7.5 98 131-231 34-133 (252)
233 PF01795 Methyltransf_5: MraW 98.3 2.3E-06 5.1E-11 77.9 7.6 87 117-204 8-101 (310)
234 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 1.4E-06 3E-11 77.5 5.7 106 129-235 56-201 (256)
235 COG0293 FtsJ 23S rRNA methylas 98.3 1.3E-05 2.8E-10 68.5 11.3 111 117-238 32-164 (205)
236 PF01269 Fibrillarin: Fibrilla 98.3 1.8E-05 4E-10 68.0 12.1 108 123-234 67-179 (229)
237 TIGR01444 fkbM_fam methyltrans 98.2 4.6E-06 1E-10 68.0 7.9 60 132-191 1-60 (143)
238 COG0275 Predicted S-adenosylme 98.2 2.8E-05 6.1E-10 69.7 12.4 86 117-203 11-103 (314)
239 PF04816 DUF633: Family of unk 98.2 1.8E-05 3.9E-10 68.4 10.8 99 133-233 1-101 (205)
240 KOG1331 Predicted methyltransf 98.2 1.6E-06 3.4E-11 76.9 4.2 98 128-236 44-146 (293)
241 PF11968 DUF3321: Putative met 98.2 5.2E-06 1.1E-10 71.1 7.1 89 130-236 52-152 (219)
242 PRK10742 putative methyltransf 98.2 9.3E-06 2E-10 71.4 8.7 88 120-209 77-177 (250)
243 KOG3201 Uncharacterized conser 98.2 1.3E-06 2.8E-11 70.6 2.9 116 121-236 21-143 (201)
244 PF01861 DUF43: Protein of unk 98.1 0.00013 2.9E-09 63.6 15.3 110 120-233 36-149 (243)
245 PF03059 NAS: Nicotianamine sy 98.1 4.1E-05 8.9E-10 68.8 12.5 103 130-232 121-229 (276)
246 PF07942 N2227: N2227-like pro 98.1 4.7E-05 1E-09 68.2 12.6 100 129-230 56-199 (270)
247 PRK11760 putative 23S rRNA C24 98.1 2.3E-05 5E-10 71.9 10.6 86 128-226 210-296 (357)
248 KOG1122 tRNA and rRNA cytosine 98.1 2.8E-05 6.1E-10 72.4 11.0 113 125-237 237-375 (460)
249 PF13578 Methyltransf_24: Meth 98.1 2.5E-06 5.5E-11 65.8 3.0 98 134-233 1-105 (106)
250 COG1189 Predicted rRNA methyla 98.0 4.4E-05 9.6E-10 66.2 9.1 108 117-233 66-178 (245)
251 KOG1709 Guanidinoacetate methy 97.9 9.5E-05 2E-09 62.9 10.0 102 128-231 100-204 (271)
252 COG1889 NOP1 Fibrillarin-like 97.9 0.00017 3.7E-09 60.8 10.6 106 124-234 71-181 (231)
253 COG4262 Predicted spermidine s 97.9 0.00014 3E-09 66.6 10.6 108 128-236 288-410 (508)
254 KOG3115 Methyltransferase-like 97.9 6E-05 1.3E-09 63.5 7.4 106 129-234 60-184 (249)
255 KOG3987 Uncharacterized conser 97.8 1.7E-05 3.7E-10 66.9 4.1 96 129-234 112-208 (288)
256 PF11599 AviRa: RRNA methyltra 97.8 0.00029 6.2E-09 60.0 10.3 116 116-231 38-212 (246)
257 PF07091 FmrO: Ribosomal RNA m 97.7 0.00014 3E-09 63.9 8.2 91 117-210 95-185 (251)
258 COG0286 HsdM Type I restrictio 97.6 0.00059 1.3E-08 67.1 12.2 123 117-239 174-332 (489)
259 COG4798 Predicted methyltransf 97.6 0.00016 3.5E-09 60.5 6.7 114 121-234 40-167 (238)
260 COG2384 Predicted SAM-dependen 97.6 0.0011 2.4E-08 56.9 11.6 101 129-231 16-118 (226)
261 PF06962 rRNA_methylase: Putat 97.5 0.00074 1.6E-08 54.3 8.9 81 155-235 1-94 (140)
262 COG3129 Predicted SAM-dependen 97.5 0.00016 3.5E-09 62.1 5.4 80 129-209 78-166 (292)
263 KOG2793 Putative N2,N2-dimethy 97.4 0.0015 3.2E-08 57.8 10.3 107 129-237 86-203 (248)
264 KOG2352 Predicted spermine/spe 97.4 0.0021 4.6E-08 61.5 12.0 102 131-234 50-162 (482)
265 KOG2671 Putative RNA methylase 97.4 0.00034 7.5E-09 63.6 6.3 110 125-236 204-357 (421)
266 KOG4589 Cell division protein 97.3 0.0015 3.2E-08 54.6 8.7 100 128-238 68-189 (232)
267 PF04989 CmcI: Cephalosporin h 97.3 0.0014 3E-08 56.2 8.5 104 129-235 32-149 (206)
268 COG1867 TRM1 N2,N2-dimethylgua 97.3 0.0013 2.8E-08 60.8 8.8 103 130-236 53-157 (380)
269 PF02005 TRM: N2,N2-dimethylgu 97.3 0.0011 2.4E-08 62.8 8.4 103 129-235 49-156 (377)
270 COG4627 Uncharacterized protei 97.2 0.0003 6.5E-09 56.7 3.3 44 195-238 46-91 (185)
271 KOG2198 tRNA cytosine-5-methyl 97.2 0.0045 9.7E-08 57.3 11.1 113 125-237 151-300 (375)
272 COG5459 Predicted rRNA methyla 97.2 0.0018 4E-08 59.1 8.3 121 118-238 102-230 (484)
273 KOG4058 Uncharacterized conser 97.1 0.0039 8.5E-08 50.0 8.4 111 117-232 60-171 (199)
274 PF03492 Methyltransf_7: SAM d 97.1 0.13 2.8E-06 48.1 19.9 113 126-238 13-188 (334)
275 PF04445 SAM_MT: Putative SAM- 97.0 0.0033 7.1E-08 55.1 8.0 86 121-208 65-163 (234)
276 COG1064 AdhP Zn-dependent alco 97.0 0.0089 1.9E-07 55.4 11.0 99 123-235 160-261 (339)
277 KOG1596 Fibrillarin and relate 97.0 0.003 6.4E-08 54.8 7.2 108 123-235 150-263 (317)
278 KOG0822 Protein kinase inhibit 96.9 0.0049 1.1E-07 59.3 8.9 129 101-231 336-476 (649)
279 PRK09424 pntA NAD(P) transhydr 96.8 0.014 3E-07 57.4 11.2 100 127-234 162-286 (509)
280 KOG2798 Putative trehalase [Ca 96.7 0.014 3E-07 52.8 9.3 117 113-231 130-294 (369)
281 PHA01634 hypothetical protein 96.5 0.019 4.1E-07 44.9 8.1 69 129-202 28-98 (156)
282 KOG0024 Sorbitol dehydrogenase 96.5 0.017 3.8E-07 52.5 8.8 111 121-241 161-281 (354)
283 KOG1562 Spermidine synthase [A 96.3 0.014 3E-07 52.4 7.0 108 126-234 118-237 (337)
284 PLN02668 indole-3-acetate carb 96.2 0.089 1.9E-06 49.9 12.4 108 130-238 64-242 (386)
285 KOG1501 Arginine N-methyltrans 96.2 0.011 2.4E-07 55.6 6.2 60 131-191 68-128 (636)
286 PRK11524 putative methyltransf 96.0 0.025 5.4E-07 51.7 7.8 58 115-175 195-252 (284)
287 KOG2920 Predicted methyltransf 96.0 0.0044 9.5E-08 55.4 2.6 101 128-231 115-232 (282)
288 COG1568 Predicted methyltransf 96.0 0.063 1.4E-06 47.8 9.5 101 129-231 152-258 (354)
289 PF01555 N6_N4_Mtase: DNA meth 96.0 0.022 4.8E-07 49.8 6.8 54 115-171 178-231 (231)
290 cd08283 FDH_like_1 Glutathione 95.9 0.053 1.2E-06 51.8 9.5 108 123-233 178-306 (386)
291 cd00315 Cyt_C5_DNA_methylase C 95.8 0.02 4.3E-07 52.1 6.0 70 132-209 2-75 (275)
292 PF06859 Bin3: Bicoid-interact 95.8 0.0082 1.8E-07 45.9 2.9 38 196-233 1-44 (110)
293 PF03141 Methyltransf_29: Puta 95.8 0.0057 1.2E-07 58.9 2.5 98 130-234 366-468 (506)
294 KOG1227 Putative methyltransfe 95.8 0.006 1.3E-07 54.7 2.3 95 129-228 194-290 (351)
295 PF02636 Methyltransf_28: Puta 95.7 0.037 8.1E-07 49.6 7.4 77 130-210 19-109 (252)
296 PTZ00357 methyltransferase; Pr 95.7 0.083 1.8E-06 52.8 9.8 98 131-228 702-830 (1072)
297 PRK13699 putative methylase; P 95.6 0.053 1.2E-06 47.8 7.8 58 116-176 151-208 (227)
298 COG4301 Uncharacterized conser 95.6 0.55 1.2E-05 41.3 13.6 146 78-234 36-194 (321)
299 TIGR00561 pntA NAD(P) transhyd 95.6 0.057 1.2E-06 53.1 8.5 95 129-231 163-282 (511)
300 KOG1099 SAM-dependent methyltr 95.5 0.028 6.1E-07 48.6 5.4 98 130-238 42-168 (294)
301 KOG1253 tRNA methyltransferase 95.5 0.012 2.7E-07 56.3 3.3 105 128-236 108-219 (525)
302 COG3510 CmcI Cephalosporin hyd 95.3 0.13 2.9E-06 43.3 8.3 107 129-240 69-187 (237)
303 COG1063 Tdh Threonine dehydrog 95.2 0.3 6.6E-06 46.1 12.0 101 128-237 167-273 (350)
304 cd08254 hydroxyacyl_CoA_DH 6-h 95.2 0.32 6.9E-06 45.1 12.0 96 125-234 161-264 (338)
305 PRK09880 L-idonate 5-dehydroge 95.1 0.14 2.9E-06 48.1 9.3 100 123-233 163-266 (343)
306 KOG3924 Putative protein methy 95.1 0.11 2.4E-06 48.6 8.2 126 108-234 171-309 (419)
307 COG2933 Predicted SAM-dependen 95.0 0.15 3.3E-06 45.1 8.5 85 126-223 208-293 (358)
308 COG1565 Uncharacterized conser 94.9 0.15 3.3E-06 47.4 8.6 56 121-176 69-132 (370)
309 TIGR00027 mthyl_TIGR00027 meth 94.7 0.54 1.2E-05 42.4 11.7 105 130-236 82-200 (260)
310 KOG2912 Predicted DNA methylas 94.7 0.078 1.7E-06 48.1 5.9 90 117-206 88-188 (419)
311 PF03269 DUF268: Caenorhabditi 94.5 0.039 8.5E-07 45.1 3.3 100 130-237 2-115 (177)
312 TIGR02822 adh_fam_2 zinc-bindi 94.4 0.64 1.4E-05 43.3 11.9 95 123-233 159-254 (329)
313 TIGR00497 hsdM type I restrict 94.4 0.56 1.2E-05 46.6 12.0 108 129-236 217-358 (501)
314 KOG2078 tRNA modification enzy 94.4 0.021 4.5E-07 53.7 1.7 63 127-191 247-311 (495)
315 cd08230 glucose_DH Glucose deh 94.4 0.41 8.9E-06 45.0 10.6 96 127-233 170-269 (355)
316 PRK11524 putative methyltransf 94.2 0.05 1.1E-06 49.7 3.8 55 180-234 8-81 (284)
317 PF00145 DNA_methylase: C-5 cy 94.0 0.14 3E-06 47.6 6.6 70 132-209 2-74 (335)
318 KOG2651 rRNA adenine N-6-methy 94.0 0.26 5.7E-06 45.9 7.8 56 115-171 138-194 (476)
319 PF07757 AdoMet_MTase: Predict 93.9 0.07 1.5E-06 40.6 3.4 31 129-161 58-88 (112)
320 PF10237 N6-adenineMlase: Prob 93.7 1.8 3.9E-05 36.0 11.7 95 129-234 25-124 (162)
321 COG0686 Ald Alanine dehydrogen 93.5 0.22 4.7E-06 45.4 6.4 97 130-231 168-266 (371)
322 PF10354 DUF2431: Domain of un 93.5 0.74 1.6E-05 38.5 9.3 101 136-236 3-128 (166)
323 KOG2352 Predicted spermine/spe 93.5 0.078 1.7E-06 51.1 3.8 110 129-238 295-421 (482)
324 PF11312 DUF3115: Protein of u 93.5 0.19 4.1E-06 45.9 6.0 106 130-235 87-244 (315)
325 cd08237 ribitol-5-phosphate_DH 93.3 0.81 1.8E-05 42.9 10.3 95 126-233 160-256 (341)
326 PF03686 UPF0146: Uncharacteri 93.2 0.81 1.8E-05 36.0 8.3 92 129-238 13-107 (127)
327 PF05711 TylF: Macrocin-O-meth 93.1 0.45 9.9E-06 42.4 7.8 121 114-236 58-215 (248)
328 PRK05786 fabG 3-ketoacyl-(acyl 93.1 1.8 4E-05 37.8 11.9 103 129-234 4-136 (238)
329 PF07279 DUF1442: Protein of u 93.0 1.8 3.8E-05 37.5 10.9 101 129-234 41-149 (218)
330 cd05188 MDR Medium chain reduc 93.0 0.48 1E-05 42.1 8.1 94 128-234 133-233 (271)
331 TIGR03366 HpnZ_proposed putati 93.0 0.44 9.6E-06 43.2 7.9 99 123-233 114-218 (280)
332 PF00107 ADH_zinc_N: Zinc-bind 92.8 0.6 1.3E-05 36.7 7.6 85 139-236 1-92 (130)
333 TIGR00675 dcm DNA-methyltransf 92.7 0.17 3.7E-06 47.0 4.8 69 133-209 1-72 (315)
334 cd00401 AdoHcyase S-adenosyl-L 92.3 1.7 3.6E-05 41.9 11.0 98 118-233 189-289 (413)
335 PF02254 TrkA_N: TrkA-N domain 92.3 1.1 2.5E-05 34.4 8.4 88 138-235 4-98 (116)
336 COG0270 Dcm Site-specific DNA 92.2 0.34 7.5E-06 45.2 6.1 73 130-209 3-80 (328)
337 cd08239 THR_DH_like L-threonin 92.2 0.55 1.2E-05 43.8 7.6 100 123-233 157-262 (339)
338 cd08281 liver_ADH_like1 Zinc-d 92.0 0.59 1.3E-05 44.3 7.7 101 122-233 184-290 (371)
339 PF05206 TRM13: Methyltransfer 91.9 0.69 1.5E-05 41.6 7.5 75 117-192 6-86 (259)
340 TIGR03451 mycoS_dep_FDH mycoth 91.9 2.5 5.4E-05 39.8 11.8 100 123-233 170-276 (358)
341 PRK07576 short chain dehydroge 91.7 2.8 6.1E-05 37.5 11.5 74 129-204 8-94 (264)
342 PRK08213 gluconate 5-dehydroge 91.7 2.9 6.4E-05 37.1 11.5 76 129-206 11-99 (259)
343 COG0604 Qor NADPH:quinone redu 91.6 0.79 1.7E-05 42.8 7.9 102 121-234 134-242 (326)
344 PRK13699 putative methylase; P 91.4 0.22 4.7E-06 43.9 3.7 52 182-233 3-72 (227)
345 cd08255 2-desacetyl-2-hydroxye 91.4 2.6 5.5E-05 37.9 10.8 96 124-233 92-190 (277)
346 PRK01747 mnmC bifunctional tRN 91.3 0.64 1.4E-05 47.9 7.6 105 129-233 57-206 (662)
347 PLN03154 putative allyl alcoho 91.3 3.1 6.7E-05 39.1 11.7 99 123-232 152-257 (348)
348 COG0287 TyrA Prephenate dehydr 91.2 0.92 2E-05 41.3 7.6 89 131-229 4-94 (279)
349 TIGR00518 alaDH alanine dehydr 91.2 0.43 9.4E-06 45.4 5.8 100 129-233 166-267 (370)
350 cd08232 idonate-5-DH L-idonate 90.9 1.6 3.4E-05 40.6 9.2 92 128-232 164-261 (339)
351 TIGR02825 B4_12hDH leukotriene 90.8 4 8.7E-05 37.7 11.8 98 122-232 131-236 (325)
352 PF12692 Methyltransf_17: S-ad 90.7 0.98 2.1E-05 36.5 6.4 115 112-234 12-135 (160)
353 cd08234 threonine_DH_like L-th 90.6 4.8 0.0001 37.2 12.2 99 123-234 153-258 (334)
354 KOG1098 Putative SAM-dependent 90.6 0.42 9.1E-06 47.3 5.0 98 127-235 42-160 (780)
355 PRK07066 3-hydroxybutyryl-CoA 90.4 1.1 2.5E-05 41.6 7.6 99 130-234 7-120 (321)
356 TIGR01202 bchC 2-desacetyl-2-h 90.3 1.8 3.9E-05 39.8 9.0 87 129-234 144-232 (308)
357 PRK07806 short chain dehydroge 90.2 5.2 0.00011 35.2 11.6 103 129-233 5-134 (248)
358 PRK12939 short chain dehydroge 90.1 4.4 9.6E-05 35.5 11.1 76 129-206 6-94 (250)
359 COG1255 Uncharacterized protei 90.0 2.1 4.5E-05 33.1 7.3 89 130-236 14-105 (129)
360 PRK10458 DNA cytosine methylas 90.0 1.3 2.8E-05 43.4 7.9 77 130-209 88-182 (467)
361 PRK07814 short chain dehydroge 89.9 5.7 0.00012 35.4 11.7 75 129-205 9-96 (263)
362 KOG1201 Hydroxysteroid 17-beta 89.8 2.8 6.1E-05 38.1 9.2 74 129-206 37-124 (300)
363 TIGR03201 dearomat_had 6-hydro 89.7 5.8 0.00013 37.1 12.0 99 124-233 161-272 (349)
364 KOG0821 Predicted ribosomal RN 89.7 0.94 2E-05 39.2 5.8 73 117-191 38-110 (326)
365 cd08242 MDR_like Medium chain 89.6 7 0.00015 35.8 12.4 95 122-231 148-243 (319)
366 PLN02740 Alcohol dehydrogenase 89.4 3.4 7.4E-05 39.3 10.3 98 123-233 192-300 (381)
367 cd08245 CAD Cinnamyl alcohol d 89.4 6.7 0.00015 36.1 12.2 96 125-233 158-256 (330)
368 cd08261 Zn_ADH7 Alcohol dehydr 89.1 1.4 3.1E-05 40.9 7.4 100 123-233 153-258 (337)
369 PRK10309 galactitol-1-phosphat 88.9 1.6 3.5E-05 40.8 7.6 100 123-233 154-260 (347)
370 PF11899 DUF3419: Protein of u 88.9 1.2 2.6E-05 42.4 6.6 49 124-174 30-78 (380)
371 COG2961 ComJ Protein involved 88.7 6.1 0.00013 35.0 10.2 98 134-235 93-197 (279)
372 PRK07774 short chain dehydroge 88.7 8.3 0.00018 33.8 11.8 76 129-206 5-93 (250)
373 PRK07533 enoyl-(acyl carrier p 88.5 8.6 0.00019 34.2 11.8 76 129-206 9-98 (258)
374 PRK06940 short chain dehydroge 88.3 9.3 0.0002 34.4 11.9 97 132-231 4-123 (275)
375 PRK06181 short chain dehydroge 88.3 6.6 0.00014 34.9 10.9 74 131-206 2-88 (263)
376 cd08294 leukotriene_B4_DH_like 88.2 3.3 7.2E-05 38.1 9.1 96 123-232 137-240 (329)
377 COG1748 LYS9 Saccharopine dehy 88.1 4.2 9E-05 38.8 9.6 70 131-206 2-78 (389)
378 cd05565 PTS_IIB_lactose PTS_II 88.0 2.8 6.2E-05 31.6 6.9 76 132-233 2-78 (99)
379 KOG2539 Mitochondrial/chloropl 87.9 1.2 2.7E-05 42.8 5.9 108 129-237 200-319 (491)
380 PRK07109 short chain dehydroge 87.8 7.8 0.00017 36.2 11.4 76 129-206 7-95 (334)
381 cd05285 sorbitol_DH Sorbitol d 87.6 2.5 5.4E-05 39.4 8.0 100 123-233 156-265 (343)
382 PRK08293 3-hydroxybutyryl-CoA 87.6 5.7 0.00012 36.2 10.1 95 131-231 4-118 (287)
383 PF02153 PDH: Prephenate dehyd 87.5 1.3 2.8E-05 39.9 5.7 75 143-229 1-75 (258)
384 PRK09260 3-hydroxybutyryl-CoA 87.4 3.1 6.6E-05 38.0 8.2 98 132-235 3-119 (288)
385 PRK08265 short chain dehydroge 87.2 10 0.00022 33.8 11.4 72 129-205 5-89 (261)
386 PF05050 Methyltransf_21: Meth 87.1 1.9 4.2E-05 35.2 6.2 54 135-188 1-61 (167)
387 cd05278 FDH_like Formaldehyde 87.1 1.7 3.8E-05 40.4 6.6 97 125-232 163-266 (347)
388 PRK06701 short chain dehydroge 87.1 9.4 0.0002 34.7 11.3 104 129-234 45-182 (290)
389 PF11899 DUF3419: Protein of u 86.8 1.6 3.4E-05 41.7 6.0 62 176-237 272-338 (380)
390 PLN02494 adenosylhomocysteinas 86.7 4 8.6E-05 39.9 8.8 100 118-234 241-342 (477)
391 KOG2360 Proliferation-associat 86.7 2 4.3E-05 40.4 6.4 82 125-206 209-294 (413)
392 PF02737 3HCDH_N: 3-hydroxyacy 86.6 4 8.8E-05 34.5 7.9 99 132-237 1-118 (180)
393 cd08295 double_bond_reductase_ 86.5 10 0.00022 35.3 11.4 99 123-232 145-250 (338)
394 PLN02586 probable cinnamyl alc 86.3 8.4 0.00018 36.3 10.8 96 127-233 181-278 (360)
395 PRK08594 enoyl-(acyl carrier p 86.3 13 0.00027 33.2 11.5 77 129-205 6-96 (257)
396 PRK08306 dipicolinate synthase 86.3 8.2 0.00018 35.5 10.3 87 129-231 151-239 (296)
397 PLN03209 translocon at the inn 86.2 10 0.00022 38.1 11.6 80 125-205 75-168 (576)
398 TIGR00853 pts-lac PTS system, 86.2 5.1 0.00011 30.0 7.4 76 131-232 4-80 (95)
399 COG4017 Uncharacterized protei 86.2 3.5 7.6E-05 34.9 7.0 93 127-239 42-135 (254)
400 cd08300 alcohol_DH_class_III c 86.1 7 0.00015 36.9 10.2 99 123-233 180-288 (368)
401 cd08293 PTGR2 Prostaglandin re 86.0 11 0.00025 34.9 11.5 95 125-232 148-253 (345)
402 cd08238 sorbose_phosphate_red 86.0 4.6 0.0001 38.9 9.0 101 125-232 171-287 (410)
403 PLN02827 Alcohol dehydrogenase 85.9 6.8 0.00015 37.2 10.1 97 124-232 188-294 (378)
404 PRK08945 putative oxoacyl-(acy 85.8 6.3 0.00014 34.7 9.2 76 129-205 11-101 (247)
405 PRK08703 short chain dehydroge 85.7 5.7 0.00012 34.8 8.8 76 129-205 5-96 (239)
406 cd08236 sugar_DH NAD(P)-depend 85.7 3.4 7.5E-05 38.4 7.8 97 124-233 154-258 (343)
407 COG3315 O-Methyltransferase in 85.7 6.7 0.00014 36.1 9.4 102 130-234 93-210 (297)
408 KOG0023 Alcohol dehydrogenase, 85.6 5 0.00011 37.0 8.2 104 123-236 175-282 (360)
409 PF04072 LCM: Leucine carboxyl 85.5 6.9 0.00015 33.0 8.9 79 130-209 79-170 (183)
410 PRK08217 fabG 3-ketoacyl-(acyl 85.4 5.9 0.00013 34.7 8.9 75 129-205 4-91 (253)
411 PRK05808 3-hydroxybutyryl-CoA 85.3 7.2 0.00016 35.4 9.5 97 131-234 4-119 (282)
412 PF01262 AlaDh_PNT_C: Alanine 85.2 1.1 2.4E-05 37.4 3.7 93 129-229 19-135 (168)
413 TIGR02819 fdhA_non_GSH formald 85.0 12 0.00027 35.8 11.4 104 124-234 180-300 (393)
414 PF04378 RsmJ: Ribosomal RNA s 85.0 1.7 3.7E-05 38.6 5.0 97 134-234 62-165 (245)
415 PRK07530 3-hydroxybutyryl-CoA 84.9 13 0.00029 33.9 11.1 98 131-235 5-121 (292)
416 TIGR00936 ahcY adenosylhomocys 84.8 10 0.00022 36.6 10.4 89 128-234 193-283 (406)
417 PRK05476 S-adenosyl-L-homocyst 84.7 8.8 0.00019 37.2 10.0 87 129-233 211-299 (425)
418 cd08277 liver_alcohol_DH_like 84.7 16 0.00035 34.4 11.9 101 123-234 178-287 (365)
419 cd08231 MDR_TM0436_like Hypoth 84.6 11 0.00024 35.3 10.8 95 128-233 176-280 (361)
420 PRK07984 enoyl-(acyl carrier p 84.3 17 0.00038 32.5 11.4 76 129-206 5-94 (262)
421 PRK06128 oxidoreductase; Provi 84.2 16 0.00034 33.4 11.3 102 129-232 54-190 (300)
422 PRK08324 short chain dehydroge 84.0 9.8 0.00021 39.4 10.8 103 129-234 421-558 (681)
423 PRK12829 short chain dehydroge 83.7 16 0.00034 32.3 10.9 74 129-206 10-96 (264)
424 PRK07890 short chain dehydroge 83.5 8.4 0.00018 34.0 9.0 76 129-206 4-92 (258)
425 PRK09072 short chain dehydroge 83.5 19 0.00042 31.9 11.4 75 129-206 4-90 (263)
426 PF03514 GRAS: GRAS domain fam 83.4 22 0.00048 33.9 12.2 114 121-236 102-247 (374)
427 cd08233 butanediol_DH_like (2R 83.3 4.4 9.6E-05 37.9 7.4 100 123-233 166-272 (351)
428 PRK09291 short chain dehydroge 83.2 7.9 0.00017 34.1 8.7 73 131-205 3-82 (257)
429 cd08298 CAD2 Cinnamyl alcohol 83.2 32 0.00069 31.5 13.1 95 123-233 161-256 (329)
430 cd08285 NADP_ADH NADP(H)-depen 82.9 3.8 8.1E-05 38.3 6.8 99 123-232 160-265 (351)
431 PRK07454 short chain dehydroge 82.9 8 0.00017 33.8 8.5 76 129-206 5-93 (241)
432 cd05564 PTS_IIB_chitobiose_lic 82.7 6.3 0.00014 29.5 6.6 72 136-232 4-76 (96)
433 PF00106 adh_short: short chai 82.7 24 0.00051 28.6 10.9 73 132-206 2-90 (167)
434 cd08296 CAD_like Cinnamyl alco 82.5 21 0.00045 33.0 11.6 98 124-234 158-260 (333)
435 cd08278 benzyl_alcohol_DH Benz 82.5 3.9 8.5E-05 38.6 6.8 97 124-233 181-285 (365)
436 PRK06079 enoyl-(acyl carrier p 82.5 18 0.00039 32.0 10.7 74 129-206 6-93 (252)
437 PRK05565 fabG 3-ketoacyl-(acyl 82.4 18 0.0004 31.4 10.7 75 130-206 5-93 (247)
438 PLN02514 cinnamyl-alcohol dehy 82.3 25 0.00053 33.1 12.1 95 128-233 179-275 (357)
439 PLN02989 cinnamyl-alcohol dehy 82.2 16 0.00035 33.6 10.7 77 129-206 4-87 (325)
440 PRK15001 SAM-dependent 23S rib 82.2 19 0.00042 34.3 11.2 112 112-234 30-143 (378)
441 PRK05872 short chain dehydroge 82.1 18 0.00039 33.0 10.8 75 129-206 8-95 (296)
442 PRK12744 short chain dehydroge 82.1 22 0.00049 31.3 11.3 102 129-232 7-144 (257)
443 PRK07417 arogenate dehydrogena 82.0 6.8 0.00015 35.6 7.9 84 132-229 2-87 (279)
444 PRK07819 3-hydroxybutyryl-CoA 81.9 13 0.00029 33.9 9.7 99 131-236 6-124 (286)
445 PRK06124 gluconate 5-dehydroge 81.9 8.4 0.00018 34.0 8.4 76 129-206 10-98 (256)
446 COG5379 BtaA S-adenosylmethion 81.9 3.9 8.5E-05 37.1 5.9 47 127-175 61-107 (414)
447 PRK08415 enoyl-(acyl carrier p 81.9 30 0.00064 31.2 12.0 103 129-233 4-143 (274)
448 PRK07523 gluconate 5-dehydroge 81.6 8.2 0.00018 34.1 8.2 76 129-206 9-97 (255)
449 COG0863 DNA modification methy 81.5 6.7 0.00014 35.8 7.7 58 116-176 210-267 (302)
450 PLN02178 cinnamyl-alcohol dehy 81.1 10 0.00022 36.1 9.0 94 128-233 177-273 (375)
451 TIGR02441 fa_ox_alpha_mit fatt 81.0 7.4 0.00016 40.6 8.6 99 131-236 336-453 (737)
452 PRK12481 2-deoxy-D-gluconate 3 80.8 28 0.00061 30.7 11.4 74 129-206 7-93 (251)
453 TIGR02437 FadB fatty oxidation 80.8 9.7 0.00021 39.6 9.3 99 131-236 314-431 (714)
454 PRK08267 short chain dehydroge 80.7 18 0.00038 32.0 10.1 72 131-206 2-87 (260)
455 PF13561 adh_short_C2: Enoyl-( 80.5 15 0.00033 32.1 9.5 97 137-235 1-135 (241)
456 PRK07102 short chain dehydroge 80.3 9.4 0.0002 33.4 8.1 73 131-204 2-84 (243)
457 PRK11730 fadB multifunctional 80.3 11 0.00024 39.2 9.6 99 131-236 314-431 (715)
458 PRK11154 fadJ multifunctional 80.2 10 0.00022 39.4 9.3 101 130-236 309-428 (708)
459 PRK06125 short chain dehydroge 80.2 14 0.0003 32.8 9.1 76 129-205 6-90 (259)
460 KOG1209 1-Acyl dihydroxyaceton 80.0 7.9 0.00017 33.6 6.9 35 129-163 6-42 (289)
461 cd08265 Zn_ADH3 Alcohol dehydr 80.0 30 0.00065 32.8 11.9 98 125-233 199-307 (384)
462 PRK06182 short chain dehydroge 79.9 17 0.00037 32.4 9.8 69 130-206 3-84 (273)
463 PRK05866 short chain dehydroge 79.9 14 0.0003 33.8 9.2 75 129-205 39-126 (293)
464 PRK12743 oxidoreductase; Provi 79.9 39 0.00084 29.8 12.0 75 130-206 2-90 (256)
465 cd05281 TDH Threonine dehydrog 79.8 8.5 0.00018 35.8 8.0 96 127-233 161-262 (341)
466 PF01210 NAD_Gly3P_dh_N: NAD-d 79.8 7.8 0.00017 31.8 6.8 94 132-231 1-101 (157)
467 TIGR01963 PHB_DH 3-hydroxybuty 79.8 11 0.00025 33.0 8.5 74 131-206 2-88 (255)
468 PRK05708 2-dehydropantoate 2-r 79.5 11 0.00023 34.8 8.4 97 131-235 3-106 (305)
469 PRK03659 glutathione-regulated 79.5 8.4 0.00018 39.2 8.3 94 131-236 401-501 (601)
470 PF01555 N6_N4_Mtase: DNA meth 79.5 2.2 4.7E-05 37.0 3.7 26 212-237 35-60 (231)
471 cd08279 Zn_ADH_class_III Class 79.4 7 0.00015 36.8 7.3 98 123-233 176-282 (363)
472 KOG2782 Putative SAM dependent 79.3 2.5 5.5E-05 36.6 3.7 56 117-172 31-86 (303)
473 PRK06949 short chain dehydroge 79.3 12 0.00027 32.9 8.5 76 129-206 8-96 (258)
474 PRK07985 oxidoreductase; Provi 79.2 36 0.00078 30.9 11.8 103 129-233 48-185 (294)
475 PRK06196 oxidoreductase; Provi 79.0 22 0.00048 32.7 10.4 72 129-206 25-109 (315)
476 PLN02545 3-hydroxybutyryl-CoA 78.9 19 0.00041 32.9 9.8 97 131-234 5-120 (295)
477 PRK07502 cyclohexadienyl dehyd 78.8 11 0.00024 34.7 8.2 90 130-230 6-97 (307)
478 PRK09590 celB cellobiose phosp 78.7 16 0.00034 27.9 7.6 76 132-233 3-81 (104)
479 PRK11064 wecC UDP-N-acetyl-D-m 78.6 38 0.00082 32.8 12.1 95 131-236 4-122 (415)
480 cd05213 NAD_bind_Glutamyl_tRNA 78.6 28 0.00061 32.2 10.9 100 128-238 176-277 (311)
481 KOG0725 Reductases with broad 78.2 51 0.0011 29.8 12.2 76 129-206 7-99 (270)
482 PRK12746 short chain dehydroge 78.1 41 0.00089 29.4 11.6 75 130-206 6-100 (254)
483 COG0677 WecC UDP-N-acetyl-D-ma 78.1 16 0.00034 34.9 8.8 101 131-240 10-135 (436)
484 PRK07889 enoyl-(acyl carrier p 78.0 26 0.00056 31.1 10.2 101 129-233 6-145 (256)
485 PRK05225 ketol-acid reductoiso 78.0 3.7 8.1E-05 39.8 4.8 91 129-233 35-131 (487)
486 PF02086 MethyltransfD12: D12 77.9 3.9 8.4E-05 36.5 4.9 57 117-175 8-64 (260)
487 PRK06500 short chain dehydroge 77.9 44 0.00096 29.0 11.7 73 129-206 5-90 (249)
488 PRK07666 fabG 3-ketoacyl-(acyl 77.6 14 0.0003 32.2 8.3 75 130-206 7-94 (239)
489 PRK07326 short chain dehydroge 77.6 12 0.00026 32.5 7.8 74 129-205 5-91 (237)
490 PRK15057 UDP-glucose 6-dehydro 77.5 35 0.00076 32.7 11.4 101 132-237 2-121 (388)
491 PF06460 NSP13: Coronavirus NS 77.3 21 0.00046 31.9 8.8 108 117-236 44-172 (299)
492 PRK07904 short chain dehydroge 77.1 13 0.00029 32.9 8.1 78 128-206 6-97 (253)
493 KOG1205 Predicted dehydrogenas 77.1 45 0.00097 30.4 11.3 76 129-206 11-101 (282)
494 PRK08339 short chain dehydroge 76.9 16 0.00034 32.6 8.5 76 129-205 7-94 (263)
495 PF02826 2-Hacid_dh_C: D-isome 76.6 4.1 9E-05 34.3 4.4 90 129-231 35-125 (178)
496 PRK07370 enoyl-(acyl carrier p 76.6 39 0.00084 30.0 11.0 105 129-234 5-148 (258)
497 PRK05867 short chain dehydroge 76.6 15 0.00032 32.4 8.2 76 129-206 8-96 (253)
498 cd08286 FDH_like_ADH2 formalde 76.6 8.1 0.00018 35.9 6.8 98 124-232 161-265 (345)
499 PRK05854 short chain dehydroge 76.5 21 0.00045 32.9 9.4 77 129-206 13-103 (313)
500 PRK06194 hypothetical protein; 76.4 13 0.00028 33.5 8.0 75 130-206 6-93 (287)
No 1
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.1e-46 Score=328.35 Aligned_cols=264 Identities=33% Similarity=0.614 Sum_probs=238.3
Q ss_pred chhhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC
Q 018346 73 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 152 (357)
Q Consensus 73 ~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p 152 (357)
..+.++.|||+++++|+.+++|++.|+|++|.++..++.++|..+++.+++++.+++|.+|||||||+|.+++++|+++
T Consensus 16 ~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y- 94 (283)
T COG2230 16 AAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY- 94 (283)
T ss_pred hhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-
Confidence 3445689999999999999999999999999998889999999999999999999999999999999999999999998
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceE
Q 018346 153 NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 153 ~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l 229 (357)
+++|+|+++|+++.+.++++++..|+. +|++...|..++. ++||.|+|..+++|+ .+++.+++.+.++|+|||.+
T Consensus 95 ~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 95 GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 899999999999999999999999996 8999999999875 559999999999999 55999999999999999999
Q ss_pred EEEeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHh-hcCCcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHH
Q 018346 230 FVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKP 308 (357)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~ 308 (357)
++.+++.+..+.. ....|+.+|+||+|.+|+...+.. ..+....+..|...+.||.+|++.|.++|+++..++..
T Consensus 173 llh~I~~~~~~~~----~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a~~ 248 (283)
T COG2230 173 LLHSITGPDQEFR----RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRDEAIA 248 (283)
T ss_pred EEEEecCCCcccc----cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776553 368899999999999999888877 45555667778888999999999999999999999888
Q ss_pred HHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 018346 309 IMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354 (357)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 354 (357)
+ +++ .++++|+.|+.+|+.+|+.|..+ +.|++++|
T Consensus 249 ~----~~e----~~~r~w~~yl~~~~~~Fr~~~~~---~~q~~~~k 283 (283)
T COG2230 249 L----YDE----RFYRMWELYLAACAAAFRAGYID---VFQFTLTK 283 (283)
T ss_pred H----hhH----HHHHHHHHHHHHHHHHhccCCce---EEEEEeeC
Confidence 6 443 68999999999999999999966 55566554
No 2
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=1.3e-45 Score=332.06 Aligned_cols=261 Identities=36% Similarity=0.708 Sum_probs=206.3
Q ss_pred hhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc
Q 018346 75 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 154 (357)
Q Consensus 75 ~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~ 154 (357)
+.++.|||++++||+.+|+++|+|||++|..+..+++++|.++++.+++++++++|.+|||||||+|.+++.+++++ ++
T Consensus 8 ~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~ 86 (273)
T PF02353_consen 8 ENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GC 86 (273)
T ss_dssp HHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---
T ss_pred HHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-Cc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEE
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+|+|+++|+++.+.++++++..|+. ++++...|..+++ .+||.|+|..+++|+ .+++.+++++.++|||||++++
T Consensus 87 ~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 87 HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999999999999984 8999999998765 489999999999999 6889999999999999999999
Q ss_pred EeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHh-hcC-CcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHHH
Q 018346 232 HHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQD-DVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPI 309 (357)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~-~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~~ 309 (357)
..++....+.........+|+.+++||+|.+|+...+.. ..+ ++. +..|...|.||.+|++.|+++|.++..++.++
T Consensus 165 q~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~-v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i~~~ 243 (273)
T PF02353_consen 165 QTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLE-VEDVENLGRHYARTLRAWRENFDANREEIIAL 243 (273)
T ss_dssp EEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-E-EEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEE-EEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 998887765443323345999999999999999887777 443 455 56788889999999999999999999998775
Q ss_pred HHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 018346 310 MESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMV 347 (357)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 347 (357)
|++ .++++|++|+.+|+++|..|+.+.+|+
T Consensus 244 ----~~~----~f~r~w~~yl~~~~~~F~~g~~~~~Q~ 273 (273)
T PF02353_consen 244 ----FDE----EFYRMWRYYLAYCAAGFRAGSIDVFQI 273 (273)
T ss_dssp ----SHH----HHHHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred ----cCH----HHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence 554 689999999999999999999665543
No 3
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=100.00 E-value=9.9e-38 Score=294.42 Aligned_cols=258 Identities=31% Similarity=0.665 Sum_probs=224.1
Q ss_pred hhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc
Q 018346 75 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 154 (357)
Q Consensus 75 ~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~ 154 (357)
+.+..|||.++++|..++++.|+|+|++|.. ..++.+++..++..+++.+.+.++.+|||||||+|.++..+++.+ ++
T Consensus 114 ~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~ 191 (383)
T PRK11705 114 IVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GV 191 (383)
T ss_pred HhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CC
Confidence 3456999999999999999999999999964 578999999999999999999999999999999999999999876 78
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEE
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+|+|+|+++++.|++++. +. ++++...|..++ +++||.|++..+++|+ .++..+++++.++|||||.+++.
T Consensus 192 ~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 192 SVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999999999874 34 588888888765 3689999999999998 45688999999999999999998
Q ss_pred eccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHhhcCCcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHHHHHh
Q 018346 233 HFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMES 312 (357)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~~~~~ 312 (357)
.++...... ....|+.+|+||++.+|+...+....++...+..|...+.||.+|+..|.+++.++..++.+
T Consensus 267 ~i~~~~~~~-----~~~~~i~~yifp~g~lps~~~i~~~~~~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~---- 337 (383)
T PRK11705 267 TIGSNKTDT-----NVDPWINKYIFPNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELAD---- 337 (383)
T ss_pred EccCCCCCC-----CCCCCceeeecCCCcCCCHHHHHHHHHCCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHH----
Confidence 876554321 24679999999999999988877766555567788889999999999999999998887754
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 018346 313 TYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355 (357)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 355 (357)
.||+ .++++|++|+.+|+.+|+.|. .++.|++++|+
T Consensus 338 ~~~~----~~~r~w~~yl~~~~~~F~~~~---~~~~q~~~~~~ 373 (383)
T PRK11705 338 NYSE----RFYRMWRYYLLSCAGAFRARD---IQLWQVVFSPR 373 (383)
T ss_pred hCCH----HHHHHHHHHHHHHHHHHhCCC---ceEEEEEEEeC
Confidence 5775 689999999999999999999 55888899984
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.91 E-value=6.1e-22 Score=185.10 Aligned_cols=162 Identities=22% Similarity=0.408 Sum_probs=143.2
Q ss_pred hhhhhhhcCCChHHHHHhhcCCCCccccccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCcccHHHHH
Q 018346 74 DKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDA--SKTLEDAEKAMLELYCERSRL-----EDGHTVLDVGCGWGSLSLY 146 (357)
Q Consensus 74 ~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~--~~~l~~~~~~~l~~l~~~~~~-----~~~~~vLDiGcG~G~~~~~ 146 (357)
...+..|||...++|+.++++.++ .++|..+ .....+++..+++.+++.+++ .++.+|||||||+|..+..
T Consensus 58 ~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~ 135 (340)
T PLN02244 58 KEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRY 135 (340)
T ss_pred HHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHH
Confidence 345579999999999999998765 4788764 467888999999999998877 6788999999999999999
Q ss_pred HHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcc
Q 018346 147 IAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMK 224 (357)
Q Consensus 147 la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lk 224 (357)
+++.+ +++|+|+|+|+.+++.+++++...++ ++++|+.+|+.+.+++ ++||+|++..+++|+++...+++++.++||
T Consensus 136 La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLk 214 (340)
T PLN02244 136 LARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAA 214 (340)
T ss_pred HHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcC
Confidence 99887 78999999999999999999888877 4799999999887765 789999999999999999999999999999
Q ss_pred cCceEEEEeccCCC
Q 018346 225 EDTLLFVHHFCHKT 238 (357)
Q Consensus 225 pgG~l~~~~~~~~~ 238 (357)
|||.+++.+++...
T Consensus 215 pGG~lvi~~~~~~~ 228 (340)
T PLN02244 215 PGGRIIIVTWCHRD 228 (340)
T ss_pred CCcEEEEEEecccc
Confidence 99999998876644
No 5
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.89 E-value=2.5e-22 Score=196.15 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=158.4
Q ss_pred HHhHhcCC-CCHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHH
Q 018346 17 LSSLERNL-LPDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKL 90 (357)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~ 90 (357)
..+.++|+ .|...++.++...+. ..+.....+..+++...+.++++++ +++|+||++|+ ..||+..+.+.+.
T Consensus 14 ~~l~~~g~~~~~~~a~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~--~~F~g~~f~V~~~ 91 (506)
T PRK01544 14 DKLNKIGISSPQLEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGV--KEFYSREFIVNKH 91 (506)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCc--CEEcCcEEEeCCC
Confidence 33444665 356666666666654 2334445556677788899999988 99999999999 9999999999999
Q ss_pred hhcCCCCccccccCCCCCCHHHHHHHHHHHHH-----------------HHcCCCCCCEEEEECCcccHHHHHHHHHCCC
Q 018346 91 VLGKYFKYSCCYFSDASKTLEDAEKAMLELYC-----------------ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 153 (357)
Q Consensus 91 ~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~-----------------~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~ 153 (357)
+|+|| ++++.+.+.....+.... ......++.+|||+|||+|.+++.++...|+
T Consensus 92 VLIPR---------peTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~ 162 (506)
T PRK01544 92 VLIPR---------SDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPN 162 (506)
T ss_pred cccCC---------CcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCC
Confidence 99999 888888876433322100 0000113468999999999999999998888
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch-----------------------
Q 018346 154 CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----------------------- 209 (357)
Q Consensus 154 ~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~----------------------- 209 (357)
++|+++|+|+.+++.|++|+...++. +++++++|+.+....++||+|+||+++...
T Consensus 163 ~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~ 242 (506)
T PRK01544 163 ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEE 242 (506)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCc
Confidence 99999999999999999999988874 799999998653223679999999876321
Q ss_pred ---hhHHHHHHHHHHhcccCceEEEEec
Q 018346 210 ---KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 210 ---~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+..+++.+.++|+|||.+++++.
T Consensus 243 dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 243 DGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 2356688889999999999998753
No 6
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.89 E-value=5.9e-22 Score=180.45 Aligned_cols=193 Identities=16% Similarity=0.070 Sum_probs=145.6
Q ss_pred CHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh--ccCCccccchhhhhhhcCCChHHHHHhhcCCCCcc
Q 018346 26 PDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL--REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYS 99 (357)
Q Consensus 26 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~ 99 (357)
+...++.++...+. ..+.....+..++....+.++++++ +++|.||++|+ ..||+....+.+.++.|+
T Consensus 29 ~~~~a~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~--~~f~g~~f~v~~~vlipr---- 102 (284)
T TIGR03533 29 AWDEAVYLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIPVAYLTNE--AWFAGLEFYVDERVLIPR---- 102 (284)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHhCCCcHHHHcCC--CeecCcEEEECCCCccCC----
Confidence 45566666666653 2333445566677788899999888 37899999999 899998877777777776
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 018346 100 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 179 (357)
Q Consensus 100 ~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~ 179 (357)
++++.+... .+.. .+...++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.|++|+..++++
T Consensus 103 -----~~te~lv~~---~l~~---~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~ 171 (284)
T TIGR03533 103 -----SPIAELIED---GFAP---WLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE 171 (284)
T ss_pred -----CchHHHHHH---HHHH---HhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 444333322 1111 22223457999999999999999999988899999999999999999999998874
Q ss_pred -CeEEEEeccCCCccccCccEEEEcccccch-------------------------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 180 -NVEIIVADISTFEMEASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 180 -~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++++++|+.+....++||+|++|+++... ..+..+++.+.++|+|||++++++
T Consensus 172 ~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 172 DRVTLIQSDLFAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CcEEEEECchhhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 799999998653323579999999876321 224678899999999999999977
Q ss_pred cc
Q 018346 234 FC 235 (357)
Q Consensus 234 ~~ 235 (357)
..
T Consensus 252 g~ 253 (284)
T TIGR03533 252 GN 253 (284)
T ss_pred Cc
Confidence 53
No 7
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.88 E-value=5.7e-22 Score=182.11 Aligned_cols=192 Identities=16% Similarity=0.087 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-c-cCCccccchhhhhhhcCCChHHHHHhhcCCCCcc
Q 018346 26 PDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-R-EMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYS 99 (357)
Q Consensus 26 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~ 99 (357)
+...++.++...+. ..+.....+.+++....+.++++++ + ++|.||++|+ ..||+....+.+.++.|+
T Consensus 41 ~~~~a~~ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~--~~F~g~~f~v~~~vlipr---- 114 (307)
T PRK11805 41 AWDEAVQLVLHALHLPLDIPEPFLDARLTPSEKARILELIERRINERIPAAYLTNE--AWFCGLEFYVDERVLVPR---- 114 (307)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHHCCccHHHHcCc--ceEcCcEEEECCCCcCCC----
Confidence 45566666666654 2223344556677788899999888 4 8999999999 899998877777777766
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 018346 100 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 179 (357)
Q Consensus 100 ~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~ 179 (357)
++++.+... .+.. .+...+..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|++|+...++.
T Consensus 115 -----~~te~lv~~---~l~~---~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~ 183 (307)
T PRK11805 115 -----SPIAELIED---GFAP---WLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE 183 (307)
T ss_pred -----CchHHHHHH---HHHH---HhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 444333322 1211 12212236899999999999999999988899999999999999999999988874
Q ss_pred -CeEEEEeccCCCccccCccEEEEcccccc-------------------------hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 180 -NVEIIVADISTFEMEASYDRIYSIEMFEH-------------------------MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 180 -~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~-------------------------~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++++++|+.+....++||+|++|+++.. +..+..+++.+.++|+|||.+++++
T Consensus 184 ~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 184 DRVTLIESDLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CcEEEEECchhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 79999999866332357999999987632 1234678999999999999999976
Q ss_pred c
Q 018346 234 F 234 (357)
Q Consensus 234 ~ 234 (357)
.
T Consensus 264 g 264 (307)
T PRK11805 264 G 264 (307)
T ss_pred C
Confidence 5
No 8
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.88 E-value=1.2e-21 Score=173.20 Aligned_cols=201 Identities=20% Similarity=0.289 Sum_probs=151.4
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM 209 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~ 209 (357)
++|||||||+|..+..+++.+|+++|+|+|+|+++++.+++++...++. +++++..|+...+.+++||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999988889999999999999999999888774 799999998765545789999999999999
Q ss_pred hhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHh-h-cCCcEEEEeEEecCcc
Q 018346 210 KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-QDDVSVVDHWLVNGKH 287 (357)
Q Consensus 210 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~-~~~~~~~~~w~~~g~~ 287 (357)
++...+++++.++|||||.+++..+....... ....+.. ...++...... + ..++.+++. ...+.+
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~------~~~~s~~~~~~~l~~~Gf~~~~~-~~~~~~ 148 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSA-----IEHEETT------SYLVTREEWAELLARNNLRVVEG-VDASLE 148 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc-----ccccccc------cccCCHHHHHHHHHHCCCeEEEe-EECcHh
Confidence 99999999999999999999998774332110 0111111 12344443322 2 246666654 445788
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 018346 288 YAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 356 (357)
Q Consensus 288 y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 356 (357)
|.+++ |..++.++..++..+ .++ ..+.+.|. |+..++++|..|. ++.++++++|..
