BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018351
         (357 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DOR|A Chain A, Crystal Structure Of Mature Cpaf
 pdb|3DOR|B Chain B, Crystal Structure Of Mature Cpaf
 pdb|3DPM|A Chain A, Structure Of Mature Cpaf Complexed With Lactacystin
 pdb|3DPM|B Chain B, Structure Of Mature Cpaf Complexed With Lactacystin
          Length = 583

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 209 LNTPPRSEDEPRDSTYTRLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNAGSS 263
           L    RS    +D  + R  S   SPM      E   RNHY  SG    YN GS+
Sbjct: 206 LQKSMRSFFPKKDDAFHRSSSLFYSPMVPHFWAEL--RNHYATSGLKSGYNIGST 258


>pdb|3DPN|A Chain A, Crystal Structure Of Cpaf S499a Mutant
 pdb|3DPN|B Chain B, Crystal Structure Of Cpaf S499a Mutant
          Length = 583

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 209 LNTPPRSEDEPRDSTYTRLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNAGSS 263
           L    RS    +D  + R  S   SPM      E   RNHY  SG    YN GS+
Sbjct: 206 LQKSMRSFFPKKDDAFHRSSSLFYSPMVPHFWAEL--RNHYATSGLKSGYNIGST 258


>pdb|3DJA|A Chain A, Crystal Structure Of Cpaf Solved With Mad
 pdb|3DJA|B Chain B, Crystal Structure Of Cpaf Solved With Mad
          Length = 579

 Score = 28.9 bits (63), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 209 LNTPPRSEDEPRDSTYTRLGSARESPMSSSMNREWTPRNHYKPSGFDPHYNAGSS 263
           L    RS    +D  + R  S   SPM      E   RNHY  SG    YN GS+
Sbjct: 208 LQKSMRSFFPKKDDAFHRSSSLFYSPMVPHFWAEL--RNHYATSGLKSGYNIGST 260


>pdb|4E8L|A Chain A, Crystal Structure Of Streptogramin Group A Antibiotic
           Acetyltransferase Vata From Staphylococcus Aureus
 pdb|4E8L|B Chain B, Crystal Structure Of Streptogramin Group A Antibiotic
           Acetyltransferase Vata From Staphylococcus Aureus
 pdb|4E8L|C Chain C, Crystal Structure Of Streptogramin Group A Antibiotic
           Acetyltransferase Vata From Staphylococcus Aureus
          Length = 219

 Score = 28.1 bits (61), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 165 GGNDLKRIR--FSREMFNKWQAQRWWGENYDRIME 197
           GGN LK IR  FS  +  +W A +WW  +   I E
Sbjct: 162 GGNPLKFIRKRFSDGVIEEWLALQWWNLDMKIINE 196


>pdb|4HUR|A Chain A, Crystal Structure Of Streptogramin Group A Antibiotic
           Acetyltransferase Vata From Staphylococcus Aureus In
           Complex With Acetyl Coenzyme A
 pdb|4HUR|B Chain B, Crystal Structure Of Streptogramin Group A Antibiotic
           Acetyltransferase Vata From Staphylococcus Aureus In
           Complex With Acetyl Coenzyme A
 pdb|4HUR|C Chain C, Crystal Structure Of Streptogramin Group A Antibiotic
           Acetyltransferase Vata From Staphylococcus Aureus In
           Complex With Acetyl Coenzyme A
 pdb|4HUS|A Chain A, Crystal Structure Of Streptogramin Group A Antibiotic
           Acetyltransferase Vata From Staphylococcus Aureus In
           Complex With Virginiamycin M1
 pdb|4HUS|B Chain B, Crystal Structure Of Streptogramin Group A Antibiotic
           Acetyltransferase Vata From Staphylococcus Aureus In
           Complex With Virginiamycin M1
 pdb|4HUS|C Chain C, Crystal Structure Of Streptogramin Group A Antibiotic
           Acetyltransferase Vata From Staphylococcus Aureus In
           Complex With Virginiamycin M1
          Length = 220

 Score = 28.1 bits (61), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 165 GGNDLKRIR--FSREMFNKWQAQRWWGENYDRIME 197
           GGN LK IR  FS  +  +W A +WW  +   I E
Sbjct: 163 GGNPLKFIRKRFSDGVIEEWLALQWWNLDMKIINE 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,167,281
Number of Sequences: 62578
Number of extensions: 415670
Number of successful extensions: 555
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 7
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)