Query 018351
Match_columns 357
No_of_seqs 197 out of 230
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 08:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08381 BRX: Transcription fa 100.0 1E-32 2.2E-37 210.8 7.2 59 142-200 1-59 (59)
2 PF08381 BRX: Transcription fa 100.0 5.5E-32 1.2E-36 206.8 7.2 58 299-356 1-58 (59)
3 PF13713 BRX_N: Transcription 99.3 1.7E-12 3.7E-17 92.7 3.2 35 24-58 4-39 (39)
4 PF06092 DUF943: Enterobacteri 78.1 1.4 3E-05 40.3 1.9 28 179-206 51-78 (157)
5 PF06092 DUF943: Enterobacteri 63.5 4.2 9.2E-05 37.2 1.6 20 337-356 52-71 (157)
6 PF05424 Duffy_binding: Duffy 22.3 48 0.001 29.8 1.4 16 340-355 121-136 (182)
7 COG4681 Uncharacterized protei 20.4 45 0.00097 31.3 0.8 62 142-203 65-131 (181)
8 PF13119 DUF3973: Domain of un 18.8 36 0.00077 25.3 -0.2 9 1-9 1-9 (41)
9 PF06877 RraB: Regulator of ri 16.7 1.3E+02 0.0029 24.2 2.6 26 27-52 74-100 (104)
10 PF10423 AMNp_N: Bacterial AMP 14.3 1.7E+02 0.0036 27.0 2.9 35 151-203 63-97 (160)
No 1
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.97 E-value=1e-32 Score=210.85 Aligned_cols=59 Identities=68% Similarity=1.254 Sum_probs=57.3
Q ss_pred CCCCceeeeeCCeeEEEEEecCCCCccceEEeehHhhhchHHHHHHHHHhhhhHHhhhc
Q 018351 142 DEPKEWMAQVEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYN 200 (357)
Q Consensus 142 ~~e~EwVeQ~EPGVyITl~~lp~G~~~LKRVRFSR~~F~e~qAq~WW~eN~~rV~e~Yn 200 (357)
++++|||||+||||||||+++|||+|+||||||||++|+++||+.||+||++||+++||
T Consensus 1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Yn 59 (59)
T PF08381_consen 1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKYN 59 (59)
T ss_pred CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999999999999999999999999999999999999997
No 2
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.97 E-value=5.5e-32 Score=206.82 Aligned_cols=58 Identities=64% Similarity=1.189 Sum_probs=56.5
Q ss_pred ccccceEeeeCCceEEEEEEcCCCccceeEEEeehhccchhhHHHHHHHhHhHHHHhc
Q 018351 299 EVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRERFGEVNAKTWWEENRERIQAQY 356 (357)
Q Consensus 299 ~~e~EwVEQ~EPGVYITl~~~p~G~r~LKRVRFSR~~F~e~qA~~WW~eN~~RI~e~Y 356 (357)
++++|||||+||||||||+++|||+++||||||||++|+++||+.||+||++||+++|
T Consensus 1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Y 58 (59)
T PF08381_consen 1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKY 58 (59)
T ss_pred CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999999999999999999999999999
No 3
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=99.29 E-value=1.7e-12 Score=92.72 Aligned_cols=35 Identities=57% Similarity=0.992 Sum_probs=32.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhhhcc-CccccCCC
Q 018351 24 GSGTPSTKEAVKSLTAQIKDMAIKISG-YRQCKPCT 58 (357)
Q Consensus 24 ~~~tp~t~~aiKslt~QiKDmalK~Sg-yr~ckp~~ 58 (357)
++.++.++|+||+||+|||||++|++| |++|+||+
T Consensus 4 aak~kaaKe~IKsLt~QlK~maekl~~~~~~~k~~~ 39 (39)
T PF13713_consen 4 AAKCKAAKEVIKSLTAQLKDMAEKLPGAYRNCKPCS 39 (39)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCchhhhccCCCC
Confidence 456788999999999999999999999 99999995
No 4
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=78.12 E-value=1.4 Score=40.29 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=22.4
Q ss_pred hchHHHHHHHHHhhhhHHhhhccccccc
Q 018351 179 FNKWQAQRWWGENYDRIMELYNVQRFNR 206 (357)
Q Consensus 179 F~e~qAq~WW~eN~~rV~e~Ynv~~~~~ 206 (357)
|++..==.||.+|+++|.++|+++..+.
T Consensus 51 ~Td~gKI~WW~~Nk~~l~~KY~ip~~~~ 78 (157)
T PF06092_consen 51 LTDSGKINWWLKNKDMLKEKYNIPEPDS 78 (157)
T ss_pred CCccchhhHHHHhHHHHHHhcCCCCCCC
Confidence 4455566799999999999999887543
No 5
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=63.48 E-value=4.2 Score=37.18 Aligned_cols=20 Identities=20% Similarity=0.782 Sum_probs=16.6
Q ss_pred chhhHHHHHHHhHhHHHHhc
Q 018351 337 GEVNAKTWWEENRERIQAQY 356 (357)
Q Consensus 337 ~e~qA~~WW~eN~~RI~e~Y 356 (357)
++..==.||++|++.|.++|
T Consensus 52 Td~gKI~WW~~Nk~~l~~KY 71 (157)
T PF06092_consen 52 TDSGKINWWLKNKDMLKEKY 71 (157)
T ss_pred CccchhhHHHHhHHHHHHhc
Confidence 35555679999999999998
No 6
>PF05424 Duffy_binding: Duffy binding domain; InterPro: IPR008602 This family contains several Plasmodium Duffy binding proteins. Plasmodium vivax and Plasmodium knowlesi merozoites invade Homo sapiens erythrocytes that express Duffy blood group surface determinants. The Duffy receptor family is localised in micronemes, an organelle found in all organisms of the phylum Apicomplexa [].; GO: 0004872 receptor activity, 0009405 pathogenesis, 0016021 integral to membrane; PDB: 2WAU_B 3CML_A 3CPZ_A 3BQL_A 3BQK_A 3BQI_A 3RRC_B 2XU0_A 2YK0_A 2C6J_A ....