T Consensus 149 ~~~~l--~~~~f~~~~~~~~~~---~~~----~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~k~~ 204 (224)
T smart00828 149 IANFL--YDPGFEDNLERLYQD---DLD----EVTKRHFR-GIANLGKLLEKGL---ASYALLIVQKDE 204 (224)
T ss_pred Hhhhc--cChhHHHHHHHhccc---cch----HHHHHHHh-hHHHHHHHHHhch---HhhEEEEEeccc
Confidence 87766 777777766665543 343 35888996 5556656699998 789999999965
No 9
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.88 E-value=4.3e-22 Score=186.18 Aligned_cols=188 Identities=18% Similarity=0.152 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccc
Q 018346 26 PDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSC 100 (357)
Q Consensus 26 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~ 100 (357)
|...++.++.+.+. ..+.....+.++++.+.+.++++++ +++|.||++|. ..||+....+-+..+.|+
T Consensus 163 p~~dA~~LL~~~l~~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~--~~F~G~~f~V~p~vLIPR----- 235 (423)
T PRK14966 163 PKNEARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGV--REFYGRRFAVNPNVLIPR----- 235 (423)
T ss_pred hHHHHHHHHHHHHCcCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCCceeEeee--eeecCcEEEeCCCccCCC-----
Confidence 44556666666554 3334455667777888899999888 99999999999 899998887777777776
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 018346 101 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180 (357)
Q Consensus 101 ~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~ 180 (357)
++++.+.+ .+++.+ .++.+|||+|||+|.+++.++...|+++|+++|+|+.+++.|++|+...+. +
T Consensus 236 ----peTE~LVe-------~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-r 301 (423)
T PRK14966 236 ----PETEHLVE-------AVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-R 301 (423)
T ss_pred ----ccHHHHHH-------Hhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-c
Confidence 55444433 333332 345699999999999999999888889999999999999999999988876 8
Q ss_pred eEEEEeccCCCcc--ccCccEEEEcccccc-------------------------hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 181 VEIIVADISTFEM--EASYDRIYSIEMFEH-------------------------MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 181 v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~-------------------------~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++++++|+.+... .++||+|+||+|+.. +..++++++.+.+.|+|||.++++.
T Consensus 302 V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 302 VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999876422 257999999998721 1125678888899999999998876
Q ss_pred c
Q 018346 234 F 234 (357)
Q Consensus 234 ~ 234 (357)
.
T Consensus 382 G 382 (423)
T PRK14966 382 G 382 (423)
T ss_pred C
Confidence 4
No 10
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.88 E-value=2.6e-21 Score=176.68 Aligned_cols=202 Identities=16% Similarity=0.126 Sum_probs=152.2
Q ss_pred HHhHhcCC--CCHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHH
Q 018346 17 LSSLERNL--LPDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFK 89 (357)
Q Consensus 17 ~~~~~~~~--~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~ 89 (357)
..+.++|+ .+...++.++.+.+. ..+.....+.++++...+..+++++ +++|.+|++|. ..||+....+-.
T Consensus 12 ~~l~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~pl~yi~g~--~~f~g~~f~v~~ 89 (284)
T TIGR00536 12 SALSRAIARENPWLEALLLLLHDLGRERDLLLAFLTEELTPDEKERIFRLVLRRVKGVPVAYLLGS--KEFYGLEFFVNE 89 (284)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCc--ceEcCeEEEECC
Confidence 33434564 355566666666654 2233445556677788899999888 89999999999 899998877777
Q ss_pred HhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Q 018346 90 LVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 169 (357)
Q Consensus 90 ~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a 169 (357)
.++.|+ ++++.+.+. .+..+. ...+..+|||+|||+|.+++.++..+|+.+|+|+|+|+.+++.|
T Consensus 90 ~vliPr---------~ete~lv~~---~l~~~~---~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a 154 (284)
T TIGR00536 90 HVLIPR---------PETEELVEK---ALASLI---SQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVA 154 (284)
T ss_pred CCcCCC---------CccHHHHHH---HHHHhh---hcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 777777 555555443 222211 12233699999999999999999998889999999999999999
Q ss_pred HHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccc-------------------------hhhHHHHHHHHHHhc
Q 018346 170 EEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEH-------------------------MKNYQNLLKKISKWM 223 (357)
Q Consensus 170 ~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~-------------------------~~~~~~~l~~~~~~L 223 (357)
++|+...++. +++|+++|+.+.....+||+|++|+++.. +..+..+++.+.++|
T Consensus 155 ~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 155 EENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL 234 (284)
T ss_pred HHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 9999988875 59999999876322247999999986621 124678899999999
Q ss_pred ccCceEEEEecc
Q 018346 224 KEDTLLFVHHFC 235 (357)
Q Consensus 224 kpgG~l~~~~~~ 235 (357)
+|||++++++..
T Consensus 235 ~~gG~l~~e~g~ 246 (284)
T TIGR00536 235 KPNGFLVCEIGN 246 (284)
T ss_pred cCCCEEEEEECc
Confidence 999999998764
No 11
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.7e-21 Score=176.34 Aligned_cols=171 Identities=17% Similarity=0.159 Sum_probs=139.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHH
Q 018346 44 SGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYC 122 (357)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~ 122 (357)
.......++....+...+.++ ++.|.+|+++. ..|++....+.+.++.|+ ++++.+.+...
T Consensus 43 ~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~--~~f~gl~~~v~~~vliPr---------~dTe~Lve~~l------- 104 (280)
T COG2890 43 HPEAELSEEELERLRELLERRAEGEPVAYILGS--AEFGGLRFKVDEGVLIPR---------PDTELLVEAAL------- 104 (280)
T ss_pred ccccccCHHHHHHHHHHHHHHHCCCCHhHhhcc--CeecceeeeeCCCceecC---------CchHHHHHHHH-------
Confidence 344445667888888888888 89999999998 899999999999999998 77766665422
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
......+. +|||+|||||++++.++...|.++|+|+|+|+.+++.|++|+..+++.++.++.+|+.+.. .++||+|+|
T Consensus 105 ~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~~~fDlIVs 182 (280)
T COG2890 105 ALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-RGKFDLIVS 182 (280)
T ss_pred HhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-CCceeEEEe
Confidence 11111222 8999999999999999999998999999999999999999999999767788888877633 358999999
Q ss_pred ccccc-------------------------chhhHHHHHHHHHHhcccCceEEEEec
Q 018346 203 IEMFE-------------------------HMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 203 ~~~~~-------------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+- ++..+.+++..+.+.|+|||.+++++-
T Consensus 183 NPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 183 NPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 99872 123368899999999999999999765
No 12
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.87 E-value=1.9e-22 Score=168.45 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=158.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCcc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 198 (357)
..++..+++.+..+|.|+|||+|..+..|++++|++.++|+|.|++|++.|+.+. .+++|..+|+.++.++.+.|
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~d 94 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTD 94 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccc
Confidence 3466777888889999999999999999999999999999999999999886653 38999999999987777899
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCccccc---CCccchhhhcc---cCCCCCCCHHHHHh-h
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED---TNDDDWITKYF---FTGGTMPSANLLLY-F 271 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~p~~~~~~~-~ 271 (357)
++++|.+++++++..+++.++...|.|||++.++.|.....+.+... .....|-...- +....+++....-. +
T Consensus 95 llfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 95 LLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999998877765432 22234444321 11335555444333 3
Q ss_pred cCCcEEEEeEEecCccH---HHHHHHH---------HHHHHhc-----HHHHHHHHHhcCC-ccchHHHHHHHHHHHHHH
Q 018346 272 QDDVSVVDHWLVNGKHY---AQTSEEW---------LKRMDNN-----LASIKPIMESTYG-KDQAVKWTVYWRTFFIAV 333 (357)
Q Consensus 272 ~~~~~~~~~w~~~g~~y---~~tl~~w---------~~~l~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 333 (357)
......++-|++.+.|- ...+-+| ++.|.+. ...+.+++.+.|+ +.+|++.++|-|.|+++.
T Consensus 175 a~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~ 254 (257)
T COG4106 175 APLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVAT 254 (257)
T ss_pred CcccceeeeeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEe
Confidence 34456688898876543 1233344 4444432 3456777788888 467888888888877654
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.86 E-value=2.9e-20 Score=182.21 Aligned_cols=216 Identities=20% Similarity=0.339 Sum_probs=150.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
+.+++.+.+.++.+|||||||+|.++..+++.. +++|+|+|+|+.+++.|+++....+. +++|..+|+...+++ ++|
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~-~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKC-SVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCC-ceEEEEcCcccCCCCCCCE
Confidence 345555566778899999999999999999876 78999999999999999988754332 799999999887654 689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhcccC-CCCCCCHHHHHhhc--CC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFT-GGTMPSANLLLYFQ--DD 274 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~--~~ 274 (357)
|+|+|..+++|++++..+++++.++|||||.+++.++....... .. ....++.. +..+++........ .|
T Consensus 334 D~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~-~~~~~~~~~g~~~~~~~~~~~~l~~aG 406 (475)
T PLN02336 334 DVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP------SP-EFAEYIKQRGYDLHDVQAYGQMLKDAG 406 (475)
T ss_pred EEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cH-HHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999876543221 11 11222222 23445544444332 46
Q ss_pred cEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 018346 275 VSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354 (357)
Q Consensus 275 ~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 354 (357)
+..+. +...+.+|.+++..|...+.++..++.. .++++........|. ...+.+..+. --|++ |+++|
T Consensus 407 F~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~----~~~~~~~~~~-~~wg~--~~a~k 474 (475)
T PLN02336 407 FDDVI-AEDRTDQFLQVLQRELDAVEKEKDEFIS----DFSEEDYNDIVGGWK----AKLVRSSSGE-QKWGL--FIAKK 474 (475)
T ss_pred Ceeee-eecchHHHHHHHHHHHHHHHhCHHHHHH----hcCHHHHHHHHHhHH----HHHhhhcCCc-eeeEE--EEEec
Confidence 66664 3445678999999999988877666644 466543333333343 2333344433 22554 44666
Q ss_pred c
Q 018346 355 K 355 (357)
Q Consensus 355 ~ 355 (357)
+
T Consensus 475 ~ 475 (475)
T PLN02336 475 K 475 (475)
T ss_pred C
Confidence 4
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.85 E-value=1.1e-20 Score=164.93 Aligned_cols=120 Identities=23% Similarity=0.363 Sum_probs=109.4
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
.+++.....+|.+|||+|||||.++..+++..+.++|+|+|+|+.|++.|++++...+..+++|+++|++++|++ ++||
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccC
Confidence 345555666899999999999999999999987789999999999999999999988776799999999999988 8999
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+|.+...++++++++++|+++.|+|||||++++..+..+..
T Consensus 122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 99999999999999999999999999999999988877643
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.83 E-value=7.4e-19 Score=158.64 Aligned_cols=235 Identities=17% Similarity=0.299 Sum_probs=155.2
Q ss_pred CChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCC
Q 018346 83 LPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS 162 (357)
Q Consensus 83 ~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s 162 (357)
.+-..|+..++... +.++. +. ....+++.+.+.++.+|||||||+|..+..+++.+ +++|+|+|+|
T Consensus 19 ~~~~~~e~~~g~~~------~~~gg--~~-----~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s 84 (263)
T PTZ00098 19 EGIKAYEFIFGEDY------ISSGG--IE-----ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDIC 84 (263)
T ss_pred ccchhHHHHhCCCC------CCCCc--hH-----HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECC
Confidence 34567888888642 22221 11 23456677788899999999999999999998765 6899999999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 163 KTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 163 ~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+.+++.|+++... .+++.+..+|+.+.+++ ++||+|++..+++|++ +...+++++.++|||||.+++..+.....
T Consensus 85 ~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~ 162 (263)
T PTZ00098 85 EKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI 162 (263)
T ss_pred HHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 9999999987654 23799999999876655 7899999999888874 78999999999999999999988765432
Q ss_pred CcccccCCccchhhhcccC-CCCCCCH-HHHHhhc-CCcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHHHHHhcCCc
Q 018346 240 AYHFEDTNDDDWITKYFFT-GGTMPSA-NLLLYFQ-DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGK 316 (357)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~~~p~~-~~~~~~~-~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~ 316 (357)
.. . ... ...++.. ...+++. .....+. .++..++.. ..+.++.+.+..-++.+.++..++ .+.+|+
T Consensus 163 ~~-~----~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~-d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 231 (263)
T PTZ00098 163 EN-W----DEE-FKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK-DISDYWLELLQVELKKLEEKKEEF----LKLYSE 231 (263)
T ss_pred cC-c----HHH-HHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE-eCcHHHHHHHHHHHHHHHHhHHHH----HHhcCH
Confidence 11 0 001 1111100 1123333 3333333 467666543 334445455444445555544444 445787
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q 018346 317 DQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTH 349 (357)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 349 (357)
+........|....-.|.. | -+.|++-+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~----~-~~~wg~~~ 259 (263)
T PTZ00098 232 KEYNSLKDGWTRKIKDTKR----K-LQKWGYFK 259 (263)
T ss_pred HHHHHHHHHHHHHHHHhhc----c-ccccceEe
Confidence 6656666777666666553 3 35588865
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.83 E-value=2.4e-20 Score=164.61 Aligned_cols=119 Identities=22% Similarity=0.330 Sum_probs=91.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
+++.....++.+|||+|||+|.++..+++.. |..+|+|+|+|+.|++.|+++....+..+|+++++|++++|++ ++||
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EE
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCcee
Confidence 3344456688999999999999999999875 5689999999999999999999988877999999999999877 8899
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+|++...++++++..+.++++.++|||||++++..++.+..
T Consensus 119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 99999999999999999999999999999999988877653
No 17
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.82 E-value=2.9e-19 Score=162.93 Aligned_cols=190 Identities=17% Similarity=0.164 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccc
Q 018346 26 PDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSC 100 (357)
Q Consensus 26 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~ 100 (357)
+...++.++...+. ........+...+....+.++++++ ++.|.+|+.+. ..||+....+...++.|+
T Consensus 18 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~--~~f~~~~~~~~~~~lipr----- 90 (275)
T PRK09328 18 PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGE--AEFWGLDFKVSPGVLIPR----- 90 (275)
T ss_pred cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHcee--ceEcCcEEEECCCceeCC-----
Confidence 34444445554443 2233344444566668888899888 88899999998 888887666666666665
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 018346 101 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180 (357)
Q Consensus 101 ~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~ 180 (357)
++++.+.+. ++......++.+|||+|||+|.++..++...|..+|+|+|+|+.+++.|++++......+
T Consensus 91 ----~~te~l~~~-------~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~ 159 (275)
T PRK09328 91 ----PETEELVEW-------ALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGAR 159 (275)
T ss_pred ----CCcHHHHHH-------HHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCc
Confidence 444444332 333334456789999999999999999999888999999999999999999987333348
Q ss_pred eEEEEeccCCCccccCccEEEEcccccch--------------------------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 181 VEIIVADISTFEMEASYDRIYSIEMFEHM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 181 v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+.++.+|+.+....++||+|++++++... ..+..+++++.++|+|||.++++.
T Consensus 160 i~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 160 VEFLQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred EEEEEccccCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 99999998764323689999999876421 235678888999999999999965
No 18
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.82 E-value=2.6e-19 Score=160.19 Aligned_cols=181 Identities=10% Similarity=0.053 Sum_probs=132.6
Q ss_pred hHhcCC-CCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCC
Q 018346 19 SLERNL-LPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYF 96 (357)
Q Consensus 19 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~ 96 (357)
+.++|+ .|...++.++.+... ...+..+++++ +++|.||++|. ..|++....+....+.|+
T Consensus 5 ~~~~g~~~~~~~a~~l~~~~~~--------------~~~~~~~~~rr~~~~Pl~yi~g~--~~f~g~~~~v~~~vf~pr- 67 (251)
T TIGR03704 5 LRAAGCVFAEDEAALLVDAART--------------PGELAAMVDRRVAGLPLEHVLGW--AEFCGLRIAVDPGVFVPR- 67 (251)
T ss_pred HHhcCCCCHHHHHHHHHHhccC--------------HHHHHHHHHHHHcCCCHHHhccc--CeEcCeEEEECCCCcCCC-
Confidence 345676 477888877777621 34577788888 99999999998 888776544444444333
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH
Q 018346 97 KYSCCYFSDASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 97 ~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~ 175 (357)
++++.+. +.++..+. ..++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.|++|+..
T Consensus 68 --------~~Te~Lv-------~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 68 --------RRTEFLV-------DEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred --------ccHHHHH-------HHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3333332 23333222 1234689999999999999999888888999999999999999999987
Q ss_pred cCCCCeEEEEeccCCCcc---ccCccEEEEcccccch--------------------------hhHHHHHHHHHHhcccC
Q 018346 176 LELQNVEIIVADISTFEM---EASYDRIYSIEMFEHM--------------------------KNYQNLLKKISKWMKED 226 (357)
Q Consensus 176 ~~~~~v~~~~~d~~~~~~---~~~fD~Ii~~~~~~~~--------------------------~~~~~~l~~~~~~Lkpg 226 (357)
++ ++++++|+.+... .++||+|++|+++... ..+..+++.+.++|+||
T Consensus 133 ~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g 209 (251)
T TIGR03704 133 AG---GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG 209 (251)
T ss_pred cC---CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 64 4789999876321 2579999999987421 11457888889999999
Q ss_pred ceEEEEec
Q 018346 227 TLLFVHHF 234 (357)
Q Consensus 227 G~l~~~~~ 234 (357)
|++++++.
T Consensus 210 G~l~l~~~ 217 (251)
T TIGR03704 210 GHLLVETS 217 (251)
T ss_pred CEEEEEEC
Confidence 99999765
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.81 E-value=4.7e-19 Score=139.07 Aligned_cols=105 Identities=21% Similarity=0.398 Sum_probs=90.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEecc-CCCccccCccEEEEcc-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADI-STFEMEASYDRIYSIE-M 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~-~~~~~~~~fD~Ii~~~-~ 205 (357)
|+.+|||||||+|..+..+++..|+++|+|+|+|+.+++.|++++...+. ++++++++|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 57899999999999999999977899999999999999999999966555 5999999999 4444347899999999 4
Q ss_pred ccch---hhHHHHHHHHHHhcccCceEEEEe
Q 018346 206 FEHM---KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 206 ~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++++ ++..++++.+.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4433 567889999999999999999875
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=9.8e-20 Score=156.25 Aligned_cols=109 Identities=27% Similarity=0.406 Sum_probs=100.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
++.+|||+|||.|.++..+|+. |+.|+|+|+|+.+++.|+..+...++ ++.+.+..++++... ++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 6899999999999999999998 79999999999999999999999988 688888888876544 7999999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccCCCCC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 240 (357)
|++++..+++.|.+++||||.+++++++....+
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 999999999999999999999999999865543
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.80 E-value=9e-19 Score=145.31 Aligned_cols=108 Identities=28% Similarity=0.496 Sum_probs=98.1
Q ss_pred CCCCEEEEECCcccHHHHHHHH-HCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~-~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|.++..+++ ..|+.+++|+|+|+++++.|+++++..+.++++|.++|+.+++ .+++||+|+++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 3578999999999999999994 4678999999999999999999999999889999999999965 336899999999
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+++++.+...+++++.+.|+|||.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998775
No 22
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.80 E-value=3e-18 Score=154.50 Aligned_cols=189 Identities=19% Similarity=0.185 Sum_probs=135.1
Q ss_pred CCCCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhccCCccccchhhhhhhcCCChHHHHHhhcCCCCccccc
Q 018346 23 NLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCY 102 (357)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~ 102 (357)
|+......+..+...+..++....-.++.+.+..+. ..+ +.+..+.+++. +..+.++
T Consensus 16 Gi~~~~~k~~~l~~rl~~r~~~~~~~~~~~y~~~l~-------~~~---------------~~~e~~~l~~~-lti~~T~ 72 (264)
T smart00138 16 GIVLTDYKRTLLQSRLSRRLRVLGLKDFSEYLELLT-------SHR---------------GEEELAELLDL-MTTNETR 72 (264)
T ss_pred CCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHh-------cCC---------------cHHHHHHHHHH-hhcCCCc
Confidence 777777777788888887777666555555544332 111 11222322222 3444467
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHHCC-----CcEEEEEcCCHHHHHHHHHHH
Q 018346 103 FSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKITGICNSKTQKEFIEEQC 173 (357)
Q Consensus 103 f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~p-----~~~v~~vD~s~~~l~~a~~~~ 173 (357)
|.++...++......+..+++.....++.+|||+|||+|. +++.+++.+| +.+|+|+|+|+.+++.|++..
T Consensus 73 FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 73 FFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred ccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 7777777777777777777665444566899999999996 5666666554 479999999999999999854
Q ss_pred HH----cC----------------------C-CCeEEEEeccCCCccc-cCccEEEEcccccchh--hHHHHHHHHHHhc
Q 018346 174 RV----LE----------------------L-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWM 223 (357)
Q Consensus 174 ~~----~~----------------------~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~L 223 (357)
.. .+ + ++|+|.++|+.+.+++ ++||+|+|..+++|++ +..++++++.++|
T Consensus 153 y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L 232 (264)
T smart00138 153 YPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEAL 232 (264)
T ss_pred CCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHh
Confidence 10 00 1 2689999999987653 7899999999999994 5568999999999
Q ss_pred ccCceEEEEec
Q 018346 224 KEDTLLFVHHF 234 (357)
Q Consensus 224 kpgG~l~~~~~ 234 (357)
+|||++++...
T Consensus 233 ~pGG~L~lg~~ 243 (264)
T smart00138 233 KPGGYLFLGHS 243 (264)
T ss_pred CCCeEEEEECc
Confidence 99999998543
No 23
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.78 E-value=3.1e-18 Score=148.13 Aligned_cols=177 Identities=20% Similarity=0.219 Sum_probs=140.7
Q ss_pred CCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHc
Q 018346 47 KPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS 125 (357)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~ 125 (357)
.+....+.+.+..+.+++ ++.|.||+.|+ ..|-|+.-..-+.+++|| ++++.+.+...+.+.. .
T Consensus 80 ~pl~~~ql~~i~~~~~~R~~r~PlQYIlg~--~~F~~l~l~~~pgVlIPR---------pETEE~V~~Vid~~~~----~ 144 (328)
T KOG2904|consen 80 DPLVILQLESIRWACLQRYKRMPLQYILGS--QPFGDLDLVCKPGVLIPR---------PETEEWVEAVIDALNN----S 144 (328)
T ss_pred cccchhHHHHHHHHHHHHHhcCChhheecc--CccCCceEEecCCeeecC---------ccHHHHHHHHHHHHhh----h
Confidence 344566788888888766 99999999999 899999989999999999 8887777664443332 2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC---cc---ccCcc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF---EM---EASYD 198 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~---~~---~~~fD 198 (357)
....+..|||+|||+|+++..++...|.+.|+++|.|+.++..|.+|+...++. ++.+++.+++.. +. .+++|
T Consensus 145 ~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 145 EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCcee
Confidence 233556899999999999999999999999999999999999999999998874 777775554431 11 27899
Q ss_pred EEEEcccc--------------------------cchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 199 RIYSIEMF--------------------------EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 199 ~Ii~~~~~--------------------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+++||+++ ++...+..++.-+.+.|+|||.+.++....+.
T Consensus 225 llvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 225 LLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred EEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence 99999987 22334667888889999999999998775543
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.78 E-value=1.1e-17 Score=141.21 Aligned_cols=130 Identities=23% Similarity=0.352 Sum_probs=103.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 018346 99 SCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 178 (357)
Q Consensus 99 ~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~ 178 (357)
.++.|.+ ..++....-+++.+... ++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.+++++..+++
T Consensus 7 ~~gvFs~--~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170)
T PF05175_consen 7 HPGVFSP--PRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170)
T ss_dssp ETTSTTT--TSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred CCCeeCC--CCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 3466663 35555555455544433 57799999999999999999999888999999999999999999999998
Q ss_pred CCeEEEEeccCCCccccCccEEEEcccccchh-----hHHHHHHHHHHhcccCceEEEEec
Q 018346 179 QNVEIIVADISTFEMEASYDRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 179 ~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+++++..|+.+....++||+|+||+|++.-. ....+++.+.++|||||.+++...
T Consensus 81 ~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 81 ENVEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTEEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 66999999998754447899999999987553 368899999999999999987554
No 25
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.78 E-value=7.2e-18 Score=151.57 Aligned_cols=169 Identities=19% Similarity=0.226 Sum_probs=125.7
Q ss_pred CCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHH
Q 018346 46 YKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCER 124 (357)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~ 124 (357)
......++...+..+++++ .+.|.+++.+. ..+|+....+....+.++ +++ ..++..+++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~--~~~~~~~~~~~~~~~~p~---------~~~-------~~l~~~~l~~ 83 (251)
T TIGR03534 22 EKELTPEELARFEALLARRAKGEPVAYILGE--REFYGLDFKVSPGVLIPR---------PDT-------EELVEAALER 83 (251)
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCHHHHccc--ceEeceEEEECCCcccCC---------CCh-------HHHHHHHHHh
Confidence 3444567778888888888 78899999886 666654433222222222 111 1233334444
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcc
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
+. ..+.+|||+|||+|.++..++...|+.+++|+|+|+.+++.+++++...+++++.++.+|+.+....++||+|++++
T Consensus 84 ~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np 162 (251)
T TIGR03534 84 LK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNP 162 (251)
T ss_pred cc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECC
Confidence 33 34569999999999999999998888899999999999999999999888878999999987633237899999999
Q ss_pred cccchh--------------------------hHHHHHHHHHHhcccCceEEEEe
Q 018346 205 MFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 205 ~~~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++.... .+..+++.+.++|+|||.+++..
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 875321 13467899999999999999864
No 26
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=7.9e-18 Score=151.77 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=100.8
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHH---cCCCCeEEEEeccCCCccc-cC
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRV---LELQNVEIIVADISTFEME-AS 196 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~---~~~~~v~~~~~d~~~~~~~-~~ 196 (357)
++.+.+.++.+|||+|||+|.++..+++.. |..+|+|+|+|++|++.|+++... ...++++++++|+.+++++ ++
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s 145 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY 145 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC
Confidence 344566778999999999999999999875 567999999999999999877542 2234899999999988776 78
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
||+|+++.++++++++..+++++.++|||||.+++.++..+.
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999999999999999999999999999998887644
No 27
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=3.2e-18 Score=154.25 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
....+++.+...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|+++ +++++++|+.+++..++
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~ 89 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPD 89 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCC
Confidence 34456777777788999999999999999999998889999999999999988652 67899999987654478
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++.++++++++..+++++.++|||||.+++..+..
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 9999999999999999999999999999999999987653
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.76 E-value=2e-17 Score=146.90 Aligned_cols=118 Identities=17% Similarity=0.267 Sum_probs=104.1
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
.++..+.+.++.+|||+|||+|..+..+++.. |+.+|+|+|+|+.+++.++++....+.++++++.+|..+.+.+ ++|
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence 35556677788999999999999999999875 5689999999999999999998887777899999999887654 789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|+|+++.++++++++..+++++.++|+|||.+++..++.+
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 9999999999999999999999999999999998776543
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.76 E-value=1.5e-17 Score=143.78 Aligned_cols=110 Identities=21% Similarity=0.337 Sum_probs=94.9
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+++.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++....+++++++...|+.+.+++++||+|
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 99 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFI 99 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEE
Confidence 344445556789999999999999999987 789999999999999999999888887799999999876655789999
Q ss_pred EEcccccchh--hHHHHHHHHHHhcccCceEEEE
Q 018346 201 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 201 i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+++.++++++ +...+++++.++|+|||.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999998873 5789999999999999996554
No 30
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.75 E-value=7.5e-18 Score=127.69 Aligned_cols=94 Identities=23% Similarity=0.421 Sum_probs=83.2
Q ss_pred EEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccchhhH
Q 018346 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNY 212 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~ 212 (357)
||+|||+|..+..+++. ++.+|+++|+|+++++.++++.... ++.+..+|+.+++++ ++||+|+++.+++++++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999988 7889999999999999999887654 566999999998876 899999999999999999
Q ss_pred HHHHHHHHHhcccCceEEE
Q 018346 213 QNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 213 ~~~l~~~~~~LkpgG~l~~ 231 (357)
.++++++.++|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999985
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=2.8e-17 Score=148.45 Aligned_cols=115 Identities=19% Similarity=0.314 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
....++..+.+.++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|+++. +++.++.+|+.++...++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~ 93 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQA 93 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCC
Confidence 344566677777889999999999999999999988899999999999999998763 378899999987654478
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++.+++++++...+++++.++|||||.+++..+..
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 9999999999999999999999999999999999986543
No 32
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.74 E-value=2.6e-17 Score=151.51 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=95.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
.++.+|||||||+|.++..+++. +++|+|+|+|+++++.|++++...+. .+++++++|+.+++.. ++||+|++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 35679999999999999999875 78999999999999999988765544 3899999999887654 68999999999
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++|++++..+++++.++|||||.+++.+++..
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 99999999999999999999999999988653
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.74 E-value=1.2e-16 Score=137.85 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=91.4
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++.+...|+...+.+++||+|++
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~ 100 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFS 100 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEE
Confidence 3344445679999999999999999986 78999999999999999999888877 58888888876554568999999
Q ss_pred cccccch--hhHHHHHHHHHHhcccCceEEEEe
Q 018346 203 IEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 203 ~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+.+++++ ++...+++.+.++|+|||++++..
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 9999987 457789999999999999966544
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.74 E-value=7.8e-17 Score=137.35 Aligned_cols=105 Identities=23% Similarity=0.286 Sum_probs=93.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
++++.+|||+|||+|..+..++...|+++|+++|+|+.+++.|+++++..++++++++.+|+.+.+..++||+|+++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~-- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA-- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc--
Confidence 345889999999999999999988888999999999999999999999999878999999998865456899999975
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+.++..+++.+.+.|+|||.+++....
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 346788999999999999999987654
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.73 E-value=1.4e-16 Score=135.59 Aligned_cols=101 Identities=26% Similarity=0.353 Sum_probs=88.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.++++++..++++++++++|+.++...++||+|+++. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-L-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-h--
Confidence 4789999999999999999988888899999999999999999999888878999999998865447899999986 3
Q ss_pred hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.++..+++.+.++|+|||.+++..
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 355678888999999999999864
No 36
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.73 E-value=6.5e-17 Score=145.69 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=101.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc--cc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME 194 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~ 194 (357)
+..+++.+. .++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|+++....++ ++++++++|+.++. .+
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 445666555 45679999999999999999987 68999999999999999999988876 48999999987753 23
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++||+|++..++++++++..+++++.++|||||.+++..++..
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 7899999999999999999999999999999999998766643
No 37
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.72 E-value=3.6e-16 Score=132.42 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=92.7
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+++.....++.++||+|||.|..+.+||++ |..|+++|+|+.+++.+.+.+...++ .|+..+.|+.+..+++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEE
Confidence 333344556789999999999999999998 89999999999999999999888888 699999999887766789999
Q ss_pred EEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 201 YSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 201 i~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++..+++++ +..+.+++.+.+.++|||++++.++.
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 999888888 55678999999999999999887654
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=1.7e-16 Score=142.17 Aligned_cols=106 Identities=24% Similarity=0.351 Sum_probs=93.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHH--CCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQK--YSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~--~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|..+..+++. .|+++|+|+|+|+.|++.|++++...+.. +++++++|+.+.+. ..+|+|+++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehhh
Confidence 46789999999999999999874 47899999999999999999999887664 79999999988764 4599999999
Q ss_pred cccchh--hHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++++++ +...+++++.+.|||||.+++...
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999884 356899999999999999999764
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.71 E-value=5.9e-16 Score=123.43 Aligned_cols=114 Identities=20% Similarity=0.273 Sum_probs=95.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-c-cc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-M-EA 195 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-~-~~ 195 (357)
...+++.+.+.++.+|||+|||+|..+..+++..|+.+|+++|+|+.+++.+++++...+.++++++..|+.... . .+
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 334556666777889999999999999999999888899999999999999999998888778999999876422 1 26
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+||+|++..+.. ...++++.+.+.|+|||.+++...
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 899999977654 346899999999999999998653
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.70 E-value=1.6e-16 Score=142.81 Aligned_cols=118 Identities=15% Similarity=0.232 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 193 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~ 193 (357)
+......+++.+...++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.++++.. .+.++++|+..+++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~ 99 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPL 99 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcC
Confidence 4445566667666556789999999999999998875 6899999999999999887642 35688999988765
Q ss_pred c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 194 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+ ++||+|+++.++++.+++..++.++.++|+|||.+++.++....
T Consensus 100 ~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 100 ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 5 68999999999999999999999999999999999999887654
No 41
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.70 E-value=3.3e-17 Score=141.57 Aligned_cols=107 Identities=28% Similarity=0.457 Sum_probs=92.7
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-C-----CeEEEEeccCCCccccCccEEEEc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-----NVEIIVADISTFEMEASYDRIYSI 203 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~-----~v~~~~~d~~~~~~~~~fD~Ii~~ 203 (357)
|.+|||+|||.|-++..||+. ++.|+|+|+++++++.|++....... . ++.+.+.|++... ++||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeH
Confidence 478999999999999999988 89999999999999999998544332 1 3677777777654 569999999
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCC
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 240 (357)
.+++|+.++..++..+.++|||||.+++.+.++....
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS 202 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILS 202 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHH
Confidence 9999999999999999999999999999998775443
No 42
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.70 E-value=4.2e-16 Score=145.98 Aligned_cols=128 Identities=13% Similarity=0.174 Sum_probs=101.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-
Q 018346 100 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL- 178 (357)
Q Consensus 100 ~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~- 178 (357)
+++|..+ .++...+- +++.++...+.+|||+|||+|.+++.+++.+|..+|+++|+|+.+++.|++|++.++.
T Consensus 205 ~gVFs~~--~LD~Gtrl----lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~ 278 (378)
T PRK15001 205 ANVFSRT--GLDIGARF----FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 278 (378)
T ss_pred CCccCCC--CcChHHHH----HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 4777754 44443333 3444444445699999999999999999999999999999999999999999987764
Q ss_pred --CCeEEEEeccCCCccccCccEEEEcccccch-----hhHHHHHHHHHHhcccCceEEEEe
Q 018346 179 --QNVEIIVADISTFEMEASYDRIYSIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 179 --~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+++++..|..+...+.+||+|+||++++.. ....++++.+.++|+|||.+++..
T Consensus 279 ~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 279 ALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3689999998653323589999999999754 234678999999999999999985
No 43
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.69 E-value=3.9e-16 Score=134.06 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=105.8
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC------cEEEEEcCCHHHHHHHHHHHHHcCCC---CeEEEEeccCCC
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN------CKITGICNSKTQKEFIEEQCRVLELQ---NVEIIVADISTF 191 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~------~~v~~vD~s~~~l~~a~~~~~~~~~~---~v~~~~~d~~~~ 191 (357)
.+.+++..++.++||++||||.++..+.++.+. .+|+++|+||.|++.+++++.+.++. ++.|+.+|++++
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 455667778899999999999999999988755 79999999999999999999887762 489999999999
Q ss_pred ccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 192 EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 192 ~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
|++ ++||...+...+.++.++.+.+++++|+|||||++.+-.++...
T Consensus 172 pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 988 89999999999999999999999999999999999988776654
No 44
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.68 E-value=2.3e-15 Score=138.08 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~ 195 (357)
+...++..+...++.+|||+|||+|.++..++...+ ..|+|+|+|+.++..++......+ ..++.+...++.+++...
T Consensus 109 ~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 109 KWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 344566666666789999999999999999887743 479999999999877544322222 237888889988876556
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|+|+.+++|++++..++++++++|||||.+++++...
T Consensus 188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 89999999999999999999999999999999999987643
No 45
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=1.8e-15 Score=138.56 Aligned_cols=103 Identities=21% Similarity=0.330 Sum_probs=90.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+.....+++||+|+++.++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4569999999999999999986 78999999999999999999998888 89999999877555578999999999988
Q ss_pred h--hhHHHHHHHHHHhcccCceEEEEec
Q 018346 209 M--KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 209 ~--~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+ ++...+++++.++|+|||++++..+
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7 3678899999999999999776543
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.68 E-value=1.3e-17 Score=127.90 Aligned_cols=96 Identities=24% Similarity=0.394 Sum_probs=68.1
Q ss_pred EEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cccCccEEEEcccccchh
Q 018346 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIEMFEHMK 210 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~Ii~~~~~~~~~ 210 (357)
||+|||+|.++..+++.+|..+++|+|+|+.+++.++++....+..+......+..+.. ..++||+|++..+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999999989999999999999999999888876545455554444422 125899999999999999
Q ss_pred hHHHHHHHHHHhcccCceE
Q 018346 211 NYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 211 ~~~~~l~~~~~~LkpgG~l 229 (357)
+...+++++.++|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.67 E-value=8e-16 Score=139.98 Aligned_cols=110 Identities=21% Similarity=0.264 Sum_probs=97.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI 203 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~ 203 (357)
.+.++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.|+++....+.++++++.+|+.+++.+ ++||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 45688999999999999888777664 4568999999999999999999888888999999999887654 689999999
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.++++.++...+++++.++|||||++++....
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 99999999999999999999999999997654
No 48
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.67 E-value=1e-15 Score=141.79 Aligned_cols=116 Identities=20% Similarity=0.246 Sum_probs=95.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~f 197 (357)
..+...++..++.+|||||||+|.++..++...+ ..|+|+|+|+.++..++......+. .++.++.+|+.+++..++|
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3445555545678999999999999999998853 4699999999998765544333322 3799999999887766789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|+|..+++|..++..+++++.+.|+|||.+++++..
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 99999999999999999999999999999999998654
No 49
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.67 E-value=2.7e-16 Score=121.03 Aligned_cols=94 Identities=19% Similarity=0.434 Sum_probs=79.7
Q ss_pred EEEECCcccHHHHHHHHHC---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEc-cccc
Q 018346 133 VLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI-EMFE 207 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~-~~~~ 207 (357)
|||+|||+|..+..+++.+ |..+++|+|+|+++++.++++....+. +++++++|+.+++.. ++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999886 447999999999999999999988777 899999999987654 789999995 4588
Q ss_pred ch--hhHHHHHHHHHHhcccCc
Q 018346 208 HM--KNYQNLLKKISKWMKEDT 227 (357)
Q Consensus 208 ~~--~~~~~~l~~~~~~LkpgG 227 (357)
|+ +....+++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 88 457889999999999998
No 50
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.66 E-value=6.5e-16 Score=142.75 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=95.6
Q ss_pred HHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 121 YCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 121 l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
+++...+ .++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.|+++... .+++++.+|+.+.+++ ++||
T Consensus 104 ~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFD 180 (340)
T PLN02490 104 ALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYAD 180 (340)
T ss_pred HHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCcee
Confidence 4444444 357899999999999999999887778999999999999999887642 3788999999887655 6899
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|+++.+++++++...+++++.++|||||.+++..+.
T Consensus 181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999999999999999999999999999886543
No 51
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.2e-15 Score=134.34 Aligned_cols=131 Identities=24% Similarity=0.278 Sum_probs=104.9
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 97 KYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 97 ~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
.-.++.|+.+.-.. ..+ .+++.++...+.+|||+|||.|.+++.+++..|..+++.+|+|..+++.|++|+..+
T Consensus 132 ~t~pGVFS~~~lD~--GS~----lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 132 KTLPGVFSRDKLDK--GSR----LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred EeCCCCCcCCCcCh--HHH----HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 34568888654333 322 345555665566999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCccccCccEEEEcccccchh-h----HHHHHHHHHHhcccCceEEEEec
Q 018346 177 ELQNVEIIVADISTFEMEASYDRIYSIEMFEHMK-N----YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 177 ~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~-~----~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++++..+...|..+.. .++||+|+||+|+|.-. - -.+++....++|++||.|.+..-
T Consensus 206 ~~~~~~v~~s~~~~~v-~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 206 GVENTEVWASNLYEPV-EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCCccEEEEecccccc-cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 8866567777777633 35899999999998542 2 34799999999999999999765
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.66 E-value=3e-15 Score=128.55 Aligned_cols=112 Identities=19% Similarity=0.262 Sum_probs=94.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccE
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 199 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 199 (357)
.++..+.+.++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.+++++...++.+++++.+|... ..+++||+
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~ 100 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADA 100 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCE
Confidence 34455666788999999999999999999988889999999999999999999988877789999998753 23467999
Q ss_pred EEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 200 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|++.....+ ...+++.+.+.|+|||.+++....
T Consensus 101 v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 101 IFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EEECCCccC---HHHHHHHHHHhcCCCeEEEEEEec
Confidence 999876543 467889999999999999886543
No 53
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.66 E-value=3.2e-15 Score=139.22 Aligned_cols=105 Identities=22% Similarity=0.235 Sum_probs=91.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
....+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++++.+++ ..+++..|.... .+++||+|+||+++|
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~fDlIvsNPPFH 272 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGRFDMIISNPPFH 272 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCCccEEEECCCcc
Confidence 344589999999999999999998888999999999999999999999887 567788887653 247899999999998
Q ss_pred ch-----hhHHHHHHHHHHhcccCceEEEEec
Q 018346 208 HM-----KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 208 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. .....+++.+.++|||||.+++...
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 63 4568899999999999999998654
No 54
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.65 E-value=1.6e-15 Score=135.02 Aligned_cols=106 Identities=23% Similarity=0.349 Sum_probs=93.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
.+.+|||+|||+|..+..+++.+|..+++++|+|+.++..++++.. +++.++.+|+.+.+++ ++||+|+++.+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 4579999999999999999999888899999999999988887654 2788999999887644 7899999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+..++..+++++.++|+|||.+++..+....
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 9999999999999999999999998775543
No 55
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.65 E-value=1.9e-15 Score=134.92 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=93.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|..+..+++.+ |+++++|+|+|+.+++.|++++...+. .+++++++|+.+.++ ..+|+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence 467899999999999999999874 689999999999999999999887654 379999999988765 3689999999
Q ss_pred cccchh--hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++++++ +...+++++.++|+|||.+++..+..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 999984 46789999999999999999986543
No 56
>PRK08317 hypothetical protein; Provisional
Probab=99.65 E-value=3.2e-15 Score=133.09 Aligned_cols=116 Identities=23% Similarity=0.342 Sum_probs=100.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 196 (357)
+.+++...+.++.+|||+|||+|..+..++..+ |..+++|+|+|+.+++.++++.... ..++++...|+...+.. ++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-GPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-CCceEEEecccccCCCCCCC
Confidence 345566777888999999999999999999887 6789999999999999998873322 24899999998876544 78
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
||+|++..+++++.++..+++++.++|||||.+++..+.
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 999999999999999999999999999999999998764
No 57
>PRK06922 hypothetical protein; Provisional
Probab=99.65 E-value=1.1e-14 Score=142.65 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=92.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cc-cCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.+++.|+++....+. ++.++++|..+++ ++ ++||+|+++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEEch
Confidence 367899999999999999999988999999999999999999988766554 7889999988765 33 7899999999
Q ss_pred cccch-------------hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 205 MFEHM-------------KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 205 ~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++|++ .+...+++++.++|||||.+++....
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 98865 35678999999999999999997653
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.64 E-value=2.5e-15 Score=131.81 Aligned_cols=113 Identities=27% Similarity=0.281 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
....+++.+.+.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++...++++++++.+|..+....
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 445566667788899999999999999999998853 467999999999999999999999888999999998764332
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+||+|++..+..++ .+.+.+.|+|||++++....
T Consensus 145 ~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 145 APYDRIYVTAAGPKI------PEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEEcC
Confidence 689999998776544 34577899999999886543
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.64 E-value=2e-15 Score=131.02 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=91.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc-CCCc--c-ccCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STFE--M-EASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~~~--~-~~~fD~Ii~~~ 204 (357)
++.+|||+|||+|..+..+++..|+.+|+|+|+|+.+++.|++++...+.+++.++++|+ ..++ . +++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999888889999999999999999999888877899999998 5543 3 36799999986
Q ss_pred cccchh--------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..+.. ....+++++.++|||||.+++.+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 543321 14678999999999999999976543
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.64 E-value=3.7e-15 Score=127.01 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=89.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++...+. +++++.+|+.+.. .++||+|+++++++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPYL 93 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCCC
Confidence 356799999999999999999875 3999999999999999999988876 7899999987644 36899999999986
Q ss_pred chhh---------------------HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 208 HMKN---------------------YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 208 ~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+.++ ...+++++.++|+|||.+++...+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 5532 45689999999999999999776543
No 61
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=4.5e-15 Score=129.15 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 194 (357)
....+++.+...++.+|||+|||+|..+..+++..+ +.+|+++|+++++++.|++++...+.. +++++.+|..+....
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 345566667777889999999999999999998763 569999999999999999999988874 699999998764333
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+||+|+++.++++++ +++.+.|+|||++++...
T Consensus 140 ~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 6899999998887654 467889999999988654
No 62
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.63 E-value=2e-15 Score=125.96 Aligned_cols=99 Identities=28% Similarity=0.437 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~Ii~~~~ 205 (357)
..++.+|||+|||.|.++..+++. +.+|+|+|+|+.+++. .++.....+...... .++||+|+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 457889999999999999999776 5699999999998876 144445544443322 378999999999
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++|++++..+++.+.++|||||.+++.++...
T Consensus 88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999999999999999998764
No 63
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.62 E-value=2.7e-15 Score=131.19 Aligned_cols=116 Identities=24% Similarity=0.354 Sum_probs=99.0
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc---cCcc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYD 198 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD 198 (357)
.........+|||+|||+|.+++.++++.+.+++++||+++++.+.|+++.+.+++. +|+++++|+.++... .+||
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 344455578999999999999999999987799999999999999999999998884 999999999986533 5699
Q ss_pred EEEEcccccch------------------hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 199 RIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 199 ~Ii~~~~~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+|+||+|+... -+.+.+++.+.++|||||.+.+..+....
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl 175 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERL 175 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHH
Confidence 99999998432 23688999999999999999998775543
No 64
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.61 E-value=2.4e-14 Score=118.98 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=102.0
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
..+..+.+.++.+++|||||+|.+++.++...|..+|+++|-++++++..++|+++.|.+|+.++.+|+.+.... .++|
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 356778889999999999999999999998889999999999999999999999999999999999999875333 4799
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.|+.... . +...+++.+...|||||++++...+.++
T Consensus 105 aiFIGGg-~---~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 105 AIFIGGG-G---NIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred EEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 9999887 3 5688999999999999999998776544
No 65
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.61 E-value=3.4e-15 Score=117.98 Aligned_cols=104 Identities=23% Similarity=0.380 Sum_probs=88.8
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc--c-ccCccEEEEccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--M-EASYDRIYSIEM 205 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~-~~~fD~Ii~~~~ 205 (357)
|.+|||+|||+|.++..+++.. ..+++|+|+++.+++.++.++...+. ++++++++|+.+.. . .++||+|++|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999996 58999999999999999999999887 48999999998764 2 278999999999
Q ss_pred ccch--------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 206 FEHM--------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 206 ~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+... .....+++.+.++|+|||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9753 2357889999999999999998765
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.61 E-value=3.9e-15 Score=128.47 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=91.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cc-cCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~fD~Ii~~~ 204 (357)
+..+|||||||+|.++..+++.+|+..|+|+|+|+.+++.|++++...+++|++++++|+.+++ .+ +++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999999999999999999999999999999888889999999997643 22 5799999987
Q ss_pred cccchhh--------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFEHMKN--------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..+... ...+++.+.++|||||.+++.+...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 6544321 2578999999999999999976543
No 67
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.61 E-value=1.5e-14 Score=125.41 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe
Q 018346 107 SKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 186 (357)
Q Consensus 107 ~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~ 186 (357)
+..+.......+...+..+ .++.+|||+|||+|..+..+++..|+.+++|+|+|+.+++.|+++. +++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~ 95 (204)
T TIGR03587 23 RQSLVAAKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQG 95 (204)
T ss_pred cHHHHHHHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEe
Confidence 3444444445555555443 4677999999999999999998878899999999999999998764 25778889
Q ss_pred ccCCCccc-cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEec
Q 018346 187 DISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 187 d~~~~~~~-~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+.+ +.+ ++||+|+++.+++|++ +..++++++.+++ ++.+++...
T Consensus 96 d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 96 SLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred eccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 9887 444 7899999999999983 4678888888887 456666554
No 68
>PRK05785 hypothetical protein; Provisional
Probab=99.61 E-value=2.1e-14 Score=126.64 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=79.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
++.+|||+|||+|.++..+++.+ +.+|+|+|+|++|++.|+++ ..++++|+.+++++ ++||+|+++.+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhh
Confidence 46799999999999999999886 57999999999999998763 23578899888766 7899999999999
Q ss_pred chhhHHHHHHHHHHhcccC
Q 018346 208 HMKNYQNLLKKISKWMKED 226 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~Lkpg 226 (357)
+++++...++++.++|||.
T Consensus 122 ~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999993
No 69
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.60 E-value=1.8e-14 Score=125.99 Aligned_cols=113 Identities=27% Similarity=0.346 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
.+...+++.+.+.++.+|||||||+|..+..+++.. ++.+|+++|+++++++.+++++...+..+++++.+|......+
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 355567777788899999999999999999998875 3479999999999999999999988888899999998764333
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+||+|++......+ .+.+.+.|||||++++...
T Consensus 143 ~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 143 NAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEEc
Confidence 789999998776544 2456778999999988643
No 70
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.60 E-value=2.4e-14 Score=127.51 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=99.6
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~f 197 (357)
++..+...++.+|||+|||+|..+..++..+| ..+++++|+|+.+++.+++++...+. .++.++.+|+.+.+.+ ++|
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 122 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSF 122 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCc
Confidence 44445555778999999999999999999876 58999999999999999998876544 3789999999876544 689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|+++.+++++++...+++.+.++|+|||.+++.....
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 999999999999999999999999999999998876644
No 71
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.60 E-value=1.8e-14 Score=125.54 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=89.2
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc------------CCCCeEEEEeccC
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIVADIS 189 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~------------~~~~v~~~~~d~~ 189 (357)
+..+...++.+|||+|||.|..+.+||++ |..|+|+|+|+.+++.+.+..... .-.+|+++++|+.
T Consensus 27 ~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~ 104 (213)
T TIGR03840 27 WPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF 104 (213)
T ss_pred HHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence 33333346779999999999999999987 899999999999999764322100 0126999999999
Q ss_pred CCccc--cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 190 TFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 190 ~~~~~--~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.. ++||.|+...+++++ +....+++.+.++|||||++++.++..
T Consensus 105 ~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 105 ALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 87642 679999999999888 345678999999999999988877754
No 72
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.60 E-value=7.3e-15 Score=123.01 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=85.1
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcc
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
++...-.++||+|||.|.++..|+.+ ..+++++|+|+.+++.|+++.... ++|+|.+.|+.+..++++||+|+++.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES
T ss_pred cCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 45555679999999999999999988 469999999999999999988654 59999999998876668999999999
Q ss_pred cccchh---hHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEHMK---NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++++. +...+++.+...|+|||.+++.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999994 467789999999999999999765
No 73
>PRK14967 putative methyltransferase; Provisional
Probab=99.59 E-value=2.1e-14 Score=126.77 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=92.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 197 (357)
+...+....+.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...+. ++.++.+|+.+....++|
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~f 102 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPF 102 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCe
Confidence 3344455556678899999999999999998762 35999999999999999999988877 789999998764333689
Q ss_pred cEEEEcccccchh---------------------hHHHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMK---------------------NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~---------------------~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|++++++..-. ....+++.+.++|||||.+++...+
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999998764321 2466888999999999999986543
No 74
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.59 E-value=3.3e-14 Score=131.57 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=99.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~f 197 (357)
+.+++.....++.+|||||||+|.+++.+++++|+.+++++|. +.+++.+++++...++. +++++.+|+.+.+.+ .+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~ 216 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EA 216 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CC
Confidence 4455666677888999999999999999999999999999998 78999999999988874 899999999864443 47
Q ss_pred cEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|++..++|++.+ ...+++++.+.|+|||++++.++..
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 99999999988743 4679999999999999999987643
No 75
>PLN03075 nicotianamine synthase; Provisional
Probab=99.58 E-value=2.7e-14 Score=128.66 Aligned_cols=105 Identities=14% Similarity=0.189 Sum_probs=89.1
Q ss_pred CCCCEEEEECCcccHHHHH-H-HHHCCCcEEEEEcCCHHHHHHHHHHHHH-cCCC-CeEEEEeccCCCccc-cCccEEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLY-I-AQKYSNCKITGICNSKTQKEFIEEQCRV-LELQ-NVEIIVADISTFEME-ASYDRIYS 202 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~-l-a~~~p~~~v~~vD~s~~~l~~a~~~~~~-~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~ 202 (357)
.++.+|+|||||.|.++.. + +..+|+.+++++|+|+++++.|++.+.. .++. +++|..+|+.+.... +.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3678999999998855333 3 3456899999999999999999999964 6664 799999999876433 78999999
Q ss_pred cccccch--hhHHHHHHHHHHhcccCceEEEEe
Q 018346 203 IEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 203 ~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. +++++ +++.++++.+.+.|+|||.+++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 88888 789999999999999999999976
No 76
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.57 E-value=6.5e-14 Score=123.36 Aligned_cols=115 Identities=24% Similarity=0.354 Sum_probs=97.7
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
.+++.....++.+|||+|||+|..+..+++..|. .+++++|+++.+++.++++.. ..++++++.+|+.+.+.+ ++|
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~ 107 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSF 107 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcE
Confidence 3444444557889999999999999999998865 699999999999999988775 223789999999886654 689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|+++.++++++++..+++.+.+.|+|||++++.....
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 999999999999999999999999999999999876543
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.57 E-value=7.9e-14 Score=120.74 Aligned_cols=111 Identities=15% Similarity=0.319 Sum_probs=92.8
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc--ccC
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EAS 196 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~ 196 (357)
.+..+.+.++.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.+++++...++ +++.++.+|..+... .++
T Consensus 32 ~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 32 ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3456778889999999999999999998764 457999999999999999999998884 689999999876422 267
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
||+|++... ..++..+++.+.+.|+|||++++...
T Consensus 112 ~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 112 FDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 999999653 34667899999999999999988554
No 78
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.57 E-value=7.9e-14 Score=120.59 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=92.4
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-cc-ccCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM-EASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~-~~~f 197 (357)
.++..+...++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.+++++...+.++++++.+|+.+. .. ...+
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 355666777889999999999999999998777889999999999999999999988887899999998652 11 1346
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|.|+... ......+++.+.+.|+|||.+++..++.
T Consensus 111 d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 111 DRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 7776643 2346789999999999999999987643
No 79
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.56 E-value=3.1e-14 Score=118.66 Aligned_cols=105 Identities=17% Similarity=0.269 Sum_probs=90.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeE-EEEeccCCCc--cccCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIVADISTFE--MEASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~-~~~~d~~~~~--~~~~fD~Ii~~~~ 205 (357)
....|||+|||+|..-.+.-. -|+++|+++|+++.|-+.+.+.+++....++. |+.++.++++ ..+++|.|++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 345689999999998765542 26889999999999999999999887545777 9999999987 3489999999999
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++.+.++.+.++++.++|+|||++++...
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999999999999999999999988544
No 80
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.56 E-value=1.2e-13 Score=122.85 Aligned_cols=114 Identities=25% Similarity=0.349 Sum_probs=96.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEAS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~ 196 (357)
..+.......++.+|||||||+|.++..+++. +++++++|+|+.+++.++++....+. ++++...|+.+.+ ..++
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCC
Confidence 33444443457889999999999999999876 67999999999999999998877666 6888888887654 2378
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
||+|++..++++.++...+++.+.+.|+|||.+++..+.
T Consensus 115 fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 115 FDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 999999999999999999999999999999999988664
No 81
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.56 E-value=7.7e-14 Score=130.20 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=97.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
.++......++.+|||+|||+|.+++.++.. +.+++|+|+|+.++..+++|++..+++++.+..+|+.+++.. ++||
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D 250 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVD 250 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCC
Confidence 3445556778899999999999999887764 789999999999999999999998887789999999987654 7899
Q ss_pred EEEEcccccch---------hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 199 RIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 199 ~Ii~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|++++|+... ..+..+++.+.++|+|||++++..++..
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 99999987431 2257899999999999999999877543
No 82
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.54 E-value=9.8e-14 Score=121.53 Aligned_cols=110 Identities=22% Similarity=0.206 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
....++..+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++++..+++++++..+|..+.... +
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 33455666777788999999999999999888773 58999999999999999999998887899999998663223 6
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+||+|++..+.+++ .+.+.+.|+|||.+++...
T Consensus 144 ~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 89999998876554 3457789999999998766
No 83
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.54 E-value=9e-14 Score=129.77 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=96.1
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC--cc-ccCcc
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EM-EASYD 198 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~--~~-~~~fD 198 (357)
++......+..+||||||+|.++..+|...|+..++|+|+++.+++.|.+++...+++|+.++++|+..+ .. ++++|
T Consensus 115 ~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 115 LDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred HHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCcee
Confidence 3334444567999999999999999999999999999999999999999999999998999999998653 22 37899
Q ss_pred EEEEcccccchhh------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHMKN------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.|+++.+..+... ...+++.+.++|+|||.+.+.+-..
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9999877654422 2578999999999999999976654
No 84
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.53 E-value=2.2e-14 Score=119.90 Aligned_cols=152 Identities=17% Similarity=0.268 Sum_probs=114.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cc-cCccEEEEc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSI 203 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~fD~Ii~~ 203 (357)
+.++.+|||+|||.|.+...|.+.- +++.+|+|++++.+..+.++ .+.++++|+.+-. ++ ++||.||++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 3588999999999999999998863 89999999999987666553 5678999998732 33 899999999
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhc-ccCCCCCCCHHHHHhhcCCcEEEEeEE
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY-FFTGGTMPSANLLLYFQDDVSVVDHWL 282 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~w~ 282 (357)
.+++++.++..+++++.++ |...+++.|+. ..|-.+. +.-.|.+|.... ....|.
T Consensus 83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF------------g~W~~R~~l~~~GrmPvt~~---------lPy~WY 138 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF------------GHWRNRLQLLLRGRMPVTKA---------LPYEWY 138 (193)
T ss_pred hHHHhHhHHHHHHHHHHHh---cCeEEEEecCh------------HHHHHHHHHHhcCCCCCCCC---------CCCccc
Confidence 9999999999999998766 66777766643 3343333 233666776442 244677
Q ss_pred ecCccHHHHHHHHHHHHHhcHHHHHHHH
Q 018346 283 VNGKHYAQTSEEWLKRMDNNLASIKPIM 310 (357)
Q Consensus 283 ~~g~~y~~tl~~w~~~l~~~~~~~~~~~ 310 (357)
++.+-..-|++++.+...+.+.+|.+..
T Consensus 139 dTPNih~~Ti~DFe~lc~~~~i~I~~~~ 166 (193)
T PF07021_consen 139 DTPNIHLCTIKDFEDLCRELGIRIEERV 166 (193)
T ss_pred CCCCcccccHHHHHHHHHHCCCEEEEEE
Confidence 7665445788888888888888877653
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.53 E-value=1.6e-13 Score=117.76 Aligned_cols=106 Identities=19% Similarity=0.297 Sum_probs=88.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC--eEEEEeccCCCccccCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
.++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...+..+ +.++.+|+.+.....+||+|+++++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 57789999999999999999987 7899999999999999999998877743 8999999876433357999999987
Q ss_pred ccc---------------------hhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 206 FEH---------------------MKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 206 ~~~---------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+.. ......+++++.++|||||.+++..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 643 122466899999999999999887653
No 86
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.53 E-value=2e-13 Score=120.23 Aligned_cols=112 Identities=21% Similarity=0.353 Sum_probs=91.2
Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc
Q 018346 116 AMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 192 (357)
Q Consensus 116 ~~l~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~ 192 (357)
.+...+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++....+. +++.|.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence 34444555554 456889999999999999999876 67999999999999999999887765 48999999998765
Q ss_pred cccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEE
Q 018346 193 MEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
++||+|++..+++++ ++...+++++.+.+++++.+.+
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 789999999998877 3467789999998887655443
No 87
>PRK04266 fibrillarin; Provisional
Probab=99.52 E-value=3.7e-13 Score=118.29 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=86.1
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC----ccccCcc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EMEASYD 198 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD 198 (357)
+.+++.++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.++++.. +|+.++.+|.... +..++||
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCC
Confidence 457788999999999999999999999876569999999999999887776653 4899999998752 1235799
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|++.... ......+++++.++|||||.+++..+.
T Consensus 144 ~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 144 VIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred EEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99975331 112245689999999999999997553
No 88
>PLN02672 methionine S-methyltransferase
Probab=99.52 E-value=4.1e-14 Score=146.77 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=110.3
Q ss_pred hhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCC--CCCCEEEEECCcccHHHHHHHHHCCCcE
Q 018346 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCK 155 (357)
Q Consensus 78 ~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~p~~~ 155 (357)
+.||+....+-+.+++|+ ++++.+.+. +...+. -++.+|||+|||+|.+++.+++.+|..+
T Consensus 82 ~~F~~l~~~V~p~VLIPR---------peTE~lve~--------L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~ 144 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPE---------DWSFTFYEG--------LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSK 144 (1082)
T ss_pred EEecCCceeeCCCcccCc---------hhHHHHHHH--------HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCE
Confidence 688888888888888887 555555443 111111 1356899999999999999999988889
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCC----------------CCeEEEEeccCCCccc--cCccEEEEcccccc---------
Q 018346 156 ITGICNSKTQKEFIEEQCRVLEL----------------QNVEIIVADISTFEME--ASYDRIYSIEMFEH--------- 208 (357)
Q Consensus 156 v~~vD~s~~~l~~a~~~~~~~~~----------------~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~~--------- 208 (357)
|+|+|+|+.+++.|++|+..+++ ++++|+++|+.+.... .+||+||||+++-.
T Consensus 145 v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~ 224 (1082)
T PLN02672 145 VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSK 224 (1082)
T ss_pred EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcCh
Confidence 99999999999999999987542 3799999999874322 26999999998621
Q ss_pred -----------------------------hhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 209 -----------------------------MKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 209 -----------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+..+++++..+.++|+|||.+++++-...
T Consensus 225 eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 225 LVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred hhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 01147788899999999999999876543
No 89
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.52 E-value=1.7e-13 Score=119.84 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=86.4
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH------------cCCCCeEEEEeccCCCc
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV------------LELQNVEIIVADISTFE 192 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~------------~~~~~v~~~~~d~~~~~ 192 (357)
+...++.+|||+|||.|..+.+||++ |.+|+|+|+|+.+++.+...... ....+|++.++|+.++.
T Consensus 33 ~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 33 LALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred hCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 34456789999999999999999987 89999999999999976432110 01137899999999875
Q ss_pred cc--cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 193 ME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 193 ~~--~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.. ..||.|+...+++++ ....++++.+.++|+|||++++.+..
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 43 679999999999888 34678999999999999986665443
No 90
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.52 E-value=7.4e-13 Score=117.40 Aligned_cols=98 Identities=22% Similarity=0.384 Sum_probs=80.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. +++.+..+|+... .++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcch
Confidence 356789999999999999999987 56899999999999999999887776 4799999995432 367999999999
Q ss_pred ccchh--hHHHHHHHHHHhcccCce
Q 018346 206 FEHMK--NYQNLLKKISKWMKEDTL 228 (357)
Q Consensus 206 ~~~~~--~~~~~l~~~~~~LkpgG~ 228 (357)
++|++ ....+++.+.+.+++++.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 98864 556788888887654443
No 91
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4e-13 Score=114.17 Aligned_cols=110 Identities=22% Similarity=0.218 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-cccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~ 195 (357)
+...+++.+.+.++.+|||||||+|..+..+++. ..+|+.+|..++..+.|++|+...|+.||.++++|...- +...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 5556788888999999999999999999999988 459999999999999999999999998899999998763 3337
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+||.|+.......+| +.+.+.|||||++++-.-
T Consensus 138 PyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 899999998887665 336678999999998665
No 92
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.50 E-value=2.1e-13 Score=124.01 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=80.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCC---cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI 203 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~ 203 (357)
.++.+|||+|||+|.++..+++..|. ..++|+|+|+.+++.|+++. +++.+..+|+.+++++ ++||+|++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEe
Confidence 34578999999999999999987653 47999999999999987652 3789999999987765 789999986
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
.. ...++++.++|||||.+++..++..
T Consensus 159 ~~-------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 159 YA-------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred cC-------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 54 2346789999999999999877653
No 93
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.50 E-value=8.6e-13 Score=117.72 Aligned_cols=186 Identities=17% Similarity=0.167 Sum_probs=134.6
Q ss_pred cCCCCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhccCCccccchhhhhhhcCCChHHHHHhhcCCCCcccc
Q 018346 22 RNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCC 101 (357)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~ 101 (357)
.|+..+...+.++..++..++.........+....+. .. ....+.+++. ++...+
T Consensus 15 ~Gi~~~~~k~~~v~~Rl~~~~~~~~~~~~~~y~~~l~-------~~-----------------~~e~~~~l~~-ltin~T 69 (268)
T COG1352 15 TGIDFDNYKRTLVYRRLSRRLRKLGLKNFEEYLNLLE-------SD-----------------SEELQAFLDA-LTINVT 69 (268)
T ss_pred cCcCchhhhHHHHHHHHHHHHHHhCcccHHHHHHHHh-------CC-----------------HHHHHHHHHH-hhhccc
Confidence 3667666788888888888887655544444433332 11 1223333333 445556
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHHCC-----CcEEEEEcCCHHHHHHHHHH
Q 018346 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKITGICNSKTQKEFIEEQ 172 (357)
Q Consensus 102 ~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~p-----~~~v~~vD~s~~~l~~a~~~ 172 (357)
.|.++.+.+.......++.++..... ...+|+.+||++|. +++.+.+.+| ..+|+|+|+|..+++.|+.-
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 77778888888888888877765433 57899999999995 6666666664 47999999999999998763
Q ss_pred HHH-----cC-----------------------C-CCeEEEEeccCCCc-cccCccEEEEcccccch--hhHHHHHHHHH
Q 018346 173 CRV-----LE-----------------------L-QNVEIIVADISTFE-MEASYDRIYSIEMFEHM--KNYQNLLKKIS 220 (357)
Q Consensus 173 ~~~-----~~-----------------------~-~~v~~~~~d~~~~~-~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~ 220 (357)
.-. .+ + ..|.|...|+.+.+ ..+.||+|+|.+++.++ +...++++.++
T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268)
T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHH
Confidence 211 11 1 25899999998765 55789999999999999 55788999999
Q ss_pred HhcccCceEEEEe
Q 018346 221 KWMKEDTLLFVHH 233 (357)
Q Consensus 221 ~~LkpgG~l~~~~ 233 (357)
..|+|||.|++-.
T Consensus 229 ~~L~~gG~LflG~ 241 (268)
T COG1352 229 DSLKPGGLLFLGH 241 (268)
T ss_pred HHhCCCCEEEEcc
Confidence 9999999999943
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.49 E-value=7.1e-13 Score=121.31 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=83.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++++..+++. ++.+...|.... ..++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH
Confidence 367899999999999999888653 469999999999999999999988874 566776664332 23689999998764
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+ ....++..+.++|||||.++++.+.
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 3 3467899999999999999997653
No 95
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.49 E-value=4.6e-13 Score=118.24 Aligned_cols=105 Identities=27% Similarity=0.419 Sum_probs=92.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~ 206 (357)
.+.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+..++++...|+.+.+.. ++||+|+++.++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999999998876 567999999999999999988877664689999998765433 689999999999
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+++.++..+++.+.+.|+|||.+++..+.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99999999999999999999999987654
No 96
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=5e-13 Score=120.08 Aligned_cols=102 Identities=25% Similarity=0.282 Sum_probs=80.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEEeccCCCccccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
++.+|||+|||||.+++..++.. ..+|+|+|++|.+++.|++|+..++++. ++....+....+..++||+|++|-.-+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~ 240 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE 240 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH
Confidence 78999999999999999999874 3579999999999999999999998853 333333333333226899999986322
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEec
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
-...+...+.+.|||||+++++-+
T Consensus 241 ---vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 241 ---VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ---HHHHHHHHHHHHcCCCceEEEEee
Confidence 346788899999999999999654
No 97
>PRK06202 hypothetical protein; Provisional
Probab=99.48 E-value=5.3e-13 Score=118.57 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=82.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHH----CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYS 202 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~ 202 (357)
.++.+|||+|||+|.++..+++. .|+.+|+|+|+|+.+++.|+++.... ++++...+...++.. ++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence 46789999999999999988753 34579999999999999998875433 456666665554433 78999999
Q ss_pred cccccchhh--HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 203 IEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 203 ~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+.+++|+++ ...+++++.++++ |.+++......
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999999966 4579999999998 56666655443
No 98
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.48 E-value=6.8e-13 Score=118.32 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=92.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~f 197 (357)
+.+...+..-.|++|||||||+|..+..++.+. ...|+|+|.++....+.+....-.|.+ .+.++...+++++..+.|
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~F 183 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAF 183 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCc
Confidence 344444434468999999999999999999884 357999999998776654433333433 334443456666545789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
|+|+|.++++|..++-..+..+++.|+|||.+++++......
T Consensus 184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 999999999999999999999999999999999998876543
No 99
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.48 E-value=4.5e-13 Score=116.04 Aligned_cols=114 Identities=22% Similarity=0.233 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
.+...+++.+.+.++.+|||||||+|..+..++... +...|+++|+++...+.|++++...+..||.++.+|.......
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 456678888889999999999999999999999875 4458999999999999999999999988999999998764323
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+||.|++......++ ..+.+.|++||++++-.-.
T Consensus 139 ~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEESS
T ss_pred CCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEcc
Confidence 7899999998876553 3366789999999986554
No 100
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=2.9e-13 Score=132.79 Aligned_cols=112 Identities=21% Similarity=0.366 Sum_probs=91.0
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC--Cccc-cC
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEME-AS 196 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~--~~~~-~~ 196 (357)
.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.+++... ..++++++++|+.. .+++ ++
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCC
Confidence 4455555556789999999999999999987 5699999999999987755321 22489999999864 3333 68
Q ss_pred ccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEecc
Q 018346 197 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
||+|+++.+++++++ ...+++++.++|||||.+++...+
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999999999999965 678999999999999999997654
No 101
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.47 E-value=9.9e-13 Score=118.87 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=123.9
Q ss_pred cCCCCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhccCCccccchhhhhhhcCCChHHHHHhhcCCCCcccc
Q 018346 22 RNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCC 101 (357)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~ 101 (357)
.|+......+.++...+..++....-+++.+.+..+. . +.+.+..+.+++ .+..+.+
T Consensus 38 ~Gi~~~~~k~~~l~~rl~~r~~~~g~~s~~~y~~~L~-------~---------------~~~~~e~~~li~-~ltineT 94 (287)
T PRK10611 38 AGIVLADHKREMVYNRLVRRLRSLGLNDFGQYLALLE-------S---------------NQNSAEWQAFIN-ALTTNLT 94 (287)
T ss_pred HCCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHh-------c---------------CCCHHHHHHHHH-HhhCCCC
Confidence 4777777777888888888887766656555544433 1 111122333322 2555567
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHHCC----CcEEEEEcCCHHHHHHHHHHH
Q 018346 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS----NCKITGICNSKTQKEFIEEQC 173 (357)
Q Consensus 102 ~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~p----~~~v~~vD~s~~~l~~a~~~~ 173 (357)
+|.++...+...... +... .+..+|+..||++|. +++.+.+..+ ..+|+|+|+|+.+++.|++..
T Consensus 95 ~FFRd~~~f~~L~~~-----~~~~--~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 95 AFFREAHHFPILAEH-----ARRR--SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CccCCcHHHHHHHHH-----HHhc--CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 788776666544322 1111 235899999999996 4444444332 368999999999999998752
Q ss_pred HH-----------------------cC-------C-CCeEEEEeccCCCcc--ccCccEEEEcccccch--hhHHHHHHH
Q 018346 174 RV-----------------------LE-------L-QNVEIIVADISTFEM--EASYDRIYSIEMFEHM--KNYQNLLKK 218 (357)
Q Consensus 174 ~~-----------------------~~-------~-~~v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~--~~~~~~l~~ 218 (357)
-. .+ + +.|+|.+.|+.+.++ .+.||+|+|.+++.|+ +...+++++
T Consensus 168 Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~ 247 (287)
T PRK10611 168 YRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRR 247 (287)
T ss_pred CCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHH
Confidence 00 01 1 368999999987433 3789999999999999 567889999
Q ss_pred HHHhcccCceEEEEe
Q 018346 219 ISKWMKEDTLLFVHH 233 (357)
Q Consensus 219 ~~~~LkpgG~l~~~~ 233 (357)
+.+.|+|||+|++..
T Consensus 248 l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 248 FVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHhCCCcEEEEeC
Confidence 999999999988854
No 102
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=9.2e-13 Score=114.35 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=102.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEAS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 196 (357)
..++..+++.++.+|+|.|+|||.++.+|+... |..+|+..|+-++..+.|++|++..++. +|++..+|+.+...++.
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 357778899999999999999999999999754 6689999999999999999999998886 59999999998655578
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
||+|+. .++++.++++.+.+.|||||.+++..|+.+.
T Consensus 164 vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 164 VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred cCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 999998 5668999999999999999999998887644
No 103
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.47 E-value=8.4e-13 Score=118.49 Aligned_cols=96 Identities=24% Similarity=0.264 Sum_probs=76.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++++..+++ +++.+..+| .+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcH
Confidence 467899999999999999877653 34699999999999999999998876 344433332 269999998643
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+ ....+++++.++|||||.++++.+
T Consensus 190 ~---~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 N---PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred H---HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3 346788999999999999999754
No 104
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.46 E-value=4.1e-13 Score=109.76 Aligned_cols=123 Identities=16% Similarity=0.261 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcC---CCCC-CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEEecc
Q 018346 114 EKAMLELYCERSR---LEDG-HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADI 188 (357)
Q Consensus 114 ~~~~l~~l~~~~~---~~~~-~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~ 188 (357)
+.++++.+.+... +.+. .+|||+|||.|.+...|++..-....+|+|.|+.+++.|+..++..+.++ |+|.+.|+
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 3445555555443 3333 49999999999999999987423459999999999999999999988864 99999999
Q ss_pred CCCccc-cCccEEEEcccccch---h-----hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 189 STFEME-ASYDRIYSIEMFEHM---K-----NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 189 ~~~~~~-~~fD~Ii~~~~~~~~---~-----~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+..+. ++||+|.--..+..+ + .+.-.+..+.+.|+|||+++|...+.
T Consensus 128 ~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 128 TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 985433 789999888777655 1 12446788899999999999876543
No 105
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.46 E-value=1.6e-12 Score=119.47 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=77.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CCCeEEEEeccCCCccccCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEMEASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~fD~Ii~~ 203 (357)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ ..+++|...|+.++ .++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 5789999999999999999986 7899999999999999999987642 23688999998654 3789999999
Q ss_pred ccccchhh--HHHHHHHHHHhcccCceEE
Q 018346 204 EMFEHMKN--YQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 204 ~~~~~~~~--~~~~l~~~~~~LkpgG~l~ 230 (357)
.+++|+++ ...+++.+.+ +.+||.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99988854 3456666664 45555543
No 106
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.46 E-value=7.6e-13 Score=115.29 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=81.5
Q ss_pred HHHHHcC-CCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----
Q 018346 120 LYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 192 (357)
Q Consensus 120 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----- 192 (357)
.+.++.. +.++.+|||+|||+|.++..+++.. +...|+|+|+++. .+..+++++++|+.+..
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i 109 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKAL 109 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHH
Confidence 3444444 4678899999999999999999886 4579999999882 12347899999998842
Q ss_pred ---c-ccCccEEEEcccccchhh-----------HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 193 ---M-EASYDRIYSIEMFEHMKN-----------YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 193 ---~-~~~fD~Ii~~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
. .++||+|+|+.+.+...+ ...+++.+.++|||||.+++.++...
T Consensus 110 ~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred HHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 2 267999999875544311 24689999999999999999776543
No 107
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=1.3e-12 Score=126.20 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=94.4
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---ccCc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASY 197 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~f 197 (357)
+...++..++.+|||+|||+|..+..+++..++.+|+++|+|+.+++.++++++..|+ +++++++|+.+.+. .++|
T Consensus 236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCC
Confidence 3445567789999999999999999999987667999999999999999999999888 58899999986532 2679
Q ss_pred cEEEEcccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|.|+++++.... .....+++.+.+.|||||.+++++.+.
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999988865321 113578999999999999999877543
No 108
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.46 E-value=4.6e-12 Score=116.72 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=101.3
Q ss_pred hhhcCC-ChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcE
Q 018346 78 EQHYEL-PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCK 155 (357)
Q Consensus 78 ~~~y~~-~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~ 155 (357)
.-+||. +.+.|+.+..-. .||. +..=.+........+++.+ .++.+|||+|||+|..+..|++.++ +.+
T Consensus 20 ~~~yd~~G~~lf~~i~~~p-----eYy~--tr~E~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~ 90 (301)
T TIGR03438 20 KYFYDARGSELFEQICELP-----EYYP--TRTEAAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPAR 90 (301)
T ss_pred hhcccchHHHHHHHHHCCC-----cccc--HHHHHHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCe
Confidence 456654 456677775543 2222 1110111122223333333 3668999999999999999998875 579
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCC-ccccCc-----cEEEEcccccch--hhHHHHHHHHHHhcccC
Q 018346 156 ITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-EMEASY-----DRIYSIEMFEHM--KNYQNLLKKISKWMKED 226 (357)
Q Consensus 156 v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~f-----D~Ii~~~~~~~~--~~~~~~l~~~~~~Lkpg 226 (357)
|+++|+|++|++.+++++..... .+|.++++|+.+. +....+ .++++..+++++ ++...++++++++|+||
T Consensus 91 ~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 91 YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998765431 1678899999863 222222 344455567766 45678999999999999
Q ss_pred ceEEEEeccCC
Q 018346 227 TLLFVHHFCHK 237 (357)
Q Consensus 227 G~l~~~~~~~~ 237 (357)
|.+++......
T Consensus 171 G~~lig~d~~~ 181 (301)
T TIGR03438 171 GGLLIGVDLVK 181 (301)
T ss_pred CEEEEeccCCC
Confidence 99998655443
No 109
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=1.3e-12 Score=120.45 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
++..+++.+.+.++.+|||+|||+|.++..+++..+ ...|+++|+++++++.|+++++..+.+++.++.+|..+....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 444566667777889999999999999999998764 357999999999999999999998888899999998765433
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+||+|++......+ ...+.+.|+|||.+++...
T Consensus 148 ~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 148 APYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred CCccEEEECCchHHh------HHHHHHhcCCCCEEEEEeC
Confidence 679999998655443 2346778999999888653
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=99.45 E-value=1.8e-12 Score=115.17 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=83.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
...+|||+|||+|.++..++.+.++.+|+++|+|+.+++.++++. ++++++++|+.+.....+||+|++|+++.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence 456999999999999999988766689999999999999998763 378999999988654478999999999987
Q ss_pred hhh--------------------HHHHHHHHHHhcccCceEEEEecc
Q 018346 209 MKN--------------------YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 209 ~~~--------------------~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+. ..+++.....+|+|+|.+++...+
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 511 245677778899999977776443
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.45 E-value=7.4e-13 Score=120.17 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=77.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||||.+++..++.. ..+|+|+|++|.+++.|++|+..+++. ++.+ ....+.. ..+||+|++|-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~~-~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDLV-EGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCTC-CS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecccc-cccCCEEEECCCH
Confidence 467899999999999999999873 358999999999999999999999985 4433 2222222 3789999998655
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+ -...++..+.++|+|||.++++-+
T Consensus 236 ~---vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 236 D---VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp H---HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred H---HHHHHHHHHHHhhCCCCEEEEccc
Confidence 4 346778889999999999999755
No 112
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=1.6e-12 Score=126.15 Aligned_cols=114 Identities=19% Similarity=0.271 Sum_probs=93.6
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCcc
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYD 198 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD 198 (357)
...+...++.+|||+|||+|..+..+++.. ++.+|+++|+|+.+++.+++++...|+++++++++|+.+.. .+++||
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 243 APALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 334566788999999999999999999876 56799999999999999999999999878999999998753 226899
Q ss_pred EEEEcccccch------h----------------hHHHHHHHHHHhcccCceEEEEecc
Q 018346 199 RIYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 199 ~Ii~~~~~~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|+++++.... + ....+++.+.++|||||.++.++.+
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99998764322 0 1246899999999999999876544
No 113
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.44 E-value=2e-12 Score=116.89 Aligned_cols=112 Identities=15% Similarity=0.088 Sum_probs=92.6
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYS 202 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~ 202 (357)
+...++.+|||+|||+|..+..++...+ ...|+++|+|+.+++.++++++..++.+|.++..|...++.. ++||.|++
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 4567889999999999999999998763 369999999999999999999999988899999998765433 57999999
Q ss_pred cccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 203 IEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.... ....++++.+.++|||||+++.++.+.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 8765332 123568999999999999998876543
No 114
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=1.5e-12 Score=125.36 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=94.9
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEE
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRI 200 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~I 200 (357)
.++..++.+|||+|||+|..+..++... ++.+|+++|+|+.+++.++++++..|+++++++++|...++ ..++||.|
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEE
Confidence 4566788999999999999999999876 45799999999999999999999999878999999988764 23679999
Q ss_pred EEcccccch------h----------------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.+.... + ...+++..+.+.|||||.++.++.+.
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 998766322 1 24678999999999999998887764
No 115
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=2.4e-12 Score=110.70 Aligned_cols=108 Identities=14% Similarity=0.243 Sum_probs=85.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--ccCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~Ii~~~~ 205 (357)
.++.+|||+|||+|.+++.++... ..+|+++|+++.+++.+++|++..++++++++++|+.+... ..+||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 356799999999999999765554 46999999999999999999999988789999999876321 246999999999
Q ss_pred ccchhhHHHHHHHHHH--hcccCceEEEEeccCC
Q 018346 206 FEHMKNYQNLLKKISK--WMKEDTLLFVHHFCHK 237 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~ 237 (357)
+.. .-...+++.+.. +|+|+|.++++.....
T Consensus 131 y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 131 FRK-GLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred CCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 642 223455565554 3799999999876543
No 116
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=2.7e-12 Score=124.59 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=93.8
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 201 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii 201 (357)
..+...++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.+++++...|+++|+++++|+...+..++||+|+
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl 323 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAIL 323 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEE
Confidence 345566789999999999999999988653 4699999999999999999999999878999999998765446899999
Q ss_pred Ecccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 202 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..+.... .....++..+.+.|||||++++++.+.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 87543211 123468999999999999999987655
No 117
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.41 E-value=1.6e-12 Score=126.06 Aligned_cols=131 Identities=18% Similarity=0.271 Sum_probs=100.1
Q ss_pred CCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH
Q 018346 95 YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 95 ~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
.+.++++.|...+... ...+++.+++.+...++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|+.
T Consensus 266 ~f~~~~~~F~q~n~~~---~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~ 340 (443)
T PRK13168 266 RLAFSPRDFIQVNAQV---NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENAR 340 (443)
T ss_pred EEEECCCCeEEcCHHH---HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHH
Confidence 3445555554322222 2346666777777778889999999999999999987 4799999999999999999999
Q ss_pred HcCCCCeEEEEeccCCCc----c-ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 175 VLELQNVEIIVADISTFE----M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 175 ~~~~~~v~~~~~d~~~~~----~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+++++++|+.+|+.+.. . .++||+|+++++..... ..++.+.+ ++|++.+++++.
T Consensus 341 ~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~---~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 341 RNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA---EVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred HcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH---HHHHHHHh-cCCCeEEEEEeC
Confidence 988888999999987531 2 25799999999987653 44555554 699999888764
No 118
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=3.3e-12 Score=123.50 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=94.3
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----c-cc
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EA 195 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~ 195 (357)
...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...|+++|+++++|....+ . .+
T Consensus 245 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 245 APLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred HHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccc
Confidence 344566788999999999999999999875 34699999999999999999999999988999999998754 2 26
Q ss_pred CccEEEEcccccch------hh----------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||.|+++.+.... ++ ..+++..+.+.|||||.++.++.+.
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 79999987653221 11 4678999999999999998876543
No 119
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.40 E-value=2.7e-12 Score=108.28 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=85.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++.+|+.+.+.+ .+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 45666677778889999999999999999987 67999999999999999988754 34899999999987655 469
Q ss_pred cEEEEcccccchhhHHHHHHHHHHh--cccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKW--MKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~--LkpgG~l~~~~~ 234 (357)
|.|+++.+++-. ..++..+.+. +.++|.++++..
T Consensus 79 d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 79 YKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEEHH
Confidence 999999998643 2344444432 447888877643
No 120
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.40 E-value=3.3e-12 Score=97.37 Aligned_cols=100 Identities=27% Similarity=0.453 Sum_probs=85.5
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--ccCccEEEEcccccc-
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEMFEH- 208 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~- 208 (357)
+|+|+|||.|..+..+++ .+..+++++|+++.++..+++.....+..++++...|..+... .++||+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999987 4578999999999999988864444444589999999988653 378999999999998
Q ss_pred hhhHHHHHHHHHHhcccCceEEEE
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 778899999999999999999875
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.40 E-value=4.6e-12 Score=122.28 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=92.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc---ccC
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EAS 196 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~---~~~ 196 (357)
+...+...++.+|||+|||+|..+..+++..++.+|+++|+|+.+++.++++++..|++ ++.+..+|....+. .++
T Consensus 230 ~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 230 VATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence 44456677889999999999999999998876689999999999999999999998885 33446677654432 267
Q ss_pred ccEEEEcccccc------hhh----------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEH------MKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~------~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||.|++..+... .++ ..+++..+.++|||||.++.++.+.
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999998764332 121 4679999999999999999987765
No 122
>PRK04457 spermidine synthase; Provisional
Probab=99.38 E-value=2.5e-12 Score=115.83 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=87.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc--ccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~fD~Ii~~~ 204 (357)
.++.+|||||||+|.++..+++..|+.+++++|+++++++.|++++...+. ++++++.+|..+... +++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456899999999999999999999999999999999999999998765443 489999999866421 26799999864
Q ss_pred ccc-chh---hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFE-HMK---NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~-~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.-. ..+ ....+++.+.+.|+|||++++.....
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 211 111 23689999999999999999965543
No 123
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=2.5e-11 Score=105.86 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=90.6
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH------------HcCCCCeEEEEeccCC
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR------------VLELQNVEIIVADIST 190 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~------------~~~~~~v~~~~~d~~~ 190 (357)
..+...++.+||+.|||.|..+.+|+.+ |.+|+|+|+|+.+++.+.+... .....+|++.++|+.+
T Consensus 37 ~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 37 SKLNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HhcCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 3344456789999999999999999998 8899999999999998755210 0111279999999999
Q ss_pred Cccc----cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 191 FEME----ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 191 ~~~~----~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++.. ++||+|+-...++++ +...+..+.+.++|+|||.+++.+...
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 8531 579999999999999 346778999999999999999887643
No 124
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.37 E-value=4.8e-12 Score=119.94 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=98.2
Q ss_pred CCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH
Q 018346 95 YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 95 ~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
.+.++++.|...+....+ .++..+.+.+...++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|++
T Consensus 202 ~~~~~~~~F~Q~n~~~~~---~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~ 276 (374)
T TIGR02085 202 PLVIRPQSFFQTNPKVAA---QLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQ 276 (374)
T ss_pred EEEECCCccccCCHHHHH---HHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHH
Confidence 455666666543333333 34444444443335679999999999999999965 6799999999999999999999
Q ss_pred HcCCCCeEEEEeccCCCcc--ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 175 VLELQNVEIIVADISTFEM--EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 175 ~~~~~~v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+++++++|+.+|+.+... ..+||+|+++++..++. ..+++.+. .++|++.+++++.
T Consensus 277 ~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~--~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 277 MLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGIG--KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred HcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCCc--HHHHHHHH-hcCCCeEEEEEeC
Confidence 9988889999999976432 14699999999987553 44555554 4799999888764
No 125
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.37 E-value=1.4e-11 Score=110.16 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=91.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCcc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 198 (357)
..+.......+..+|+|||+|+|.++..+++++|+.+++..|+ |..++.+++ .++|+++.+|+.+ +.+. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~~P~-~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-PLPV-AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-CCSS-ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-hhcc-cc
Confidence 4455566677778999999999999999999999999999999 888888877 3499999999984 4445 99
Q ss_pred EEEEcccccch--hhHHHHHHHHHHhcccC--ceEEEEeccCC
Q 018346 199 RIYSIEMFEHM--KNYQNLLKKISKWMKED--TLLFVHHFCHK 237 (357)
Q Consensus 199 ~Ii~~~~~~~~--~~~~~~l~~~~~~Lkpg--G~l~~~~~~~~ 237 (357)
+|+...++|++ ++...+++++++.|+|| |+|+|..+..+
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 99999999998 45678999999999999 99999776543
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=99.36 E-value=4.4e-12 Score=110.21 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=76.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
.+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|+++.. ++.++.+|+......++||+||+|+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccccCCccEEEECCC
Confidence 36799999999999999998864 35699999999999999997742 68899999986554568999999999
Q ss_pred ccch------------hhHHHHHHHHHHhcccCce
Q 018346 206 FEHM------------KNYQNLLKKISKWMKEDTL 228 (357)
Q Consensus 206 ~~~~------------~~~~~~l~~~~~~LkpgG~ 228 (357)
+... .....+++.+.++++||+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 8633 1245688888886666664
No 127
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.36 E-value=2.6e-12 Score=110.11 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=84.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHHC----C-CcEEEEEcCCHHHHHHHHH
Q 018346 101 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKY----S-NCKITGICNSKTQKEFIEE 171 (357)
Q Consensus 101 ~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~----p-~~~v~~vD~s~~~l~~a~~ 171 (357)
++|.++...+......++..+++.....+..+|+.+||++|. +++.+.+.. + ..+++|+|+|+.+++.|++
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp --TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 456677777777777777666655444467899999999996 444444421 1 3699999999999999987
Q ss_pred HH--------------HH-----cC--------C-CCeEEEEeccCC-CccccCccEEEEcccccch--hhHHHHHHHHH
Q 018346 172 QC--------------RV-----LE--------L-QNVEIIVADIST-FEMEASYDRIYSIEMFEHM--KNYQNLLKKIS 220 (357)
Q Consensus 172 ~~--------------~~-----~~--------~-~~v~~~~~d~~~-~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~ 220 (357)
-. .+ .+ + ++|+|...|+.+ .+..+.||+|+|.+++.++ +...++++.+.
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~ 162 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLH 162 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHG
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHH
Confidence 32 00 01 1 369999999998 3333889999999999999 45678999999
Q ss_pred HhcccCceEEEEe
Q 018346 221 KWMKEDTLLFVHH 233 (357)
Q Consensus 221 ~~LkpgG~l~~~~ 233 (357)
+.|+|||.|++..
T Consensus 163 ~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 163 RSLKPGGYLFLGH 175 (196)
T ss_dssp GGEEEEEEEEE-T
T ss_pred HHcCCCCEEEEec
Confidence 9999999999943
No 128
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.36 E-value=1.2e-11 Score=109.54 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 192 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~ 192 (357)
..++..++.. .++.+|||+|||+|..++.++...| +.+|+++|+++++++.|+++++..|+. +++++.+|+.+..
T Consensus 57 g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 3344444433 3578999999999999999998764 679999999999999999999999984 8999999987641
Q ss_pred c-------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 M-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 ~-------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. .++||+|++...- +.+..+++.+.++|+|||.+++..
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 1 2579999987542 456788999999999999988753
No 129
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.35 E-value=9e-12 Score=110.14 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=93.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc--
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-- 193 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~-- 193 (357)
+..++..+++.||.+|||.|+|+|.++.+|++.. |..+|+..|..++..+.|+++++..|++ +|++.+.|+.+..+
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4457788899999999999999999999999764 7889999999999999999999999995 89999999965332
Q ss_pred --ccCccEEEEcccccchhhHHHHHHHHHHhc-ccCceEEEEeccCCC
Q 018346 194 --EASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFCHKT 238 (357)
Q Consensus 194 --~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~ 238 (357)
+..+|.|+.. ++++...+..+.+.| +|||++++..|+.+-
T Consensus 109 ~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 109 ELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIEQ 151 (247)
T ss_dssp T-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred cccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHHH
Confidence 2579999984 557788899999999 999999998887643
No 130
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.34 E-value=1.1e-11 Score=115.08 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=87.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~ 194 (357)
+++.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++++++|+++|+.++.. .
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC
Confidence 4444444443335689999999999999999985 68999999999999999999999998889999999987532 2
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++||+|+++++-..+. ..+++.+ ..++|++.+++++..
T Consensus 239 ~~~D~Vv~dPPr~G~~--~~~~~~l-~~~~~~~ivyvsc~p 276 (315)
T PRK03522 239 EVPDLVLVNPPRRGIG--KELCDYL-SQMAPRFILYSSCNA 276 (315)
T ss_pred CCCeEEEECCCCCCcc--HHHHHHH-HHcCCCeEEEEECCc
Confidence 5799999999966542 2333333 346788877776543
No 131
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.34 E-value=1.4e-11 Score=105.70 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------c-cc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------M-EA 195 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--------~-~~ 195 (357)
.+.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+ ..+++.++++|+.+.. . .+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 44688999999999999999998876 45689999999864 1237888999987632 1 25
Q ss_pred CccEEEEcccc--------cch---hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMF--------EHM---KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~--------~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|+++.+. ++. .....++..+.++|+|||.+++..+..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 79999997542 111 224678999999999999999976543
No 132
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.34 E-value=8.2e-12 Score=118.53 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=86.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc-----ccCccEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRIY 201 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~fD~Ii 201 (357)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+..++++ +++++++|+.+... .++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999999877654 2459999999999999999999999874 79999999987421 24799999
Q ss_pred Ecccccch---------hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++++.-.- .++..++..+.++|+|||.++..+.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99986321 24667777889999999998876543
No 133
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.34 E-value=2.1e-11 Score=106.53 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=89.2
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-c-----------CCCCeEEEEec
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-L-----------ELQNVEIIVAD 187 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-~-----------~~~~v~~~~~d 187 (357)
..++.+...++.+||..|||.|.....|+++ |.+|+|+|+|+.+++.+.+.... . ...+|++.++|
T Consensus 28 ~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD 105 (218)
T PF05724_consen 28 EYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGD 105 (218)
T ss_dssp HHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcc
Confidence 3444455667789999999999999999998 88999999999999988443221 0 11368999999
Q ss_pred cCCCccc--cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 188 ISTFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 188 ~~~~~~~--~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+.+++.. ++||+|+=...++.+ +...+..+.+.++|+|||.+++.+..
T Consensus 106 fF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 106 FFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred cccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 9997654 689999999999888 45778999999999999996555543
No 134
>PTZ00146 fibrillarin; Provisional
Probab=99.33 E-value=1.7e-11 Score=110.12 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=81.5
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----cccCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~f 197 (357)
+.+.+.++.+|||+|||+|..+..++... +...|+++|+|+.+++...+.+... +||.++..|+.... +.+++
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCC
Confidence 34567889999999999999999999886 3468999999998665555444332 38899999986521 12579
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|+|++... ..++...++.++.++|||||.+++..
T Consensus 204 DvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 204 DVIFADVA--QPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEE
Confidence 99999874 23344556678999999999999953
No 135
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.33 E-value=9.7e-12 Score=107.35 Aligned_cols=96 Identities=21% Similarity=0.318 Sum_probs=76.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Cc-cc-cCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-ME-ASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~-~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|.++..+++.. +..++|+|+|+++++.++++ +++++.+|+.+ .+ .+ ++||+|+++.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 367899999999999999888664 67889999999998887542 57888899875 32 33 6899999999
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++|++++..+++++.+.++ .+++..+
T Consensus 84 ~l~~~~d~~~~l~e~~r~~~---~~ii~~p 110 (194)
T TIGR02081 84 TLQATRNPEEILDEMLRVGR---HAIVSFP 110 (194)
T ss_pred HhHcCcCHHHHHHHHHHhCC---eEEEEcC
Confidence 99999999999998877654 4455444
No 136
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.32 E-value=8.3e-12 Score=105.27 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCC--CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEE
Q 018346 108 KTLEDAEKAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 185 (357)
Q Consensus 108 ~~l~~~~~~~l~~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~ 185 (357)
..+...|..+....++.+.+++ +.-|||||||+|-.+..|... +...+|+|||+.|++.|.+.--+ -.++.
T Consensus 27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-----gdlil 99 (270)
T KOG1541|consen 27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-----GDLIL 99 (270)
T ss_pred ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-----cCeee
Confidence 3455556667777777777765 678999999999999888766 78899999999999999873222 24688
Q ss_pred eccCC-Cccc-cCccEEEEcccccch-----------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 186 ADIST-FEME-ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 186 ~d~~~-~~~~-~~fD~Ii~~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|+-+ +|+. ++||-+|+...++++ .-+..++..+..+|++|++.+++....
T Consensus 100 ~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 88865 4554 899999999988766 114557888999999999999876544
No 137
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.32 E-value=8.8e-12 Score=127.10 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=88.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc--ccCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM--EASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~--~~~fD~Ii~~~ 204 (357)
++.+|||+|||+|.+++.++... ..+|+++|+|+.+++.|++|+..++++ +++++++|+.+... .++||+|++++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 57899999999999999999762 347999999999999999999999884 79999999876421 36899999998
Q ss_pred cccc-----------hhhHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+... ..++..++..+.++|+|||.+++.+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 7521 24577889999999999999988654
No 138
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.30 E-value=1.6e-12 Score=110.12 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=101.5
Q ss_pred hhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEE
Q 018346 79 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 158 (357)
Q Consensus 79 ~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~ 158 (357)
.-||.-.+.|+..+-..+.|+. -.++..++...+..+-.++||+|||||-.+..|... ..+++|
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltG 152 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM--ADRLTG 152 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH--HhhccC
Confidence 3344445666666655566631 235566777777777789999999999999998876 568999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 159 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 159 vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|||.+|++.|.++ |+ .-+..++|+..+. .+++||+|++..++.++.++..++..+...|+|||.+.+++-+
T Consensus 153 vDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 153 VDISENMLAKAHEK----GL-YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred CchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 99999999888764 22 1122334433222 1278999999999999999999999999999999999997654
Q ss_pred C
Q 018346 236 H 236 (357)
Q Consensus 236 ~ 236 (357)
-
T Consensus 228 l 228 (287)
T COG4976 228 L 228 (287)
T ss_pred c
Confidence 3
No 139
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.29 E-value=2.5e-11 Score=104.36 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=85.6
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----cccCccEEEEccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASYDRIYSIEM 205 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~Ii~~~~ 205 (357)
...+||||||.|.+...+|...|+..++|+|++...+..+.+++...+++|+.++++|+..+. .++++|.|+.+.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 348999999999999999999999999999999999999999999999999999999988732 2378999999876
Q ss_pred ccchh--------hHHHHHHHHHHhcccCceEEEEecc
Q 018346 206 FEHMK--------NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 206 ~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
=-+.. -...+++.+.++|+|||.+.+.+-.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 54442 1367999999999999999887653
No 140
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.29 E-value=3.5e-11 Score=103.94 Aligned_cols=119 Identities=19% Similarity=0.299 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEe
Q 018346 109 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVA 186 (357)
Q Consensus 109 ~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~ 186 (357)
.+...+..++..++... ++.+||||||++|..++++++..| +++|+.+|++++..+.|+++++..|+. +|+++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 34445556666666544 567999999999999999999886 689999999999999999999999884 8999999
Q ss_pred ccCCCcc-------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 187 DISTFEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 187 d~~~~~~-------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|..+... .++||+|+....= .++..+++.+.++|+|||.+++.-
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcc
Confidence 9876321 1479999998643 467888899999999999998853
No 141
>PRK00811 spermidine synthase; Provisional
Probab=99.29 E-value=2.1e-11 Score=111.18 Aligned_cols=107 Identities=20% Similarity=0.130 Sum_probs=84.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CCCeEEEEeccCCCcc--ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEM--EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~~--~~~fD~I 200 (357)
.++.+||+||||+|..+..+++..+..+|+++|+++.+++.|++.+...+ -++++++.+|...... .++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45689999999999999999876445699999999999999999876432 2489999999876432 3689999
Q ss_pred EEcccccchh----hHHHHHHHHHHhcccCceEEEEec
Q 018346 201 YSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 201 i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++...-...+ ...++++.+.+.|+|||++++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9975322211 136788999999999999988643
No 142
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.5e-10 Score=94.97 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=88.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
...-++|||||+|..+.+|++.. |++.+.++|+||.+++..++.++.++. +++.++.|+.+-..+++.|+++.|+++-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcC
Confidence 36789999999999999999875 778899999999999999999988887 7899999988754448999999999872
Q ss_pred ch---------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 208 HM---------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 208 ~~---------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
-- .-..+++..+-.+|.|.|++++.....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 11 114567777788899999999976644
No 143
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.26 E-value=6.7e-11 Score=114.62 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-- 192 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-- 192 (357)
..+++.+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++|+..+++++++|+.+|+.+..