Probab=22.31 E-value=48 Score=29.76 Aligned_cols=16 Identities=44% Similarity=0.920 Sum_probs=12.5
Q ss_pred hHHHHHHHhHhHHHHh
Q 018351 340 NAKTWWEENRERIQAQ 355 (357)
Q Consensus 340 qA~~WW~eN~~RI~e~ 355 (357)
.-+.||++|+..|-+-
T Consensus 121 ~Re~WW~~nr~~IWka 136 (182)
T PF05424_consen 121 LREDWWEENRKHIWKA 136 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhhcc
Confidence 4588999999887553
No 7
>COG4681 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.44 E-value=45 Score=31.31 Aligned_cols=62 Identities=21% Similarity=0.428 Sum_probs=37.9
Q ss_pred CCCCceeeeeCCeeEEEEEe-cCCCCccceEEe----ehHhhhchHHHHHHHHHhhhhHHhhhcccc
Q 018351 142 DEPKEWMAQVEPGVHITFLS-LPNGGNDLKRIR----FSREMFNKWQAQRWWGENYDRIMELYNVQR 203 (357)
Q Consensus 142 ~~e~EwVeQ~EPGVyITl~~-lp~G~~~LKRVR----FSR~~F~e~qAq~WW~eN~~rV~e~Ynv~~ 203 (357)
+++.-|..-+--||-+-|-. +||-.++-|--+ |+-=-++...|+.||.++.++|...-|+..
T Consensus 65 DEPelW~rn~~~~i~lWIelG~Pde~Ri~kac~q~~~val~ay~~ra~rvWw~q~~~k~a~~~NlsV 131 (181)
T COG4681 65 DEPELWLRNDHLGIDLWIELGLPDERRIKKACTQAAQVALFAYNSRAARVWWQQVQSKVAQFANLSV 131 (181)
T ss_pred CCHHHHhhccCccEeeeeecCCccHHHHHHHHhhhhheeeeeecchHHHHHHHHHHHHHHhhccceE
Confidence 45556666666676666554 454433322211 111125567799999999999998888543
No 8
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=18.78 E-value=36 Score=25.31 Aligned_cols=9 Identities=44% Similarity=1.364 Sum_probs=6.7
Q ss_pred Ccccccccc
Q 018351 1 MFTCIACTK 9 (357)
Q Consensus 1 MltCIacsk 9 (357)
|+-||.||+
T Consensus 1 MyYCi~Cs~ 9 (41)
T PF13119_consen 1 MYYCINCSE 9 (41)
T ss_pred CEEEEEhHH
Confidence 677777776
No 9
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=16.73 E-value=1.3e+02 Score=24.18 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHHHHHHHhhhhcc-Cc
Q 018351 27 TPSTKEAVKSLTAQIKDMAIKISG-YR 52 (357)
Q Consensus 27 tp~t~~aiKslt~QiKDmalK~Sg-yr 52 (357)
.+.+.+.|..++.||-++|-++.| |-
T Consensus 74 ~~~~~~~I~~~~~~l~~lA~~~~g~YD 100 (104)
T PF06877_consen 74 MVLDYEDINAITQELEDLAKEFGGEYD 100 (104)
T ss_dssp E-S-HHHHHHHHHHHHHHHHHHT-EEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCcEec
Confidence 345689999999999999999999 63
No 10
>PF10423 AMNp_N: Bacterial AMP nucleoside phosphorylase N-terminus ; InterPro: IPR018953 This is the N-terminal domain of bacterial AMP nucleoside phosphorylase (AMNp). The N- and C-termini form distinct domains which intertwine with each other to form a stable monomer which associates with five other monomers to yield the active hexamer. The N terminus consists of a long helix and a four-stranded sheet with a novel topology. The C terminus binds the nucleoside whereas the N terminus acts as the enzymatic regulatory domain. AMNp (3.2.2.4 from EC) catalyses the hydrolysis of AMP to form adenine and ribose 5-phosphate. thereby regulating intracellular AMP levels []. ; PDB: 1T8R_B 1T8Y_E 1T8W_A 1T8S_F 2GUW_A.
Probab=14.34 E-value=1.7e+02 Score=27.00 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=24.7
Q ss_pred eCCeeEEEEEecCCCCccceEEeehHhhhchHHHHHHHHHhhhhHHhhhcccc
Q 018351 151 VEPGVHITFLSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQR 203 (357)
Q Consensus 151 ~EPGVyITl~~lp~G~~~LKRVRFSR~~F~e~qAq~WW~eN~~rV~e~Ynv~~ 203 (357)
.+||+|.|-++.|+ .|.. .+.|-...|++.|+|..
T Consensus 63 ~~pG~Y~tTvTRP~-------------LFr~-----YL~eQl~lL~~ny~v~v 97 (160)
T PF10423_consen 63 SEPGVYSTTVTRPD-------------LFRD-----YLREQLTLLLRNYGVPV 97 (160)
T ss_dssp SSSEEEEEE---TT-------------TTHH-----HHHHHHHHHHHCC--EE
T ss_pred CCCceeEEeCcCHH-------------HHHH-----HHHHHHHHHHHcCCCcE
Confidence 58999999999994 5544 88999999999999643
Done!