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH
Confidence 345566666666677789999999999999999987 5699999999999999999999999889999999987531
Q ss_pred --c-ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 --M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 --~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ..+||+|+++++-..+ ...+++.+.+ ++|++.+++++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEcC
Confidence 1 1469999999986553 2455555553 88999887753
No 144
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.23 E-value=7.6e-11 Score=101.85 Aligned_cols=114 Identities=17% Similarity=0.317 Sum_probs=93.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEE-eccCCC
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV-ADISTF 191 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~-~d~~~~ 191 (357)
...+..+++. .++++|||||++.|..+++++...| +.+++.+|++++..+.|++++++.|++ +|..+. +|..+.
T Consensus 48 g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 48 GALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 4455555443 4778999999999999999999998 789999999999999999999999996 588888 476653
Q ss_pred cc---ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 192 EM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 192 ~~---~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. .++||+|+...-= .+++.+++.+.++|+|||.+++.-.
T Consensus 125 l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 125 LSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 22 2789999986432 4678899999999999999988533
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=9.8e-11 Score=97.14 Aligned_cols=80 Identities=26% Similarity=0.342 Sum_probs=69.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
+.-.+.+|+|+|||+|.+++..+-.. ..+|+|+|+++++++.+++|+.+.+ .+|.|+.+|+.++. ..+|.++.|++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~--~~~dtvimNPP 117 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDFR--GKFDTVIMNPP 117 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhcC--CccceEEECCC
Confidence 34467899999999999999988764 3699999999999999999999844 48999999999875 67999999999
Q ss_pred ccch
Q 018346 206 FEHM 209 (357)
Q Consensus 206 ~~~~ 209 (357)
+.-.
T Consensus 118 FG~~ 121 (198)
T COG2263 118 FGSQ 121 (198)
T ss_pred Cccc
Confidence 9644
No 146
>PLN02476 O-methyltransferase
Probab=99.23 E-value=1.7e-10 Score=103.54 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF 191 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~ 191 (357)
+..++..++.. .++++|||||||+|..+++++...| +.+|+++|.+++..+.|+++++..|+. +|+++.+|+.+.
T Consensus 106 ~g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~ 182 (278)
T PLN02476 106 QAQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 34445545443 3578999999999999999998764 678999999999999999999999995 899999998763
Q ss_pred cc-------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 192 EM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 192 ~~-------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.. .++||+|+....= .++..+++.+.++|+|||.+++.
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEe
Confidence 21 1579999998653 46788999999999999998884
No 147
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.21 E-value=2.5e-10 Score=97.01 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=82.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcE---------EEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEe
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK---------ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVA 186 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~---------v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~ 186 (357)
+...++......++..|||-.||+|.+.+..+...++.. ++|+|+++.+++.|++|+...++. .+.+.+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 334466666777889999999999999999887655555 899999999999999999999885 7899999
Q ss_pred ccCCCcc-ccCccEEEEcccccch--------hhHHHHHHHHHHhccc
Q 018346 187 DISTFEM-EASYDRIYSIEMFEHM--------KNYQNLLKKISKWMKE 225 (357)
Q Consensus 187 d~~~~~~-~~~fD~Ii~~~~~~~~--------~~~~~~l~~~~~~Lkp 225 (357)
|+.+++. .+++|+|++++++..- .-+..+++.+.++|++
T Consensus 96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9999874 3789999999998543 2256778888899998
No 148
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.20 E-value=5.7e-11 Score=99.17 Aligned_cols=82 Identities=12% Similarity=0.158 Sum_probs=71.2
Q ss_pred EEEcCCHHHHHHHHHHHHHcC---CCCeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 157 TGICNSKTQKEFIEEQCRVLE---LQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 157 ~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+|+|++|++.|+++....+ .++++|+++|+.+++.+ ++||+|++..+++++++...++++++++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999987765322 24799999999998766 68999999999999999999999999999999999998
Q ss_pred eccCCC
Q 018346 233 HFCHKT 238 (357)
Q Consensus 233 ~~~~~~ 238 (357)
+++.+.
T Consensus 81 d~~~~~ 86 (160)
T PLN02232 81 DFNKSN 86 (160)
T ss_pred ECCCCC
Confidence 876543
No 149
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.20 E-value=5.3e-11 Score=102.03 Aligned_cols=108 Identities=23% Similarity=0.329 Sum_probs=88.1
Q ss_pred CEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----c-ccCccEEEEc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRIYSI 203 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~fD~Ii~~ 203 (357)
.+||++|||.|.....+.+..|+ ..|+++|.||.+++..+++..... +++.....|+.... . ++++|+|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999999999988766 899999999999999888765433 36666666766432 2 2789999999
Q ss_pred ccccch--hhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 204 EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 204 ~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
.++..+ +.....++++.++|||||.+++-+.+....
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl 189 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL 189 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence 999888 457789999999999999999988766543
No 150
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.20 E-value=1.4e-10 Score=105.21 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=83.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCcc--ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~fD~Ii 201 (357)
..+.+||+||||+|..+..+++..+..+++++|+++++++.+++.+...+ .++++++.+|..+... .++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45569999999999999999876556789999999999999999875432 1378888888765321 26899999
Q ss_pred Ecccccch--hh--HHHHHHHHHHhcccCceEEEEec
Q 018346 202 SIEMFEHM--KN--YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 202 ~~~~~~~~--~~--~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+....... .. ..++++.+.+.|+|||++++...
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 97753222 11 46788999999999999998643
No 151
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=6.1e-10 Score=95.41 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=84.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc--c--c-cCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE--M--E-ASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~--~--~-~~fD~Ii~ 202 (357)
++.+|||++||+|.+++.++.+. ..+|+++|.++.+++.+++|+..++.. +++++.+|+.+.. . . ..||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999884 348999999999999999999999875 7999999996531 1 1 24899999
Q ss_pred cccccchhhHHHHHHHHHH--hcccCceEEEEeccC
Q 018346 203 IEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 236 (357)
.+++.. .....+++.+.+ +|+++|.++++....
T Consensus 128 DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 128 DPPFFN-GALQALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred CcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 999864 344555555543 689999999887654
No 152
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.18 E-value=1.1e-10 Score=107.96 Aligned_cols=109 Identities=21% Similarity=0.171 Sum_probs=80.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-------C---CCeEEEEeccCCCc------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------L---QNVEIIVADISTFE------ 192 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-------~---~~v~~~~~d~~~~~------ 192 (357)
++.+|||+|||-|+-..-..... -..++|+|+|...|+.|+++..... . -...|+.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999888776666553 4699999999999999999983311 1 14678888876531
Q ss_pred cc-cCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 193 ME-ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 193 ~~-~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.. .+||+|-|...+|+. ...+.+++++.+.|+|||+++..+|....
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 12 489999999999988 44667999999999999999999887543
No 153
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.17 E-value=5.6e-11 Score=101.94 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=74.6
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc-ccCccEEEEcccccch
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-EASYDRIYSIEMFEHM 209 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~-~~~fD~Ii~~~~~~~~ 209 (357)
.++|+|||+|.-++.++..+ .+|+|+|+|+.||+.|++.....-. ....+...++.++.. +++.|+|++..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 89999999998888888874 5899999999999988875433221 123444444444432 3889999999999999
Q ss_pred hhHHHHHHHHHHhcccCc-eEEE
Q 018346 210 KNYQNLLKKISKWMKEDT-LLFV 231 (357)
Q Consensus 210 ~~~~~~l~~~~~~LkpgG-~l~~ 231 (357)
+.+++++.+.++||++| .+.+
T Consensus 114 -dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEEE
Confidence 68899999999998877 5444
No 154
>PLN02366 spermidine synthase
Probab=99.16 E-value=3.4e-10 Score=103.89 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=83.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--CC--CCeEEEEeccCCCc--c-ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE--M-EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~~--~~v~~~~~d~~~~~--~-~~~fD~I 200 (357)
.++.+||+||||.|..+..+++..+..+|+.+|+++.+++.+++.+... +. ++++++.+|..... . .++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999999999999987633468999999999999999987653 22 48999999976532 1 3579999
Q ss_pred EEcccccchh----hHHHHHHHHHHhcccCceEEEEec
Q 018346 201 YSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 201 i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++...-...+ ...++++.+.+.|+|||+++....
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9975432221 235789999999999999977543
No 155
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.16 E-value=5.8e-10 Score=94.27 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=79.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCeEEEEeccCCCc----cc-cCcc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEIIVADISTFE----ME-ASYD 198 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~v~~~~~d~~~~~----~~-~~fD 198 (357)
..++.+|||+|||+|..++.++...+..+|+.+|.++ .++..+.|+..++ . .++.+...|+.+.. .. .+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3578899999999999999999875578999999998 9999999998876 2 47888888886622 11 5799
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|+...+++.-.....+++.+.++|+|+|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999888889999999999999999987776654
No 156
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.15 E-value=4.2e-10 Score=98.38 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=91.6
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cc-cCccEEEEccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIEM 205 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~fD~Ii~~~~ 205 (357)
...+||||||.|.....+|++.|...++|||+....+..|.+.+.+.+++|+.+++.|+..+. .+ ++.|-|+.+.+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 368999999999999999999999999999999999999999999999989999999988742 22 58999999876
Q ss_pred ccchhh--------HHHHHHHHHHhcccCceEEEEecc
Q 018346 206 FEHMKN--------YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 206 ~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
=-+... ...+++.+.+.|+|||.+.+.+-.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 544421 467999999999999999996643
No 157
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=4.8e-10 Score=102.22 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=97.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCccc-cC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME-AS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~~~-~~ 196 (357)
..++......+|..|||--||||++.+.+.-. |++++|+|++..|+.-|+.|+...++....+... |+..++++ ++
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCc
Confidence 34555566789999999999999999998865 8999999999999999999999998877766666 99998877 45
Q ss_pred ccEEEEcccccch---------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 197 YDRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 197 fD~Ii~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|.|++.+++.-- .-+..+++.+.++||+||++++..+
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999999988432 2267899999999999999999776
No 158
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.14 E-value=4.1e-10 Score=106.28 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 193 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 193 (357)
..+++.+.+.+... +.+|||++||+|.+++.+++. ..+|+|+|+|+.+++.|++|+..+++++++|+.+|+.+...
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 34555555554332 357999999999999999987 45999999999999999999999998899999999876321
Q ss_pred ----------------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 194 ----------------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 194 ----------------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
..+||+|+..++..++ ...+++.+.+ |++++++++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEEEeCH
Confidence 1148999999997654 2445555543 78888887653
No 159
>PRK01581 speE spermidine synthase; Validated
Probab=99.14 E-value=2.8e-10 Score=105.11 Aligned_cols=108 Identities=16% Similarity=0.087 Sum_probs=81.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHH--HH---HcC--CCCeEEEEeccCCCcc--ccCc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ--CR---VLE--LQNVEIIVADISTFEM--EASY 197 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~--~~---~~~--~~~v~~~~~d~~~~~~--~~~f 197 (357)
..++.+||+||||.|..+..+++..+..+|+++|+++++++.|++. +. ... .++++++.+|..+... .++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3456899999999999998888764457999999999999999962 11 111 2489999999887432 2679
Q ss_pred cEEEEcccccc---h--hhHHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEH---M--KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~---~--~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|++..+-.. . -.-..+++.+.+.|+|||++++...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999853211 1 1236789999999999999888644
No 160
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.14 E-value=3.9e-10 Score=103.61 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-CCC-CeEEEE-eccCCCc-----cccCccEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIV-ADISTFE-----MEASYDRI 200 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-~~~-~v~~~~-~d~~~~~-----~~~~fD~I 200 (357)
++.+|||||||+|++...++...++++++|+|+++.+++.|++++..+ ++. +|++.. .|...+. ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999999999988878899999999999999999999998 674 788764 3332211 12579999
Q ss_pred EEcccccch
Q 018346 201 YSIEMFEHM 209 (357)
Q Consensus 201 i~~~~~~~~ 209 (357)
+||++++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999999754
No 161
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.12 E-value=3.6e-10 Score=96.09 Aligned_cols=109 Identities=21% Similarity=0.336 Sum_probs=84.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc-----cccCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE-----MEASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~-----~~~~fD~Ii~ 202 (357)
++.++||+.||+|.+++..+.+. ..+|+.||.|+.++...++|++..+.. ++..+..|..... ...+||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 68999999999999999998884 469999999999999999999999875 5899999965432 1268999999
Q ss_pred cccccchhhHHHHHHHHH--HhcccCceEEEEeccCCC
Q 018346 203 IEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~ 238 (357)
.||+..-..+..+++.+. .+|+++|.++++......
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~ 158 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKED 158 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSS
T ss_pred CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCC
Confidence 999976543577888887 789999999999876643
No 162
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.12 E-value=6.5e-10 Score=104.50 Aligned_cols=111 Identities=20% Similarity=0.281 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
.+++.+++.+...+ .+|||+|||+|.+++.+++.. .+|+|+|+|+.+++.|++|+..+++++++|+.+|+.+....
T Consensus 185 ~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 261 (353)
T TIGR02143 185 KMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAM 261 (353)
T ss_pred HHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHH
Confidence 35555555554323 479999999999999999874 59999999999999999999999988899999998763211
Q ss_pred ----------------cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ----------------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ----------------~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..||+|+..++-.++ ...+++.+. +|++++++++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~--~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVDPPRAGL--DPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred hhccccccccccccccCCCCEEEECCCCCCC--cHHHHHHHH---cCCcEEEEEcC
Confidence 137999999996554 244555544 37888888764
No 163
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.12 E-value=7.6e-10 Score=100.43 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 193 (357)
+++++++.+.+.++..++|.+||.|+.+..+++..| ..+|+|+|.++.+++.|++++.. .++++++++|+.++..
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHH
Confidence 566777877778888999999999999999999985 68999999999999999988765 3589999999987532
Q ss_pred cc---CccEEEEcc
Q 018346 194 EA---SYDRIYSIE 204 (357)
Q Consensus 194 ~~---~fD~Ii~~~ 204 (357)
+. ++|.|+++.
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 12 799999876
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.12 E-value=1e-09 Score=97.41 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCC
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF 191 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~ 191 (357)
+..++..+++.. +..+|||||+++|..+++++... ++.+|+.+|++++..+.|++++...|+ ++|+++.+|+.+.
T Consensus 67 ~g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 67 EGQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH
Confidence 344555555443 56799999999999999999876 468999999999999999999999997 4899999998764
Q ss_pred cc--------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 192 EM--------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 192 ~~--------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.. .++||+|+...- -..+...++.+.++|+|||.+++.
T Consensus 144 L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 21 158999999754 245678888899999999998873
No 165
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.11 E-value=5.9e-10 Score=105.41 Aligned_cols=99 Identities=19% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEEEEcccccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEH 208 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~Ii~~~~~~~ 208 (357)
+.+|||++||+|..++.++...+..+|+++|+++.+++.+++|++.++++++++.++|+..+.. .++||+|+++++ .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--G 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--C
Confidence 4689999999999999999876545899999999999999999999998888899999876433 357999999874 2
Q ss_pred hhhHHHHHHHHHHhcccCceEEEE
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
....++..+.+.++|||.++++
T Consensus 136 --s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 --SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CcHHHHHHHHHHhcCCCEEEEE
Confidence 3456788877889999999998
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.11 E-value=5.3e-10 Score=100.80 Aligned_cols=88 Identities=24% Similarity=0.350 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
..++.+++.++..++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+.+.+
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP- 90 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch-
Confidence 35566777777778899999999999999999988 56999999999999999988754 34899999999886543
Q ss_pred CccEEEEcccccc
Q 018346 196 SYDRIYSIEMFEH 208 (357)
Q Consensus 196 ~fD~Ii~~~~~~~ 208 (357)
.||.|++|.+++.
T Consensus 91 ~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 EFNKVVSNLPYQI 103 (258)
T ss_pred hceEEEEcCCccc
Confidence 5899999999864
No 167
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.11 E-value=3.5e-10 Score=106.15 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=91.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCccc-----cCccEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEME-----ASYDRI 200 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~~-----~~fD~I 200 (357)
.|++|||+.|=||.++++.|.. |+ +||+||+|..+++.|++|++.+|++ ++.|+++|+.++... .+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4899999999999999999976 66 9999999999999999999999984 689999999885321 489999
Q ss_pred EEcccc---------cchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMF---------EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+..||- .-..++..++..+.++|+|||.+++.+....
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 999864 1236788999999999999999998776554
No 168
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.11 E-value=1.1e-09 Score=93.28 Aligned_cols=104 Identities=22% Similarity=0.284 Sum_probs=85.7
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCcc---------ccCccEEE
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM---------EASYDRIY 201 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~---------~~~fD~Ii 201 (357)
+|||||||||..+.+++.++|.....-.|+++..+...+......+++|+ .-+..|+...+. .++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 69999999999999999999999999999999988888888877776543 234556655311 14799999
Q ss_pred Ecccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|..++|-+ .....+++.+.++|+|||.|++.-|-
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 99999876 55788999999999999999996553
No 169
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.10 E-value=6.1e-10 Score=101.68 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d~~~~~~~ 194 (357)
..++.+++...+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+ .++++++.+|+.+...
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence 35667777778888899999999999999999987 5789999999999999999988766 3589999999987654
Q ss_pred cCccEEEEcccccch
Q 018346 195 ASYDRIYSIEMFEHM 209 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~ 209 (357)
..||.|++|.+++--
T Consensus 100 ~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 PYFDVCVANVPYQIS 114 (294)
T ss_pred cccCEEEecCCcccC
Confidence 468999999988644
No 170
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1e-09 Score=104.96 Aligned_cols=115 Identities=24% Similarity=0.320 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
..++...++.++..++.++||+-||.|.+++.+|+. ..+|+|+|+++++++.|++|++.++++|++|..+|.+++...
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 457778888888888899999999999999999976 679999999999999999999999998999999999886433
Q ss_pred ----cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ----~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+|.|+..++-.+.+ +.+++.+. .++|..++++++-
T Consensus 357 ~~~~~~~d~VvvDPPR~G~~--~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGAD--REVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred ccccCCCCEEEECCCCCCCC--HHHHHHHH-hcCCCcEEEEeCC
Confidence 3789999999988774 34555554 4678888888654
No 171
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.08 E-value=5.4e-10 Score=101.47 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
..+.+++.+.+.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++... ++++++++|+.+++.+.-
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHc
Confidence 44566777777788999999999999999999984 4999999999999999887643 489999999998765422
Q ss_pred -ccEEEEcccccc
Q 018346 197 -YDRIYSIEMFEH 208 (357)
Q Consensus 197 -fD~Ii~~~~~~~ 208 (357)
+|.|++|.++.-
T Consensus 105 ~~~~vv~NlPY~i 117 (272)
T PRK00274 105 QPLKVVANLPYNI 117 (272)
T ss_pred CcceEEEeCCccc
Confidence 599999998753
No 172
>PRK03612 spermidine synthase; Provisional
Probab=99.08 E-value=4.8e-10 Score=110.67 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=82.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHH--HHHc-----CCCCeEEEEeccCCCcc--ccCc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQ--CRVL-----ELQNVEIIVADISTFEM--EASY 197 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~--~~~~-----~~~~v~~~~~d~~~~~~--~~~f 197 (357)
+++++|||+|||+|..+..+++. |. .+|+++|+++++++.++++ .... ..++++++.+|..+... +++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 46789999999999999999875 44 7999999999999999984 2221 12489999999887422 2689
Q ss_pred cEEEEcccccchhh-----HHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+++.+....+. ..++++.+.+.|||||.+++...
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99999876543221 24689999999999999998754
No 173
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.04 E-value=1.3e-09 Score=93.59 Aligned_cols=100 Identities=23% Similarity=0.356 Sum_probs=75.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
..++.+|+|+.||.|.+++.+|+..++..|+++|++|.+++.+++|++.++++ ++..+++|..++.....+|.|+++.+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45789999999999999999998666789999999999999999999999985 68999999998765678999999887
Q ss_pred ccchhhHHHHHHHHHHhcccCceEE
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
-... .++..+.+++++||++-
T Consensus 179 ~~~~----~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ESSL----EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SSGG----GGHHHHHHHEEEEEEEE
T ss_pred HHHH----HHHHHHHHHhcCCcEEE
Confidence 5433 46777889999999864
No 174
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.04 E-value=1.4e-09 Score=93.28 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=78.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CC-----------------------
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQ----------------------- 179 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~----------------------- 179 (357)
..+..+|||||.+|.++..+++.+....|+|+||++..|..|+++.+... +.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35789999999999999999999855689999999999999999864321 00
Q ss_pred -------CeEE-------EEeccCCCccccCccEEEEcccccch------hhHHHHHHHHHHhcccCceEEEE
Q 018346 180 -------NVEI-------IVADISTFEMEASYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 180 -------~v~~-------~~~d~~~~~~~~~fD~Ii~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
++.| ...|+.+.. ...||+|+|-.+--++ +....+++++.++|.|||+|+++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~-~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMI-QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhc-cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1222 222222111 1579999987765443 45889999999999999999995
No 175
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.03 E-value=3.8e-09 Score=89.60 Aligned_cols=97 Identities=25% Similarity=0.310 Sum_probs=83.6
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccchhh
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN 211 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~~ 211 (357)
+++|||+|.|..++.++-.+|+.+++.+|.+..-+...+......+++|+++++..+++.....+||+|++..+- .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence 899999999999999999999999999999999999999999999999999999999883233789999999764 5
Q ss_pred HHHHHHHHHHhcccCceEEEE
Q 018346 212 YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 212 ~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+++-+.++|++||.+++.
T Consensus 127 l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEE
Confidence 678899999999999998874
No 176
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.01 E-value=2.6e-09 Score=102.91 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=87.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCC----CCCEEEEECCcccHHHHHHHHHC----CCcEEEEEcCCHHHHHHHHHHHH
Q 018346 103 FSDASKTLEDAEKAMLELYCERSRLE----DGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 103 f~~~~~~l~~~~~~~l~~l~~~~~~~----~~~~vLDiGcG~G~~~~~la~~~----p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
|+.+.......+.++...+.+..... .+..|+|+|||+|.++...++.. ...+|++||-|+.++...++.+.
T Consensus 156 fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~ 235 (448)
T PF05185_consen 156 FEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN 235 (448)
T ss_dssp HCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH
Confidence 33333334444455555555554433 25789999999999988776552 23699999999999888877777
Q ss_pred HcCC-CCeEEEEeccCCCccccCccEEEEcccc--cchhhHHHHHHHHHHhcccCceEE
Q 018346 175 VLEL-QNVEIIVADISTFEMEASYDRIYSIEMF--EHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 175 ~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
.++. ++|+++.+|++++..+.++|+|||-..= ..-+-..+.+....+.|||||.++
T Consensus 236 ~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 236 ANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 7777 5899999999998777899999985532 111345567888889999999764
No 177
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.01 E-value=1.6e-09 Score=97.94 Aligned_cols=106 Identities=22% Similarity=0.241 Sum_probs=80.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc----ccCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM----EASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~----~~~fD~Ii~ 202 (357)
.+++|||+-|=+|+++.+.+... ..+|+.||.|..+++.+++|+..++++ +++|+..|+.+... .++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999999887652 348999999999999999999999874 89999999887421 268999999
Q ss_pred ccccc------chhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 203 IEMFE------HMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 203 ~~~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+|-- -..++.+++..+.++|+|||.+++.+.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 98642 1156888999999999999998765543
No 178
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.99 E-value=6.3e-09 Score=93.59 Aligned_cols=86 Identities=19% Similarity=0.349 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
.++.+++.++..++.+|||+|||+|.++..+++.. ..|+++|+++.+++.++++... .++++++.+|+.+.+.. .
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-~ 91 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-D 91 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-H
Confidence 45567777777788999999999999999999885 4799999999999999887643 24899999999887653 5
Q ss_pred cc---EEEEccccc
Q 018346 197 YD---RIYSIEMFE 207 (357)
Q Consensus 197 fD---~Ii~~~~~~ 207 (357)
+| +|++|.+++
T Consensus 92 ~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 92 FPKQLKVVSNLPYN 105 (253)
T ss_pred cCCcceEEEcCChh
Confidence 66 999998875
No 179
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.98 E-value=1.1e-09 Score=93.68 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=79.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
...+.||.|+|.|.++..+.... -.+|..+|.++..++.|++.....+..-.++.+..+.++.++ .+||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 45799999999999998775443 458999999999999999876552222467888888887655 7899999999999
Q ss_pred ch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 208 HM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 208 ~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+ .+..+++++|...|+|||++++-....
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 99 568899999999999999999965543
No 180
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.98 E-value=7.9e-09 Score=86.66 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=86.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc--cc--cCccEEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME--ASYDRIYS 202 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~--~~fD~Ii~ 202 (357)
-.+.++||+-+|||.+++..+.+. ..+++.||.|..++...++|++..+. .+++++..|..... .. ++||+|+.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 368999999999999999999885 56999999999999999999999885 38899999988531 12 34999999
Q ss_pred cccccc-hhhHHHHHHH--HHHhcccCceEEEEeccCC
Q 018346 203 IEMFEH-MKNYQNLLKK--ISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 203 ~~~~~~-~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~ 237 (357)
.+|++. +-+....+.. -..+|+|+|.++++.....
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence 999982 2222223333 3467999999999877554
No 181
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.98 E-value=3.1e-09 Score=94.82 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=86.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-C-----CeEEEEeccCCC------ccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-----NVEIIVADISTF------EME 194 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~-----~v~~~~~d~~~~------~~~ 194 (357)
.+++..++|+|||-|+-++-.-+.. -..++|+||+...++.|+++.....- . .+.|+.+|.... +++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3577899999999999888776653 35899999999999999998765321 1 478999997652 223
Q ss_pred -cCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 -ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+||+|-|-.++|+- ...+.++.++.++|+|||+++-.+|..
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 349999999999876 456778999999999999999988865
No 182
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=1.7e-08 Score=87.03 Aligned_cols=98 Identities=26% Similarity=0.336 Sum_probs=86.7
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC-ccEEEEcccccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS-YDRIYSIEMFEH 208 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-fD~Ii~~~~~~~ 208 (357)
+.+++|||+|.|.-++.+|-.+|+.+|+-+|....-+...+......+++|++++++.++++..... ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 6899999999999999999888999999999999999999999999999899999999998764334 999999865
Q ss_pred hhhHHHHHHHHHHhcccCceEEE
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.+...+.+-+..++|+||.+++
T Consensus 145 -a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 -ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -cchHHHHHHHHHhcccCCcchh
Confidence 3667788889999999998754
No 183
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.96 E-value=4.4e-09 Score=85.20 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=104.7
Q ss_pred cCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEE
Q 018346 81 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGI 159 (357)
Q Consensus 81 y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~v 159 (357)
++....|++.|+....+.. .+........+.+...++...+..|||+|.|+|.++..+.++. +...++++
T Consensus 9 f~~e~~F~k~wi~~PrtVG---------aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~i 79 (194)
T COG3963 9 FDEEISFFKGWIDNPRTVG---------AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAI 79 (194)
T ss_pred HHHHHHHHHHHhcCCceee---------eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEE
Confidence 3444578888877653331 1111122234456666677789999999999999999999875 55689999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEE
Q 018346 160 CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 160 D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~-~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 231 (357)
|.|++......+... .+.++.+|+.++.. . ..||.|+|..++-.++ -..++++.+...|.+||.++-
T Consensus 80 E~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 80 EYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred EeCHHHHHHHHHhCC-----CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 999998877766543 56689999887641 1 5699999999887773 456789999999999999988
Q ss_pred EeccC
Q 018346 232 HHFCH 236 (357)
Q Consensus 232 ~~~~~ 236 (357)
.+.++
T Consensus 155 ftYgp 159 (194)
T COG3963 155 FTYGP 159 (194)
T ss_pred EEecC
Confidence 77763
No 184
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.96 E-value=2.7e-08 Score=88.21 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=90.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCc----cccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFE----MEASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~----~~~~fD~I 200 (357)
..+.+||||.||.|..........|. .+|...|.|+..++..++.++..|+.++ +|.++|+.+.. .....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999998888876 6999999999999999999999999766 99999998742 11457999
Q ss_pred EEcccccchhh---HHHHHHHHHHhcccCceEEEE
Q 018346 201 YSIEMFEHMKN---YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 201 i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+.++.++.++| ....+..+.+++.|||.++..
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 99999999966 456788999999999998874
No 185
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.96 E-value=1.1e-08 Score=98.86 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=91.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEEEE
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYS 202 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~Ii~ 202 (357)
...++.+|||+|||.|+-+..++.... ...|+++|+++..+..+++|+.+.|+.+|.+...|...+. .+..||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 557889999999999999999998864 3689999999999999999999999988999999987653 2367999998
Q ss_pred cccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 203 IEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..+-.+. .-..+++..+.+.|||||+|+.++.+.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 7754321 113678999999999999998776653
No 186
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.95 E-value=4.1e-09 Score=95.72 Aligned_cols=100 Identities=29% Similarity=0.450 Sum_probs=79.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
-.++.|||+|||+|.+++..|+.+ ..+|+++|.|.-+ +.|.+.+..++++ .|+++.+.+++...+ ++.|+|+|-++
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 468999999999999999999986 5699999997765 9999999999986 589999999987656 89999999765
Q ss_pred ccchhhHHHHHHH----HHHhcccCceEE
Q 018346 206 FEHMKNYQNLLKK----ISKWMKEDTLLF 230 (357)
Q Consensus 206 ~~~~~~~~~~l~~----~~~~LkpgG~l~ 230 (357)
=+.+ -++..+.. =-+.|+|||.++
T Consensus 137 Gy~L-l~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFL-LYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHH-HHhhhhhhhhhhhhhccCCCceEc
Confidence 4333 22333333 347899999865
No 187
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.95 E-value=9.9e-09 Score=89.90 Aligned_cols=96 Identities=17% Similarity=0.295 Sum_probs=76.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~Ii~~~~~~ 207 (357)
...++||||+|.|.++..++..+ .+|+++|.|+.| +.+.++.|. +++ |..++.. ..+||+|.|.++++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~M----r~rL~~kg~---~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPM----RWRLSKKGF---TVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHH----HHHHHhCCC---eEE--ehhhhhccCCceEEEeehhhhh
Confidence 45789999999999999999885 479999999997 455555655 222 2222221 25799999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.-..+..+++.+++.|+|+|++++...-
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999999999987653
No 188
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.94 E-value=6.8e-09 Score=92.95 Aligned_cols=105 Identities=24% Similarity=0.296 Sum_probs=81.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
.-.++.|||+|||+|.++...+... ..+|++++.| +|.+.|++.++.+++ ++|.++.+.+++...+++.|+||+-++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPM 252 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPM 252 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccc
Confidence 3467899999999999999998874 5699999985 578999999988877 599999999999887889999998764
Q ss_pred ccch--hhHHHHHHHHHHhcccCceEEEEe
Q 018346 206 FEHM--KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 206 ~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
=.-+ +..-+..-..++.|||.|.++=..
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 3222 112222334569999999976543
No 189
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.8e-09 Score=84.14 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
++..+.+..+.-.|++++|+|||.|-++...+ .+....|+|+||+|++++.+.+|+....+ ++.++++|+.++.+. +
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g 113 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCC
Confidence 44444445554578999999999999995544 22345899999999999999999999887 889999999987655 7
Q ss_pred CccEEEEcccccch
Q 018346 196 SYDRIYSIEMFEHM 209 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~ 209 (357)
.||.++.|+++..-
T Consensus 114 ~fDtaviNppFGTk 127 (185)
T KOG3420|consen 114 IFDTAVINPPFGTK 127 (185)
T ss_pred eEeeEEecCCCCcc
Confidence 89999999998543
No 190
>PRK04148 hypothetical protein; Provisional
Probab=98.92 E-value=1.6e-08 Score=80.50 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=73.7
Q ss_pred HHHHcCCCCCCEEEEECCcccH-HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASY 197 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~-~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~f 197 (357)
+.+.+...++.+|||||||+|. ++..|++. +..|+++|+|+.+++.++++ .+.++.+|+.+..+. ..+
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcC
Confidence 4444444566899999999996 88888876 78999999999988777664 468899999986655 789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
|+|.+.-+-. +....+-++.+. -|.-+++...+...
T Consensus 79 ~liysirpp~---el~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 79 KLIYSIRPPR---DLQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred CEEEEeCCCH---HHHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 9999865532 333334444432 25666665554443
No 191
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.88 E-value=1.8e-08 Score=94.75 Aligned_cols=125 Identities=24% Similarity=0.326 Sum_probs=80.4
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 018346 98 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 177 (357)
Q Consensus 98 y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~ 177 (357)
++++.|...+.. ....+++.+++.++..++ +|||+.||.|.+++.+|.. ..+|+|+|+++.+++.|++|+..++
T Consensus 169 ~~~~sFfQvN~~---~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 169 ISPGSFFQVNPE---QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp EETTS---SBHH---HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ECCCcCccCcHH---HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC
Confidence 344455533322 235577888888877665 8999999999999999987 5799999999999999999999999
Q ss_pred CCCeEEEEeccCCCcc----------------c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 178 LQNVEIIVADISTFEM----------------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 178 ~~~v~~~~~d~~~~~~----------------~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++|++|+.++..++.. . ..+|+|+..||-.++. ..+++.+.+ +.-++++++
T Consensus 243 i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~~~~~~~---~~~ivYvSC 310 (352)
T PF05958_consen 243 IDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--EKVIELIKK---LKRIVYVSC 310 (352)
T ss_dssp --SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--HHHHHHHHH---SSEEEEEES
T ss_pred CCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--HHHHHHHhc---CCeEEEEEC
Confidence 9999999987654311 1 2589999999988874 234444432 344455543
No 192
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.88 E-value=2e-08 Score=94.62 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=85.7
Q ss_pred CCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEcccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 206 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~ 206 (357)
+.+|||+.||+|..++.++.+.++ .+|+++|+|+.+++.+++|++.+++.++.+++.|+..+... .+||+|...+ +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 469999999999999999988543 58999999999999999999999887799999998875332 5799999987 4
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. .+..+++.+.+.+++||.+++...
T Consensus 124 G---s~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 G---TPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C---CcHHHHHHHHHhcccCCEEEEEec
Confidence 2 335788899999999999999754
No 193
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.87 E-value=1.1e-08 Score=100.70 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHHHcCC-------CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe
Q 018346 109 TLEDAEKAMLELYCERSRL-------EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 181 (357)
Q Consensus 109 ~l~~~~~~~l~~l~~~~~~-------~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v 181 (357)
.+.+.|...++.......+ ..+..+||||||.|.++..+|..+|+..++|+|++...+..+.+.+...+++|+
T Consensus 320 ~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~ 399 (506)
T PRK01544 320 SLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF 399 (506)
T ss_pred CCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE
Confidence 4555555555443332222 246789999999999999999999999999999999999999999888888899
Q ss_pred EEEEeccCCCc--c-ccCccEEEEcccccchhh--------HHHHHHHHHHhcccCceEEEEec
Q 018346 182 EIIVADISTFE--M-EASYDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 182 ~~~~~d~~~~~--~-~~~fD~Ii~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.++..|+..+. + ++++|.|+.+.+=-|... ...+++.+.+.|||||.+.+.+-
T Consensus 400 ~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 400 LLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 99888875321 2 377999999887655421 36789999999999999998654
No 194
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.86 E-value=4.2e-08 Score=90.92 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC--------------------------------c
Q 018346 107 SKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------C 154 (357)
Q Consensus 107 ~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--------------------------------~ 154 (357)
..+|.+. +...++...+..++..++|--||+|.+++..|...++ +
T Consensus 172 ~ApLket---LAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a 248 (381)
T COG0116 172 PAPLKET---LAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERA 248 (381)
T ss_pred CCCchHH---HHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHH
Confidence 3455554 4455667777778889999999999999998876531 1
Q ss_pred -------EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEcccccch-------h-hHHHHHH
Q 018346 155 -------KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHM-------K-NYQNLLK 217 (357)
Q Consensus 155 -------~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~-------~-~~~~~l~ 217 (357)
.++|+|+++.+++.|+.|+...|+. .|+|.++|+..+..+ +.+|+||||+|+.-- . -+..+.+
T Consensus 249 ~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 249 RRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred hhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 3779999999999999999999994 799999999988665 789999999998421 1 3455666
Q ss_pred HHHHhcccCceEEEEec
Q 018346 218 KISKWMKEDTLLFVHHF 234 (357)
Q Consensus 218 ~~~~~LkpgG~l~~~~~ 234 (357)
.+.+.++--+..++.+.
T Consensus 329 ~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 329 TLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHhcCCceEEEEcc
Confidence 66677776677766544
No 195
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.85 E-value=6.5e-09 Score=85.80 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=57.9
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc---cC-ccEEEEccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---AS-YDRIYSIEM 205 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~---~~-fD~Ii~~~~ 205 (357)
..|+|+.||.|+.++.+|+. ..+|+++|+++..++.|+.|+...|+ ++|+|+++|+.+.... .. +|+|++++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 36999999999999999998 46899999999999999999999997 4999999999885432 22 899999998
Q ss_pred ccc
Q 018346 206 FEH 208 (357)
Q Consensus 206 ~~~ 208 (357)
..+
T Consensus 79 WGG 81 (163)
T PF09445_consen 79 WGG 81 (163)
T ss_dssp BSS
T ss_pred CCC
Confidence 754
No 196
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=8e-09 Score=97.83 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=108.6
Q ss_pred cCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEc
Q 018346 81 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 160 (357)
Q Consensus 81 y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD 160 (357)
++-...+++.+++-++..|++.|...+....+ .++..+-++++++.+..++|+.||||.++..+++. -.+|+|++
T Consensus 338 ~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~ae---vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvE 412 (534)
T KOG2187|consen 338 VGGDPYITESLLGLTFRISPGAFFQTNTSAAE---VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVE 412 (534)
T ss_pred EccccEEEeecCCeEEEECCchhhccCcHHHH---HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeee
Confidence 34445678888888888888777754444333 35566667788888999999999999999999987 57999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---c---cCcc-EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 161 NSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E---ASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 161 ~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~---~~fD-~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++++++.|++|+..+|+.|++|+++-.+++-. . ++-+ ++++.++--++. ..+++.+...-+|--.+++++
T Consensus 413 i~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh--~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 413 ISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLH--MKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred cChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCccccc--HHHHHHHHhccCccceEEEEc
Confidence 999999999999999999999999995555311 1 2345 666777655443 345555555544666666654
Q ss_pred cc
Q 018346 234 FC 235 (357)
Q Consensus 234 ~~ 235 (357)
..
T Consensus 491 n~ 492 (534)
T KOG2187|consen 491 NP 492 (534)
T ss_pred CH
Confidence 43
No 197
>PLN02823 spermine synthase
Probab=98.83 E-value=1.9e-08 Score=93.31 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=82.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCcc--ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~fD~Ii 201 (357)
..+.+||.||+|.|..+..+++..+..+|+++|++++.++.+++.....+ -++++++.+|...... .++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999999876556789999999999999999875432 2489999999887532 26899999
Q ss_pred Eccccc---chh---hHHHHHH-HHHHhcccCceEEEEec
Q 018346 202 SIEMFE---HMK---NYQNLLK-KISKWMKEDTLLFVHHF 234 (357)
Q Consensus 202 ~~~~~~---~~~---~~~~~l~-~~~~~LkpgG~l~~~~~ 234 (357)
+...-. ..+ ...++++ .+.+.|+|||++++...
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 974210 001 1356787 89999999999887643
No 198
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.83 E-value=6e-08 Score=99.25 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=90.1
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHC----C--------------------------------------C
Q 018346 117 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY----S--------------------------------------N 153 (357)
Q Consensus 117 ~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~----p--------------------------------------~ 153 (357)
+...++...+. .++..++|.+||+|.+.+..+... | .
T Consensus 177 lAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 177 LAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 44445555565 567899999999999999887531 1 1
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc---cCccEEEEcccccch----hhHHHHHHHHHHhcc-
Q 018346 154 CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYDRIYSIEMFEHM----KNYQNLLKKISKWMK- 224 (357)
Q Consensus 154 ~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~Lk- 224 (357)
.+++|+|+++.+++.|++|+...|+. .|.|.++|+.+++.+ ++||+|++|+|+..- .+...+.+.+.+.|+
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999985 699999999886543 469999999998533 234445555544444
Q ss_pred --cCceEEEEeccC
Q 018346 225 --EDTLLFVHHFCH 236 (357)
Q Consensus 225 --pgG~l~~~~~~~ 236 (357)
||+.+++.+...
T Consensus 337 ~~~g~~~~llt~~~ 350 (702)
T PRK11783 337 QFGGWNAALFSSSP 350 (702)
T ss_pred hCCCCeEEEEeCCH
Confidence 898888876644
No 199
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.80 E-value=3.7e-08 Score=91.41 Aligned_cols=120 Identities=17% Similarity=0.176 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHH-------CCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEec
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-------YSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVAD 187 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-------~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d 187 (357)
+.+.+++.+...++.+|+|.+||+|.+...+.+. .+...++|+|+++.++..|+.++.-.+.+ +..+..+|
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 3444555566677889999999999999888763 25789999999999999999888766652 34688888
Q ss_pred cCCCccc---cCccEEEEcccccch--h-------------------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 188 ISTFEME---ASYDRIYSIEMFEHM--K-------------------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 188 ~~~~~~~---~~fD~Ii~~~~~~~~--~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
....+.. .+||+|++|+|+... . ..-.++..+.+.|++||++.+..|..
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 7654322 579999999998543 0 11247889999999999998887754
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=3.5e-08 Score=87.41 Aligned_cols=88 Identities=18% Similarity=0.356 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA- 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~- 195 (357)
.++.+++..++.++..|||||+|.|.+|..|++. +.+|+++|+++..++..++.... .+|++++.+|+....++.
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhh
Confidence 5677888888888999999999999999999998 67899999999999988887652 248999999999887764
Q ss_pred -CccEEEEcccccc
Q 018346 196 -SYDRIYSIEMFEH 208 (357)
Q Consensus 196 -~fD~Ii~~~~~~~ 208 (357)
.++.|++|.+++-
T Consensus 94 ~~~~~vVaNlPY~I 107 (259)
T COG0030 94 AQPYKVVANLPYNI 107 (259)
T ss_pred cCCCEEEEcCCCcc
Confidence 7899999999853
No 201
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=8.1e-09 Score=87.84 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=88.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
....++|||||-|.+...+.... -.+++.+|-|..|++.++.. ...++ .+....+|-+.+++. +++|+|+++..+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence 45689999999999999998874 35899999999999877653 23334 566777887777776 8899999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+..+++..+.+|...|||+|.++.+.+...
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhccc
Confidence 999999999999999999999988777654
No 202
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.79 E-value=1.9e-08 Score=85.32 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=63.4
Q ss_pred HHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
.+++.+.- +++..|-|+|||.+.++..+.. ...|...|+-+. +-.++.+|+...|.+ ++.
T Consensus 62 ~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~sv 123 (219)
T PF05148_consen 62 VIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---------------NPRVTACDIANVPLEDESV 123 (219)
T ss_dssp HHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---------------STTEEES-TTS-S--TT-E
T ss_pred HHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---------------CCCEEEecCccCcCCCCce
Confidence 34444433 3467999999999999865532 458999998553 224578999988877 889
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|++|+..++-+. ++..++.++.|+|||||.|.|.....+
T Consensus 124 Dv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 124 DVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp EEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred eEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEeccc
Confidence 999998887655 788999999999999999999877554
No 203
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=3.4e-08 Score=90.88 Aligned_cols=107 Identities=25% Similarity=0.292 Sum_probs=92.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
.+|.+|+|+-+|.|.+++.+|+.. ...|+++|++|.+++..++|++.+++. .+..+++|..+.... +.+|.|+++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 368999999999999999999884 234999999999999999999999986 499999999998766 78999999876
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
- ....++..+.+.+++||++......+...
T Consensus 266 ~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K----SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred C----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 4 44567888888999999999988776554
No 204
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.78 E-value=2.8e-08 Score=92.82 Aligned_cols=158 Identities=21% Similarity=0.297 Sum_probs=119.1
Q ss_pred hhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEE
Q 018346 77 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKI 156 (357)
Q Consensus 77 ~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v 156 (357)
+..+|+...++|..-++..++.+ .+ .+.....+.....-....-+....++.+++|+|||.|....+++.. ..+.+
T Consensus 61 ~~~~y~~~~dl~~~~w~~~~h~~--~~-~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~ 136 (364)
T KOG1269|consen 61 IAKYYNNSTDLYERNWGQSFHFG--RI-PEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF-KKAGV 136 (364)
T ss_pred HHHHhcccchhhhhhhccchhcc--Cc-cchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh-ccCCc
Confidence 36889999899999888875553 22 2222222221111111122234457779999999999999999865 37899
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 157 TGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 157 ~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|+|.++..+..+.......+++ +..++.+|+...+++ +.||.+.+..+.+|.++....++++.++++|||..+...+
T Consensus 137 ~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 137 VGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 99999999998888877777664 556688888887776 8899999999999999999999999999999999999776
Q ss_pred cCCC
Q 018346 235 CHKT 238 (357)
Q Consensus 235 ~~~~ 238 (357)
....
T Consensus 217 i~~~ 220 (364)
T KOG1269|consen 217 IKTA 220 (364)
T ss_pred HHhh
Confidence 6543
No 205
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.78 E-value=6.1e-08 Score=87.58 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=85.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCccc--cCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~~fD~Ii~ 202 (357)
..++||-||.|.|..+..+.+..+-.+++.|||++..++.+++.+.... -++++.+..|..++... .+||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 3469999999999999999998777899999999999999999886654 35899999998875332 57999998
Q ss_pred cccccch-----hhHHHHHHHHHHhcccCceEEEE
Q 018346 203 IEMFEHM-----KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 203 ~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...=. . -.-..+++.+.+.|+|+|+++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 75432 1 12378999999999999999987
No 206
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.7e-07 Score=86.73 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=93.7
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---c-cC
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-AS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~ 196 (357)
..+...++.+|||++++.|+=+..++...++ ..|+++|+|+.-+...++|+++.|+.++..+..|....+. . ++
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCc
Confidence 3456788999999999999999999988753 5679999999999999999999999888889988765432 1 35
Q ss_pred ccEEEEcccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||.|+...+-... .-..+++..+.++|||||.|+.++.+.
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 9999998765321 115679999999999999999987654
No 207
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.73 E-value=7.4e-08 Score=84.53 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHH-HHHHHHHcCCCCeE-EEEeccCC--
Q 018346 116 AMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF-IEEQCRVLELQNVE-IIVADIST-- 190 (357)
Q Consensus 116 ~~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~-a~~~~~~~~~~~v~-~~~~d~~~-- 190 (357)
..+..+++..++ .++.+|||+|||+|.++..+++.. ..+|+|+|+++.++.. .+++. ++. +...|+..
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~------~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDE------RVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCC------CeeEeecCCcccCC
Confidence 355566666655 367899999999999999999873 4689999999988765 22211 221 22223332
Q ss_pred ---Cccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 191 ---FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 191 ---~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+ ..+|+++++. ..++..+.++|+| |.+++-
T Consensus 134 ~~~~~~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 134 PADIFPDFATFDVSFISL--------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred HhHcCCCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEEE
Confidence 2111 3466655543 3358889999999 766553
No 208
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=8e-08 Score=80.94 Aligned_cols=102 Identities=25% Similarity=0.259 Sum_probs=80.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcC--------C--CCeEEEEeccCCCccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLE--------L--QNVEIIVADISTFEME 194 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~--------~--~~v~~~~~d~~~~~~~ 194 (357)
+.+|.+.||+|+|+|.++..++... ++..++|||.-++.++.+++|+...- + .++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5689999999999999999888553 34556999999999999999986543 1 2688999998875444
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+||.|.+...- ....+++...|+|||.+++-..
T Consensus 160 ~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 160 QAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred cCCcceEEEccCc------cccHHHHHHhhccCCeEEEeec
Confidence 789999997543 3455677888999999988433
No 209
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.71 E-value=8.3e-08 Score=83.93 Aligned_cols=89 Identities=16% Similarity=0.263 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~ 195 (357)
.++.+++..++.++..|||+|.|+|.++..+.+. +++|+++|+++.++....++...... ...+++.+|+...+. .
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-P 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-c
Confidence 5667888889999999999999999999999998 88999999999999999988876554 378999999988654 3
Q ss_pred CccEEEEcccccc
Q 018346 196 SYDRIYSIEMFEH 208 (357)
Q Consensus 196 ~fD~Ii~~~~~~~ 208 (357)
.||.+|+|.+++-
T Consensus 123 ~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 123 RFDGCVSNLPYQI 135 (315)
T ss_pred ccceeeccCCccc
Confidence 6999999987743
No 210
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=2.6e-07 Score=80.88 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=93.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc--
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-- 194 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-- 194 (357)
..++..+.+.||.+|||-|+|+|.++.++++.. |-.+++..|......+.|++.++..+++ ++++...|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 346677788999999999999999999999886 7789999999999999999999999984 999999999875433
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCc-eEEEEeccCC
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT-LLFVHHFCHK 237 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~ 237 (357)
..+|.|+.. ++.+...+..+.++||.+| +++-.+||.+
T Consensus 175 s~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 175 SLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred ccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEeccHHHH
Confidence 568888885 4466677788888998877 6655566554
No 211
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.69 E-value=3e-07 Score=83.75 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 193 (357)
+++.+++.+...++..++|.-||.|+.+..+++..|+.+|+|+|.++.+++.++++....+ +++.++++++.++..
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHH
Confidence 5667777777788889999999999999999998866899999999999999999887653 389999999887531
Q ss_pred --c-cCccEEEEcc
Q 018346 194 --E-ASYDRIYSIE 204 (357)
Q Consensus 194 --~-~~fD~Ii~~~ 204 (357)
. .++|.|+.+.
T Consensus 87 ~~~~~~vDgIl~DL 100 (305)
T TIGR00006 87 ELLVTKIDGILVDL 100 (305)
T ss_pred hcCCCcccEEEEec
Confidence 1 4689888865
No 212
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.68 E-value=2e-08 Score=85.81 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCC--CCeEEEEeccCCCc--cc-cCcc
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFE--ME-ASYD 198 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~--~~-~~fD 198 (357)
...+.+.+|||.+.|-|..++..+++ ++ +|+.++.+|..++.|.-|--..++ .+|+++.+|..+.. ++ .+||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 44557999999999999999999988 66 999999999999888776433333 26899999988753 23 6799
Q ss_pred EEEEcccccch---hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|+-.++--.. -...++.++++++|||||.++-.+-++
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 99998864333 235779999999999999987755433
No 213
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.67 E-value=4.6e-08 Score=87.29 Aligned_cols=109 Identities=18% Similarity=0.109 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCccc--c-CccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--A-SYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~-~fD~I 200 (357)
+++.+||-||.|.|..+..+.+..+..++++||+++..++.+++.+.... -++++++.+|....... + +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 36789999999999999999876545799999999999999999876532 24899999998764322 4 89999
Q ss_pred EEcccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+....-... -...++++.+.+.|+|||++++...+.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 986543111 124689999999999999999977443
No 214
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=4.1e-07 Score=78.07 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=90.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE-- 192 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~-- 192 (357)
++..+++.. .++++||||.=+|..+...|...| +.+|+++|++++..+.+.+..+..|++ +|++++++..+..
T Consensus 64 fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 64 FLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 444444443 578999999999999999998886 579999999999999999999999985 8999999877631
Q ss_pred ---c--ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 ---M--EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 ---~--~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. .++||+++... +-.++...++++.+++++||++++.-
T Consensus 141 l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEec
Confidence 1 26899999863 22456688999999999999998853
No 215
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=1.7e-07 Score=78.16 Aligned_cols=117 Identities=13% Similarity=0.165 Sum_probs=89.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCcc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 198 (357)
+.+.++-..-.+++|||+|+|+|-.++..++.. ...|+..|+.|.....++-|++.+|+ +|.+...|... + +..||
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~-~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S-PPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C-Cccee
Confidence 344444455578999999999999999988874 46899999999999999999999998 89999999876 2 36799
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+|+...++..-+...+++.-..++...|-.+++-++.+...
T Consensus 145 l~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 145 LLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred EEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 99999988777667777774444444555556556555443
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.64 E-value=3.2e-07 Score=79.30 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH-------HcCC--CCeEEEEec
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------VLEL--QNVEIIVAD 187 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~-------~~~~--~~v~~~~~d 187 (357)
.+..+++.+++.++...+|||||.|......+...+-.+++|||+.+...+.|..... ..|. .++++..+|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 4556777788889999999999999999988877644569999999998877765432 2333 378889999
Q ss_pred cCCCccc----cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 188 ISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 188 ~~~~~~~----~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+.+.+.. ...|+|++|...-. ++....+.+....||||.+++.
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 8764321 45799999876422 3455566777778888887654
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=98.62 E-value=4e-07 Score=81.39 Aligned_cols=100 Identities=11% Similarity=-0.020 Sum_probs=77.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--CC--CCeEEEEeccCCCccccCccEEEE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
.+++++||=||.|.|..++.+.++ | .+|+.|||+++.++.+++..... +. ++++++. .+.+ ...++||+||+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~-~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD-LDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh-ccCCcCCEEEE
Confidence 356799999999999999999976 4 49999999999999999965442 12 3777765 2222 11268999999
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
...+ .+.+++.+.+.|+|||.++.+.-+
T Consensus 146 Ds~~-----~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 146 LQEP-----DIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred cCCC-----ChHHHHHHHHhcCCCcEEEECCCC
Confidence 8543 367889999999999999986543
No 218
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.61 E-value=3.4e-07 Score=91.01 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=79.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC--------CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-----c-cc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----E-ME 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p--------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~ 194 (357)
...+|||.|||+|.+...++...+ ...++|+|+++.++..++.++...+...+.+...|.... . ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999999887653 157899999999999999998776521344555553321 1 11
Q ss_pred cCccEEEEcccccchhh----------------------------------------------HHHH-HHHHHHhcccCc
Q 018346 195 ASYDRIYSIEMFEHMKN----------------------------------------------YQNL-LKKISKWMKEDT 227 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~----------------------------------------------~~~~-l~~~~~~LkpgG 227 (357)
+.||+|++|+|+..... +..+ ++.+.++|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 57999999999864310 1113 356788999999
Q ss_pred eEEEEeccCC
Q 018346 228 LLFVHHFCHK 237 (357)
Q Consensus 228 ~l~~~~~~~~ 237 (357)
.+.+..|..-
T Consensus 191 ~~~~I~P~s~ 200 (524)
T TIGR02987 191 YVSIISPASW 200 (524)
T ss_pred EEEEEEChHH
Confidence 9999888653
No 219
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.61 E-value=1.3e-07 Score=82.10 Aligned_cols=97 Identities=16% Similarity=0.283 Sum_probs=74.9
Q ss_pred HHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
.+++.+.. .....|-|+|||.+.++. .. ...|+..|+-+. +-+++.+|+...|.+ ++.
T Consensus 170 ~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 170 VIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeecC---------------CCceeeccccCCcCccCcc
Confidence 34444433 356789999999998876 22 347999998443 556788999998877 899
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|++|+..++.+ .+...++.++.++|+|||.++|.....+
T Consensus 230 DvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 230 DVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred cEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 99998877644 4788999999999999999999876543
No 220
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.60 E-value=1.1e-07 Score=84.24 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCC-CCCEEEEECCccc--HHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEE
Q 018346 108 KTLEDAEKAMLELYCERSRLE-DGHTVLDVGCGWG--SLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 183 (357)
Q Consensus 108 ~~l~~~~~~~l~~l~~~~~~~-~~~~vLDiGcG~G--~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~ 183 (357)
..+....+..+...++.+... .-...||||||-- .....+++. .|+++|+-+|++|..+..++..+....-....+
T Consensus 46 ~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~ 125 (267)
T PF04672_consen 46 REAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAY 125 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEE
Confidence 344555566677666665444 4467999999943 355556554 589999999999999999998876653223899
Q ss_pred EEeccCCCcc-----c--cCcc-----EEEEcccccch---hhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCc
Q 018346 184 IVADISTFEM-----E--ASYD-----RIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 248 (357)
Q Consensus 184 ~~~d~~~~~~-----~--~~fD-----~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 248 (357)
+++|+.+... . +-+| .|+...++|++ +++..+++.+...|.||+.|+++..+....+.... ..
T Consensus 126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~--~~ 203 (267)
T PF04672_consen 126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAE--AL 203 (267)
T ss_dssp EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHH--HH
T ss_pred EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHH--HH
Confidence 9999987320 1 2344 67888899998 45889999999999999999999887754332110 00
Q ss_pred cchhhhcccCCCCCCCHHHHHhhcCCcEEEE
Q 018346 249 DDWITKYFFTGGTMPSANLLLYFQDDVSVVD 279 (357)
Q Consensus 249 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 279 (357)
.....+ -......-+.+.+..|.++++.++
T Consensus 204 ~~~~~~-~~~~~~~Rs~~ei~~~f~g~elve 233 (267)
T PF04672_consen 204 EAVYAQ-AGSPGRPRSREEIAAFFDGLELVE 233 (267)
T ss_dssp HHHHHH-CCS----B-HHHHHHCCTTSEE-T
T ss_pred HHHHHc-CCCCceecCHHHHHHHcCCCccCC
Confidence 011111 112234567778888888877654
No 221
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.57 E-value=4.1e-06 Score=77.21 Aligned_cols=149 Identities=7% Similarity=0.017 Sum_probs=97.7
Q ss_pred hhhcCC-ChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC----C
Q 018346 78 EQHYEL-PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----S 152 (357)
Q Consensus 78 ~~~y~~-~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----p 152 (357)
.-|||. +.+.|+....-. .||.. ... ..........+...+ .++..|+|+|||+|.-+..|.+.+ .
T Consensus 33 k~~YD~~Gs~LFe~It~lp-----EYYpt-r~E-~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~ 103 (319)
T TIGR03439 33 LLLYDDEGLKLFEEITYSP-----EYYLT-NDE-IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKK 103 (319)
T ss_pred HhhhcchHHHHHHHHHcCC-----ccCCh-HHH-HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCC
Confidence 567754 566787776543 23321 111 111122233444443 466799999999999887776654 2
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCCCe--EEEEeccCCC----cc---ccCccEEEEcc-cccch--hhHHHHHHHHH
Q 018346 153 NCKITGICNSKTQKEFIEEQCRVLELQNV--EIIVADISTF----EM---EASYDRIYSIE-MFEHM--KNYQNLLKKIS 220 (357)
Q Consensus 153 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~v--~~~~~d~~~~----~~---~~~fD~Ii~~~-~~~~~--~~~~~~l~~~~ 220 (357)
...++++|+|.++++.+.+++.....+.+ .-+++|..+. +. .....+++..+ ++.++ +....+++.++
T Consensus 104 ~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~ 183 (319)
T TIGR03439 104 SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFL 183 (319)
T ss_pred CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHH
Confidence 46899999999999999999884444444 4488888652 11 13356666654 67777 34567899999
Q ss_pred H-hcccCceEEEEecc
Q 018346 221 K-WMKEDTLLFVHHFC 235 (357)
Q Consensus 221 ~-~LkpgG~l~~~~~~ 235 (357)
+ .|+|||.+++..-.
T Consensus 184 ~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 184 ATALSPSDSFLIGLDG 199 (319)
T ss_pred HhhCCCCCEEEEecCC
Confidence 9 99999999986543
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.56 E-value=1.3e-07 Score=80.67 Aligned_cols=109 Identities=22% Similarity=0.228 Sum_probs=72.1
Q ss_pred HHHHHHHHcC-CC--CCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc
Q 018346 117 MLELYCERSR-LE--DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 192 (357)
Q Consensus 117 ~l~~l~~~~~-~~--~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~ 192 (357)
++.++.+..+ +. ++.+|||+||++|+++..+.++. +..+|+|+|+.+. ....++.++++|+.+..
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEE
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhh
Confidence 4556666666 44 34899999999999999999885 4589999999876 11236666677765421
Q ss_pred --------cc---cCccEEEEccccc-----------chhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 193 --------ME---ASYDRIYSIEMFE-----------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 193 --------~~---~~fD~Ii~~~~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.. .++|+|+|..... ...-....+.-+...|+|||.+++..+..
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 01 4799999988321 11223445556667899999999977753
No 223
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.54 E-value=1.1e-06 Score=80.09 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=91.8
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--c-cCccEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E-ASYDRI 200 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~-~~fD~I 200 (357)
+...++.+|||++++.|+-+..++...+ ...+++.|+++.-+...++++.+.|..++.....|...... . ..||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 4567889999999999999999998875 57999999999999999999999999889988888776522 1 459999
Q ss_pred EEcccccch----------------------hhHHHHHHHHHHhc----ccCceEEEEeccC
Q 018346 201 YSIEMFEHM----------------------KNYQNLLKKISKWM----KEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~----------------------~~~~~~l~~~~~~L----kpgG~l~~~~~~~ 236 (357)
+...+-... .-..++++.+.+.+ ||||+++.++-+.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 997754222 11567899999999 9999999887654
No 224
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.41 E-value=6.5e-06 Score=67.11 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=75.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHH-----HCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCeEEEEeccCCCccccCcc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQ-----KYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~-----~~p~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~v~~~~~d~~~~~~~~~fD 198 (357)
..+...|+|+|||.|.++..|+. . ++.+|+++|.++..++.+.++.+..+ . +++.+..++..+.......+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 35678999999999999999998 4 68899999999999999999988776 3 46777777766543335667
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.-..-..+ ...+++.+.+ |+-..++..|+-
T Consensus 102 ~~vgLHaCG~L--s~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 102 ILVGLHACGDL--SDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEEeecccch--HHHHHHHHHH---cCCCEEEEcCCc
Confidence 88875544433 2345555444 666666655553
No 225
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.41 E-value=4.2e-06 Score=76.04 Aligned_cols=122 Identities=15% Similarity=0.062 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 192 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~ 192 (357)
...+.++-.+.+.-.+.+|||+|||.|.-+-.+...++. .+++++|.|+.+++.++..+...... ...+......+..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 345555555554446689999999999877777766653 48999999999999998876544221 1111111111111
Q ss_pred cccCccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 193 MEASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.-.+.|+|++..++..+++ ...+++.+.+.+.+ .|++..++.+.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 1134599999999988854 45567777666655 77777666543
No 226
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.39 E-value=2.3e-06 Score=77.58 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=48.9
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-CCC-CeEEEEeccCCC-----cc-ccCccEEE
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIVADISTF-----EM-EASYDRIY 201 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-~~~-~v~~~~~d~~~~-----~~-~~~fD~Ii 201 (357)
..++||||||..++=-.|..+..+++++|+|+++..++.|++++..+ ++. +|+++...-... .. .+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 56899999998876444433333899999999999999999999998 774 888876643221 11 16799999
Q ss_pred Ecccccch
Q 018346 202 SIEMFEHM 209 (357)
Q Consensus 202 ~~~~~~~~ 209 (357)
||++++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99999765
No 227
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.38 E-value=1.9e-06 Score=78.67 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccch
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 209 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~ 209 (357)
-...+|+|.|.|.++..+...+|. |-+++.+...+..++.... . .|+.+.+|+.... .+-|+|++-.++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~~--P~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQDT--PKGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---CcceecccccccC--CCcCeEEEEeecccC
Confidence 478999999999999999998875 5666666666665655543 3 4788899988752 245899999999999
Q ss_pred --hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 210 --KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 210 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++..+++++|+..|+|||.+++.....+
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 5688999999999999999999776433
No 228
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.38 E-value=1.7e-07 Score=79.41 Aligned_cols=101 Identities=12% Similarity=0.184 Sum_probs=80.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-----cCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-----ASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-----~~fD~Ii~ 202 (357)
....|+|.-||.|+.++..+.. +..|+++|++|.-+..|+.|++..|++ +|+|+++|+.++-.. ..+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4568999999999999999988 569999999999999999999999995 999999999875321 34678888
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.++..+-.....-+-.+...++|.|.-++
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~~~~f 200 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMGTKIF 200 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhHHHHH
Confidence 88876655455555566667777755433
No 229
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.38 E-value=4.3e-06 Score=75.58 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
...+.+++.+++.++..|||+|+|.|.++..|++. +.+++++|+++..++..++.... .++++++.+|+.++....
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~--~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFAS--NPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTT--CSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhh--cccceeeecchhccccHH
Confidence 46677888888888999999999999999999988 48999999999998888886652 248999999999876543
Q ss_pred ----CccEEEEcccccchhhHHHHHHHHHH
Q 018346 196 ----SYDRIYSIEMFEHMKNYQNLLKKISK 221 (357)
Q Consensus 196 ----~fD~Ii~~~~~~~~~~~~~~l~~~~~ 221 (357)
....|++|.++ ++ ...++.++..
T Consensus 93 ~~~~~~~~vv~NlPy-~i--s~~il~~ll~ 119 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NI--SSPILRKLLE 119 (262)
T ss_dssp HCSSSEEEEEEEETG-TG--HHHHHHHHHH
T ss_pred hhcCCceEEEEEecc-cc--hHHHHHHHhh
Confidence 56789999887 33 2445555555
No 230
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.34 E-value=3.6e-07 Score=86.97 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=66.9
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEE---cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGI---CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~v---D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
..+||+|||+|.++.+|.++ +..+..+ |..+.+++.|.+ .|++-+ +-..-...+|++ +.||+|-|..++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale----RGvpa~-~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE----RGVPAM-IGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh----cCcchh-hhhhccccccCCccchhhhhccccc
Confidence 47999999999999999987 5444333 333344444433 344211 111112346666 889999999888
Q ss_pred cch-hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 207 EHM-KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
..+ ++-..++-++-|+|+|||+++.+.+...
T Consensus 192 i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 192 IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 665 3334578889999999999999876543
No 231
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.33 E-value=1.1e-05 Score=65.96 Aligned_cols=105 Identities=22% Similarity=0.347 Sum_probs=75.3
Q ss_pred EEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC--Ccccc--CccEEEEccccc
Q 018346 133 VLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEA--SYDRIYSIEMFE 207 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~--~fD~Ii~~~~~~ 207 (357)
++|+|||+|... .++...+. ..++++|+++.++..++......+...+.+...|... .++.. .||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 44443322 4899999999999885554433211116888888775 45443 799994444444
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+.. ....+..+.+.|+|+|.+++........
T Consensus 131 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 131 LLP-PAKALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred cCC-HHHHHHHHHHhcCCCcEEEEEeccCCCC
Confidence 444 7889999999999999999987765543
No 232
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.33 E-value=2e-06 Score=71.27 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=79.6
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccch-
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM- 209 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~- 209 (357)
..+.|+|+|+|.++...++. ..+|++++.+|...+.|.+|..-.|..|++++.+|+.+..+ ...|+|+|-..=..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 68999999999999988876 67999999999999999999888888899999999998876 568999885421111
Q ss_pred -hhHHHHHHHHHHhcccCceEEE
Q 018346 210 -KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 210 -~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+..-..+..+...|+.++.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 3345567777778898888754
No 233
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.28 E-value=2.3e-06 Score=77.88 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 193 (357)
+++++++.+...++..++|.--|.|+.+..+++.+|+++++|+|.++.+++.|+++..... +++.++.+++.++..
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHH
Confidence 4566777777888899999999999999999999988999999999999999988776543 389999999887531
Q ss_pred ---c-cCccEEEEcc
Q 018346 194 ---E-ASYDRIYSIE 204 (357)
Q Consensus 194 ---~-~~fD~Ii~~~ 204 (357)
. .++|-|+...
T Consensus 87 ~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 87 ELNGINKVDGILFDL 101 (310)
T ss_dssp HTTTTS-EEEEEEE-
T ss_pred HccCCCccCEEEEcc
Confidence 1 4688888765
No 234
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.26 E-value=1.4e-06 Score=77.50 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=71.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC---------------------------C-CC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------------------------L-QN 180 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~---------------------------~-~~ 180 (357)
++.++||||||.-..-..-+..+ -.+++..|.++...+..++.++..+ + ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 56799999999854432222221 2479999999998887766553322 0 01
Q ss_pred e-EEEEeccCCCcc-------ccCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 181 V-EIIVADISTFEM-------EASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 181 v-~~~~~d~~~~~~-------~~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
| .++.+|+...++ +.+||+|++..+++.. +.+.+.++++.++|||||.|++...-
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 3 477889887432 1349999999998766 56888999999999999999997653
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.3e-05 Score=68.48 Aligned_cols=111 Identities=21% Similarity=0.177 Sum_probs=79.8
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-
Q 018346 117 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 193 (357)
Q Consensus 117 ~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 193 (357)
.+.++.++..+ .++.+|+|||+..|+.+..+++.. ++..|+|+|+.|-. ...+|.++++|++....
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTL 100 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHH
Confidence 44455555544 578999999999999999999886 33569999997751 22479999999987431
Q ss_pred -------c-cCccEEEEcccc--------cch---hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 194 -------E-ASYDRIYSIEMF--------EHM---KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 194 -------~-~~fD~Ii~~~~~--------~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
. .++|+|+|...- +|. .-....++-+..+|+|||.+++-.+....
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 1 347999987633 222 12345667778899999999998775543
No 236
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.25 E-value=1.8e-05 Score=68.01 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=76.5
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~f 197 (357)
+...+.++.+||-+|.++|.....++.-. |...|++|+.|+......-..++.. +||--+..|+..... -+..
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--E
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccc
Confidence 34567899999999999999999998765 4789999999997766555544444 389999999986321 1679
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|++.-. .-+..+-++.++...||+||.+++..-
T Consensus 145 DvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 145 DVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 99998644 223445677888899999999998764
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.23 E-value=4.6e-06 Score=67.98 Aligned_cols=60 Identities=28% Similarity=0.414 Sum_probs=54.0
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~ 191 (357)
+|+|+|||.|..+..+++..|..+|+++|+++.+.+.++++++.++.++++++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999999988889999999999999999999988877788888877653
No 238
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=2.8e-05 Score=69.69 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 193 (357)
++.++++.+.+.++...+|.--|.|+.+..+.+.+|+ .+++|+|-++.+++.|++.....+- ++++++.++.++..
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~-r~~~v~~~F~~l~~~l 89 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG-RVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC-cEEEEeCcHHHHHHHH
Confidence 5677888888888999999999999999999999864 5799999999999999999887663 89999998776421
Q ss_pred ---c-cCccEEEEc
Q 018346 194 ---E-ASYDRIYSI 203 (357)
Q Consensus 194 ---~-~~fD~Ii~~ 203 (357)
. +++|-|+..
T Consensus 90 ~~~~i~~vDGiL~D 103 (314)
T COG0275 90 KELGIGKVDGILLD 103 (314)
T ss_pred HhcCCCceeEEEEe
Confidence 1 456666654
No 239
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.18 E-value=1.8e-05 Score=68.40 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=69.4
Q ss_pred EEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEEcccccchh
Q 018346 133 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 210 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~ 210 (357)
|.||||-.|.++++|.++....+++++|+++.-++.|++++...|+ ++|++..+|-.+...+ +..|.|+..++=. .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--E 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H--H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH--H
Confidence 6899999999999999986555899999999999999999999987 4899999997653223 3479888876522 2
Q ss_pred hHHHHHHHHHHhcccCceEEEEe
Q 018346 211 NYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 211 ~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....+++.....++....+++..
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEeC
Confidence 34566666666665555666643
No 240
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=1.6e-06 Score=76.85 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=79.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
..+..++|+|||.|.... ..|.+.++|.|++...+..+++. +. ....+|+..++.. .+||.+++..+
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 357899999999998753 33788999999999877666542 33 5778899888766 78999999999
Q ss_pred ccchh---hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 206 FEHMK---NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 206 ~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+. -...+++++.+.|+|||...+.....
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 99993 35678999999999999988866554
No 241
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.18 E-value=5.2e-06 Score=71.07 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc----cCccEEEEccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 205 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~Ii~~~~ 205 (357)
..++|||||=+......- .+-..|+.||+++. .-.+.+.|+.+.|.+ ++||+|+++.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 379999999765544332 22457999999874 234477888776542 78999999999
Q ss_pred ccchhhH---HHHHHHHHHhcccCce-----EEEEeccC
Q 018346 206 FEHMKNY---QNLLKKISKWMKEDTL-----LFVHHFCH 236 (357)
Q Consensus 206 ~~~~~~~---~~~l~~~~~~LkpgG~-----l~~~~~~~ 236 (357)
+.+++++ -+.++++.++|+|+|. +++..|.+
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 9999765 4589999999999999 88877754
No 242
>PRK10742 putative methyltransferase; Provisional
Probab=98.17 E-value=9.3e-06 Score=71.39 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=71.7
Q ss_pred HHHHHcCCCCCC--EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc------C--C-CCeEEEEecc
Q 018346 120 LYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------E--L-QNVEIIVADI 188 (357)
Q Consensus 120 ~l~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~------~--~-~~v~~~~~d~ 188 (357)
.+++..+++++. +|||+-+|+|..+..++.. +++|+++|-|+......+.++... + + .+++++.+|.
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 355556777776 9999999999999999988 889999999999999988888774 2 2 4789999998
Q ss_pred CCCcc--ccCccEEEEcccccch
Q 018346 189 STFEM--EASYDRIYSIEMFEHM 209 (357)
Q Consensus 189 ~~~~~--~~~fD~Ii~~~~~~~~ 209 (357)
.+... ..+||+|+..+++.+-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 76532 2579999999998664
No 243
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=1.3e-06 Score=70.61 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=80.8
Q ss_pred HHHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc---CCCCeEEEEeccCCCc--cc
Q 018346 121 YCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---ELQNVEIIVADISTFE--ME 194 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~---~~~~v~~~~~d~~~~~--~~ 194 (357)
+++..+.-.+.+||++|.| +|--++.+|...|...|..+|-+.+.++..++-...+ +++++..+.-+..... ..
T Consensus 21 ~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~e 100 (201)
T KOG3201|consen 21 ILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQE 100 (201)
T ss_pred HHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHh
Confidence 4443334457899999999 4555666676678889999999999988777655443 2233433333332211 11
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..||+|++..++-.-+....+++.+..+|+|.|..++..|-+
T Consensus 101 q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 589999999987555667788999999999999988766643
No 244
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.14 E-value=0.00013 Score=63.58 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=69.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-ccc--cC
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EME--AS 196 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~--~~ 196 (357)
.+.++..+ .|++||-+|=.. ..+++++...+..+|+.+|+++..++..++.+++.|+ +|+.+..|+... |.. ++
T Consensus 36 ~~~~~gdL-~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~ 112 (243)
T PF01861_consen 36 LMAERGDL-EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGK 112 (243)
T ss_dssp HHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-
T ss_pred HHHhcCcc-cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcC
Confidence 34444333 578999998433 4455555555578999999999999999999999999 599999999874 322 88
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCc-eEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDT-LLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~ 233 (357)
||++++.++. ..+...-++.+....||..| ..++..
T Consensus 113 fD~f~TDPPy-T~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 113 FDVFFTDPPY-TPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp BSEEEE---S-SHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred CCEEEeCCCC-CHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 9999999986 45677889999999998766 544433
No 245
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.14 E-value=4.1e-05 Score=68.81 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=66.2
Q ss_pred CCEEEEECCcccHHH-HHHHHH-CCCcEEEEEcCCHHHHHHHHHHHH-HcCC-CCeEEEEeccCCCccc-cCccEEEEcc
Q 018346 130 GHTVLDVGCGWGSLS-LYIAQK-YSNCKITGICNSKTQKEFIEEQCR-VLEL-QNVEIIVADISTFEME-ASYDRIYSIE 204 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~-~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~-~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~ 204 (357)
+.+|+=||||.=-++ +.+++. .++..|+++|+++++++.+++.+. ..++ .++.|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999965544 445544 367899999999999999998877 3444 3899999999876544 6899998776
Q ss_pred cccc-hhhHHHHHHHHHHhcccCceEEEE
Q 018346 205 MFEH-MKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 205 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.... -.+..+++..+.+.++||+.+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 5532 257789999999999999998885
No 246
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.13 E-value=4.7e-05 Score=68.25 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=77.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH---cC----------------------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LE---------------------------- 177 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~---~~---------------------------- 177 (357)
...+||--|||.|.++..+|.. +..+.|.|.|--|+-...-.+.. .+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4679999999999999999988 88999999999886543332111 00
Q ss_pred ---------CCCeEEEEeccCCCccc----cCccEEEEcccccchhhHHHHHHHHHHhcccCceEE
Q 018346 178 ---------LQNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 178 ---------~~~v~~~~~d~~~~~~~----~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
..++....+|+.+.-.+ ++||+|++..-++..++.-..++.+.++|||||..+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 12466777787765322 589999999888888899999999999999999543
No 247
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.12 E-value=2.3e-05 Score=71.93 Aligned_cols=86 Identities=15% Similarity=0.211 Sum_probs=66.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~Ii~~~~~ 206 (357)
.++.++|||||++|+.+..++++ +++|++||.++- ...+... ++|.....|.....+ .+.+|.++|..+-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l-----~~~L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmve 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM-----AQSLMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMVE 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc-----CHhhhCC--CCEEEEeccCcccCCCCCCCCEEEEeccc
Confidence 57899999999999999999988 779999996653 1222222 389999999877654 4789999997663
Q ss_pred cchhhHHHHHHHHHHhcccC
Q 018346 207 EHMKNYQNLLKKISKWMKED 226 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~Lkpg 226 (357)
.+.++.+.+.+.|..|
T Consensus 281 ----~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 ----KPARVAELMAQWLVNG 296 (357)
T ss_pred ----CHHHHHHHHHHHHhcC
Confidence 4667777777777555
No 248
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.11 E-value=2.8e-05 Score=72.37 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=92.5
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---ccCccEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRI 200 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~I 200 (357)
+..+++.+|||+++..|+-+.++|....+ ..|++.|.+..-+...+.|+...|+++......|..+++. +++||.|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 34578999999999999999888876533 5899999999999999999999999888889999887652 2589999
Q ss_pred EEcccccc--h--------------------hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFEH--M--------------------KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~~--~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+...+-.+ + .-.++++..+.++++|||+|+.++.+..
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 98776544 1 1146788889999999999999876653
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.07 E-value=2.5e-06 Score=65.83 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=44.4
Q ss_pred EEECCcccHHHHHHHHHCCC---cEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc--cc-cCccEEEEcccc
Q 018346 134 LDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEMF 206 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~---~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~-~~fD~Ii~~~~~ 206 (357)
||+|+..|..+..+++..+. .+++++|..+. .+.+++.+++.++ ++++++.+|..+.. .. +++|+|+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999999998876533 27999999985 3334444444444 38999999987642 22 68999998864
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|..+.....++.+.+.|+|||++++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 223456677888999999999998854
No 250
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=4.4e-05 Score=66.15 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=78.1
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCccc
Q 018346 117 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME 194 (357)
Q Consensus 117 ~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~~ 194 (357)
.+...++...+ .++..+||+|+.||+++..+.++. ..+|+|+|....++..--++- ++| .+...|+..+...
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d-----~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRND-----PRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcC-----CcEEEEecCChhhCCHH
Confidence 44455565555 368899999999999999999884 469999999988765443321 243 3444455554322
Q ss_pred ---cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 ---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ---~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|+++|.-++. ....++..+..+++|+|-++.-.
T Consensus 140 ~~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 140 DFTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred HcccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence 5689999988776 45788999999999999877643
No 251
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.93 E-value=9.5e-05 Score=62.86 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=78.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~Ii~~~ 204 (357)
.++.+||.+|-|-|.+...+.+.-|. +-+-++..|+.++..+...-... .||..+.+-+.+.. +.+.||-|+-..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeEeec
Confidence 46889999999999999988877554 55678999998877766543222 37888888766642 236799998876
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEE
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
--++.++...+.+.+.++|||+|++-.
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 556778889999999999999998644
No 252
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00017 Score=60.79 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=80.8
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCccE
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDR 199 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~ 199 (357)
..++.++.+||-+|..+|....+++.-.+...+++|+.|+......-..+.+. +|+--+..|+..... -+..|+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccE
Confidence 45678999999999999999999998876678999999998876665555543 388889999886321 167899
Q ss_pred EEEcccccchhhH-HHHHHHHHHhcccCceEEEEec
Q 018346 200 IYSIEMFEHMKNY-QNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 200 Ii~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+..-.- ++. +-+..++...||+||.+++..=
T Consensus 149 iy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 149 IYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred EEEecCC---chHHHHHHHHHHHhcccCCeEEEEEE
Confidence 8875321 333 4457778999999998777654
No 253
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.87 E-value=0.00014 Score=66.57 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=81.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHH--Hc--C-C--CCeEEEEeccCCCccc--cCc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCR--VL--E-L--QNVEIIVADISTFEME--ASY 197 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~--~~--~-~--~~v~~~~~d~~~~~~~--~~f 197 (357)
+...+||-+|.|.|--+..+.+ +| -.+++-+|++|++++.++++.. .. | . ++++++..|..++... +.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3557899999999999999884 67 4599999999999999985432 21 1 1 3899999998886433 789
Q ss_pred cEEEEcccccchh-----hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|.||...+=..-+ ...++..-+.+.|+++|.++++..++
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9999865321111 23567788899999999999976544
No 254
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.85 E-value=6e-05 Score=63.45 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=74.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-------CCCeEEEEeccCCCccc----cCc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------LQNVEIIVADISTFEME----ASY 197 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~----~~f 197 (357)
....+.|||||-|.+.+.|+..+|+.-+.|.+|-...-++.++++.... ..|+.+...+.....+. ++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3467999999999999999999999999999999888888888876654 34677777666554221 222
Q ss_pred cEEEEcccccchhh--------HHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+-.+...+--|+.. ...++.+..-+|++||.++..+-
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 22222222223211 24567788889999999988654
No 255
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.84 E-value=1.7e-05 Score=66.85 Aligned_cols=96 Identities=19% Similarity=0.247 Sum_probs=72.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
.+.++||+|+|.|.++..++..+ .+|++.++|..|....++ .+. ||-- ..+..+. .-+||+|.|-..++-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~y-nVl~-~~ew~~t--~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNY-NVLT-EIEWLQT--DVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCC-ceee-ehhhhhc--CceeehHHHHHHHHh
Confidence 45799999999999999988764 479999999998665544 333 3211 1122111 136999999999887
Q ss_pred hhhHHHHHHHHHHhccc-CceEEEEec
Q 018346 209 MKNYQNLLKKISKWMKE-DTLLFVHHF 234 (357)
Q Consensus 209 ~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 234 (357)
-.++-++++.++.+|+| +|++++...
T Consensus 182 c~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred hcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 77889999999999999 899887654
No 256
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.77 E-value=0.00029 Score=60.03 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcC----------------
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLE---------------- 177 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~---------------- 177 (357)
++++..+..+.-..+.+++|-+||+|.+.-.+.-..+. ..|+|.|+++++++.|++|..-..
T Consensus 38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 34444444444456789999999999988877765433 489999999999999998763210
Q ss_pred --------------------------CCCeEEEEeccCCCcc------ccCccEEEEcccccchh---------hHHHHH
Q 018346 178 --------------------------LQNVEIIVADISTFEM------EASYDRIYSIEMFEHMK---------NYQNLL 216 (357)
Q Consensus 178 --------------------------~~~v~~~~~d~~~~~~------~~~fD~Ii~~~~~~~~~---------~~~~~l 216 (357)
.......+.|+++... ....|+|+...++..+. ....++
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml 197 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML 197 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence 1246678888887321 13479999999886652 256789
Q ss_pred HHHHHhcccCceEEE
Q 018346 217 KKISKWMKEDTLLFV 231 (357)
Q Consensus 217 ~~~~~~LkpgG~l~~ 231 (357)
..+.++|.+++++.+
T Consensus 198 ~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 198 NSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHCCS-TT-EEEE
T ss_pred HHHHhhCCCCcEEEE
Confidence 999999955555555
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.74 E-value=0.00014 Score=63.92 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
.++.+... +.++.+|+|||||.--++.......|++.++|+||+..+++.........+. +.++...|+...+++..
T Consensus 95 fY~~if~~--~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~ 171 (251)
T PF07091_consen 95 FYDEIFGR--IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEP 171 (251)
T ss_dssp HHHHHCCC--S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSE
T ss_pred HHHHHHhc--CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCC
Confidence 44444432 2357899999999999998887776788999999999999999999888887 78888889887665577
Q ss_pred ccEEEEcccccchh
Q 018346 197 YDRIYSIEMFEHMK 210 (357)
Q Consensus 197 fD~Ii~~~~~~~~~ 210 (357)
.|+.+.-=+++-++
T Consensus 172 ~DlaLllK~lp~le 185 (251)
T PF07091_consen 172 ADLALLLKTLPCLE 185 (251)
T ss_dssp ESEEEEET-HHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 99999877776664
No 258
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.65 E-value=0.00059 Score=67.09 Aligned_cols=123 Identities=17% Similarity=0.131 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC----CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF 191 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~ 191 (357)
..+.+++.+...+..+|+|..||+|++.....+... ...++|.|+++.....++.|+--.|++ ++....+|...-
T Consensus 174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~ 253 (489)
T COG0286 174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN 253 (489)
T ss_pred HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC
Confidence 444555556556777999999999998877765541 267999999999999999999888885 355666665443
Q ss_pred cc-----c-cCccEEEEcccccch-------------------------hhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 192 EM-----E-ASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 192 ~~-----~-~~fD~Ii~~~~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+. . ..||.|++|+++... .....++..+...|+|||+..+..+..-..
T Consensus 254 ~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlf 332 (489)
T COG0286 254 PKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLF 332 (489)
T ss_pred CcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCc
Confidence 21 1 569999999998410 012678999999999999877776655433
No 259
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.63 E-value=0.00016 Score=60.50 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=76.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHH----HHHHHH--HHHcCCCCeEEEEeccCCCcc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQK----EFIEEQ--CRVLELQNVEIIVADISTFEM 193 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l----~~a~~~--~~~~~~~~v~~~~~d~~~~~~ 193 (357)
++...+++++.+|+|+=.|.|.++..++... |...|++.-..+... +..+.+ ..+....|++.+-.+...+..
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~ 119 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA 119 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC
Confidence 4445677899999999999999999998765 555788765433211 111111 111222356666666555554
Q ss_pred ccCccEEEEcccccch-------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 194 EASYDRIYSIEMFEHM-------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++..|+++.+..+|.+ .....+...+.+.|||||++++++.
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 4678888877666544 2356788899999999999998654
No 260
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.61 E-value=0.0011 Score=56.95 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc-cccCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-MEASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~-~~~~fD~Ii~~~~~ 206 (357)
.+.++.||||-.|.+..+|.+..+...+++.|+++..++.|.+++...++ ++++...+|..... ....+|+|+..++=
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 55669999999999999999998888999999999999999999999987 48888999886532 22579998887653
Q ss_pred cchhhHHHHHHHHHHhcccCceEEE
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
. .-...++++-...|+.=-++++
T Consensus 96 G--~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 96 G--TLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred H--HHHHHHHHHhhhhhcCcceEEE
Confidence 2 2345667776666664445555
No 261
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.52 E-value=0.00074 Score=54.26 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=59.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc--c-cCccEEEEcccccc-----h----hhHHHHHHHHHH
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM--E-ASYDRIYSIEMFEH-----M----KNYQNLLKKISK 221 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~-~~fD~Ii~~~~~~~-----~----~~~~~~l~~~~~ 221 (357)
+|+|+||-+++++.++++..+.+.. +++++..+-..+.. + +++|+++.|..+-- + ......++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 6899999999999999999999874 79999988766542 2 37999999864411 1 234668899999
Q ss_pred hcccCceEEEEecc
Q 018346 222 WMKEDTLLFVHHFC 235 (357)
Q Consensus 222 ~LkpgG~l~~~~~~ 235 (357)
+|+|||.+.+....
T Consensus 81 lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 81 LLKPGGIITIVVYP 94 (140)
T ss_dssp HEEEEEEEEEEE--
T ss_pred hhccCCEEEEEEeC
Confidence 99999999887653
No 262
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00016 Score=62.10 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=57.3
Q ss_pred CCCEEEEECCcccHHHHHHHH-HCCCcEEEEEcCCHHHHHHHHHHHHHc-CCC-CeEEEEeccCCCcc------ccCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIVADISTFEM------EASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~-~~p~~~v~~vD~s~~~l~~a~~~~~~~-~~~-~v~~~~~d~~~~~~------~~~fD~ 199 (357)
++.++||||.|.-++=-.+-- .+ +.+.+|.|+++.+++.|+..+..+ ++. .|+.....-.+..+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 567899999988765433322 23 789999999999999999998877 443 45555443222111 167999
Q ss_pred EEEcccccch
Q 018346 200 IYSIEMFEHM 209 (357)
Q Consensus 200 Ii~~~~~~~~ 209 (357)
+.||+++|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999999865
No 263
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.42 E-value=0.0015 Score=57.80 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=75.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CC-CeEEEEeccCCCcc----ccC-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQ-NVEIIVADISTFEM----EAS-Y 197 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~-~v~~~~~d~~~~~~----~~~-f 197 (357)
...+||++|+|+|-.++..+... +++|+..|+.. .++....+...++ .. .+.....++...+. ... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 45689999999998887777654 78999999844 4444444432222 11 45555555554221 134 8
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|+|++..++.....+..++..+...|..+|.+++...-++
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999998888888899999999999997777666444
No 264
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0021 Score=61.48 Aligned_cols=102 Identities=18% Similarity=0.281 Sum_probs=81.4
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccch
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 209 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~ 209 (357)
.++|-+|||.-.++..+-+.+ ...|+.+|+|+..++.+...-. ...+-..+...|+....++ ++||+|+.-+.++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 399999999998888887663 3579999999999887766543 2223688999999988777 899999999988876
Q ss_pred -h---------hHHHHHHHHHHhcccCceEEEEec
Q 018346 210 -K---------NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 210 -~---------~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. .....+.+++++|+|||+.+..+.
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 1 134567889999999999877666
No 265
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.41 E-value=0.00034 Score=63.58 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=84.6
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHH-------HHHHHHHHcCC-C-CeEEEEeccCCCccc-
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE-------FIEEQCRVLEL-Q-NVEIIVADISTFEME- 194 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~-------~a~~~~~~~~~-~-~v~~~~~d~~~~~~~- 194 (357)
....+|.-|+|--.|||++....+.- |+.|+|.||+-.++. ..+.|+++.|. + -+.++.+|....+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 44578999999999999999888855 899999999998876 35677888875 2 467788898875543
Q ss_pred -cCccEEEEccccc------------------------chh---------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 -ASYDRIYSIEMFE------------------------HMK---------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 -~~fD~Ii~~~~~~------------------------~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..||.|+|.+++. |.+ -...++.-..+.|..||++++-.|+.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 5799999999871 111 13456677788999999999876643
No 266
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.0015 Score=54.57 Aligned_cols=100 Identities=18% Similarity=0.135 Sum_probs=67.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCc--------cc-cC
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFE--------ME-AS 196 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~--------~~-~~ 196 (357)
.++.+|||+||..|..+....++. |...|.|||+-.- .....++++++ |+.+.. .+ .+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 578999999999999999888776 8899999998432 11224556666 666531 12 56
Q ss_pred ccEEEEcccccc----hhhHHH-------HHHHHHHhcccCceEEEEeccCCC
Q 018346 197 YDRIYSIEMFEH----MKNYQN-------LLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 197 fD~Ii~~~~~~~----~~~~~~-------~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.|+|+|...-.. +.|... ++.-....++|+|.++.-......
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 899998753211 123333 333345567899999998775543
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.30 E-value=0.0014 Score=56.25 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=57.2
Q ss_pred CCCEEEEECCcccHHHHHHHHH---C-CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc---------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--------- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~---~-p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~--------- 194 (357)
++..|+|+|.-.|+.++..|.. + +.++|+|+|++...... +..+.... ++|+++++|..+...-
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 5689999999999988887653 3 56899999996543221 11122222 4899999998764210
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
....+|+. .+-|...+..+.++....+++||+++++++..
T Consensus 110 ~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 110 PHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp -SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred CCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 12234443 33333356677888899999999999997654
No 268
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0013 Score=60.80 Aligned_cols=103 Identities=21% Similarity=0.157 Sum_probs=80.9
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEccccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 207 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~ 207 (357)
..+|+|.=||+|.=++.++...+..+|+.-|+||.+++.+++|+..+...+...+..|...+... ..||+|=..+ +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP-F- 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP-F- 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCC-C-
Confidence 67999999999999999998886669999999999999999999988433566666787765433 6789765443 3
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..+..+++.+.+.++.||.+.+.....
T Consensus 131 --GSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 131 --GSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred --CCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 245667888888889999998865433
No 269
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.27 E-value=0.0011 Score=62.79 Aligned_cols=103 Identities=20% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCc--cccCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE--MEASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~--~~~~fD~Ii~~ 203 (357)
.+.+|||.=+|+|.=++..+.+.++ .+|++-|+|+++++.+++|++.++++ .+++.+.|+..+- ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4579999999999999999988644 58999999999999999999999985 4888888987753 23779987665
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+ + ..+..+++.+.+.++.||.|.+....
T Consensus 129 P-f---GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 P-F---GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp --S---S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred C-C---CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 3 2 35577899999999999999996554
No 270
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0003 Score=56.71 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=38.6
Q ss_pred cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 195 ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
++.|+|++..+++|+ +.-..+++++++.|||||++-+..|.-..
T Consensus 46 ns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 46 NSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 789999999999999 55677899999999999999998876543
No 271
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0045 Score=57.26 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=81.0
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCC----cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSN----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 193 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~----~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 193 (357)
+++.++.+|||+++..|+-+..+.+.... ..|++-|.++.-+...+.........++.+...|+...+.
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 46789999999999999999888876422 3899999999988887777755444455555555543321
Q ss_pred --c-cCccEEEEcccccc----------------------h-hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 194 --E-ASYDRIYSIEMFEH----------------------M-KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 194 --~-~~fD~Ii~~~~~~~----------------------~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
. ..||-|++.-+-.+ + .-...++.+..++||+||.++.++-+-.
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 1 46999998654311 0 1135688899999999999998876543
No 272
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0018 Score=59.12 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=74.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC----CCc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS----TFE 192 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~----~~~ 192 (357)
+..+-...+.-.+.+|||+|.|.|.-+.++-..+|.. .++.++.|+..-+...............+...|+. +++
T Consensus 102 L~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 102 LDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred HHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC
Confidence 3333333333356789999999998887777777764 67788888875554444333322222223333332 233
Q ss_pred cccCccEEEEcccccch---hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 193 MEASYDRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
....|++|+...-+-+. ......++.+..++.|||.+++..++.+.
T Consensus 182 ~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 182 AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 33556766654433333 12344789999999999999998876543
No 273
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.0039 Score=49.95 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 195 (357)
.++.++..+.-.+..+.+|+|+|.|.+....++.. -..-+|++++|-.+.+++-.+-..|.. ...|..-|+......
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~- 137 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR- 137 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-
Confidence 44455666666666799999999999999888773 357899999999999998887777763 788999998876543
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.|..|+...+-.-+++ +-.++..-+..|..++.-
T Consensus 138 dy~~vviFgaes~m~d---Le~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 138 DYRNVVIFGAESVMPD---LEDKLRTELPANTRVVAC 171 (199)
T ss_pred ccceEEEeehHHHHhh---hHHHHHhhCcCCCeEEEE
Confidence 3444444333222232 334455456666666553
No 274
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.07 E-value=0.13 Score=48.12 Aligned_cols=113 Identities=11% Similarity=0.072 Sum_probs=61.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHH--------C--------CCcEEEEEcCCHHHHHHHHHHHHHc-----CCCC--eE
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQK--------Y--------SNCKITGICNSKTQKEFIEEQCRVL-----ELQN--VE 182 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~--------~--------p~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~--v~ 182 (357)
......+|+|+||.+|..++.+... + |..+|+--|+-..-....-+.+... ...+ +.
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3456679999999999988776432 1 2257888886443222221211111 0112 33
Q ss_pred EEEeccCCCccc-cCccEEEEcccccchhh---------------------------------------HHHHHHHHHHh
Q 018346 183 IIVADISTFEME-ASYDRIYSIEMFEHMKN---------------------------------------YQNLLKKISKW 222 (357)
Q Consensus 183 ~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~---------------------------------------~~~~l~~~~~~ 222 (357)
-+-+.+..-.++ ++.|+++|..++||+.. ...+|+.=.+-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 344555553334 88999999998877611 12233333455
Q ss_pred cccCceEEEEeccCCC
Q 018346 223 MKEDTLLFVHHFCHKT 238 (357)
Q Consensus 223 LkpgG~l~~~~~~~~~ 238 (357)
|+|||++++..++...
T Consensus 173 Lv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEEE-ST
T ss_pred eccCcEEEEEEeeccc
Confidence 8899999999998877
No 275
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.00 E-value=0.0033 Score=55.14 Aligned_cols=86 Identities=24% Similarity=0.434 Sum_probs=50.7
Q ss_pred HHHHcCCCCC--CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHH---HHHcC-C-----CCeEEEEeccC
Q 018346 121 YCERSRLEDG--HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ---CRVLE-L-----QNVEIIVADIS 189 (357)
Q Consensus 121 l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~---~~~~~-~-----~~v~~~~~d~~ 189 (357)
+++..++.++ .+|||.-+|.|.-+..++.. |++|+++|-||-.....+.- +.... . .+++++.+|..
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 4455566655 48999999999999999876 88999999999765544433 22211 1 37999999988
Q ss_pred CCcc--ccCccEEEEcccccc
Q 018346 190 TFEM--EASYDRIYSIEMFEH 208 (357)
Q Consensus 190 ~~~~--~~~fD~Ii~~~~~~~ 208 (357)
+... .++||+|+..++|.+
T Consensus 143 ~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 143 EYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CHCCCHSS--SEEEE--S---
T ss_pred HHHhhcCCCCCEEEECCCCCC
Confidence 7422 378999999999865
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.97 E-value=0.0089 Score=55.40 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=69.0
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec-cCCCc-cccCccE
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-ISTFE-MEASYDR 199 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d-~~~~~-~~~~fD~ 199 (357)
+..+..++.+|+=+|+| .|.+++.+|+.. +++|+++|.|++-.+.|++. |.+ .++... ..... ..+.||+
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL----GAD--HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhhHHhHhhCcE
Confidence 34567789999999887 567899999877 79999999999977776653 432 223322 11111 1144999
Q ss_pred EEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 200 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+..-+ ...+....+.|++||.+++.-..
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 998654 34567777899999999886443
No 277
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.96 E-value=0.003 Score=54.83 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=74.3
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---c-cCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~f 197 (357)
+.+.++++.+||-+|+++|.....+..-. |..-|++++.|+..=.....-+++. +||.-+.-|+..... . ...
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeE
Confidence 34557899999999999999888887654 7779999999886533222222211 377778888876321 1 567
Q ss_pred cEEEEcccccchhhH-HHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMKNY-QNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|++.-+- ++. +.+.-++...||+||-+++++-.
T Consensus 228 DvIFaDvaq---pdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 228 DVIFADVAQ---PDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred EEEeccCCC---chhhhhhhhhhhhhhccCCeEEEEEec
Confidence 888875432 233 33455678899999999987653
No 278
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.0049 Score=59.33 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=93.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEECCcccHHHHHHHHH---C-CCcEEEEEcCCHHHHHHHHHHH
Q 018346 101 CYFSDASKTLEDAEKAMLELYCERSRLED---GHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQC 173 (357)
Q Consensus 101 ~~f~~~~~~l~~~~~~~l~~l~~~~~~~~---~~~vLDiGcG~G~~~~~la~~---~-p~~~v~~vD~s~~~l~~a~~~~ 173 (357)
..|+.+.......+.+.+..+.++.+... ...|+-+|+|-|-+.....+. . ...++++++-+|.++-..+. .
T Consensus 336 etFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~ 414 (649)
T KOG0822|consen 336 ETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-R 414 (649)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-h
Confidence 45666666777888888888888865433 346788899999877665432 1 24689999999998876654 2
Q ss_pred HHcCC-CCeEEEEeccCCCccc-cCccEEEEcccccch---hhHHHHHHHHHHhcccCceEEE
Q 018346 174 RVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 174 ~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
....- ++|+++..|+..++.+ .+.|+++|-. +..+ +-.++.+..+.+.|||+|+.+=
T Consensus 415 n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 415 NFECWDNRVTIISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhcCeeEEEeccccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 22222 3899999999998876 7899888743 2222 3357889999999999987544
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.77 E-value=0.014 Score=57.44 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=68.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-----------C--c
Q 018346 127 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----------F--E 192 (357)
Q Consensus 127 ~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-----------~--~ 192 (357)
..++.+|+=+|||. |..++..++.. ++.|+++|.+++.++.+++ .|. +++..|..+ . .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes----lGA---~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES----MGA---EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEEeccccccccccchhhhcchh
Confidence 34789999999995 66777788777 7899999999998776665 343 222211111 0 0
Q ss_pred ---------cc--cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 193 ---------ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 193 ---------~~--~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+ ..+|+||.......-+.+..+.+++.+.+||||+++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 3589999876654433344446999999999999877544
No 280
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.66 E-value=0.014 Score=52.81 Aligned_cols=117 Identities=17% Similarity=0.096 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHcCC----CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH---HHcC--------
Q 018346 113 AEKAMLELYCERSRL----EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLE-------- 177 (357)
Q Consensus 113 ~~~~~l~~l~~~~~~----~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~---~~~~-------- 177 (357)
.....++.+-...+. ....+||--|||.|.++..|+.. +..+-|-+.|--|+-...=-+ +..+
T Consensus 130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfI 207 (369)
T KOG2798|consen 130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFI 207 (369)
T ss_pred hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence 334445544443332 23568999999999999999988 445566677766653221111 1000
Q ss_pred -----------------C------------CCeEEEEeccCCCccc----cCccEEEEcccccchhhHHHHHHHHHHhcc
Q 018346 178 -----------------L------------QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMK 224 (357)
Q Consensus 178 -----------------~------------~~v~~~~~d~~~~~~~----~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lk 224 (357)
+ .......+|+.+.-.. +.||+|+...-++.-.+.-..++.+.++||
T Consensus 208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILK 287 (369)
T ss_pred eccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhcc
Confidence 0 0112234565553221 469999999877777888999999999999
Q ss_pred cCceEEE
Q 018346 225 EDTLLFV 231 (357)
Q Consensus 225 pgG~l~~ 231 (357)
|||+.+=
T Consensus 288 ~GGvWiN 294 (369)
T KOG2798|consen 288 PGGVWIN 294 (369)
T ss_pred CCcEEEe
Confidence 9998754
No 281
>PHA01634 hypothetical protein
Probab=96.53 E-value=0.019 Score=44.90 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=50.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~ 202 (357)
.+++|+|||.+.|..+++++.+. ...|+++++++...+..+++.+.+.+ +... ... +++.. +.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~---eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKG---EWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhheeeecee-ecc---cccccCCCcceEEE
Confidence 57899999999999999999874 45899999999999999888876643 2111 111 22223 67887665
No 282
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.47 E-value=0.017 Score=52.54 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=76.4
Q ss_pred HHHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc--CCC---c--
Q 018346 121 YCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI--STF---E-- 192 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~~---~-- 192 (357)
.+++.+.+.+.+||=+|+| .|-.+...|+.+...+|+.+|+++..++.|++ .|.+.+....... .++ .
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHh
Confidence 4566778899999999999 47778888888756699999999999999887 3432222222211 110 0
Q ss_pred -cc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCc
Q 018346 193 -ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 241 (357)
Q Consensus 193 -~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 241 (357)
.. ..+|+.+..... ...++.....+++||.+++.....+...+
T Consensus 237 ~~g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~~~f 281 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEEIQF 281 (354)
T ss_pred hccccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCcccc
Confidence 01 348888876544 44566678889999998887776655443
No 283
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.014 Score=52.43 Aligned_cols=108 Identities=16% Similarity=0.097 Sum_probs=81.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHc--CC--CCeEEEEeccCCCc---cccCc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE---MEASY 197 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~--~~--~~v~~~~~d~~~~~---~~~~f 197 (357)
.+.++++||-||.|.|......+++ +. ..+.-+|++...++..++..... |. ++|..+-+|...+. ..++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 3456789999999999999988877 33 37899999999999988877654 22 47999999876542 13789
Q ss_pred cEEEEccc--c-cch-hhHHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEM--F-EHM-KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~--~-~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+.... . ... ...+.++..+.+.|||||+++...-
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 99996432 1 111 2346788889999999999988643
No 284
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.21 E-value=0.089 Score=49.87 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=63.7
Q ss_pred CCEEEEECCcccHHHHHHHH--------H-------CCCcEEEEEcCCHHHHHHHHHHHHH--------------cCCCC
Q 018346 130 GHTVLDVGCGWGSLSLYIAQ--------K-------YSNCKITGICNSKTQKEFIEEQCRV--------------LELQN 180 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~--------~-------~p~~~v~~vD~s~~~l~~a~~~~~~--------------~~~~~ 180 (357)
..+|+|+|||+|..++.+.. + .|..+|..-|+...-....-+.+.. .+. +
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~-~ 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH-R 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC-C
Confidence 56899999999987765532 1 2456788888654332222222211 111 1
Q ss_pred eEEEE---eccCCCccc-cCccEEEEcccccchhh--------------------------------------HHHHHHH
Q 018346 181 VEIIV---ADISTFEME-ASYDRIYSIEMFEHMKN--------------------------------------YQNLLKK 218 (357)
Q Consensus 181 v~~~~---~d~~~~~~~-~~fD~Ii~~~~~~~~~~--------------------------------------~~~~l~~ 218 (357)
.-|+. +.+..-.++ ++.++++|..++|++.. ...+++.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 333332233 78999999999888731 1223333
Q ss_pred HHHhcccCceEEEEeccCCC
Q 018346 219 ISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 219 ~~~~LkpgG~l~~~~~~~~~ 238 (357)
=.+-|.|||.+++...+++.
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 34568899999999988864
No 285
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.19 E-value=0.011 Score=55.63 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=51.1
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~ 191 (357)
.-|||||+|+|-++...++.. +-.|++++.-..|.+.|++-..++|. ++|+++.---.+.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 469999999999999998886 45799999999999999999999988 4888877655543
No 286
>PRK11524 putative methyltransferase; Provisional
Probab=96.04 E-value=0.025 Score=51.74 Aligned_cols=58 Identities=21% Similarity=0.095 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~ 175 (357)
..+++.++.... .+|..|||--||||..+.+..+. +-+.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 445666665543 57899999999999999887766 78999999999999999998753
No 287
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.02 E-value=0.0044 Score=55.42 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHH-HHH------HH----HcCCCCeEEEEe---ccCCCcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI-EEQ------CR----VLELQNVEIIVA---DISTFEM 193 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a-~~~------~~----~~~~~~v~~~~~---d~~~~~~ 193 (357)
..+++|||+|||+|-..+...... ...+...|.|.+.++.- -.+ +. +... -...... |.. ...
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~-~~~i~~s~l~dg~-~~~ 191 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHK-VDEILNSLLSDGV-FNH 191 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhccc-ceeccccccccch-hhh
Confidence 368999999999999999888773 37888999888876211 000 00 0000 1122222 221 111
Q ss_pred cc--CccEEEEcccccchhhHHHH-HHHHHHhcccCceEEE
Q 018346 194 EA--SYDRIYSIEMFEHMKNYQNL-LKKISKWMKEDTLLFV 231 (357)
Q Consensus 194 ~~--~fD~Ii~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~~ 231 (357)
.+ .||+|.+...+...+..+.+ ......+++++|.+++
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 23 79999998888777666666 5556677889998776
No 288
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.99 E-value=0.063 Score=47.79 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=75.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc---cCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~Ii~~~~ 205 (357)
.|+.|+=+| -.--.+++++-..-..+|..+||++..+....+-+.+.|++|+..+..|+....+. .+||+++..++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch
Confidence 467899998 44444555544332458999999999999999999999998899999999884332 78998887766
Q ss_pred ccchhhHHHHHHHHHHhcccC---ceEEE
Q 018346 206 FEHMKNYQNLLKKISKWMKED---TLLFV 231 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~Lkpg---G~l~~ 231 (357)
- .++..+.++.+=...||.- |++.+
T Consensus 231 e-Ti~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 231 E-TIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred h-hHHHHHHHHhccHHHhcCCCccceEee
Confidence 4 5667788888877788765 55444
No 289
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.95 E-value=0.022 Score=49.76 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~ 171 (357)
..+++.++... ..++..|||.-||+|..+.+..+. +-+.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 34566666554 357899999999999999988776 7899999999999988864
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.85 E-value=0.053 Score=51.81 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=69.1
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec-cCC----CccccC
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-IST----FEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d-~~~----~~~~~~ 196 (357)
....+.++.+||.+|||. |..+..+++.....+++++|.+++.++.+++.. +...+.....+ +.. ......
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCC
Confidence 345566788999999987 888899998873236999999999877776642 22111111111 111 111136
Q ss_pred ccEEEEccccc---------------chhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFE---------------HMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~---------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+..-.-+ -..+....+..+.++|+|+|.++...
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 89888753211 11234567888999999999998764
No 291
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.81 E-value=0.02 Score=52.10 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=53.1
Q ss_pred EEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---ccCccEEEEccccc
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIEMFE 207 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~Ii~~~~~~ 207 (357)
+|+|+.||.|..+..+... +. .+.++|+++.+++..+.|.... ++.+|+.++.. ...+|+|+..++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999999888876 44 5778999999988887776321 45667766532 24699999998775
Q ss_pred ch
Q 018346 208 HM 209 (357)
Q Consensus 208 ~~ 209 (357)
.+
T Consensus 74 ~f 75 (275)
T cd00315 74 PF 75 (275)
T ss_pred hh
Confidence 44
No 292
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.80 E-value=0.0082 Score=45.86 Aligned_cols=38 Identities=13% Similarity=0.416 Sum_probs=30.4
Q ss_pred CccEEEEcccccch------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+||+|+|-.+.-++ +....+++.+.+.|+|||.++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999998877555 447889999999999999999963
No 293
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.79 E-value=0.0057 Score=58.85 Aligned_cols=98 Identities=11% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Cc-cccCccEEEEccccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-MEASYDRIYSIEMFE 207 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~Ii~~~~~~ 207 (357)
-..|+|..+|.|+++.+|.+. . |..+..-|..-...-..+...|+ .-+..|+.+ ++ .+.+||+|.++.++.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~--~--VWVMNVVP~~~~ntL~vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD--P--VWVMNVVPVSGPNTLPVIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccC--C--ceEEEecccCCCCcchhhhhccc---chhccchhhccCCCCcchhheehhhhhh
Confidence 357999999999999999754 3 33322222110011122233343 223445554 22 238899999999887
Q ss_pred ch---hhHHHHHHHHHHhcccCceEEEEec
Q 018346 208 HM---KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 208 ~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. -+...++-++-|+|+|||.+++.+.
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 66 3467889999999999999999543
No 294
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.77 E-value=0.006 Score=54.72 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCCEEEEECCcccHHHH-HHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSL-YIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~-~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.+..|+|+-+|-|.++. .+.... ...|+++|.+|.+++..++++..+++. +...+.+|-....+....|.|....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL-- 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL-- 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc--
Confidence 46899999999999999 666553 468999999999999999999988763 6666777766544446677776532
Q ss_pred cchhhHHHHHHHHHHhcccCce
Q 018346 207 EHMKNYQNLLKKISKWMKEDTL 228 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~ 228 (357)
+|..++-...+.++|||.|-
T Consensus 271 --lPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 271 --LPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred --ccccccchHHHHHHhhhcCC
Confidence 25556666777788988665
No 295
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.73 E-value=0.037 Score=49.63 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=52.5
Q ss_pred CCEEEEECCcccHHHHHHHHHCC--------CcEEEEEcCCHHHHHHHHHHHHHcC-----C-CCeEEEEeccCCCcccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLE-----L-QNVEIIVADISTFEMEA 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p--------~~~v~~vD~s~~~l~~a~~~~~~~~-----~-~~v~~~~~d~~~~~~~~ 195 (357)
+.+|+|+|+|+|.++..++..+. ..+++.||+|+...+..++++.... . .+|.+ ..++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 47999999999999998876532 3589999999998887777765421 2 25666 33444433
Q ss_pred CccEEEEcccccchh
Q 018346 196 SYDRIYSIEMFEHMK 210 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~ 210 (357)
..-+|++|.++..++
T Consensus 95 ~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 FPGFIIANELFDALP 109 (252)
T ss_dssp CCEEEEEESSGGGS-
T ss_pred CCEEEEEeeehhcCc
Confidence 356788999887775
No 296
>PTZ00357 methyltransferase; Provisional
Probab=95.66 E-value=0.083 Score=52.84 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=65.1
Q ss_pred CEEEEECCcccHHHHHHHHHC----CCcEEEEEcCCHHHHHHHHHHHHH-cCC--------CCeEEEEeccCCCccc---
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCRV-LEL--------QNVEIIVADISTFEME--- 194 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~----p~~~v~~vD~s~~~l~~a~~~~~~-~~~--------~~v~~~~~d~~~~~~~--- 194 (357)
..|+=+|+|-|-+.....+.. -..+|++||-++.++.....+... ..- ..|+++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 368999999998766554432 135899999997755444444321 111 2599999999987422
Q ss_pred ---------cCccEEEEc--ccccchhhHHHHHHHHHHhccc----Cce
Q 018346 195 ---------ASYDRIYSI--EMFEHMKNYQNLLKKISKWMKE----DTL 228 (357)
Q Consensus 195 ---------~~fD~Ii~~--~~~~~~~~~~~~l~~~~~~Lkp----gG~ 228 (357)
+++|+|||- ++|..=+-.++.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999883 3333223356788888888887 776
No 297
>PRK13699 putative methylase; Provisional
Probab=95.63 E-value=0.053 Score=47.81 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
.+++.++.... .++..|||.-||+|..+....+. +.+++|+|++++..+.+.+++...
T Consensus 151 ~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34555554432 47889999999999999887766 789999999999999999887654
No 298
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.55 Score=41.34 Aligned_cols=146 Identities=10% Similarity=0.102 Sum_probs=89.5
Q ss_pred hhhcCC-ChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC---
Q 018346 78 EQHYEL-PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--- 153 (357)
Q Consensus 78 ~~~y~~-~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--- 153 (357)
..|||. +.+.|+....-. .||. +.+=.........++.. +..+...+|+|+|+..-+..|...+..
T Consensus 36 ~~FYD~~GS~LFe~I~~LP-----EYYp--TRtEaaIl~~~a~Eia~---~~g~~~lveLGsGns~Ktr~Llda~~~~~~ 105 (321)
T COG4301 36 KYFYDDRGSELFEQITRLP-----EYYP--TRTEAAILQARAAEIAS---ITGACTLVELGSGNSTKTRILLDALAHRGS 105 (321)
T ss_pred ceeecccHHHHHHHHhccc-----cccC--chhHHHHHHHHHHHHHH---hhCcceEEEecCCccHHHHHHHHHhhhcCC
Confidence 466754 566777776543 2232 11111111112222332 335789999999999888887766522
Q ss_pred -cEEEEEcCCHHHHHHHHHHHHHc--CCCCeEEEEeccCCCc--cc--cCccEEEEcccccch--hhHHHHHHHHHHhcc
Q 018346 154 -CKITGICNSKTQKEFIEEQCRVL--ELQNVEIIVADISTFE--ME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMK 224 (357)
Q Consensus 154 -~~v~~vD~s~~~l~~a~~~~~~~--~~~~v~~~~~d~~~~~--~~--~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~Lk 224 (357)
.+++.+|+|...+....+.+... ++ .|.-+++|..... ++ +.==.++....+.++ .+...++..+...|+
T Consensus 106 ~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~ 184 (321)
T COG4301 106 LLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALR 184 (321)
T ss_pred cceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCC
Confidence 68999999999887665544333 23 5667777765421 11 222233444456666 446678999999999
Q ss_pred cCceEEEEec
Q 018346 225 EDTLLFVHHF 234 (357)
Q Consensus 225 pgG~l~~~~~ 234 (357)
||-.+++-.-
T Consensus 185 pGd~~LlGvD 194 (321)
T COG4301 185 PGDYFLLGVD 194 (321)
T ss_pred CcceEEEecc
Confidence 9999988544
No 299
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.57 E-value=0.057 Score=53.10 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=64.6
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-----------------
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----------------- 190 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----------------- 190 (357)
++.+|+=+|||. |..+..+++.. ++.|+++|.++..++.++. .|. +++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~----lGa---~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS----MGA---EFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEeccccccccccccceeecCHHHH
Confidence 578999999985 56666667666 7889999999997665554 332 232222211
Q ss_pred ------Cccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 191 ------FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 191 ------~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+... ..+|+|+....+..-+.+.-+.+++.+.+|||++++=
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 0101 4699998877666655555577888999999998653
No 300
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.53 E-value=0.028 Score=48.60 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=70.8
Q ss_pred CCEEEEECCcccHHHHHHHHHC----C-C----cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY----S-N----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 192 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~----p-~----~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 192 (357)
-.+++|++...|..+..|.+++ | . ..+++||+.+- ..++.|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 4689999999999999998774 2 1 13999998654 23446778899998743
Q ss_pred cc-cCccEEEEccc-----ccchhh------HHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 193 ME-ASYDRIYSIEM-----FEHMKN------YQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 193 ~~-~~fD~Ii~~~~-----~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+. ++.|+|+|.+. +|.++. ....+.-...+|||||.++.-++-.+.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD 168 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence 12 47999999873 454433 344566667889999999887775544
No 301
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.012 Score=56.33 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=83.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc-----ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~-----~~~fD~I 200 (357)
.++.+|||.=|++|.-++..++..|+. +|++-|.++.+++..++|++.++.. .++....|+..+-. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 367899999999999999999998875 7999999999999999999988764 56777777665311 1679987
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
=..+ + .....+++.+.+.++.||.|.+.....
T Consensus 188 DLDP-y---Gs~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 188 DLDP-Y---GSPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred ecCC-C---CCccHHHHHHHHHhhcCCEEEEEecch
Confidence 6653 2 234668888889999999999976543
No 302
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.26 E-value=0.13 Score=43.33 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=78.1
Q ss_pred CCCEEEEECCcccHHHHHHHHH---C-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------c-cC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------E-AS 196 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~---~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-------~-~~ 196 (357)
.+..|+|+|.-.|+.+++.|.. . ...+|+++|++-..++-+... .++|.|+.++-.+... . +.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 5679999999999988888754 2 237999999987765433322 3589999999887431 1 22
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 240 (357)
--+.++-.+-|+.+..-+-++.+.++|..|-++++++......+
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 24445556667777777788888999999999999887766554
No 303
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.22 E-value=0.3 Score=46.06 Aligned_cols=101 Identities=18% Similarity=0.127 Sum_probs=67.6
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCC-C-ccc--cCccEEE
Q 018346 128 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DIST-F-EME--ASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~-~-~~~--~~fD~Ii 201 (357)
.++.+|+=+|||. |.++..+++.....+|+++|.++.-++.|++..... .+..... +... . ... ..+|+++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 3445999999995 777788888876679999999999998887743211 1111111 1110 0 111 3599998
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
-... ....+..+.+.++|||.+.+.-....
T Consensus 244 e~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 244 EAVG------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred ECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 5544 24578889999999999988655443
No 304
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.17 E-value=0.32 Score=45.11 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-------CccccC
Q 018346 125 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-------FEMEAS 196 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-------~~~~~~ 196 (357)
..+.++.+||..|+| .|..+..+++.. +.+|++++.+++..+.+++ .|.+. +..+-.. ......
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADE---VLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCE---EEcCCCcCHHHHHHHhcCCC
Confidence 346678899998876 477888888876 7889999999987766643 34321 1111111 111256
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|+|+..... ...++.+.+.|+++|.++....
T Consensus 233 ~D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 233 FDVIFDFVGT------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ceEEEECCCC------HHHHHHHHHHhhcCCEEEEECC
Confidence 8988864321 3467788899999999887543
No 305
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.10 E-value=0.14 Score=48.10 Aligned_cols=100 Identities=11% Similarity=0.167 Sum_probs=62.2
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCcc-ccCcc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM-EASYD 198 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~-~~~fD 198 (357)
......++.+||=.||| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+.+ .....|+.+... .+.+|
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCC
Confidence 33444568899999886 466677777776 65 79999999988776654 343211 111111111111 13489
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+-...- ...+..+.+.|++||.+++.-
T Consensus 238 ~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 238 VSFEVSGH------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 88764321 245677888999999988754
No 306
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.06 E-value=0.11 Score=48.57 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH-------HHcCC--
Q 018346 108 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL-- 178 (357)
Q Consensus 108 ~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~-------~~~~~-- 178 (357)
+...+.+.+.+..+++.+.++++....|+|+|.|.....++.......-+|+++....-+.|..+. +..|-
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 456666777788888899999999999999999999988886643345667776655444443332 22333
Q ss_pred CCeEEEEeccCCCcc----ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 179 QNVEIIVADISTFEM----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 179 ~~v~~~~~d~~~~~~----~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+..+++++.+... ....++|++|.+.-.- +...=++++..-+++|-+++-..+
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp-~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDP-ELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccCCH-HHHHhhHHHHhhCCCcceEecccc
Confidence 257888888776322 1467899988765332 333334577788889988765433
No 307
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.04 E-value=0.15 Score=45.08 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=63.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 204 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~ 204 (357)
.+.++...+|+|.-.|+.+-.|.++ +..|++||.-+- .++.-..| .|+....|-..+.+. .+.|-.+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m-----a~sL~dtg--~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM-----AQSLMDTG--QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc--ceEEEEeccchh-----hhhhhccc--ceeeeeccCcccccCCCCCceEEeeh
Confidence 3568999999999999999999988 789999998664 23333333 788899998887653 7799999875
Q ss_pred cccchhhHHHHHHHHHHhc
Q 018346 205 MFEHMKNYQNLLKKISKWM 223 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~L 223 (357)
+ +.+.++-..+...|
T Consensus 279 V----EkP~rv~~li~~Wl 293 (358)
T COG2933 279 V----EKPARVAALIAKWL 293 (358)
T ss_pred h----cCcHHHHHHHHHHH
Confidence 4 34555555555554
No 308
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.15 Score=47.41 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=42.5
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHH----CC----CcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YS----NCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~----~p----~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
+.+..+.+.+..++|+|.|.|.++..+++. .| ..++..|++|++..+.-+++.+..
T Consensus 69 ~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 69 LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 344455556678999999999988887654 24 479999999999877777766554
No 309
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.74 E-value=0.54 Score=42.38 Aligned_cols=105 Identities=10% Similarity=0.064 Sum_probs=72.9
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCeEEEEeccCCC-c--c-c-----cCc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTF-E--M-E-----ASY 197 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~-~--~-~-----~~f 197 (357)
...|+.+|||-=.-...+... ++..++=+|. |+.++.-++.+...+. .+.+++..|+.+. . . . ...
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 457999999986666655321 2467777777 6666666666665432 3788999998621 0 0 0 223
Q ss_pred cEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
-++++-.++.++ +....+++.+.+...||+.+++.....
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 478888888888 457789999988888999999876654
No 310
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.66 E-value=0.078 Score=48.13 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCCCCCE--EEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCC---
Q 018346 117 MLELYCERSRLEDGHT--VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADIST--- 190 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~--vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~--- 190 (357)
.++.++..-...++.. -+|||+|.-++--.+-...-+....++|++...+..|+.++.++++. .+..++....+
T Consensus 88 wI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll 167 (419)
T KOG2912|consen 88 WIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLL 167 (419)
T ss_pred HHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcc
Confidence 4444544333333332 48998887766544433323678999999999999999999998874 66666553221
Q ss_pred -----CccccCccEEEEcccc
Q 018346 191 -----FEMEASYDRIYSIEMF 206 (357)
Q Consensus 191 -----~~~~~~fD~Ii~~~~~ 206 (357)
...+..||.+.||+++
T Consensus 168 ~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 168 MDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred hhhhccCccceeeEEecCCch
Confidence 1112459999999987
No 311
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.49 E-value=0.039 Score=45.12 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=61.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC-C-ccccCccEEEEcccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-F-EMEASYDRIYSIEMF 206 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~-~-~~~~~fD~Ii~~~~~ 206 (357)
+++++-+|+..-..-.....+. .++|+.+|.++--+. +..+ +++ .+...|+.. + ...++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~---~~~~----dr~ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQ---EEFR----DRLSSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccC---cccc----cccccccHHHHHHHHHHhhccchhhheechh
Confidence 5678888888665544444442 457888887652111 0000 111 122222221 1 112789999999998
Q ss_pred cchh-----------hHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 207 EHMK-----------NYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|+. .-.+.+.++..+|||||.+++..|-..
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 8761 124678889999999999999988664
No 312
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.43 E-value=0.64 Score=43.34 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEE
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 201 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii 201 (357)
....+.++.+||=.|+| .|..+..+++.. +++|++++.+++.++.+++ .|.+.+ + |..+.. .+.+|+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~----~Ga~~v--i--~~~~~~-~~~~d~~i 228 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA----LGAASA--G--GAYDTP-PEPLDAAI 228 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----hCCcee--c--cccccC-cccceEEE
Confidence 34567788999999975 455666777776 7889999999887655544 454321 1 111111 24578765
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..... ...+....+.|++||++++.-
T Consensus 229 ~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 43221 246778889999999987754
No 313
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.42 E-value=0.56 Score=46.57 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=72.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC----CcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCC-Ccc--ccCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADIST-FEM--EASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p----~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~-~~~--~~~fD~ 199 (357)
++..|.|..||+|.+.....+... ...++|.+..+.+...++.++.-.+.. ......+|-.. ... ..+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 567999999999998876544321 246999999999999999987655542 22333344332 111 156999
Q ss_pred EEEcccccch-------------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|++++++... +.-..++..+..+|++||...+..+..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 9999976321 012346777888999999877665543
No 314
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.38 E-value=0.021 Score=53.74 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=54.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCC
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTF 191 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~ 191 (357)
.++|..|.|+.||.|-+++.++.+ ++.|++-|+++++++..+.+++.+.++ +|..+..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 357899999999999999999988 799999999999999999999887764 488888776553
No 315
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.37 E-value=0.41 Score=45.05 Aligned_cols=96 Identities=11% Similarity=0.149 Sum_probs=58.8
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcC---CHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE
Q 018346 127 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICN---SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 127 ~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~---s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
..++.+||=+|+| .|.++..+++.. +++|++++. ++..++.++ ..|.+.+.....|..+......+|+|+-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~----~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE----ELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH----HcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 4578899999987 366777788776 679999986 566555443 3443211111111111001146898886
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...- ...+....+.|++||.+++.-
T Consensus 245 ~~g~------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 245 ATGV------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CcCC------HHHHHHHHHHccCCcEEEEEe
Confidence 5321 236777889999999987653
No 316
>PRK11524 putative methyltransferase; Provisional
Probab=94.16 E-value=0.05 Score=49.74 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=40.8
Q ss_pred CeEEEEeccCCCc--c-ccCccEEEEcccccc----------------hhhHHHHHHHHHHhcccCceEEEEec
Q 018346 180 NVEIIVADISTFE--M-EASYDRIYSIEMFEH----------------MKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 180 ~v~~~~~d~~~~~--~-~~~fD~Ii~~~~~~~----------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+.+++++|..+.. . .++||+|++++++.- .......+..+.++|||||.+++...
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4577888887631 2 278999999998742 11235688999999999999998643
No 317
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.05 E-value=0.14 Score=47.56 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=51.6
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--c-CccEEEEcccccc
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A-SYDRIYSIEMFEH 208 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~-~fD~Ii~~~~~~~ 208 (357)
+++|+.||.|+++..+.... -..+.++|+++.+.+.-+.|.. ....+|+.++... . .+|+++..++-+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCce
Confidence 79999999999999998873 2357799999998888887763 6788899887532 3 5999999887644
Q ss_pred h
Q 018346 209 M 209 (357)
Q Consensus 209 ~ 209 (357)
+
T Consensus 74 f 74 (335)
T PF00145_consen 74 F 74 (335)
T ss_dssp T
T ss_pred E
Confidence 3
No 318
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.96 E-value=0.26 Score=45.93 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Q 018346 115 KAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171 (357)
Q Consensus 115 ~~~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~ 171 (357)
.+.+..++..+.. .+-..|+|+|.|.|.++..++-.+ +..|++||.|....+.|++
T Consensus 138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 3444445544433 345689999999999999999887 8899999999877766655
No 319
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.92 E-value=0.07 Score=40.59 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~ 161 (357)
+....+|||||+|-+..-|... |..-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 5568999999999999988887 667789986
No 320
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.66 E-value=1.8 Score=35.96 Aligned_cols=95 Identities=8% Similarity=-0.006 Sum_probs=63.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC---c--cccCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---E--MEASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~---~--~~~~fD~Ii~~ 203 (357)
++.+|+-|||=+-...+.- ...++.+++..|++.. ....+- + .|+.-|.... + ..++||+|++.
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~R--------F~~~~~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRR--------FEQFGG-D-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecch--------HHhcCC-c-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 5689999998775444332 1335778999999764 333332 3 5677776652 1 12789999999
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++-.-+-..+....+.-++|+++.+++.+.
T Consensus 94 PPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 94 PPFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 9994334445566667777789898888655
No 321
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.54 E-value=0.22 Score=45.35 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=70.6
Q ss_pred CCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 130 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 130 ~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
+.+|.-||.| .|..+..+|--. ++.|+-+|+|.+-+.+....+ +. ++.....+...+... .+.|+||..-.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f---~~-rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF---GG-RVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh---Cc-eeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4578888888 466777777555 889999999998765554433 22 666666665544322 6789999877666
Q ss_pred chhhHHHHHHHHHHhcccCceEEE
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.-..+.-..+++.+.+|||++++=
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEE
Confidence 667788889999999999998754
No 322
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.53 E-value=0.74 Score=38.45 Aligned_cols=101 Identities=20% Similarity=0.155 Sum_probs=61.1
Q ss_pred ECCcccHHHHHHHHHCC-CcEEEEEcCCHH--HHHHH---HHHHHHcCCCCeE-EEEeccCCCc--c---ccCccEEEEc
Q 018346 136 VGCGWGSLSLYIAQKYS-NCKITGICNSKT--QKEFI---EEQCRVLELQNVE-IIVADISTFE--M---EASYDRIYSI 203 (357)
Q Consensus 136 iGcG~G~~~~~la~~~p-~~~v~~vD~s~~--~l~~a---~~~~~~~~~~~v~-~~~~d~~~~~--~---~~~fD~Ii~~ 203 (357)
+|=|.=+++..|++.++ +..++++..... ..+.. ..++....-.++. ....|+..+. + ...||.|+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 45566667778888875 556666654333 22221 2333322111222 2334555542 1 2679999999
Q ss_pred ccccc-----h--------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 204 EMFEH-----M--------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 204 ~~~~~-----~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.|-.. - .-...+++.+.++|+++|.+.+.....
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 88655 1 125678899999999999999976654
No 323
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.50 E-value=0.078 Score=51.06 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=77.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------cccCccEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------MEASYDRI 200 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~fD~I 200 (357)
.+.++|-+|-|+|.+...+...+|..++++++++|.+++.|..++....-++..++-.|..+.. -...||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 4568999999999999999999999999999999999999998764332222333333333211 11468988
Q ss_pred EEcc---cccch--hh----HHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 201 YSIE---MFEHM--KN----YQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 201 i~~~---~~~~~--~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
...- ..+.+ +. ...++..+...|.|-|.+++...++..
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 7532 12333 11 255788889999999999998777654
No 324
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.45 E-value=0.19 Score=45.87 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=68.3
Q ss_pred CCEEEEECCcccHHHHHHHHHC--------------------CCcEEEEEcCCHHH--HHHHHHHHHHc-----------
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--------------------SNCKITGICNSKTQ--KEFIEEQCRVL----------- 176 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--------------------p~~~v~~vD~s~~~--l~~a~~~~~~~----------- 176 (357)
..+||.||.|.|.-...++..+ +...++.||+.+-. +......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999998766666544 11489999987643 22222222111
Q ss_pred --CC--C--CeEEEEeccCCCccc--------cCccEEEEcccccc-----hhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 177 --EL--Q--NVEIIVADISTFEME--------ASYDRIYSIEMFEH-----MKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 177 --~~--~--~v~~~~~d~~~~~~~--------~~fD~Ii~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.. + ++.|.+.|+.....+ .+.|+|.....++. +..-.+++.++...++||..|+|.+..
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 00 1 689999999876432 12455554444432 345678999999999999999886553
No 325
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.26 E-value=0.81 Score=42.86 Aligned_cols=95 Identities=11% Similarity=0.183 Sum_probs=59.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEc
Q 018346 126 RLEDGHTVLDVGCGW-GSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 203 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~-G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~ 203 (357)
...++.+||=+|||. |..+..++++ ..+.+|+++|.+++.++.+++ .+. . ....+ ......+|+|+-.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~~---~~~~~g~d~viD~ 229 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLIDD---IPEDLAVDHAFEC 229 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehhh---hhhccCCcEEEEC
Confidence 346789999999863 4455566664 445689999999987777654 221 1 11111 1111248988853
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..- ......+....++|++||++++.-
T Consensus 230 ~G~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 230 VGG---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCC---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 321 012456788889999999988754
No 326
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.16 E-value=0.81 Score=36.03 Aligned_cols=92 Identities=17% Similarity=0.258 Sum_probs=48.4
Q ss_pred CCCEEEEECCccc-HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEccc
Q 018346 129 DGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G-~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~ 205 (357)
+..+|+|+|-|.= ..+..|++. +..|+++|+.+. ++. . .+.++..|+.+.... ...|+|.|.-+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIYEGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-c---CcceeeecccCCCHHHhcCCcEEEEeCC
Confidence 3459999999864 456666766 799999999987 222 2 567899999985544 67899998655
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
-..+ ...+-++.+. -|.-+++...+...
T Consensus 80 P~El---~~~il~lA~~--v~adlii~pL~~e~ 107 (127)
T PF03686_consen 80 PPEL---QPPILELAKK--VGADLIIRPLGGES 107 (127)
T ss_dssp -TTS---HHHHHHHHHH--HT-EEEEE-BTTB-
T ss_pred ChHH---hHHHHHHHHH--hCCCEEEECCCCCC
Confidence 4322 2333333332 25667776554433
No 327
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.13 E-value=0.45 Score=42.36 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHH---C--CCcEEEEEcCCH------------------------
Q 018346 114 EKAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQK---Y--SNCKITGICNSK------------------------ 163 (357)
Q Consensus 114 ~~~~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~---~--p~~~v~~vD~s~------------------------ 163 (357)
....+..+++..-. .-+..|+|.||-.|..++.++.. + ++.++++.|.=.
T Consensus 58 Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~ 137 (248)
T PF05711_consen 58 RLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGY 137 (248)
T ss_dssp HHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccc
Confidence 34445555554421 22358999999999877665432 2 345788887211
Q ss_pred --HHHHHHHHHHHHcCC--CCeEEEEeccCCCccc---cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 164 --TQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 164 --~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~~~---~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..++..++++...|+ +++.++.+.+.+..+. .++-++... ..........|+.+...|.|||++++.+.+.
T Consensus 138 ~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 138 LAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp CTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEe--ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 134445555555554 4899999998763222 222222222 2222456778999999999999999977654
No 328
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.12 E-value=1.8 Score=37.76 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=63.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--------c---c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------E---A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~---~ 195 (357)
.+++||-.|++ |.++..+++.+ .+.+|++++-+++....+.+.....+ ++.++.+|+.+... . +
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35789999875 55555555443 37899999998876665544443322 68888999886320 0 3
Q ss_pred CccEEEEcccccch-----------------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHM-----------------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..|.++.+...... .....+++.+.+.++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46888876642110 1122345566667778887776544
No 329
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.02 E-value=1.8 Score=37.49 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=65.2
Q ss_pred CCCEEEEECCccc----HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCC-Cccc-cCccEEE
Q 018346 129 DGHTVLDVGCGWG----SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADIST-FEME-ASYDRIY 201 (357)
Q Consensus 129 ~~~~vLDiGcG~G----~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~-~~~~-~~fD~Ii 201 (357)
+...|+++.|+.| .+++..|.+.-+.++++|-.++..+...++.+...+.. .++|+.++..+ .... ...|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4578999976644 23444444445789999999988888888888877764 57999888533 2222 6789888
Q ss_pred EcccccchhhHH-HHHHHHHHhcccCceEEEEec
Q 018346 202 SIEMFEHMKNYQ-NLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 202 ~~~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~~~ 234 (357)
...-. .+.. ++++.+. +.|.|.+++...
T Consensus 121 VDc~~---~d~~~~vl~~~~--~~~~GaVVV~~N 149 (218)
T PF07279_consen 121 VDCKR---EDFAARVLRAAK--LSPRGAVVVCYN 149 (218)
T ss_pred EeCCc---hhHHHHHHHHhc--cCCCceEEEEec
Confidence 76433 2334 4554432 556677666433
No 330
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.02 E-value=0.48 Score=42.07 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=60.2
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC------ccccCccEE
Q 018346 128 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF------EMEASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD~I 200 (357)
.++.+||..|+|+ |..+..+++.. +.+|++++.++...+.+++ .+.+. ++...-... .....+|+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADH--VIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCce--eccCCcCCHHHHHHHhcCCCCCEE
Confidence 6788999999985 66777777765 6899999999877665543 22211 111110010 012569999
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+....- ...+..+.+.|+++|.++....
T Consensus 206 i~~~~~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 206 IDAVGG------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence 865331 1456777889999999887543
No 331
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.99 E-value=0.44 Score=43.25 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=60.2
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC----CCccccC
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS----TFEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~----~~~~~~~ 196 (357)
......++.+||=+|+| .|..+..+++.. +++ |+++|.++..++.+++ .|.+.+ +...+.. +......
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~-i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATAL-AEPEVLAERQGGLQNGRG 187 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEe-cCchhhHHHHHHHhCCCC
Confidence 34445578899999886 355666677766 665 9999999887666554 343211 1001110 0111135
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+-... ....++.+.+.|+|+|++++.-
T Consensus 188 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSG------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCC------ChHHHHHHHHHhcCCCEEEEec
Confidence 898876422 1345777888999999988754
No 332
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.80 E-value=0.6 Score=36.72 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=57.6
Q ss_pred cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cc-cCccEEEEcccccchhh
Q 018346 139 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-ASYDRIYSIEMFEHMKN 211 (357)
Q Consensus 139 G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~-~~fD~Ii~~~~~~~~~~ 211 (357)
|.|..+..+++.. +++|+++|.++..++.+++ .|.+ .++..+-.++. .. ..+|+|+-...-
T Consensus 1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~----~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~----- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKE----LGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS----- 68 (130)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHH----TTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHh----hccc--ccccccccccccccccccccccceEEEEecCc-----
Confidence 4688899999887 5999999999997766654 3432 12222211110 11 369998865431
Q ss_pred HHHHHHHHHHhcccCceEEEEeccC
Q 018346 212 YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 212 ~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...++...++|+|+|.+++.-...
T Consensus 69 -~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 -GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -HHHHHHHHHHhccCCEEEEEEccC
Confidence 467888999999999998865544
No 333
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.70 E-value=0.17 Score=46.99 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=50.7
Q ss_pred EEEECCcccHHHHHHHHHCCCcEE-EEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEcccccch
Q 018346 133 VLDVGCGWGSLSLYIAQKYSNCKI-TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFEHM 209 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~p~~~v-~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~~~ 209 (357)
|+|+.||.|.++.-+... +.++ .++|+++.+.+..+.|... .+..+|+.++... ..+|+++..++-..+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 689999999999988866 5664 5799999988877776532 3355777765432 458999988765443
No 334
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.33 E-value=1.7 Score=41.93 Aligned_cols=98 Identities=8% Similarity=0.004 Sum_probs=61.6
Q ss_pred HHHHHHHcCC-CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 118 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 118 l~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
++.+++..++ .++.+|+=+|||. |......++.. +++|+++|.++...+.|+. .|. +.. +..+. -.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e~--v~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGY---EVM--TMEEA--VK 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCC---EEc--cHHHH--Hc
Confidence 3445554443 4789999999996 55555555555 7899999999986655543 343 211 11111 14
Q ss_pred CccEEEEcccccchhhHHHHHHH-HHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKK-ISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~ 233 (357)
.+|+|+.... ....+.. ..+.+|+||+++..-
T Consensus 257 ~aDVVI~atG------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 EGDIFVTTTG------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCEEEECCC------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 5799987532 1334544 478999999987654
No 335
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.31 E-value=1.1 Score=34.41 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=56.3
Q ss_pred CcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEEcccccchh
Q 018346 138 CGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIEMFEHMK 210 (357)
Q Consensus 138 cG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~~~~~~~~~ 210 (357)
||.|.++..+++.+ .+..|+.+|.+++.++.+++ . .+.++.+|..+... . .+.|.|++...-.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d--- 73 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDDD--- 73 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSSH---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCCH---
Confidence 67777888777654 24589999999997666554 2 46789999987421 1 5788888754421
Q ss_pred hHHHHHHHHHHhcccCceEEEEecc
Q 018346 211 NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 211 ~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.....+....+.+.|...++.....
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 2233344455667788887776543
No 336
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.18 E-value=0.34 Score=45.24 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=55.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc---c-CccEEEEcc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---A-SYDRIYSIE 204 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~-~fD~Ii~~~ 204 (357)
..+++|+.||.|.+..-+... +. -+.++|+++.+++.-+.|... ..++..|+.+.... . .+|+++..+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCC
Confidence 468999999999999888876 44 467999999988777776542 45567777765432 2 789999998
Q ss_pred cccch
Q 018346 205 MFEHM 209 (357)
Q Consensus 205 ~~~~~ 209 (357)
+-+.+
T Consensus 76 PCQ~F 80 (328)
T COG0270 76 PCQDF 80 (328)
T ss_pred CCcch
Confidence 77655
No 337
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.16 E-value=0.55 Score=43.75 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=60.4
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccC---CCccccC
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS---TFEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~---~~~~~~~ 196 (357)
....+.++.+||=+|+| .|..+..+++.. +++ |+++|.+++..+.+++ .|.+.+ .....+.. +......
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCC
Confidence 44566778999999875 355566677765 666 9999999887666543 343211 11111100 1111136
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+-...- ...+....+.|+++|.+++.-
T Consensus 232 ~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSGN------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 8988854321 234566778899999987643
No 338
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.01 E-value=0.59 Score=44.30 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=62.0
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC-Cc--ccc
Q 018346 122 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-FE--MEA 195 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~-~~--~~~ 195 (357)
.+...+.++.+||=.|+| .|..+..+++.. ++ +|+++|.++..++.+++ .|.+.+ .....|..+ +. ..+
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGG 258 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCC
Confidence 344566788899999876 356667777766 66 69999999987776644 343211 111111111 00 013
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+-...- ...+....+.|+++|.+++.-
T Consensus 259 g~d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 259 GVDYAFEMAGS------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEc
Confidence 58988854221 245677788999999987643
No 339
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.95 E-value=0.69 Score=41.57 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-----CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 190 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-----p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~ 190 (357)
++..+.+.--+.+...++|+|||.|.++.+++... +...++.||-...-. .+......... ..+.=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 44444444444677899999999999999999887 456899999755322 22222332221 145666677776
Q ss_pred Cc
Q 018346 191 FE 192 (357)
Q Consensus 191 ~~ 192 (357)
+.
T Consensus 85 l~ 86 (259)
T PF05206_consen 85 LD 86 (259)
T ss_pred cc
Confidence 54
No 340
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.92 E-value=2.5 Score=39.81 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----Ccccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~ 195 (357)
....+.++.+||=.||| .|..+..+++.. ++ +|+++|.++...+.+++ .|.+.+ .....|..+ .....
T Consensus 170 ~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCC
Confidence 34456788999999885 356667777776 66 59999999987766643 343211 111111111 01113
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+-...- ...+....+.+++||++++.-
T Consensus 245 g~d~vid~~g~------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 245 GADVVIDAVGR------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCEEEECCCC------HHHHHHHHHHhccCCEEEEEC
Confidence 58988753221 235667778999999988753
No 341
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.74 E-value=2.8 Score=37.50 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=49.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++.+||-.| |+|.++..+++.+ .+++|++++.+++.+....+.....+. ++.++..|+.+... . +
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888887 4566666555443 378999999988876655544444333 67788889876320 0 3
Q ss_pred CccEEEEcc
Q 018346 196 SYDRIYSIE 204 (357)
Q Consensus 196 ~fD~Ii~~~ 204 (357)
..|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579998765
No 342
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.68 E-value=2.9 Score=37.11 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=53.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
.++++|=.| |+|.++..+++.+ .+.+|+.++-++..++...+.....+. ++.++.+|+.+... . +
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 467888888 5667777766554 367999999988877666655554443 68889999987321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|.|+.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 58999987653
No 343
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.64 E-value=0.79 Score=42.80 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=66.0
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc--cc-
Q 018346 121 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE--ME- 194 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~- 194 (357)
+.....++++.+||=.|+ |.|.+++.|++.. ++.++++-.|++-.+ .+++.|.+ -+.+...|+.+-. ..
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcC
Confidence 344566778999999984 5678999999987 557777777776443 33445543 2333344433311 11
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+|+|+..-- ...+....+.|+++|.++..-.
T Consensus 209 g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 209 GKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence 35999987533 3456668889999999887544
No 344
>PRK13699 putative methylase; Provisional
Probab=91.43 E-value=0.22 Score=43.93 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=37.5
Q ss_pred EEEEeccCCC--cc-ccCccEEEEcccccc---------h------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 182 EIIVADISTF--EM-EASYDRIYSIEMFEH---------M------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 182 ~~~~~d~~~~--~~-~~~fD~Ii~~~~~~~---------~------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++++|..+. .. .+++|+|+..+++.- + .-....+.++.++|||||.+++..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5667777653 22 378999999998841 0 124578899999999999987643
No 345
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.35 E-value=2.6 Score=37.85 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=60.7
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEeccCCCccccCccEE
Q 018346 124 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
...+.++.+||-.|||. |..+..+++.. +.+ |++++.+++..+.+++ .| .+.+..... .......+|+|
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~~~~d~v 163 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEA----LGPADPVAADTA---DEIGGRGADVV 163 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHH----cCCCccccccch---hhhcCCCCCEE
Confidence 45567888999998875 66777777776 566 9999999887665554 23 111111110 11112468988
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..... ...+....+.|+++|.++...
T Consensus 164 l~~~~~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 164 IEASGS------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEccCC------hHHHHHHHHHhcCCcEEEEEe
Confidence 864221 235677788999999987643
No 346
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.33 E-value=0.64 Score=47.88 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=64.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC-------C-----CcEEEEEcCCH---HHHHHHHH-----------HHHH-----cC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY-------S-----NCKITGICNSK---TQKEFIEE-----------QCRV-----LE 177 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~-------p-----~~~v~~vD~s~---~~l~~a~~-----------~~~~-----~~ 177 (357)
+.-+|+|+|-|+|.......+.+ | ..+++++|..| +.+..+.+ .... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999999777665433 3 24889999644 33333221 1111 12
Q ss_pred C-------C--CeEEEEeccCCCcc--ccCccEEEEcccccch-h--hHHHHHHHHHHhcccCceEEEEe
Q 018346 178 L-------Q--NVEIIVADISTFEM--EASYDRIYSIEMFEHM-K--NYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 178 ~-------~--~v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~-~--~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. . ++++..+|+.+... ...+|+|+..+---.- + --..+++.+.++++|||++.-.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1 1 34566778765322 1469999986421111 1 13679999999999999987543
No 347
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.31 E-value=3.1 Score=39.09 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=62.8
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEe-ccCC-Cc--ccc
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DIST-FE--MEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~-d~~~-~~--~~~ 195 (357)
+...+.++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++ ..|.+.+ ..... ++.+ .. ..+
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCC
Confidence 3455678899999997 3778888888886 7899999998886555542 2344211 11101 1111 00 013
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+|+|+-... ...+..+.++|++||.+++.
T Consensus 228 gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYFDNVG-------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEEECCC-------HHHHHHHHHHhccCCEEEEE
Confidence 5888875322 23567788999999998864
No 348
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.24 E-value=0.92 Score=41.29 Aligned_cols=89 Identities=21% Similarity=0.151 Sum_probs=54.6
Q ss_pred CEEEEECCc--ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 131 HTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 131 ~~vLDiGcG--~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
.+|+=+|.| .|.++..+.+..+...+++.|.+...++.+.+ .|+ .....+..........|+|+..-|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv---~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGV---IDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCc---ccccccchhhhhcccCCEEEEeccHHH
Confidence 577888877 45677777776556678999999886555443 222 222111110111145799998777653
Q ss_pred hhhHHHHHHHHHHhcccCceE
Q 018346 209 MKNYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l 229 (357)
...+++++...|+||..+
T Consensus 77 ---~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 77 ---TEEVLKELAPHLKKGAIV 94 (279)
T ss_pred ---HHHHHHHhcccCCCCCEE
Confidence 456777777777777654
No 349
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.24 E-value=0.43 Score=45.35 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=55.5
Q ss_pred CCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 129 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
++.+|+=+|+| .|..+...+... +++|+++|.+++.++.+.... +. .+.....+...+... ..+|+|+.....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~---g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEF---GG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhc---Cc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 45679999998 455666666665 679999999987655443321 21 122111111111101 568999976433
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...+.+.-+-++..+.++||++++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 222112212355667789998765433
No 350
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.86 E-value=1.6 Score=40.63 Aligned_cols=92 Identities=12% Similarity=0.195 Sum_probs=58.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec---cCCCccc-cCccEEE
Q 018346 128 EDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---ISTFEME-ASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d---~~~~~~~-~~fD~Ii 201 (357)
.++.+||-.|||. |..+..+++.. +. ++++++.++...+.+++ .+.+. ++..+ +...... ..+|+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARA----MGADE--TVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCCE--EEcCCchhhhhhhccCCCccEEE
Confidence 3788999998875 66777788776 66 79999998887664433 23321 11111 1111111 3589998
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..... ...++.+.+.|+++|.++..
T Consensus 237 d~~g~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASGA------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 75331 23567788999999998764
No 351
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.75 E-value=4 Score=37.70 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=62.5
Q ss_pred HHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe---ccCCC---cc
Q 018346 122 CERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DISTF---EM 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~---d~~~~---~~ 193 (357)
.+...+.++.+||=.|. |.|..+..+++.. +++|++++.+++..+.+++ .|.+.+ +-.. +..+. ..
T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~----lGa~~v-i~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKK----LGFDVA-FNYKTVKSLEETLKKAS 204 (325)
T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEE-EeccccccHHHHHHHhC
Confidence 34556778899998884 5778888888876 7899999998886655533 444221 1111 11110 01
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+.+|+|+-... ...+....++|+++|+++..
T Consensus 205 ~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 205 PDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEe
Confidence 135888875321 12457788999999999864
No 352
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=90.73 E-value=0.98 Score=36.53 Aligned_cols=115 Identities=12% Similarity=0.016 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC
Q 018346 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191 (357)
Q Consensus 112 ~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~ 191 (357)
.+|+..+++.......-+ .-|||+|-|.|..=-.|.+.+|+.+|+++|-.-..- ...--+.-.++.+|+.+.
T Consensus 12 taQR~~L~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h-------p~~~P~~~~~ilGdi~~t 83 (160)
T PF12692_consen 12 TAQRDCLNWAAAQVAGLP-GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH-------PSSTPPEEDLILGDIRET 83 (160)
T ss_dssp HHHHHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG---GGGEEES-HHHH
T ss_pred HHHHHHHHHHHHHhcCCC-CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC-------CCCCCchHheeeccHHHH
Confidence 357778888887776544 479999999999999999999999999999432110 000001234566666552
Q ss_pred ccc-----cCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEec
Q 018346 192 EME-----ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 192 ~~~-----~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
... .+.-++-...-.++- .....+-..+..+|.|||.++-..+
T Consensus 84 l~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 84 LPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp HHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred hHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 111 122222222222211 1122233446788999999876544
No 353
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.63 E-value=4.8 Score=37.16 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-----cccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----EMEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~ 195 (357)
....+.++.+||-+|+| .|..+..+++.. +.+ +++++.+++..+.+++ .+.+ .++..+-... ....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHHhcCC
Confidence 44566788899999876 366777777776 666 8899999887665533 3332 2222111110 0124
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+|+|+.... ....+..+.++|+++|.++....
T Consensus 226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 6899986422 13467777889999999876443
No 354
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=90.57 E-value=0.42 Score=47.35 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC----cc-----ccC
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EM-----EAS 196 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~----~~-----~~~ 196 (357)
+.++..|||+||..|+.....++..| +.-|+|+|+-|- ..++++.-.+.|+... +. ..+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 35788999999999999998888876 567999998764 1223555555665532 11 135
Q ss_pred ccEEEEccccc----chhh-------HHHHHHHHHHhcccCceEEEEecc
Q 018346 197 YDRIYSIEMFE----HMKN-------YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 197 fD~Ii~~~~~~----~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.|+|+..++-. +..+ .-..++-+...|..||.++--.+.
T Consensus 111 advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr 160 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR 160 (780)
T ss_pred CcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence 68888765321 1111 234566677888999995554443
No 355
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.36 E-value=1.1 Score=41.55 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=61.5
Q ss_pred CCEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-------cCC------CCeEEEEeccCCCccc
Q 018346 130 GHTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL------QNVEIIVADISTFEME 194 (357)
Q Consensus 130 ~~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-------~~~------~~v~~~~~d~~~~~~~ 194 (357)
-.+|-=||+|+ ..++..++.. |.+|+..|.+++.++.++..+.. .+. .++++.. |+.+. -
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a--v 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC--V 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH--h
Confidence 35788899884 3344445544 89999999999988776554321 111 1223221 22110 1
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
...|+|+-+ +.+.++-...+++++.+.++|+.++...+.
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 457888875 445555567889999999999885444333
No 356
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.31 E-value=1.8 Score=39.84 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=55.7
Q ss_pred CCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 129 DGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
++.+||=+||| .|..+..+++.. +++ |+++|.+++.++.+... .. + |..+. ....+|+|+-...-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~~-----i--~~~~~-~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----EV-----L--DPEKD-PRRDYRAIYDASGD 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----cc-----c--Chhhc-cCCCCCEEEECCCC
Confidence 56788888886 467777788776 554 77889888766555431 10 1 11110 12458988864331
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
...+..+.+.|+++|++++.-.
T Consensus 211 ------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 ------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ------HHHHHHHHHhhhcCcEEEEEee
Confidence 3456778889999999987543
No 357
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.23 E-value=5.2 Score=35.15 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=59.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCH-HHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSK-TQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~-~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.++++|-.|++ |.++..+++.+ .+.+|++++.+. ...+.........+. ++.++.+|+.+... .
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35788888854 45555555443 367888887654 233333333333333 67888999886321 0
Q ss_pred cCccEEEEcccccch-------------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYDRIYSIEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|+|+.+...... .....+++.+.+.++.+|.+++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 357988876643210 123456777777776667666543
No 358
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.10 E-value=4.4 Score=35.52 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=50.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++.+||=.|+ +|.++..+++.+ .+.+|++++.+++.+....+.....+. ++.++.+|+.+... . +
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG-RAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4578887764 566666666543 367899999888776665555544443 78899999986321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|+|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 58998877643
No 359
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.05 E-value=2.1 Score=33.08 Aligned_cols=89 Identities=18% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCEEEEECCccc-HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEcccc
Q 018346 130 GHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 206 (357)
Q Consensus 130 ~~~vLDiGcG~G-~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~ 206 (357)
..+|+|+|-|-= ..+..|+++ ++.|+++|+++. ++. . .+.++..|+++.... ...|+|.|.-+-
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-~---g~~~v~DDitnP~~~iY~~A~lIYSiRpp 80 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-E---GLRFVVDDITNPNISIYEGADLIYSIRPP 80 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-c---cceEEEccCCCccHHHhhCccceeecCCC
Confidence 349999998854 356666666 799999999886 222 2 678999999985544 678999986442
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++....+-.+.+. -|..+++...+.
T Consensus 81 ---pEl~~~ildva~a--Vga~l~I~pL~G 105 (129)
T COG1255 81 ---PELQSAILDVAKA--VGAPLYIKPLTG 105 (129)
T ss_pred ---HHHHHHHHHHHHh--hCCCEEEEecCC
Confidence 2333333333332 245566654443
No 360
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.98 E-value=1.3 Score=43.41 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=51.1
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------------
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------------- 193 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------------- 193 (357)
..+++|+-||.|++...+-... .-.|.++|+++.+.+.-+.|.... +....+..|+.++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCccccccccchhhhhhhhh
Confidence 5699999999999999987662 235678999999877777664211 122334455554321
Q ss_pred -c-cCccEEEEcccccch
Q 018346 194 -E-ASYDRIYSIEMFEHM 209 (357)
Q Consensus 194 -~-~~fD~Ii~~~~~~~~ 209 (357)
. ..+|+++..++-+.+
T Consensus 165 ~~~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPF 182 (467)
T ss_pred ccCCCCCEEEEcCCCCcc
Confidence 0 257998887766543
No 361
>PRK07814 short chain dehydrogenase; Provisional
Probab=89.91 E-value=5.7 Score=35.44 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=50.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++.++|=.|+ +|.++..+++.+ .+++|++++.+++.++...+.....+. ++.++.+|+.+... . +
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888885 566666655443 378999999998876665555544343 68888899876421 0 3
Q ss_pred CccEEEEccc
Q 018346 196 SYDRIYSIEM 205 (357)
Q Consensus 196 ~fD~Ii~~~~ 205 (357)
++|+|+.+..
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6899998654
No 362
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.75 E-value=2.8 Score=38.12 Aligned_cols=74 Identities=24% Similarity=0.238 Sum_probs=59.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----------cc-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~- 194 (357)
.+..||==|.|+|- ++..+|++ +++++..|++++..+...+..+..| ++....+|+.+.. .+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57889999998884 67777777 7899999999999988888887766 7888999988742 11
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.|..+
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 678999988754
No 363
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.66 E-value=5.8 Score=37.12 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=59.5
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEe---ccCC----Cccc
Q 018346 124 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA---DIST----FEME 194 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~---d~~~----~~~~ 194 (357)
...+.++.+||=.|||. |..+..+++.. +++|+++|.+++.++.+++ .|.+.+ ..... |+.+ ....
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhccc
Confidence 35667889999999964 66777778776 6789999999987776644 343211 11111 1110 0001
Q ss_pred cCcc----EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYD----RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD----~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..+| +|+-... ....+..+.++|++||++++.-
T Consensus 236 ~g~d~~~d~v~d~~g------~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 236 RGLRSTGWKIFECSG------SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCCcCEEEECCC------ChHHHHHHHHHHhcCCeEEEEC
Confidence 2354 4442211 1345666778999999987753
No 364
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=89.66 E-value=0.94 Score=39.17 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~ 191 (357)
+.+.+++..+.-.+.-|.+||.|.|+++..+.... ..+...+++++..+.-.+...+.... +...+.+|+..+
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa~~-~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAAPG-KLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcCCc-ceEEecccccee
Confidence 34456666665567889999999999999999763 35788888888877766555543333 677777777653
No 365
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=89.62 E-value=7 Score=35.83 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=60.3
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 122 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+....+.++.+||=.|+| .|..+..+++.. +.++++++.+++..+.+++ .|.+.+. +.........+|+|
T Consensus 148 ~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~~----~~~~~~~~~~~d~v 218 (319)
T cd08242 148 LEQVPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR----LGVETVL----PDEAESEGGGFDVV 218 (319)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEe----CccccccCCCCCEE
Confidence 345566788899998764 344555556665 7889999999887766654 3442111 11111112569988
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+.... -...+..+.+.|+++|.++.
T Consensus 219 id~~g------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 219 VEATG------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EECCC------ChHHHHHHHHHhhcCCEEEE
Confidence 86421 13356777889999999886
No 366
>PLN02740 Alcohol dehydrogenase-like
Probab=89.44 E-value=3.4 Score=39.31 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=60.8
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec-----cCC-C-cc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-----IST-F-EM 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d-----~~~-~-~~ 193 (357)
+...+.++.+||=+||| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+. ++..+ +.+ . ..
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM 264 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH
Confidence 34566788999999986 355666677776 66 69999999987776644 34421 22111 111 0 00
Q ss_pred -ccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEe
Q 018346 194 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 233 (357)
Q Consensus 194 -~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 233 (357)
.+.+|+|+-...- ...+......+++| |.+++.-
T Consensus 265 ~~~g~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 265 TGGGVDYSFECAGN------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred hCCCCCEEEECCCC------hHHHHHHHHhhhcCCCEEEEEc
Confidence 1258988764331 24566777788886 8876643
No 367
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.42 E-value=6.7 Score=36.12 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEEE
Q 018346 125 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIY 201 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~Ii 201 (357)
..+.++.+||-.||| .|..+..+++.. +.+|++++.+++..+.+++ .+.+.+ +..+-.... ..+.+|+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADEV--VDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcEE--eccCCcchHHhccCCCCEEE
Confidence 456778899999987 677777777775 7899999999987666533 232111 111100000 114589888
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....- ...+..+.+.|+++|.++...
T Consensus 231 ~~~~~------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVVS------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCCc------HHHHHHHHHhcccCCEEEEEC
Confidence 64221 235677788999999887653
No 368
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=89.15 E-value=1.4 Score=40.90 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=62.4
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----CccccC
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~~ 196 (357)
....+.++.+||-.|+|. |..+..+++.. +.+|+++..+++..+.+++ .+.+.+ .....++.+ ......
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCC
Confidence 345567888999998864 77778888776 7899999888887665533 232211 111111111 111135
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+.... -...+..+.+.|+++|.++...
T Consensus 228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 228 ADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 899987521 1345677888999999987643
No 369
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.90 E-value=1.6 Score=40.81 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=58.4
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccC---CCccccC
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS---TFEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~---~~~~~~~ 196 (357)
......++.+||=.||| .|..+..+++.. +++ |++++.+++..+.+++ .|.+.+ .....+.. .......
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCC
Confidence 34455678899999886 355666677766 665 7899999987665533 343211 10111100 0111135
Q ss_pred cc-EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD-~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+| +|+-... -...+....+.|++||.+++.-
T Consensus 229 ~d~~v~d~~G------~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILETAG------VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 77 5543211 1346777889999999988753
No 370
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.87 E-value=1.2 Score=42.43 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=35.9
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
.+++.++.+||-|.+| |+.+..++...| .+|++||+||.++...+-+..
T Consensus 30 aL~i~~~d~vl~ItSa-G~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 30 ALNIGPDDRVLTITSA-GCNALDYLLAGP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HhCCCCCCeEEEEccC-CchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 3567899999999654 555555555544 799999999998877765543
No 371
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=88.72 E-value=6.1 Score=34.98 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=78.6
Q ss_pred EEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-----CccccCccEEEEcccccc
Q 018346 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~Ii~~~~~~~ 208 (357)
|..-|||-.++..+.+. .-++.++++-|.-....++++. +..++++..+|-.. +|++++=-+|+..++++-
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence 88999999999888866 6689999999988887877776 23489999999654 344455689999999998
Q ss_pred hhhHHHHHHHHHHhcc--cCceEEEEecc
Q 018346 209 MKNYQNLLKKISKWMK--EDTLLFVHHFC 235 (357)
Q Consensus 209 ~~~~~~~l~~~~~~Lk--pgG~l~~~~~~ 235 (357)
-.++..+++.+.+.++ ++|+..+=-|.
T Consensus 169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPi 197 (279)
T COG2961 169 KDEYQRVVEALAEAYKRFATGTYAIWYPI 197 (279)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEEEee
Confidence 8899999999888887 68887774443
No 372
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.71 E-value=8.3 Score=33.83 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=49.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
.+.++|=.| |+|.++..+++.+ .+.+|++++-++.......+.....+. ++.++..|+.+... . +
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG-TAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 356788777 5566666666543 368999999887765555444433322 67788899886421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|+||.+...
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 58999987654
No 373
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.50 E-value=8.6 Score=34.21 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCCEEEEECCccc-HHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWG-SLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G-~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
.++.+|-.|+++| .++..+++.+ .+++|+.++.+....+.+.+.....+ .+.++.+|+.+... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 4678999998873 6666665543 37889888887654333333322222 34577888876320 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|+++.+..+
T Consensus 87 g~ld~lv~nAg~ 98 (258)
T PRK07533 87 GRLDFLLHSIAF 98 (258)
T ss_pred CCCCEEEEcCcc
Confidence 468999988643
No 374
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.31 E-value=9.3 Score=34.44 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=60.5
Q ss_pred EEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--------c--cCccEE
Q 018346 132 TVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------E--ASYDRI 200 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~--~~fD~I 200 (357)
.+|=-|+ |.++..+++.+ .+.+|+.+|.++..++.+.+.....+. ++.++.+|+.+... . +..|++
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4555554 46877777665 467999999988776655555544443 68888999876321 0 458999
Q ss_pred EEcccccch-hh-----------HHHHHHHHHHhcccCceEEE
Q 018346 201 YSIEMFEHM-KN-----------YQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 201 i~~~~~~~~-~~-----------~~~~l~~~~~~LkpgG~l~~ 231 (357)
+.+...... .+ .-.+++.+.+.++++|.+++
T Consensus 81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 987754321 11 22345556666666666544
No 375
>PRK06181 short chain dehydrogenase; Provisional
Probab=88.27 E-value=6.6 Score=34.88 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=48.3
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------cCc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ASY 197 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~~f 197 (357)
.+||-.| |+|.++..+++.+ .+.+|++++.++...+...+.....+. ++.++.+|+.+... . +..
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4677666 4556666655443 367999999988766655555444443 78888999877421 0 257
Q ss_pred cEEEEcccc
Q 018346 198 DRIYSIEMF 206 (357)
Q Consensus 198 D~Ii~~~~~ 206 (357)
|.|+.+...
T Consensus 80 d~vi~~ag~ 88 (263)
T PRK06181 80 DILVNNAGI 88 (263)
T ss_pred CEEEECCCc
Confidence 999987643
No 376
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.19 E-value=3.3 Score=38.12 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cc
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~ 194 (357)
+...+.++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+. ++..+-.++. ..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~--vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDA--VFNYKTVSLEEALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCccHHHHHHHHCC
Confidence 4455678889998873 5677888888886 7899999988886655543 44422 1211111110 01
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..+|+|+.... ...+....++|+++|.++..
T Consensus 210 ~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence 35888875321 24567888999999998764
No 377
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.06 E-value=4.2 Score=38.77 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=47.0
Q ss_pred CEEEEECCcccHHHHHHHHH---CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--c--cCccEEEEc
Q 018346 131 HTVLDVGCGWGSLSLYIAQK---YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E--ASYDRIYSI 203 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~---~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~--~~fD~Ii~~ 203 (357)
.+||=|||| .++...+.. ....+|+..|-|++..+.+.... ..+++..+.|+.+.+. . ..+|+||+.
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----GGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----cccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 479999995 444433332 22379999999988765554432 2278999999987532 1 567999987
Q ss_pred ccc
Q 018346 204 EMF 206 (357)
Q Consensus 204 ~~~ 206 (357)
.+.
T Consensus 76 ~p~ 78 (389)
T COG1748 76 APP 78 (389)
T ss_pred CCc
Confidence 654
No 378
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=88.04 E-value=2.8 Score=31.64 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=49.3
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccchh
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 210 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~ 210 (357)
+|| +.||.|..+..++++ .++.++..|+ ++++......+.+.. +.+|+|+..+-+
T Consensus 2 ~Il-l~C~~GaSSs~la~k------------------m~~~a~~~gi-~~~i~a~~~~e~~~~~~~~Dvill~PQv---- 57 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANA------------------LNKGAKERGV-PLEAAAGAYGSHYDMIPDYDLVILAPQM---- 57 (99)
T ss_pred EEE-EECCCCCCHHHHHHH------------------HHHHHHHCCC-cEEEEEeeHHHHHHhccCCCEEEEcChH----
Confidence 344 567888655555544 4566667777 677777777665433 679999887654
Q ss_pred hHHHHHHHHHHhcccCceEEEEe
Q 018346 211 NYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 211 ~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+-.++.+.+.+.+-|.-+..+
T Consensus 58 --~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 58 --ASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred --HHHHHHHHHHhhhcCCCEEEe
Confidence 344666777777777755543
No 379
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=87.92 E-value=1.2 Score=42.77 Aligned_cols=108 Identities=10% Similarity=0.097 Sum_probs=66.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHHHHH---cCC---CCeEEEEeccCCCccccCccEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRV---LEL---QNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p--~~~v~~vD~s~~~l~~a~~~~~~---~~~---~~v~~~~~d~~~~~~~~~fD~I 200 (357)
.+..+.|+|.|.|.-.-.+....+ .-.++.||.|..+......+.+. .|- .++.|...-+. .+....||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~p-i~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLP-IDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCC-CCcccceeeE
Confidence 456789999887765444443333 35799999999999988887765 111 11111111111 1112569999
Q ss_pred EEcccccchhhH---HHH-HHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFEHMKNY---QNL-LKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~~~~~~---~~~-l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++...++++.+. ... -....+..++|+.+++...+..
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999887332 222 3334566789999888766554
No 380
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.82 E-value=7.8 Score=36.19 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
.+.+||=.|++ |.++..+++.+ .+++|+.++.+++.++...+.+...+. ++.++.+|+.+... . +
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 35678888754 45555554432 278999999998887776666665554 78889999877321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
++|++|.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68999887653
No 381
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.65 E-value=2.5 Score=39.43 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=61.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEec-------cCCCc
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD-------ISTFE 192 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d-------~~~~~ 192 (357)
....+.++.+||-.|+|. |..+..+++.. +.+ |++++.+++..+.+++ .+.+.+ .....+ +....
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 455677888999888764 66777788776 666 8999888877665543 233211 111111 11111
Q ss_pred cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....+|+|+....- ...+....+.|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 11458999865321 235677888999999987643
No 382
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.57 E-value=5.7 Score=36.24 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=57.8
Q ss_pred CEEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--------CC----------CCeEEEEeccCC
Q 018346 131 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--------EL----------QNVEIIVADIST 190 (357)
Q Consensus 131 ~~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--------~~----------~~v~~~~~d~~~ 190 (357)
.+|.=||+|.-+ ++..++.. +.+|+.+|.+++.++.++++.... .+ .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 468888988543 34444443 679999999999988887653211 11 12332 223222
Q ss_pred CccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 191 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
. -...|+|+..-+ +..+....+++++.+.++++..+..
T Consensus 81 a--~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 A--VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred H--hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1 145798887644 3334456778888888877765544
No 383
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=87.53 E-value=1.3 Score=39.87 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=44.1
Q ss_pred HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccchhhHHHHHHHHHHh
Q 018346 143 LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKW 222 (357)
Q Consensus 143 ~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~ 222 (357)
++..|.+..+..+|+|.|.++..++.|.+ .|+ +.-...+... -..+|+|+..-+... ...+++++...
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~--~~~~~~~~~~---~~~~DlvvlavP~~~---~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGI--IDEASTDIEA---VEDADLVVLAVPVSA---IEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTS--SSEEESHHHH---GGCCSEEEE-S-HHH---HHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCC--eeeccCCHhH---hcCCCEEEEcCCHHH---HHHHHHHhhhh
Confidence 45677777777999999999997766643 343 1112222111 145799998776653 35666777776
Q ss_pred cccCceE
Q 018346 223 MKEDTLL 229 (357)
Q Consensus 223 LkpgG~l 229 (357)
+++|+.+
T Consensus 69 ~~~~~iv 75 (258)
T PF02153_consen 69 LKPGAIV 75 (258)
T ss_dssp S-TTSEE
T ss_pred cCCCcEE
Confidence 7666543
No 384
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.37 E-value=3.1 Score=38.02 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=58.3
Q ss_pred EEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc---C-----C---------CCeEEEEeccCCCc
Q 018346 132 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---E-----L---------QNVEIIVADISTFE 192 (357)
Q Consensus 132 ~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~---~-----~---------~~v~~~~~d~~~~~ 192 (357)
+|.=||+|. +.++..+++. +.+|+.+|.+++.++.+.+..... + + .++++. .|..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 677788874 2344445544 679999999999998876543211 1 0 012222 222211
Q ss_pred cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 193 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
-...|+|+..-+ ....-...++.++.+.++|+..+.+.+.+
T Consensus 79 -~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 -VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 145799886544 23333456778888888888776555444
No 385
>PRK08265 short chain dehydrogenase; Provisional
Probab=87.20 E-value=10 Score=33.77 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.++++|-.|++ |.++..+++.+ .+++|+.+|.+++.++...+. .+. ++.++.+|+.+... . +
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LGE-RARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hCC-eeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 35688888854 44555554433 278999999987654443332 232 68889999986421 0 3
Q ss_pred CccEEEEccc
Q 018346 196 SYDRIYSIEM 205 (357)
Q Consensus 196 ~fD~Ii~~~~ 205 (357)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6799988764
No 386
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.13 E-value=1.9 Score=35.20 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=32.3
Q ss_pred EECCccc--HHHHHHH--HHCCCcEEEEEcCCHHHHHHHHHH--HHHcCC-CCeEEEEecc
Q 018346 135 DVGCGWG--SLSLYIA--QKYSNCKITGICNSKTQKEFIEEQ--CRVLEL-QNVEIIVADI 188 (357)
Q Consensus 135 DiGcG~G--~~~~~la--~~~p~~~v~~vD~s~~~l~~a~~~--~~~~~~-~~v~~~~~d~ 188 (357)
|||++.| .....+. ...|+.+|+++|++|..++..+++ +..... ..+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6655553 345788999999999999988888 544422 1355555443
No 387
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.08 E-value=1.7 Score=40.40 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=58.6
Q ss_pred cCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----CccccCc
Q 018346 125 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEASY 197 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~~f 197 (357)
....++.+||-.|+| .|..+..+++.. +. .+++++.++...+.+++ .+.+.+ .....++.+ ....+.+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 345678899998875 466777788876 54 78888888776655543 232111 111111111 1111468
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
|+|+....- ...+....+.|+++|+++..
T Consensus 238 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 988864221 24677788899999998754
No 388
>PRK06701 short chain dehydrogenase; Provisional
Probab=87.05 E-value=9.4 Score=34.74 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=59.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHH-HHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~-~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||-.|++ |.++..+++.+ .+.+|+.++.++. ..+.........+. ++.++.+|+.+... .
T Consensus 45 ~~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788888864 44444444433 2788988887642 23333333333343 68889999876321 0
Q ss_pred cCccEEEEcccccc----h----------------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEH----M----------------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~----~----------------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|+||.+..... + .....+++.+.+.++++|.+++...
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 35799987654311 1 1123455556666677777666443
No 389
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.76 E-value=1.6 Score=41.65 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=50.7
Q ss_pred cCCCCeEEEEeccCCCcc---ccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 176 LELQNVEIIVADISTFEM---EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 176 ~~~~~v~~~~~d~~~~~~---~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
.++++|+++.+++.+... ++++|.++....++++ ....+.++.+.+.++|||+++.-....+
T Consensus 272 ~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 272 ARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred cCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 345799999999887532 4889999999999998 4577889999999999999999665443
No 390
>PLN02494 adenosylhomocysteinase
Probab=86.74 E-value=4 Score=39.89 Aligned_cols=100 Identities=7% Similarity=-0.002 Sum_probs=58.9
Q ss_pred HHHHHHHcCC-CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 118 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 118 l~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
++.+++..++ -.+++|+=+|+|. |......++.+ +++|+++|.++.....+. ..|. .+. ++.+.. .
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~----~~G~---~vv--~leEal--~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQAL----MEGY---QVL--TLEDVV--S 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHH----hcCC---eec--cHHHHH--h
Confidence 3344444333 3689999999984 44444444445 789999999886433222 2233 211 222211 4
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..|+|++...-. .-+.....+.+||||+++..-.
T Consensus 309 ~ADVVI~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 EADIFVTTTGNK-----DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred hCCEEEECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence 579998743322 2234667789999999877543
No 391
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.73 E-value=2 Score=40.41 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=65.5
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc---cCccEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRI 200 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~I 200 (357)
+...+|.+|+|.+|-.|.-+..++.-.+ ..++.|+|.++.-.+..++.....|.+.++...+|+...+.+ ...-.|
T Consensus 209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~i 288 (413)
T KOG2360|consen 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTYI 288 (413)
T ss_pred cCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeEE
Confidence 4456789999999999999999987653 579999999999999999999999988888889998874322 345567
Q ss_pred EEcccc
Q 018346 201 YSIEMF 206 (357)
Q Consensus 201 i~~~~~ 206 (357)
++.++.
T Consensus 289 L~Dpsc 294 (413)
T KOG2360|consen 289 LVDPSC 294 (413)
T ss_pred EeCCCC
Confidence 766654
No 392
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.56 E-value=4 Score=34.45 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=61.6
Q ss_pred EEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-------cC----------CCCeEEEEeccCCCc
Q 018346 132 TVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LE----------LQNVEIIVADISTFE 192 (357)
Q Consensus 132 ~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-------~~----------~~~v~~~~~d~~~~~ 192 (357)
+|-=+|+|+=+ ++..++.. |.+|+.+|.+++.++.+++.+.. .+ ..++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 35667887533 44444444 89999999999999888877654 11 12344 33454443
Q ss_pred cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 193 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
...|+|+=.- .+.++-.+++++++.+.+.|+-.+...+.+..
T Consensus 77 --~~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 77 --VDADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp --CTESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred --hhhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 2578877543 45667778999999999999998777655443
No 393
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.55 E-value=10 Score=35.28 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=62.6
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEe-ccCC-Cc--ccc
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DIST-FE--MEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~-d~~~-~~--~~~ 195 (357)
+...+.++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++. .|.+.+ ..... |..+ .. ...
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCC
Confidence 3456678899999986 5677888888876 78999999888765555432 344221 11111 1111 00 014
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+|+|+-... ...+..+.++|+++|.++..
T Consensus 221 gvd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG-------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC-------HHHHHHHHHHhccCcEEEEe
Confidence 5888875321 24567788999999998864
No 394
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=86.32 E-value=8.4 Score=36.35 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=55.7
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-cccCccEEEEcc
Q 018346 127 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIE 204 (357)
Q Consensus 127 ~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~Ii~~~ 204 (357)
..++.+||-.|+| .|..+..+++.. ++++++++.+++....+ ++..|.+.+ +...+..... ..+.+|+|+-..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~---~~~~Ga~~v-i~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEA---INRLGADSF-LVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhH---HHhCCCcEE-EcCCCHHHHHhhcCCCCEEEECC
Confidence 4577888889886 466777777776 78888888776533222 223443211 1011110110 013578887532
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ....+..+.+.|++||.++..-
T Consensus 256 g------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 256 S------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred C------CHHHHHHHHHHhcCCcEEEEeC
Confidence 2 1235677888999999988653
No 395
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.30 E-value=13 Score=33.17 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 194 (357)
.++++|-.|+++ +.++..+++.+ .+++|+.++.+....+..++......-.++.++..|+.+... .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467899999873 66666666554 378888886543211222222222211267888899876320 1
Q ss_pred cCccEEEEccc
Q 018346 195 ASYDRIYSIEM 205 (357)
Q Consensus 195 ~~fD~Ii~~~~ 205 (357)
+++|+++.+..
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 56899887654
No 396
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.25 E-value=8.2 Score=35.47 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=51.2
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
.+.+|+=+|+|. |......++.. +++|+++|.++...+.+ ...|. +++ +..++... ..+|+||..-+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~----~~~G~---~~~--~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARI----TEMGL---SPF--HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH----HHcCC---eee--cHHHHHHHhCCCCEEEECCCh
Confidence 578999999974 33333344444 78999999998754433 23333 222 11111111 568999986432
Q ss_pred cchhhHHHHHHHHHHhcccCceEEE
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.-+-+...+.++||++++-
T Consensus 221 ------~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 221 ------LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred ------hhhhHHHHHcCCCCcEEEE
Confidence 1233456677899876553
No 397
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.24 E-value=10 Score=38.12 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=51.1
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHc-----CC---CCeEEEEeccCCCcc-
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVL-----EL---QNVEIIVADISTFEM- 193 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~-----~~---~~v~~~~~d~~~~~~- 193 (357)
.+...+.+||-.|+ +|.++..+++.+ .+.+|++++.+.+.+....+.+... +. .++.++.+|+.+...
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34456778887775 466666665543 3789999998887665443333221 11 258899999987421
Q ss_pred --c-cCccEEEEccc
Q 018346 194 --E-ASYDRIYSIEM 205 (357)
Q Consensus 194 --~-~~fD~Ii~~~~ 205 (357)
. +..|+||++..
T Consensus 154 ~~aLggiDiVVn~AG 168 (576)
T PLN03209 154 GPALGNASVVICCIG 168 (576)
T ss_pred HHHhcCCCEEEEccc
Confidence 1 56899988754
No 398
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=86.18 E-value=5.1 Score=29.98 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=46.8
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccch
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 209 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~ 209 (357)
.+|| +-||+|..+..++.+ .++.+++.|+ ++++...+..+.... ..+|+|+..+-+.
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k------------------~~~~~~~~gi-~~~v~a~~~~~~~~~~~~~Dvill~pqi~-- 61 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK------------------MNKAAEEYGV-PVKIAAGSYGAAGEKLDDADVVLLAPQVA-- 61 (95)
T ss_pred cEEE-EECCCchhHHHHHHH------------------HHHHHHHCCC-cEEEEEecHHHHHhhcCCCCEEEECchHH--
Confidence 4666 669998766655543 3455666777 677777776654322 5689999986553
Q ss_pred hhHHHHHHHHHHhcccCceEEEE
Q 018346 210 KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 210 ~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..++++.+.+.+-|.=+..
T Consensus 62 ----~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 62 ----YMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred ----HHHHHHHHHhhhcCCCEEE
Confidence 3345555555554444443
No 399
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.18 E-value=3.5 Score=34.94 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=60.4
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
...+.+||-+|.= +|.....+..+ .++|+.+|+.|.+ +... . ++|+|... .. +.++.+|+|+-...
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~----r~~l-p---~~v~Fr~~--~~-~~~G~~DlivDlTG 108 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFM----RGFL-P---NNVKFRNL--LK-FIRGEVDLIVDLTG 108 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHH----HhcC-C---CCccHhhh--cC-CCCCceeEEEeccc
Confidence 4567899999874 67776666655 6899999999975 2211 1 25666554 22 22378999998887
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+.++. ++++ +-+.| +.++++.|.....
T Consensus 109 lGG~~--Pe~L----~~fnp-~vfiVEdP~gn~~ 135 (254)
T COG4017 109 LGGIE--PEFL----AKFNP-KVFIVEDPKGNVF 135 (254)
T ss_pred cCCCC--HHHH----hccCC-ceEEEECCCCCCC
Confidence 77763 2333 33444 5677888766443
No 400
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=86.06 E-value=7 Score=36.90 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=60.5
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec----cCCCc---c
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD----ISTFE---M 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d----~~~~~---~ 193 (357)
+...+.++.+||=.|+| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+.+ +-..+ +.+.. .
T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~v~~~~ 253 (368)
T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK----FGATDC-VNPKDHDKPIQQVLVEMT 253 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCEE-EcccccchHHHHHHHHHh
Confidence 44566788999999875 355666677766 66 79999999987766643 444211 11111 11100 0
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEe
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 233 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 233 (357)
.+.+|+|+-... -...+....+.|+++ |++++.-
T Consensus 254 ~~g~d~vid~~g------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 254 DGGVDYTFECIG------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCCcEEEECCC------ChHHHHHHHHhhccCCCeEEEEc
Confidence 135898876321 124567778889887 9887653
No 401
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.05 E-value=11 Score=34.87 Aligned_cols=95 Identities=18% Similarity=0.360 Sum_probs=59.1
Q ss_pred cCCCCC--CEEEEECC--cccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------c
Q 018346 125 SRLEDG--HTVLDVGC--GWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M 193 (357)
Q Consensus 125 ~~~~~~--~~vLDiGc--G~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~ 193 (357)
..+.++ .+||=.|+ |.|..+..+++.. ++ +|++++.+++..+.+++. .|.+.+ +..+-.++. .
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~v--i~~~~~~~~~~i~~~~ 221 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDAA--INYKTDNVAERLRELC 221 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcEE--EECCCCCHHHHHHHHC
Confidence 344444 78988885 5778888888886 77 899999988765555442 344221 211111110 0
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+|+|+.... . ..+..+.++|+++|+++..
T Consensus 222 ~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 222 PEGVDVYFDNVG-----G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred CCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEE
Confidence 135898885322 1 1346778899999998864
No 402
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=86.00 E-value=4.6 Score=38.86 Aligned_cols=101 Identities=10% Similarity=0.126 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEEC-Cc-ccHHHHHHHHHCC-C-cEEEEEcCCHHHHHHHHHHHHHc----CCCCeEEEEe----ccCC--
Q 018346 125 SRLEDGHTVLDVG-CG-WGSLSLYIAQKYS-N-CKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVA----DIST-- 190 (357)
Q Consensus 125 ~~~~~~~~vLDiG-cG-~G~~~~~la~~~p-~-~~v~~vD~s~~~l~~a~~~~~~~----~~~~v~~~~~----d~~~-- 190 (357)
..+.++.+||=+| +| .|..+..+++... + .+|+++|.+++.++.+++..... |. ...++.. |+.+
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATL 249 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHH
Confidence 4566788999887 34 6777787887641 2 37999999999888887642111 22 1112211 1111
Q ss_pred --CccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 191 --FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 191 --~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
......+|+|+.... ....+....++++++|.+++.
T Consensus 250 ~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 250 MELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 011135898886422 134667788899988876653
No 403
>PLN02827 Alcohol dehydrogenase-like
Probab=85.94 E-value=6.8 Score=37.24 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=58.4
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe----ccCC-Cc--cc
Q 018346 124 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DIST-FE--ME 194 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~----d~~~-~~--~~ 194 (357)
...+.++.+||-.|+| .|..+..+++.. ++ .|+++|.+++..+.+++ .|.+.+ +-.. ++.+ +. ..
T Consensus 188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~----lGa~~~-i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 188 VADVSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKT----FGVTDF-INPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCcEE-EcccccchHHHHHHHHHhC
Confidence 3456788999999875 355666677766 55 68899998887665543 444211 1111 1111 00 01
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEE
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 232 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 232 (357)
+.+|+|+-...- ...+....+.|++| |++++.
T Consensus 262 ~g~d~vid~~G~------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSFECVGD------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEEECCCC------hHHHHHHHHhhccCCCEEEEE
Confidence 358888754321 23466777889998 998764
No 404
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=85.80 E-value=6.3 Score=34.67 Aligned_cols=76 Identities=14% Similarity=0.119 Sum_probs=50.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----------c-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~- 194 (357)
++.+||=.|+ +|.++..+++.+ .+++|++++.++..++...+.+...+..++.++..|+..... .
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 5778999985 566666655443 367999999998776666555555444467778888753210 1
Q ss_pred -cCccEEEEccc
Q 018346 195 -ASYDRIYSIEM 205 (357)
Q Consensus 195 -~~fD~Ii~~~~ 205 (357)
++.|.|+.+..
T Consensus 90 ~~~id~vi~~Ag 101 (247)
T PRK08945 90 FGRLDGVLHNAG 101 (247)
T ss_pred hCCCCEEEECCc
Confidence 46899988763
No 405
>PRK08703 short chain dehydrogenase; Provisional
Probab=85.70 E-value=5.7 Score=34.75 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=48.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------------- 192 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------------- 192 (357)
++++||-.|| +|.++..+++.+ .+.+|++++.++..++.....+...+...+.++..|+.+..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 3578999985 555555555443 37899999999887666655554433335566777765321
Q ss_pred cccCccEEEEccc
Q 018346 193 MEASYDRIYSIEM 205 (357)
Q Consensus 193 ~~~~fD~Ii~~~~ 205 (357)
..+..|.|+.+..
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 0035798887664
No 406
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=85.70 E-value=3.4 Score=38.37 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=59.6
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec------cCCCcccc
Q 018346 124 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVAD------ISTFEMEA 195 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d------~~~~~~~~ 195 (357)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.++ ..+.+ .++..+ +.......
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~--~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAR----ELGAD--DTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCC--EEecCccccHHHHHHHhCCC
Confidence 34566788999998765 66777777775 665 999998887655443 23331 111111 11111113
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+.... ....+..+.++|+++|.++...
T Consensus 227 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAAG------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 4999986521 1345677889999999977643
No 407
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.69 E-value=6.7 Score=36.08 Aligned_cols=102 Identities=9% Similarity=0.087 Sum_probs=73.6
Q ss_pred CCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCC--C-CeEEEEeccCCCccc----------c
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL--Q-NVEIIVADISTFEME----------A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~--~-~v~~~~~d~~~~~~~----------~ 195 (357)
...|+-+|||-=.=+..+- .| +.+|+-+|. |+.++.=++.++..+. + .++++..|+.+.... .
T Consensus 93 ~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLD--WPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeecC--CCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 4789999999644333322 23 478888898 7777777777777664 2 689999999842211 2
Q ss_pred CccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.-=++++-+++.++ +...++++.+.....||..++....
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 23478888888888 4577899999999999999888764
No 408
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.57 E-value=5 Score=36.96 Aligned_cols=104 Identities=23% Similarity=0.233 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEECC-cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEE-EeccCCCccccCccE
Q 018346 123 ERSRLEDGHTVLDVGC-GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEII-VADISTFEMEASYDR 199 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc-G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~-~~d~~~~~~~~~fD~ 199 (357)
...+..||++|-=+|. |-|.++..+|+.. +.+|+++|-|..--+ +.++..|.+. +.+. ..|..+- ..+..|.
T Consensus 175 k~~g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kke---ea~~~LGAd~fv~~~~d~d~~~~-~~~~~dg 249 (360)
T KOG0023|consen 175 KRSGLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKE---EAIKSLGADVFVDSTEDPDIMKA-IMKTTDG 249 (360)
T ss_pred HHcCCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHH---HHHHhcCcceeEEecCCHHHHHH-HHHhhcC
Confidence 3456678888777775 4899999999998 899999999875333 3333455431 1111 1111110 0133444
Q ss_pred EEEccc-ccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEM-FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++-.-+ + ....++.+.++||++|.+++.-...
T Consensus 250 ~~~~v~~~-----a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 250 GIDTVSNL-----AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred cceeeeec-----cccchHHHHHHhhcCCEEEEEeCcC
Confidence 332111 1 2344667788999999998865433
No 409
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=85.50 E-value=6.9 Score=33.04 Aligned_cols=79 Identities=8% Similarity=0.028 Sum_probs=51.5
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCeEEEEeccCCCcc----------ccC
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM----------EAS 196 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~~~----------~~~ 196 (357)
...|+.+|||-=.....+....++..++-+|. |+.++.-++.++..+. .+.+++.+|+.+... .+.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 34899999999888888887655788899998 6667666666655422 135679999986321 123
Q ss_pred ccEEEEcccccch
Q 018346 197 YDRIYSIEMFEHM 209 (357)
Q Consensus 197 fD~Ii~~~~~~~~ 209 (357)
.-++++-.++.++
T Consensus 158 ptl~i~Egvl~Yl 170 (183)
T PF04072_consen 158 PTLFIAEGVLMYL 170 (183)
T ss_dssp EEEEEEESSGGGS
T ss_pred CeEEEEcchhhcC
Confidence 4477788888888
No 410
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.40 E-value=5.9 Score=34.73 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=49.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
++.++|-.|+ +|.++..+++.+ .+.+|+.++.++..++.+.+.....+. ++.++..|+.+... . +
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678898885 455555555433 267999999998776666555554443 78888999876311 0 3
Q ss_pred CccEEEEccc
Q 018346 196 SYDRIYSIEM 205 (357)
Q Consensus 196 ~fD~Ii~~~~ 205 (357)
.+|.|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 5799998764
No 411
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.27 E-value=7.2 Score=35.43 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=58.8
Q ss_pred CEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH-------HHcCC-C---------CeEEEEeccCCC
Q 018346 131 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL-Q---------NVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~-------~~~~~-~---------~v~~~~~d~~~~ 191 (357)
.+|-=||+|. +.++..++.. +.+|+++|++++.++.+++.+ .+.+. + ++.+ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 3677788884 4455555555 679999999999987655332 22221 1 2222 223221
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
....|+|+..-+ +.+.-...+++++.+.++|+..+...+.
T Consensus 80 --~~~aDlVi~av~-e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 --LKDADLVIEAAT-ENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred --hccCCeeeeccc-ccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 145798887532 2333346889999999999887644333
No 412
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=85.18 E-value=1.1 Score=37.43 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC--------------CCc-
Q 018346 129 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS--------------TFE- 192 (357)
Q Consensus 129 ~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~--------------~~~- 192 (357)
++.+|+=+|.| .|.-+..++..+ +++++..|..+..++.... .+ ..++..+.. +.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~----~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLES----LG---AYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHH----TT---TEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhc----cc---CceEEEcccccccccccchhhhhHHHH
Confidence 46899999998 466777777777 7899999999886554433 22 122222210 001
Q ss_pred -----cc---cCccEEEEcccccchhhHHHHHHHHHHhcccCceE
Q 018346 193 -----ME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 193 -----~~---~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l 229 (357)
+. ..+|+|+.+..+..-..+.-+-++..+.|+||..+
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvI 135 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVI 135 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEE
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceE
Confidence 11 45899998776654445555566677888866653
No 413
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.01 E-value=12 Score=35.78 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=61.4
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe---ccCC----Cccc
Q 018346 124 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DIST----FEME 194 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~---d~~~----~~~~ 194 (357)
...+.++.+||=.|+| .|..+..+++.. +++ ++.+|.+++.++.+++ .|.+ .+... +..+ ....
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 180 TAGVGPGSTVYIAGAGPVGLAAAASAQLL-GAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcCC
Confidence 3556778888888876 455666677766 554 6677888877666654 3442 12111 1111 0111
Q ss_pred cCccEEEEcccccc-------h-hhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEH-------M-KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~-------~-~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+|+|+-...... . .+....++...+.+++||.+++.-.
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 35898885433210 0 1123578888899999999988554
No 414
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=84.99 E-value=1.7 Score=38.63 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=61.9
Q ss_pred EEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-----CccccCccEEEEcccccc
Q 018346 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~Ii~~~~~~~ 208 (357)
|..-+||-.++..+.+. .-+.+.+|+-+.-.+..++++... .+|.+...|..+ +|+..+=-+|+..++++.
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 77888988888888765 679999999999888887776542 389999999765 233344578999999998
Q ss_pred hhhHHHHHHHHHHhcc--cCceEEEEec
Q 018346 209 MKNYQNLLKKISKWMK--EDTLLFVHHF 234 (357)
Q Consensus 209 ~~~~~~~l~~~~~~Lk--pgG~l~~~~~ 234 (357)
-.++.++.+.+.+.+| |.|++++=-|
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 8899999888888887 7888777444
No 415
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.91 E-value=13 Score=33.87 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=58.7
Q ss_pred CEEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------CC----------CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL----------QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~~----------~~v~~~~~d~~~~ 191 (357)
.+|.=||+|.-+ ++..++.. +.+|+..|.+++.++.+.+..... +. .++++. .|....
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh
Confidence 478888988543 44444544 779999999999888765433221 21 123322 233211
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
...|+|+..-+ +...-...+++.+...++|+..++..+.+
T Consensus 82 ---~~aD~Vieavp-e~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 ---ADCDLVIEAAT-EDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred ---cCCCEEEEcCc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 45798887533 22223456788888899998876544433
No 416
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.82 E-value=10 Score=36.56 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=54.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
..+++|+=+|+|. |......++.+ +++|+++|.++.....+. ..|. .+ .++.+. -...|+|++...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~----~~G~---~v--~~leea--l~~aDVVItaTG- 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAA----MDGF---RV--MTMEEA--AKIGDIFITATG- 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHH----hcCC---Ee--CCHHHH--HhcCCEEEECCC-
Confidence 4688999999996 44444455555 789999999886433222 2232 21 122221 145799887532
Q ss_pred cchhhHHHHHH-HHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLK-KISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 234 (357)
...++. .....+|||++++....
T Consensus 260 -----~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 260 -----NKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred -----CHHHHHHHHHhcCCCCcEEEEECC
Confidence 234444 47788999998877533
No 417
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.66 E-value=8.8 Score=37.16 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=53.1
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.+.+|+=+|+|. |......++.+ +++|+.+|.++.....+. ..|. ++ .++.+.. ..+|+|+....
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~----~~G~---~v--~~l~eal--~~aDVVI~aTG-- 276 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAA----MDGF---RV--MTMEEAA--ELGDIFVTATG-- 276 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHH----hcCC---Ee--cCHHHHH--hCCCEEEECCC--
Confidence 688999999985 33333344444 789999999986533222 1232 21 1222211 46899987532
Q ss_pred chhhHHHHHH-HHHHhcccCceEEEEe
Q 018346 208 HMKNYQNLLK-KISKWMKEDTLLFVHH 233 (357)
Q Consensus 208 ~~~~~~~~l~-~~~~~LkpgG~l~~~~ 233 (357)
. ..++. .....+|+|++++..-
T Consensus 277 ---~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 277 ---N-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ---C-HHHHHHHHHhcCCCCCEEEEcC
Confidence 1 33454 5778899999877643
No 418
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=84.66 E-value=16 Score=34.37 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEec--cCC-C--ccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD--IST-F--EME 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d--~~~-~--~~~ 194 (357)
+...+.++.+||=.|+| .|..+..+++.. ++ +|+++|.++...+.+++ .|.+.+ .....+ +.+ + ...
T Consensus 178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhC
Confidence 44556788999999875 355666677776 66 79999999887666643 343221 111100 000 0 001
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEec
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 234 (357)
..+|+|+-...- ...+....+.|+++ |.+++...
T Consensus 253 ~g~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 253 GGVDYSFECTGN------ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCEEEECCCC------hHHHHHHHHhcccCCCEEEEEcC
Confidence 358988853221 24567778889885 98877543
No 419
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=84.58 E-value=11 Score=35.31 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=56.5
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeE-EEEecc-------CCCccccCc
Q 018346 128 EDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVE-IIVADI-------STFEMEASY 197 (357)
Q Consensus 128 ~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~-~~~~d~-------~~~~~~~~f 197 (357)
.++.+||=.|+| .|..+..+++.. ++ +|++++.+++..+.++ ..|.+.+- ....+. .+......+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 377888888865 355566677776 67 8999998887655443 34442211 111111 011111468
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|+|+....- ...+....+.|+++|.++..-
T Consensus 251 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEASGH------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEECCCC------hHHHHHHHHHhccCCEEEEEc
Confidence 988864211 235667788999999987643
No 420
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.29 E-value=17 Score=32.45 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=45.3
Q ss_pred CCCEEEEECCccc-HHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWG-SLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G-~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++++|=.|+++| .++..+++.+ .+++|+.++.+....+.+.+ ..... ..+.++.+|+.+... .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL-GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc-CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 4678999998763 5555555443 37888888876432222222 22221 245678889876320 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+++|++|.+..+
T Consensus 83 g~iD~linnAg~ 94 (262)
T PRK07984 83 PKFDGFVHSIGF 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 468999988753
No 421
>PRK06128 oxidoreductase; Provisional
Probab=84.23 E-value=16 Score=33.40 Aligned_cols=102 Identities=10% Similarity=0.054 Sum_probs=59.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHH--HHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADISTFEM---------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~--~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~- 194 (357)
.+++||=.|+ +|.++..+++.+ .+.+|+.+..+.. ..+...+.....+. ++.++.+|+.+... .
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578888885 455555555443 3678887765432 22333333333343 67888899886321 0
Q ss_pred -cCccEEEEcccccc----h-----hh-----------HHHHHHHHHHhcccCceEEEE
Q 018346 195 -ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+..|++|.+..... + ++ .-.+++.+.+.++++|.++..
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 36899998775421 1 11 223556666777788876664
No 422
>PRK08324 short chain dehydrogenase; Validated
Probab=83.99 E-value=9.8 Score=39.39 Aligned_cols=103 Identities=12% Similarity=0.042 Sum_probs=63.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----cc------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----ME------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~------~ 195 (357)
.+++||=.|+ +|.++..+++.+ .+.+|+++|.++..++.+.+..... .++.++.+|+.+.. .. +
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578888875 344555544432 2779999999998766655544332 37888999987632 00 3
Q ss_pred CccEEEEcccccch-------------------hhHHHHHHHHHHhccc---CceEEEEec
Q 018346 196 SYDRIYSIEMFEHM-------------------KNYQNLLKKISKWMKE---DTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~-------------------~~~~~~l~~~~~~Lkp---gG~l~~~~~ 234 (357)
.+|+||.+...... .....+++.+.+.+++ ||.+++...
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 68999987753211 0133456666777766 577666543
No 423
>PRK12829 short chain dehydrogenase; Provisional
Probab=83.75 E-value=16 Score=32.34 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++.++|-.|++ |.++..+++.+ .+.+|++++-+++.++...+... +. ++.++.+|+.+... . +
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--GA-KVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cC-ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 67899988875 66666655443 26789999988776554433322 12 56888899876321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
++|.|+.+...
T Consensus 86 ~~d~vi~~ag~ 96 (264)
T PRK12829 86 GLDVLVNNAGI 96 (264)
T ss_pred CCCEEEECCCC
Confidence 68999976643
No 424
>PRK07890 short chain dehydrogenase; Provisional
Probab=83.55 E-value=8.4 Score=34.00 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=50.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
.+++||=.|+ +|.++..+++.+ .+++|++++.++..++...+.....+. ++.++..|+.+... . +
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4578887776 445555544433 278999999988876666555544443 68889999876321 0 4
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|+|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68999987743
No 425
>PRK09072 short chain dehydrogenase; Provisional
Probab=83.48 E-value=19 Score=31.85 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=48.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------ccC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------EAS 196 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~~~ 196 (357)
++.+||=.|++. .++..+++.+ .+.+|++++.+++.++...... ..+ .++.++.+|+.+... .+.
T Consensus 4 ~~~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASG-GIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 356788887654 4444444332 2789999999887766555444 222 278889999877421 035
Q ss_pred ccEEEEcccc
Q 018346 197 YDRIYSIEMF 206 (357)
Q Consensus 197 fD~Ii~~~~~ 206 (357)
.|.|+.+...
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7999987654
No 426
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=83.42 E-value=22 Score=33.87 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=66.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHH----HHHHHHHC---CCcEEEEEcC----CHHHHHHHHHHHH----HcCCCCeEEEE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSL----SLYIAQKY---SNCKITGICN----SKTQKEFIEEQCR----VLELQNVEIIV 185 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~----~~~la~~~---p~~~v~~vD~----s~~~l~~a~~~~~----~~~~~~v~~~~ 185 (357)
+++...-.+...|+|+|.|.|.- ...|+.+- |..++||++. +...++.+.+++. ..|+ ..+|..
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~~ 180 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFHP 180 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEEe
Confidence 44444445678999999999963 34444432 4469999999 7888877777654 3455 444444
Q ss_pred e---ccCCCccc----cCccEEEE--cccccchh-------h-HHHHHHHHHHhcccCceEEEEeccC
Q 018346 186 A---DISTFEME----ASYDRIYS--IEMFEHMK-------N-YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 186 ~---d~~~~~~~----~~fD~Ii~--~~~~~~~~-------~-~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
. ++.++... ..=+.++. ...+|++. + ...+++.+ +.|+|.-+++++.-..
T Consensus 181 v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ea~ 247 (374)
T PF03514_consen 181 VVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQEAD 247 (374)
T ss_pred cccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEeecCC
Confidence 2 33333211 12233333 33456663 1 23355554 5789997777765543
No 427
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.29 E-value=4.4 Score=37.85 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=60.5
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----Ccccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~ 195 (357)
......++.+||=.|+| .|..+..+++.. ++ .|++++.+++..+.+++ .|.+.+ .....++.+ .....
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCC
Confidence 44556778888888864 355666677766 66 89999998887666643 343211 111111111 11113
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+-.... ...++.+.+.|+++|.++..-
T Consensus 241 ~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAGV------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCCC------HHHHHHHHHhccCCCEEEEEc
Confidence 48998865321 235677888999999987643
No 428
>PRK09291 short chain dehydrogenase; Provisional
Probab=83.22 E-value=7.9 Score=34.12 Aligned_cols=73 Identities=12% Similarity=0.065 Sum_probs=48.5
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----ccCccEEEEc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASYDRIYSI 203 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~fD~Ii~~ 203 (357)
.+||-.|+ +|.++..+++.+ .+++|++++-++...+.........+. ++.++.+|+.+... ....|+|+.+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 46887776 455555555443 378999998887766555554444444 68889999876421 1378999987
Q ss_pred cc
Q 018346 204 EM 205 (357)
Q Consensus 204 ~~ 205 (357)
..
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 54
No 429
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.18 E-value=32 Score=31.53 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=57.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEE
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 201 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii 201 (357)
....+.++.+||=.|||. |..+..+++.. +.+|++++.+++..+.++ ..|.+ .++ +.... ....+|+++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~----~~g~~--~~~--~~~~~-~~~~vD~vi 230 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAR----ELGAD--WAG--DSDDL-PPEPLDAAI 230 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHH----HhCCc--EEe--ccCcc-CCCcccEEE
Confidence 445566778888887752 33445556554 789999998887555542 23431 111 11111 124588877
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..... ...++.+.+.|+++|.++...
T Consensus 231 ~~~~~------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAPV------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCCc------HHHHHHHHHHhhcCCEEEEEc
Confidence 54221 246788899999999988643
No 430
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.95 E-value=3.8 Score=38.35 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=60.6
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----Ccccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~ 195 (357)
....+.++.+||-.|+| .|..+..+++.. +. .++++|.+++..+.+++ .|.+.+ .....+..+ .....
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCC
Confidence 44556778899999876 456666777766 55 69999999876665553 343211 111111100 11113
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+|+|+....- ...+..+.++|+++|+++..
T Consensus 235 ~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGGG------QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCCC------HHHHHHHHHHhhcCCEEEEe
Confidence 58988853221 24677888999999998754
No 431
>PRK07454 short chain dehydrogenase; Provisional
Probab=82.90 E-value=8 Score=33.80 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=51.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
..+++|-.|+ +|.++..+++.+ .+.+|++++.++...+...+.....+. ++.++.+|+.+... . +
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGV-KAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567888885 566666665543 367999999988766655554444333 78889999987421 1 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|+++.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57999987654
No 432
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=82.74 E-value=6.3 Score=29.51 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=44.3
Q ss_pred ECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccchhhHHH
Q 018346 136 VGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQN 214 (357)
Q Consensus 136 iGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~ 214 (357)
+.||+|.-+..+++. .++.++..|+ .+++...+..+.... ..+|+|++.+-+ ..
T Consensus 4 ~~Cg~G~sTS~~~~k------------------i~~~~~~~~~-~~~v~~~~~~~~~~~~~~~Diil~~Pqv------~~ 58 (96)
T cd05564 4 LVCSAGMSTSILVKK------------------MKKAAEKRGI-DAEIEAVPESELEEYIDDADVVLLGPQV------RY 58 (96)
T ss_pred EEcCCCchHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhcCCCCEEEEChhH------HH
Confidence 458888776655543 3566667777 577777777654322 679999987644 33
Q ss_pred HHHHHHHhcccCceEEEE
Q 018346 215 LLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 215 ~l~~~~~~LkpgG~l~~~ 232 (357)
.++++.+...+.+.-+..
T Consensus 59 ~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 59 MLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred HHHHHHHHhccCCCcEEE
Confidence 455555544444543443
No 433
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=82.70 E-value=24 Score=28.61 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=47.2
Q ss_pred EEEEECCcccHHHHHHHHHC---CCcEEEEEcCC--HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----------cc
Q 018346 132 TVLDVGCGWGSLSLYIAQKY---SNCKITGICNS--KTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 195 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s--~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 195 (357)
++|=.|++ +.++..+++.+ .+..|+.+.-+ .+..+......+..+ .++.++.+|+.+... .+
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 56667766 44444444432 24578888887 555555555566556 489999999886320 15
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|++|.+...
T Consensus 80 ~ld~li~~ag~ 90 (167)
T PF00106_consen 80 PLDILINNAGI 90 (167)
T ss_dssp SESEEEEECSC
T ss_pred ccccccccccc
Confidence 79999987744
No 434
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=82.48 E-value=21 Score=33.03 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=59.9
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---c-ccCcc
Q 018346 124 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---M-EASYD 198 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~-~~~fD 198 (357)
...+.++.+||=.||| .|..+..+++.. +.++++++.+++.++.+++ .|.+. ++...-.+.. . ...+|
T Consensus 158 ~~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~--~i~~~~~~~~~~~~~~~~~d 230 (333)
T cd08296 158 NSGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARK----LGAHH--YIDTSKEDVAEALQELGGAK 230 (333)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----cCCcE--EecCCCccHHHHHHhcCCCC
Confidence 3456678899999865 455666677766 7789999998876665533 34321 1111111110 0 13478
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++.... ....+..+.+.|+++|.++....
T Consensus 231 ~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 231 LILATAP------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred EEEECCC------chHHHHHHHHHcccCCEEEEEec
Confidence 8885321 13467778889999999876543
No 435
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=82.48 E-value=3.9 Score=38.58 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=59.8
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------ccc
Q 018346 124 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEA 195 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~ 195 (357)
...+.++.+||-.|+|. |..+..+++.. +. .++++|.++...+.+++ .+.+ .++..+-.++. ...
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~~~ 253 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREITGG 253 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHhCC
Confidence 34566788999988753 66777777776 56 69999999887665543 3331 11111111100 024
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+-...- ...+..+.+.|+++|.++...
T Consensus 254 ~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 254 GVDYALDTTGV------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCcEEEECCCC------cHHHHHHHHHhccCCEEEEeC
Confidence 58988864221 235677888999999987643
No 436
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.45 E-value=18 Score=31.99 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=46.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
.++++|-.|.++ +.++..+++.+ .+++|+.++.+....+.+++. .+ .++.++.+|+.+... .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---VD-EEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---cc-CceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467899888874 56666665554 378999888764322222211 11 267888999876320 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+++|+++.+..+
T Consensus 82 g~iD~lv~nAg~ 93 (252)
T PRK06079 82 GKIDGIVHAIAY 93 (252)
T ss_pred CCCCEEEEcccc
Confidence 468999987654
No 437
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.43 E-value=18 Score=31.39 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~v-D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
+++||=.|+ +|.++..+++.+ .+.+++.+ +-+++..+.........+. ++.++..|+.+... . +
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGG-DAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 457777774 667777666543 36788888 8887766655555444332 68899999886421 0 2
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
.+|+|+.+...
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 68999987644
No 438
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=82.26 E-value=25 Score=33.06 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=55.4
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-cccCccEEEEccc
Q 018346 128 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~Ii~~~~ 205 (357)
.++.+||-.|+| .|..+..+++.. ++++++++.+++....+.+ ..|.+.+ +...+...+. ....+|+|+-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~---~~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALE---HLGADDY-LVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH---hcCCcEE-ecCCChHHHHHhcCCCcEEEECCC
Confidence 467888888765 466667777776 7788888887765443322 2444211 1111111110 0134788775422
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....+..+.+.|+++|+++..-
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEEC
Confidence 1245677788999999987753
No 439
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.25 E-value=16 Score=33.61 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=47.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc-c---cCccEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-E---ASYDRIY 201 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~-~---~~fD~Ii 201 (357)
.+++||-.| |+|.++..+++.+ .+.+|++++.++.............+. .+++++.+|+.+... . ...|+|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 467888887 6777777777654 367887776655433222222111122 368899999987431 1 4589988
Q ss_pred Ecccc
Q 018346 202 SIEMF 206 (357)
Q Consensus 202 ~~~~~ 206 (357)
.+...
T Consensus 83 h~A~~ 87 (325)
T PLN02989 83 HTASP 87 (325)
T ss_pred EeCCC
Confidence 77643
No 440
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=82.22 E-value=19 Score=34.28 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccC
Q 018346 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADIS 189 (357)
Q Consensus 112 ~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~ 189 (357)
.+.+.+++.+.+.. . . .+|+-++=..|.++..++...|. ...|. --.-...+.|+..++++ .+++. +..
T Consensus 30 aade~ll~~~~~~~-~-~-~~~~i~nd~fGal~~~l~~~~~~---~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~--~~~ 100 (378)
T PRK15001 30 AADEYLLQQLDDTE-I-R-GPVLILNDAFGALSCALAEHKPY---SIGDS-YISELATRENLRLNGIDESSVKFL--DST 100 (378)
T ss_pred cHHHHHHHHHhhcc-c-C-CCEEEEcCchhHHHHHHHhCCCC---eeehH-HHHHHHHHHHHHHcCCCcccceee--ccc
Confidence 33444555544321 1 1 27999999999999999965331 22342 22333456788888874 34444 333
Q ss_pred CCccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 190 TFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+ ++++.+|+|+...+=. .......+..+.++|.||+.+++..-
T Consensus 101 ~-~~~~~~d~vl~~~PK~-~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 101 A-DYPQQPGVVLIKVPKT-LALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred c-cccCCCCEEEEEeCCC-HHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 3 2236699998866532 23456678888999999999876433
No 441
>PRK05872 short chain dehydrogenase; Provisional
Probab=82.14 E-value=18 Score=32.95 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=47.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
.+++||-.|++ |.++..+++.+ .+++|+.++.+++.++...+.... + ..+..+.+|+.+... . +
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888754 45555554443 378999999988876655443321 1 255666688876310 0 4
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|++|.+...
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 68999988754
No 442
>PRK12744 short chain dehydrogenase; Provisional
Probab=82.14 E-value=22 Score=31.33 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=57.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCC----HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS----KTQKEFIEEQCRVLELQNVEIIVADISTFEM--------- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s----~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------- 193 (357)
.++++|=.|+ +|.++..+++.+ .+.+|+.++.+ .+..+...+.....+. ++.++..|+.+...
T Consensus 7 ~~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCHHHHHHHHHHHH
Confidence 3568888885 555666666554 36676666532 2333333333333333 68889999876321
Q ss_pred -c-cCccEEEEcccccc------h--hh-----------HHHHHHHHHHhcccCceEEEE
Q 018346 194 -E-ASYDRIYSIEMFEH------M--KN-----------YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 -~-~~fD~Ii~~~~~~~------~--~~-----------~~~~l~~~~~~LkpgG~l~~~ 232 (357)
. +..|+++.+..... . ++ .-.+++.+.+.++++|.+++.
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 0 36899998775411 1 11 123456666677777776543
No 443
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.00 E-value=6.8 Score=35.57 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=50.0
Q ss_pred EEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccch
Q 018346 132 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 209 (357)
Q Consensus 132 ~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~ 209 (357)
+|.=||+|. |.++..+.+. +.+|+++|.+++.++.+.+ .|. +.....+.. . ....|+|+..-+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~----~g~--~~~~~~~~~-~--~~~aDlVilavp~~~~ 70 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE----RGL--VDEASTDLS-L--LKDCDLVILALPIGLL 70 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----CCC--cccccCCHh-H--hcCCCEEEEcCCHHHH
Confidence 466678774 4455555544 6799999999987666543 232 111111111 1 1457999987665433
Q ss_pred hhHHHHHHHHHHhcccCceE
Q 018346 210 KNYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 210 ~~~~~~l~~~~~~LkpgG~l 229 (357)
.++++++...++|+..+
T Consensus 71 ---~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 71 ---LPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHhCCCCcEE
Confidence 45677787778776433
No 444
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.94 E-value=13 Score=33.88 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=63.1
Q ss_pred CEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-------cCC----------CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL----------QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-------~~~----------~~v~~~~~d~~~~ 191 (357)
.+|-=||+|+ +.++..++.. +..|+..|.+++.++.+.+++.. .|. .++++ ..|....
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh
Confidence 4788889984 3455555544 88999999999999887665432 111 12222 2333211
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhc-ccCceEEEEeccC
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFCH 236 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~ 236 (357)
...|+|+-. +.+..+-...++..+.+.+ +|+..+...+.+.
T Consensus 83 ---~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~ 124 (286)
T PRK07819 83 ---ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI 124 (286)
T ss_pred ---CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 457888865 4556666677888888888 7777665545443
No 445
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=81.93 E-value=8.4 Score=34.01 Aligned_cols=76 Identities=18% Similarity=0.106 Sum_probs=51.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
++++||-.|+ +|.++..+++.+ .+++|+.++.+++.++...+..+..+. ++.++.+|+.+... . +
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678888885 555566555443 378999999998777666555555443 68889999876321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|.|+.+...
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 57888877643
No 446
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=81.91 E-value=3.9 Score=37.05 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=37.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~ 175 (357)
+..+.+|.-||+|.-++..++++. .++|.+||+++..++.-+-++..
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHHHHHHHHHHHHH
Confidence 457889999999977777777765 57999999999998876665543
No 447
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.88 E-value=30 Score=31.18 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=59.8
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 194 (357)
.++.+|=.|+++ +.++..+++.+ .+++|+.++.+....+.+.+.....+. . .++.+|+.+... .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 367899999863 45555555443 278999888875422223332233332 3 567889887421 1
Q ss_pred cCccEEEEcccccc-------h-----hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYDRIYSIEMFEH-------M-----KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~-------~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+.+|++|.+..+.. + ++ +-.+.+.+.+.++.+|.++...
T Consensus 82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 56899998875421 1 11 1224455666777778766543
No 448
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.62 E-value=8.2 Score=34.09 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=52.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.+++||=.|+ +|.++..+++.+ .+.+|++++.++..++...+.....+. ++.++.+|+.+... . +
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678998884 666666666543 378999999998877666655555443 68888899876320 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|+|+.+...
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 58999987754
No 449
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.48 E-value=6.7 Score=35.76 Aligned_cols=58 Identities=19% Similarity=0.116 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
.++..++.. ...++..|||.-+|+|..+...... +-.++|+|+++..++.+.++....
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 345555554 4567899999999999999877765 779999999999999999988754
No 450
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=81.09 E-value=10 Score=36.06 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHH-HHHHHHHHHHcCCCCeEEEEeccCCCc-cccCccEEEEcc
Q 018346 128 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~-l~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~Ii~~~ 204 (357)
.++.+||=.|+| .|..+..+++.. +++|++++.+++. .+.+ +..|.+.+ +...+..... ..+.+|+|+-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a----~~lGa~~~-i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAI----DRLGADSF-LVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHH----HhCCCcEE-EcCcCHHHHHHhhCCCcEEEECC
Confidence 467889988886 466667777776 7889999887653 2222 33454211 1001100110 013478887642
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ....+..+.+.+++||.++..-
T Consensus 251 G------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 S------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred C------cHHHHHHHHHhhcCCCEEEEEc
Confidence 2 1235677788999999988653
No 451
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=81.02 E-value=7.4 Score=40.64 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=67.7
Q ss_pred CEEEEECCccc--HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C-C---------CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E-L---------QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G--~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~ 191 (357)
.+|-=||+|+= .++..++.. +..|+.+|.+++.++.+.+++... + + .++++. .|+..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh
Confidence 57889999863 344445544 889999999999998877665432 1 1 133332 232221
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...|+||=. +.+.++-..++++++.++++|+.++...+.+.
T Consensus 413 ---~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl 453 (737)
T TIGR02441 413 ---KNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNTSAL 453 (737)
T ss_pred ---ccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 457877754 67777778899999999999999887655544
No 452
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.83 E-value=28 Score=30.68 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=45.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----------cc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 195 (357)
.++++|-.|+++ .++..+++.+ .+++|+.++.+.. +...+.....+. ++.++..|+.+... .+
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNT-GLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGR-KFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCC-eEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 467899888654 5555555433 3789998876542 223333333333 68889999887420 04
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|+++.+...
T Consensus 83 ~iD~lv~~ag~ 93 (251)
T PRK12481 83 HIDILINNAGI 93 (251)
T ss_pred CCCEEEECCCc
Confidence 68999987643
No 453
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=80.76 E-value=9.7 Score=39.64 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=67.7
Q ss_pred CEEEEECCccc--HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C----------CCCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G--~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~----------~~~v~~~~~d~~~~ 191 (357)
.+|-=||+|+= .++..++.. +..|+.+|.+++.++.+++++... + +.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 47888999963 344445544 889999999999998877655321 1 1133332 122111
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...|+|+=. +.+.++-..+++.++-++++|+.+|.-.+.+.
T Consensus 391 ---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l 431 (714)
T TIGR02437 391 ---DNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTSTI 431 (714)
T ss_pred ---cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 457888754 67777778899999999999998877655544
No 454
>PRK08267 short chain dehydrogenase; Provisional
Probab=80.70 E-value=18 Score=32.03 Aligned_cols=72 Identities=7% Similarity=0.070 Sum_probs=46.6
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc------------ccC
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------------EAS 196 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------------~~~ 196 (357)
+++|-.|++ |.++..+++.+ .+.+|++++.+++.++....... + .++.++.+|+.+... .++
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 357777755 45555554433 37899999998886665544332 2 278899999986320 135
Q ss_pred ccEEEEcccc
Q 018346 197 YDRIYSIEMF 206 (357)
Q Consensus 197 fD~Ii~~~~~ 206 (357)
+|+|+.+...
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 7999987754
No 455
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=80.52 E-value=15 Score=32.10 Aligned_cols=97 Identities=14% Similarity=0.032 Sum_probs=57.7
Q ss_pred CCc-ccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----------cc-cCccEEE
Q 018346 137 GCG-WGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----------ME-ASYDRIY 201 (357)
Q Consensus 137 GcG-~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-----------~~-~~fD~Ii 201 (357)
|+| ++.++..+++.+ .+++|+.++.+++.++...+.+.... ...++.+|+.+.. .. +..|++|
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV 78 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY--GAEVIQCDLSDEESVEALFDEAVERFGGRIDILV 78 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT--TSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc--CCceEeecCcchHHHHHHHHHHHhhcCCCeEEEE
Confidence 455 344444444332 28999999999998655544444332 2346899987632 01 5679888
Q ss_pred Ecccccch------------hh-----------HHHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEHM------------KN-----------YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~~------------~~-----------~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+...... ++ ...+.+.+.+.++++|.+++....
T Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~ 135 (241)
T PF13561_consen 79 NNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSI 135 (241)
T ss_dssp EEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEG
T ss_pred ecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccch
Confidence 76532211 01 344566667788888887776544
No 456
>PRK07102 short chain dehydrogenase; Provisional
Probab=80.31 E-value=9.4 Score=33.42 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=47.6
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--------ccCccEE
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------EASYDRI 200 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD~I 200 (357)
++|+-.|+ +|.++..+++.+ .+.+|++++.+++..+...+.....+..++.++.+|+.+... ...+|++
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 46787774 466666555443 267999999988766555444433333378999999887421 1347999
Q ss_pred EEcc
Q 018346 201 YSIE 204 (357)
Q Consensus 201 i~~~ 204 (357)
+.+.
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8765
No 457
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.28 E-value=11 Score=39.25 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=67.6
Q ss_pred CEEEEECCccc--HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C----------CCCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G--~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~----------~~~v~~~~~d~~~~ 191 (357)
.+|.=||+|+= .++..++.. +..|+.+|.+++.++.+.+++... | +.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 57999999973 345555544 899999999999998876654321 1 1234432 233221
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...|+||=. +.+.++-..+++.++.++++|+.++.-.+.+.
T Consensus 391 ---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl 431 (715)
T PRK11730 391 ---ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTSTI 431 (715)
T ss_pred ---cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 457877754 56777778899999999999998876655544
No 458
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.25 E-value=10 Score=39.43 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=68.1
Q ss_pred CCEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C----------CCCeEEEEeccCC
Q 018346 130 GHTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADIST 190 (357)
Q Consensus 130 ~~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~----------~~~v~~~~~d~~~ 190 (357)
-.+|.=||+|+ ..++..++.. .+..|+..|.+++.++.+.+++... + ..++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 36799999997 3345545523 2789999999999998886655331 1 1234433 22221
Q ss_pred CccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 191 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+ ...|+|+=. +.+.++-..+++.++.+.++|+.++.-.+.+.
T Consensus 387 ~---~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l 428 (708)
T PRK11154 387 F---KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSSL 428 (708)
T ss_pred h---ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 1 457887754 56777778899999999999998877655543
No 459
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.16 E-value=14 Score=32.79 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=49.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc------c-cCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E-ASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------~-~~fD~ 199 (357)
.++++|=.|++ |.++..+++.+ .+++|++++.+++.++.+...+......++.++..|+.+... . ++.|+
T Consensus 6 ~~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 35788888864 44555544332 278999999988877666555544322368888899876321 1 56899
Q ss_pred EEEccc
Q 018346 200 IYSIEM 205 (357)
Q Consensus 200 Ii~~~~ 205 (357)
++.+..
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 988764
No 460
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.00 E-value=7.9 Score=33.61 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCH
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSK 163 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~ 163 (357)
..+.||-.||.+|+++..+++.+ .|+.|+++--+-
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~ 42 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRL 42 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcccc
Confidence 46789999999999999999876 478888875443
No 461
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=79.96 E-value=30 Score=32.85 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=58.3
Q ss_pred cCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-----ccC----CCcc
Q 018346 125 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA-----DIS----TFEM 193 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-----d~~----~~~~ 193 (357)
..+.++.+||=.|+| .|..++.+++.. ++ +|++++.+++..+.+++ .|.+.+ +... +.. ....
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~~----~g~~~~-v~~~~~~~~~~~~~v~~~~~ 272 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAKE----MGADYV-FNPTKMRDCLSGEKVMEVTK 272 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH----cCCCEE-EcccccccccHHHHHHHhcC
Confidence 356678888888775 344556667665 56 79999988875444443 344221 1111 110 1111
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...+|+|+.... .....+..+.+.|+++|+++...
T Consensus 273 g~gvDvvld~~g-----~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 273 GWGADIQVEAAG-----APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCCEEEECCC-----CcHHHHHHHHHHHHcCCEEEEEC
Confidence 145898886422 22345777888999999987643
No 462
>PRK06182 short chain dehydrogenase; Validated
Probab=79.92 E-value=17 Score=32.45 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=45.4
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------cC
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------AS 196 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~~ 196 (357)
+++||=.|+ +|.++..+++.+ .+.+|++++-+++.++... .. ++.++.+|+.+... . +.
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----SL---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----hC---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 467887775 455666666543 3789999998877543322 11 57788899876421 0 36
Q ss_pred ccEEEEcccc
Q 018346 197 YDRIYSIEMF 206 (357)
Q Consensus 197 fD~Ii~~~~~ 206 (357)
.|++|.+...
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 8999988754
No 463
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.89 E-value=14 Score=33.75 Aligned_cols=75 Identities=9% Similarity=0.199 Sum_probs=50.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
.+.+||=.|++ |.++..+++.+ .+.+|++++.+++.++...+.....+. ++.++.+|+.+... . +
T Consensus 39 ~~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35688888864 45555554432 278999999998877666555544443 67888999886321 0 3
Q ss_pred CccEEEEccc
Q 018346 196 SYDRIYSIEM 205 (357)
Q Consensus 196 ~fD~Ii~~~~ 205 (357)
..|+++.+..
T Consensus 117 ~id~li~~AG 126 (293)
T PRK05866 117 GVDILINNAG 126 (293)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 464
>PRK12743 oxidoreductase; Provisional
Probab=79.87 E-value=39 Score=29.78 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=47.4
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEc-CCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGIC-NSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD-~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
+++||=.|++ |.++..+++.+ .+.+|+.++ .+....+.+.+.....+. ++.++.+|+.+... . +
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3578888864 55666666543 367887764 455555554444444443 78899999887321 0 4
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|.|+.+...
T Consensus 80 ~id~li~~ag~ 90 (256)
T PRK12743 80 RIDVLVNNAGA 90 (256)
T ss_pred CCCEEEECCCC
Confidence 68999987643
No 465
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.79 E-value=8.5 Score=35.76 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEecc---CCCccccCccEE
Q 018346 127 LEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI---STFEMEASYDRI 200 (357)
Q Consensus 127 ~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~---~~~~~~~~fD~I 200 (357)
..++.+||-.|+|. |..+..+++.. +. +|++++-+++..+.+++ .|.+.+ .....+. ......+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEE
Confidence 35677888877753 66677777776 56 78888877765544443 333211 1111111 111112468999
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+.... ....+..+.+.|+++|.++...
T Consensus 236 ld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 236 LEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 86432 1345677788999999987643
No 466
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.77 E-value=7.8 Score=31.81 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=55.0
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-C------CCeEEEEeccCCCccccCccEEEEcc
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-L------QNVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-~------~~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
+|.=+|+|.++.+....-...+.+|+....+++.++..++.-.... + +++.+ ..|+.+.. ...|+|+..-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~--~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL--EDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH--TT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh--CcccEEEecc
Confidence 4667888877655543222226799999999988777666432111 1 13332 23332211 4579888766
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEE
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+-.. .+.+++++...|+++-.+++
T Consensus 78 Ps~~---~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 78 PSQA---HREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -GGG---HHHHHHHHTTTSHTT-EEEE
T ss_pred cHHH---HHHHHHHHhhccCCCCEEEE
Confidence 6543 46788999999977766655
No 467
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=79.76 E-value=11 Score=32.97 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=48.7
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-------c----ccCc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------M----EASY 197 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------~----~~~f 197 (357)
.+||=.| |+|.++..+++.+ .+.+|++++.++...+.........+. ++.++.+|+.+.. . ....
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG-SVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 3566666 5566666666553 367999999988766555554443333 7888999988642 0 0357
Q ss_pred cEEEEcccc
Q 018346 198 DRIYSIEMF 206 (357)
Q Consensus 198 D~Ii~~~~~ 206 (357)
|+|+.+...
T Consensus 80 d~vi~~a~~ 88 (255)
T TIGR01963 80 DILVNNAGI 88 (255)
T ss_pred CEEEECCCC
Confidence 999887643
No 468
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=79.55 E-value=11 Score=34.83 Aligned_cols=97 Identities=10% Similarity=0.063 Sum_probs=55.7
Q ss_pred CEEEEECCcc-c-HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-----CCeEEEEeccCCCccccCccEEEEc
Q 018346 131 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADISTFEMEASYDRIYSI 203 (357)
Q Consensus 131 ~~vLDiGcG~-G-~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~fD~Ii~~ 203 (357)
.+|+=+|+|. | .++..|++. +..|+.++-+++.++..+++ .|+ ................+.||+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCCcccccccCEEEEE
Confidence 5799999984 4 456666654 67899999887655544431 122 0000111001111111578988764
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
-=-+ +....++.+...+.|+..++....+
T Consensus 78 vK~~---~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 78 CKAY---DAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred CCHH---hHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 3222 3467788899999999876665443
No 469
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.50 E-value=8.4 Score=39.23 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=57.5
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEEc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSI 203 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~~ 203 (357)
.+|+=+|+ |.++..+++.. .+..++.+|.+++.++.+++ . ....+.+|..+... . ++.|.+++.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 35555555 45555555432 26799999999998877654 2 45678999887421 1 578888775
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..- -.. ...+-...+.+.|...++....++
T Consensus 472 ~~d--~~~-n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 472 CNE--PED-TMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred eCC--HHH-HHHHHHHHHHHCCCCeEEEEeCCH
Confidence 332 111 222333445577888887755443
No 470
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=79.48 E-value=2.2 Score=36.95 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 212 YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 212 ~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
....+.++.++|||||.+++.+....
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~ 60 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDRE 60 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCE
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchh
Confidence 57789999999999999999766544
No 471
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=79.40 E-value=7 Score=36.79 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=59.7
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe---ccC----CCcc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DIS----TFEM 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~---d~~----~~~~ 193 (357)
....+.++.+||-.|+| .|..+..+++.. +.. |++++.++...+.++ ..|.+ .++.. +.. ....
T Consensus 176 ~~~~~~~g~~vLI~g~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~~~ 248 (363)
T cd08279 176 NTARVRPGDTVAVIGCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDLTD 248 (363)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHHcC
Confidence 34456678899988875 466677777776 564 999998888655543 23331 11111 110 1111
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...+|+++....- ...+..+.+.|+++|+++...
T Consensus 249 ~~~vd~vld~~~~------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 249 GRGADYAFEAVGR------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCCEEEEcCCC------hHHHHHHHHHhhcCCeEEEEe
Confidence 2458988754321 245677888999999987653
No 472
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=79.35 E-value=2.5 Score=36.56 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHH
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 172 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~ 172 (357)
+++.+++.+...++...+|.--|.|..+..+.++.|..+++++|-+|-+-..|+-.
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~ 86 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFH 86 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHh
Confidence 55667777777889999999999999999999999899999999999876666543
No 473
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.27 E-value=12 Score=32.92 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=51.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----------cc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 195 (357)
.+++||-.| |+|.++..+++.+ .+.+|++++.+++.++.........+. ++.++.+|+.+... .+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 467888888 5566666666543 367999999998877666555444333 68889999876320 03
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|+|+.+...
T Consensus 86 ~~d~li~~ag~ 96 (258)
T PRK06949 86 TIDILVNNSGV 96 (258)
T ss_pred CCCEEEECCCC
Confidence 57999987753
No 474
>PRK07985 oxidoreductase; Provisional
Probab=79.18 E-value=36 Score=30.95 Aligned_cols=103 Identities=8% Similarity=0.065 Sum_probs=59.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCC--HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS--KTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s--~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 194 (357)
.++++|-.|++ |.++..+++.+ .+++|+.++.+ ....+...+.....+. ++.++.+|+.+... .
T Consensus 48 ~~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45789988864 45555554433 37888887654 2333434443444343 67888999886320 1
Q ss_pred -cCccEEEEcccccc----h-----hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 195 -ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|+++.+..... + ++ .-.+++.+.+.++.+|.+++..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 45799887754311 1 11 2235556666677788766643
No 475
>PRK06196 oxidoreductase; Provisional
Probab=79.04 E-value=22 Score=32.65 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=47.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
.+++||=.|++ |.++..+++.+ .+.+|++++.+++..+.+.+.. .++.++.+|+.+... . +
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l-----~~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGI-----DGVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----hhCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 45788888854 55666665543 3779999998877655443322 147788899886421 0 4
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 68999987743
No 476
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.91 E-value=19 Score=32.92 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=57.0
Q ss_pred CEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH-------HcCC----------CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------VLEL----------QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~-------~~~~----------~~v~~~~~d~~~~ 191 (357)
.+|-=||+|. ..++..++.. +.+|+++|.+++.++.+++.+. ..+. .++.+ ..+....
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEEL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHHh
Confidence 4688888874 2344444444 7899999999998876655432 1111 01221 1222111
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
...|+|+..- .+.......+++++...++|+..++..+.
T Consensus 82 ---~~aD~Vieav-~e~~~~k~~v~~~l~~~~~~~~il~s~tS 120 (295)
T PLN02545 82 ---RDADFIIEAI-VESEDLKKKLFSELDRICKPSAILASNTS 120 (295)
T ss_pred ---CCCCEEEEcC-ccCHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 4579888753 33333456778888888888876553333
No 477
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.77 E-value=11 Score=34.74 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=51.6
Q ss_pred CCEEEEECCccc--HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 130 GHTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 130 ~~~vLDiGcG~G--~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
..+|.=||+|.- .++..+.+.....+|+++|.+++.++.+++ .|. ... ...+..+. ....|+|+..-+..
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~-~~~-~~~~~~~~--~~~aDvViiavp~~ 77 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGL-GDR-VTTSAAEA--VKGADLVILCVPVG 77 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCC-Cce-ecCCHHHH--hcCCCEEEECCCHH
Confidence 357888988852 334444443212489999999987655532 333 111 11122111 14579998876654
Q ss_pred chhhHHHHHHHHHHhcccCceEE
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
. ...+++.+...++||+.++
T Consensus 78 ~---~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 A---SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred H---HHHHHHHHHhhCCCCCEEE
Confidence 3 3456677777788887554
No 478
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=78.71 E-value=16 Score=27.87 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=46.3
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---ccCccEEEEcccccc
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIEMFEH 208 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~Ii~~~~~~~ 208 (357)
+|| +.||+|..+..+++. .++.++..|+ .+++...+..+... ...+|+|++.+=+
T Consensus 3 kIL-lvCg~G~STSlla~k------------------~k~~~~e~gi-~~~i~a~~~~e~~~~~~~~~~DvIll~PQi-- 60 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK------------------TTEYLKEQGK-DIEVDAITATEGEKAIAAAEYDLYLVSPQT-- 60 (104)
T ss_pred EEE-EECCCchHHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhhccCCCCEEEEChHH--
Confidence 455 669999877766654 2455566777 57777777665432 1359999987533
Q ss_pred hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.-.++.+...+.+.|.-+..+
T Consensus 61 ----~~~~~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 61 ----KMYFKQFEEAGAKVGKPVVQI 81 (104)
T ss_pred ----HHHHHHHHHHhhhcCCCEEEe
Confidence 334555666666655544433
No 479
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=78.61 E-value=38 Score=32.77 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=54.4
Q ss_pred CEEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHH---------------HHHcCCCCeEEEEeccCCCcc
Q 018346 131 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQ---------------CRVLELQNVEIIVADISTFEM 193 (357)
Q Consensus 131 ~~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~---------------~~~~~~~~v~~~~~d~~~~~~ 193 (357)
.+|.=||.|.-+ ++..|++. +.+|+++|.+++.++..+.. ....| +..+. .+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g--~l~~~-~~~----- 73 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG--YLRAT-TTP----- 73 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC--ceeee-ccc-----
Confidence 467788888544 33344544 68999999999977653210 00011 11111 011
Q ss_pred ccCccEEEEccccc-------chhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 194 EASYDRIYSIEMFE-------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...|+|+..-+-. .+......++.+.+.|++|..++..+...
T Consensus 74 -~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 74 -EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred -ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 2468887655431 23345666788888898877766654433
No 480
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=78.60 E-value=28 Score=32.16 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=51.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCccccCccEEEEccc
Q 018346 128 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~fD~Ii~~~~ 205 (357)
.++.+|+-+|+|. |......+......+|+.+|.+++.... .+...+. ..... |..+. -...|+|++..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~---la~~~g~---~~~~~~~~~~~--l~~aDvVi~at~ 247 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE---LAKELGG---NAVPLDELLEL--LNEADVVISATG 247 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH---HHHHcCC---eEEeHHHHHHH--HhcCCEEEECCC
Confidence 3688999999863 3222222222223589999998764322 2222332 22221 22111 145899998776
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
-.+. ...+..+......+|.+++....++.
T Consensus 248 ~~~~---~~~~~~~~~~~~~~~~~viDlavPrd 277 (311)
T cd05213 248 APHY---AKIVERAMKKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred CCch---HHHHHHHHhhCCCCCeEEEEeCCCCC
Confidence 5443 33334333333335666665554443
No 481
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=78.18 E-value=51 Score=29.79 Aligned_cols=76 Identities=21% Similarity=0.146 Sum_probs=56.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC--CCeEEEEeccCCCcc----------
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM---------- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~~---------- 193 (357)
.++.+|--|.++|. ++..+++. +++|+.++.+++.++.........+. .++..+.+|+.+.+-
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~--Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKA--GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 56788888877763 55566665 89999999999988888777666554 268889999875320
Q ss_pred --ccCccEEEEcccc
Q 018346 194 --EASYDRIYSIEMF 206 (357)
Q Consensus 194 --~~~fD~Ii~~~~~ 206 (357)
.++.|+++.|...
T Consensus 85 ~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGA 99 (270)
T ss_pred HhCCCCCEEEEcCCc
Confidence 2578999988744
No 482
>PRK12746 short chain dehydrogenase; Provisional
Probab=78.15 E-value=41 Score=29.43 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-------
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------- 194 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~v-D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------- 194 (357)
+.+||=.|+ +|.++..+++.+ .+.+|+.+ ..+.+.++.........+. ++.++.+|+.+... .
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 6 GKVALVTGA-SRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGG-KAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 568887774 677777766543 36677664 4555444333333332232 68889999987321 0
Q ss_pred -----cCccEEEEcccc
Q 018346 195 -----ASYDRIYSIEMF 206 (357)
Q Consensus 195 -----~~fD~Ii~~~~~ 206 (357)
...|+|+.+...
T Consensus 84 ~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 84 IRVGTSEIDILVNNAGI 100 (254)
T ss_pred cccCCCCccEEEECCCC
Confidence 247999877643
No 483
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=78.12 E-value=16 Score=34.85 Aligned_cols=101 Identities=14% Similarity=0.232 Sum_probs=57.9
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC----------C----ccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----------F----EME 194 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----------~----~~~ 194 (357)
.+|-=+|-| .++..+|..+ .+.+|+|+||++..++...+ | .+....-+... + .+.
T Consensus 10 ~~I~ViGLG--YVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G--~~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIGLG--YVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G--ESYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred eEEEEEccc--cccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C--cceeecCcHHHHHHHHHhcCCceEecChh
Confidence 566667655 3333333222 37899999999987765433 1 11111111110 0 000
Q ss_pred --cCccEEE-Ecc-cccc-----hhhHHHHHHHHHHhcccCceEEEEeccCCCCC
Q 018346 195 --ASYDRIY-SIE-MFEH-----MKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240 (357)
Q Consensus 195 --~~fD~Ii-~~~-~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 240 (357)
...|+++ |.+ ++.. +....+..+.+.+.|++|-.+++++.+++...
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTT 135 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTT 135 (436)
T ss_pred hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcH
Confidence 2456544 433 3322 23457788899999999999999988877653
No 484
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.00 E-value=26 Score=31.10 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=60.6
Q ss_pred CCCEEEEECCc-ccHHHHHHHHHC--CCcEEEEEcCCH--HHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------
Q 018346 129 DGHTVLDVGCG-WGSLSLYIAQKY--SNCKITGICNSK--TQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 193 (357)
Q Consensus 129 ~~~~vLDiGcG-~G~~~~~la~~~--p~~~v~~vD~s~--~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------- 193 (357)
.++++|-.|+| ++.++..+++.+ .+++|+.++.+. +.++...+ ..+. ++.++..|+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPE-PAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCC-CCcEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999985 566766666543 378999888653 33332222 2222 56788889876420
Q ss_pred c-cCccEEEEcccccc-------h-----hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 194 E-ASYDRIYSIEMFEH-------M-----KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~~-------~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. +.+|+++.+..+.. + ++ +-.+.+.+.+.++++|.++...
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 1 56899998764421 1 11 1224455667777888766543
No 485
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=78.00 E-value=3.7 Score=39.80 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=54.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEE------EEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKIT------GICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~------~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
.+++|+=||||+=+.+..+--+-.+.+|+ ++|.+....+ ++...|. ...+..+.. ...|+|++
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~----kA~~dGF-----~v~~~~Ea~--~~ADvVvi 103 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWR----KATENGF-----KVGTYEELI--PQADLVIN 103 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHH----HHHhcCC-----ccCCHHHHH--HhCCEEEE
Confidence 57999999999744432221111244555 4444454433 3333344 112322221 56899999
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..+-. ....+.+++...||||..|.++.
T Consensus 104 LlPDt---~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 104 LTPDK---QHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred cCChH---HHHHHHHHHHhhCCCCCEEEecC
Confidence 87765 25566789999999999998854
No 486
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=77.94 E-value=3.9 Score=36.46 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~ 175 (357)
++..+.+.++..+..+++|.-||+|.++..+... +..|+.-|+++..+...+..++.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHHHHHhc
Confidence 3445666555435789999999999999988763 78999999999887777644443
No 487
>PRK06500 short chain dehydrogenase; Provisional
Probab=77.93 E-value=44 Score=29.05 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=44.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
++++||=.|++ |.++..+++.+ .+++|++++.+++.++...+. .+. ++.++.+|+.+... . +
T Consensus 5 ~~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAE---LGE-SALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hCC-ceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 35677777754 55555555433 267999999887655433322 232 67788888876321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
++|+|+.+...
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 68998877643
No 488
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.63 E-value=14 Score=32.23 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=50.7
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------cC
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------AS 196 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~~ 196 (357)
+.++|-.|+ +|.++..+++.+ .+.+|++++.++...+.........+. ++.++..|+.+... . +.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 467888884 677777776553 478999999988766555444443333 78889999876321 0 35
Q ss_pred ccEEEEcccc
Q 018346 197 YDRIYSIEMF 206 (357)
Q Consensus 197 fD~Ii~~~~~ 206 (357)
.|+|+.+...
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999987643
No 489
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.57 E-value=12 Score=32.50 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=48.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----cc------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----ME------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~------~ 195 (357)
.+.+||-.| |+|.++..+++.+ .+.+|++++.++.......+..... .++.++.+|+.+.. .. +
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356888888 4666666665543 3779999998887665554444332 36888999987632 00 3
Q ss_pred CccEEEEccc
Q 018346 196 SYDRIYSIEM 205 (357)
Q Consensus 196 ~fD~Ii~~~~ 205 (357)
.+|.|+.+..
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 6899887653
No 490
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=77.53 E-value=35 Score=32.67 Aligned_cols=101 Identities=8% Similarity=0.157 Sum_probs=51.3
Q ss_pred EEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH---cCC------CCeEEEE-eccCCCccccCccEE
Q 018346 132 TVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LEL------QNVEIIV-ADISTFEMEASYDRI 200 (357)
Q Consensus 132 ~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~---~~~------~~v~~~~-~d~~~~~~~~~fD~I 200 (357)
+|-=+|+|. |.....+... +.+|+++|++++.++.+++.... .++ .+..+.. .|..+. ....|+|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~--~~~ad~v 77 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA--YRDADYV 77 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh--hcCCCEE
Confidence 455567773 3222222223 67899999999988777652100 000 0122211 111111 1346887
Q ss_pred EEccccc--------chhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFE--------HMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+..-+-. .+......++.+.+ ++||..++..+..++
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~p 121 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPV 121 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCC
Confidence 7654322 12344566777777 677766665544443
No 491
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=77.29 E-value=21 Score=31.93 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=57.4
Q ss_pred HHHHHHHHc-----CCCCCCEEEEECCcccH----HHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe
Q 018346 117 MLELYCERS-----RLEDGHTVLDVGCGWGS----LSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 186 (357)
Q Consensus 117 ~l~~l~~~~-----~~~~~~~vLDiGcG~G~----~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~ 186 (357)
++.++++.+ ..+.+.+||-+|.|+-. -+..|.+-+| ++.++-.|+.+- +. +.-..+.+
T Consensus 44 KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~--------vS----Da~~~~~~ 111 (299)
T PF06460_consen 44 KYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY--------VS----DADQSIVG 111 (299)
T ss_dssp HHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B-----SSSEEEES
T ss_pred HHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh--------cc----ccCCceec
Confidence 444555543 34568999999998642 3344555565 567778887543 11 12345678
Q ss_pred ccCCCccccCccEEEEcccc---cc--------hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 187 DISTFEMEASYDRIYSIEMF---EH--------MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 187 d~~~~~~~~~fD~Ii~~~~~---~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|.....++.++|+|+|..-= .. .....-+..-+...|+=||.+++-+..+
T Consensus 112 Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~ 172 (299)
T PF06460_consen 112 DCRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH 172 (299)
T ss_dssp -GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred cccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence 88877667899999997530 00 0123445566778899999999976544
No 492
>PRK07904 short chain dehydrogenase; Provisional
Probab=77.14 E-value=13 Score=32.90 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=50.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHC---CCcEEEEEcCCHHH-HHHHHHHHHHcCCCCeEEEEeccCCCc-----cc----
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFE-----ME---- 194 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s~~~-l~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 194 (357)
..+.+||-.|++ |.++..+++.+ .+.+|+.++-+++. ++.+.+.....+..++.++.+|+.+.. ..
T Consensus 6 ~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 456789988874 55666665542 24799999887764 555555555444337899999987632 11
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|+++.+...
T Consensus 85 ~g~id~li~~ag~ 97 (253)
T PRK07904 85 GGDVDVAIVAFGL 97 (253)
T ss_pred cCCCCEEEEeeec
Confidence 368988865533
No 493
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.08 E-value=45 Score=30.40 Aligned_cols=76 Identities=22% Similarity=0.259 Sum_probs=57.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEEeccCCCcc----------c
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEM----------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~~~~----------~ 194 (357)
.++.||==||.+|. ++..+++. +++++.+--....++...+.+.+.+... +..+++|+.+... .
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~--G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKR--GAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhC--CCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 57889999998884 55556665 7888888888888888866666665544 9999999987421 1
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|+.|.|..+
T Consensus 89 fg~vDvLVNNAG~ 101 (282)
T KOG1205|consen 89 FGRVDVLVNNAGI 101 (282)
T ss_pred cCCCCEEEecCcc
Confidence 678999999855
No 494
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.91 E-value=16 Score=32.63 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=49.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c-cC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-AS 196 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-~~ 196 (357)
.++++|-.|++.| ++..+++.+ .+++|+.++.+++.++.+.+......-.++.++.+|+.+... . +.
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 4678888886654 344443332 278999999998877666655543211268889999887421 0 35
Q ss_pred ccEEEEccc
Q 018346 197 YDRIYSIEM 205 (357)
Q Consensus 197 fD~Ii~~~~ 205 (357)
.|+++.+..
T Consensus 86 iD~lv~nag 94 (263)
T PRK08339 86 PDIFFFSTG 94 (263)
T ss_pred CcEEEECCC
Confidence 898887764
No 495
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=76.60 E-value=4.1 Score=34.25 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=49.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.+.+|.=+|+|. |.-...+++.+ +.+|++.|.+...-. ..... .+ ...++.++. ...|+|+...++.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~----~~~~~---~~--~~~~l~ell--~~aDiv~~~~plt 102 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEE----GADEF---GV--EYVSLDELL--AQADIVSLHLPLT 102 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHH----HHHHT---TE--EESSHHHHH--HH-SEEEE-SSSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhh----hcccc---cc--eeeehhhhc--chhhhhhhhhccc
Confidence 578999998873 44444444455 789999999987533 12222 22 223443322 4579999877753
Q ss_pred chhhHHHHHHHHHHhcccCceEEE
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.- ...-+=++....+|||.+++=
T Consensus 103 ~~-T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 103 PE-TRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp TT-TTTSBSHHHHHTSTTTEEEEE
T ss_pred cc-cceeeeeeeeeccccceEEEe
Confidence 21 011122335567888775543
No 496
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=76.59 E-value=39 Score=29.98 Aligned_cols=105 Identities=14% Similarity=0.101 Sum_probs=59.3
Q ss_pred CCCEEEEECCc-ccHHHHHHHHHC--CCcEEEEEcCCHH--HHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c
Q 018346 129 DGHTVLDVGCG-WGSLSLYIAQKY--SNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADISTFEM---------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG-~G~~~~~la~~~--p~~~v~~vD~s~~--~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~ 194 (357)
.++++|=.|++ ++.++..+++.+ .+++|+.++.+.+ ..+...+.....+ .++.++..|+.+... .
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL-NPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc-CcceEeecCcCCHHHHHHHHHHHHH
Confidence 46789999985 577777776654 3678877654322 1111112222222 256678889876321 1
Q ss_pred --cCccEEEEcccccc-------h-----hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 195 --ASYDRIYSIEMFEH-------M-----KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 --~~fD~Ii~~~~~~~-------~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|+++.+..... + ++ .-.+.+.+.+.|+.+|.++....
T Consensus 84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS 148 (258)
T PRK07370 84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTY 148 (258)
T ss_pred HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 46899998775421 1 11 12234556667777787665443
No 497
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.59 E-value=15 Score=32.42 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
.++++|-.|+++| ++..+++.+ .+.+|++++.+++.++...+.....+. ++.++.+|+.+... . +
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGG-KVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678998887544 444444332 278999999998877766665555443 67888899876321 0 4
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|+++.+...
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 78999987644
No 498
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=76.57 E-value=8.1 Score=35.90 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=57.6
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEEeccC----CCccccC
Q 018346 124 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS----TFEMEAS 196 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~----~~~~~~~ 196 (357)
...+.++.+||=.|+| .|..+..+++.. + .+|++++.++...+.+++ .|.+. +.....+.. .......
T Consensus 161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 161 NGKVKPGDTVAIVGAGPVGLAALLTAQLY-SPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCC
Confidence 3445677888777764 344556667766 5 789999988876555543 34321 111111111 1111145
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+|+.... . ...+..+.+.|+++|.++..
T Consensus 236 ~d~vld~~g-----~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVIEAVG-----I-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEEECCC-----C-HHHHHHHHHhccCCcEEEEe
Confidence 898885431 1 23567788999999998764
No 499
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.46 E-value=21 Score=32.93 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=49.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEeccCCCcc-----------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEM-----------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d~~~~~~-----------~ 194 (357)
.+++++=.|+++ .++..+++.+ .+++|+.++-+.+..+.+.+.+.... -.++.++.+|+.+... .
T Consensus 13 ~gk~~lITGas~-GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASD-GLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 467888777754 4444444432 37899999988876666655544332 1268899999987421 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 458999987643
No 500
>PRK06194 hypothetical protein; Provisional
Probab=76.42 E-value=13 Score=33.46 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=49.6
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------cC
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------AS 196 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~~ 196 (357)
+.+||=.| |+|.++..+++.+ .+++|+.+|.+++.++...+.....+. ++.++.+|+.+... . +.
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56788666 4566666655443 378999999988766655554444343 68889999876321 0 25
Q ss_pred ccEEEEcccc
Q 018346 197 YDRIYSIEMF 206 (357)
Q Consensus 197 fD~Ii~~~~~ 206 (357)
.|+|+.+...
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 7999988754
Done!