Query 018351
Match_columns 357
No_of_seqs 197 out of 230
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g3w_A YAEQ protein, hypotheti 28.0 21 0.00072 32.2 1.5 25 179-203 107-131 (182)
2 2g3w_A YAEQ protein, hypotheti 26.6 28 0.00095 31.5 2.0 59 286-354 63-125 (182)
3 3c0u_A Uncharacterized protein 23.9 26 0.0009 31.6 1.3 25 179-203 109-133 (183)
4 3c0u_A Uncharacterized protein 19.9 37 0.0013 30.7 1.4 58 287-354 66-127 (183)
5 2ot9_A Hypothetical protein; Y 14.3 37 0.0012 30.6 -0.0 23 179-203 107-129 (180)
6 2qnk_A 3-hydroxyanthranilate 3 12.3 60 0.0021 31.2 0.8 27 36-62 136-165 (286)
7 2y8d_A Erythrocyte membrane pr 11.5 80 0.0027 30.0 1.4 16 340-355 135-150 (306)
8 2wau_A VAR2CSA, erythrocyte me 10.9 86 0.0029 29.6 1.4 16 340-355 130-145 (302)
9 2xu0_A Erythrocyte membrane pr 10.7 1.1E+02 0.0037 31.2 2.1 23 30-52 22-45 (487)
10 3rrc_A Duffy receptor; duffy b 10.1 1.2E+02 0.0041 29.3 2.1 18 339-356 136-153 (317)
No 1
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=28.01 E-value=21 Score=32.24 Aligned_cols=25 Identities=12% Similarity=0.473 Sum_probs=20.4
Q ss_pred hchHHHHHHHHHhhhhHHhhhcccc
Q 018351 179 FNKWQAQRWWGENYDRIMELYNVQR 203 (357)
Q Consensus 179 F~e~qAq~WW~eN~~rV~e~Ynv~~ 203 (357)
|+..-|+.||.+|..++...-|+..
T Consensus 107 yg~~~~~vWw~~~~~kl~r~~nl~V 131 (182)
T 2g3w_A 107 YGGQATETWWKKHANAMGRYRNLRV 131 (182)
T ss_dssp CCTHHHHHHHHHHHHHHTTCSSEEE
T ss_pred cCCchHHHHHHHhHHHHhCcCCcEE
Confidence 6777789999999999988766543
No 2
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=26.62 E-value=28 Score=31.47 Aligned_cols=59 Identities=25% Similarity=0.547 Sum_probs=33.9
Q ss_pred CCCCCCcccccccccccceEeeeCCceEEEEEEcCCCccceeEEEeehh----ccchhhHHHHHHHhHhHHHH
Q 018351 286 SRDEPSVSVSNASEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRE----RFGEVNAKTWWEENRERIQA 354 (357)
Q Consensus 286 s~d~~~vs~snas~~e~EwVEQ~EPGVYITl~~~p~G~r~LKRVRFSR~----~F~e~qA~~WW~eN~~RI~e 354 (357)
..|++-+-..+-++.=.-|||=-+| |-.+.-|-.+=+++ .|+...|+.||.+|+.++..
T Consensus 63 ~~dEPdlW~k~l~g~i~lWIevG~P----------de~rl~KA~~ra~~V~vy~yg~~~~~vWw~~~~~kl~r 125 (182)
T 2g3w_A 63 NDDEPDLWRRDYTGDPDLWIDLGQP----------DESRVRKACNRSREAVVIGYGGQATETWWKKHANAMGR 125 (182)
T ss_dssp CSSCCSEEEECTTSCEEEEEEESCC----------CHHHHHHHHHHSSEEEEEECCTHHHHHHHHHHHHHHTT
T ss_pred CCCCchhhhcCCCCCEEEEEEcCCC----------CHHHHHHhhccCCeEEEEecCCchHHHHHHHhHHHHhC
Confidence 3455555666655555678874333 32322221111111 47777889999999998864
No 3
>3c0u_A Uncharacterized protein YAEQ; PSI-2, protein structure initiative, center for structural genomics, MCSG, structural genomics, function; 2.70A {Escherichia coli}
Probab=23.92 E-value=26 Score=31.62 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=20.4
Q ss_pred hchHHHHHHHHHhhhhHHhhhcccc
Q 018351 179 FNKWQAQRWWGENYDRIMELYNVQR 203 (357)
Q Consensus 179 F~e~qAq~WW~eN~~rV~e~Ynv~~ 203 (357)
|+..-|+.||..|..++...-|+..
T Consensus 109 yg~~~~~vWw~~~~~kl~r~~nl~V 133 (183)
T 3c0u_A 109 YNSRAAQIWWQQNQSKCVQFANLSV 133 (183)
T ss_dssp CCHHHHHHHHHTTHHHHTTCTTEEE
T ss_pred cCCccHHHHHHHhHHHHhCcCCcEE
Confidence 7777789999999999988766433
No 4
>3c0u_A Uncharacterized protein YAEQ; PSI-2, protein structure initiative, center for structural genomics, MCSG, structural genomics, function; 2.70A {Escherichia coli}
Probab=19.93 E-value=37 Score=30.70 Aligned_cols=58 Identities=24% Similarity=0.464 Sum_probs=33.4
Q ss_pred CCCCCcccccccccccceEeeeCCceEEEEEEcCCCccceeEEEeehh----ccchhhHHHHHHHhHhHHHH
Q 018351 287 RDEPSVSVSNASEVEAEWVEQDEPGVYITIRQLADGSRELRRVRFSRE----RFGEVNAKTWWEENRERIQA 354 (357)
Q Consensus 287 ~d~~~vs~snas~~e~EwVEQ~EPGVYITl~~~p~G~r~LKRVRFSR~----~F~e~qA~~WW~eN~~RI~e 354 (357)
.|++-+-..+-++.=.-|||=-+| |-.+.-|-.+=+++ .|+...|+.||..|+.++..
T Consensus 66 ~dEPdlW~k~l~g~i~lWIevG~P----------dekrl~KA~~ra~~V~vy~yg~~~~~vWw~~~~~kl~r 127 (183)
T 3c0u_A 66 DDEPEAWLRNDHLGIDLWIELGLP----------DERRIKKACTQAAEVALFTYNSRAAQIWWQQNQSKCVQ 127 (183)
T ss_dssp CCCCSEEEECTTSCEEEEEEESCC----------CHHHHHHHHHHEEEEEEEECCHHHHHHHHHTTHHHHTT
T ss_pred CCCchhhhcCCCCCEEEEEEcCCC----------CHHHHHHhhccCceEEEEecCCccHHHHHHHhHHHHhC
Confidence 355555566655555668874333 33322221111111 47777889999999998865
No 5
>2ot9_A Hypothetical protein; YAEQ protein, PSI-2, protein structure initiative, MCSG, structural genomics, midwest center for S genomics; HET: SRT; 1.97A {Pseudomonas syringae PV} SCOP: c.52.1.33
Probab=14.32 E-value=37 Score=30.64 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=18.3
Q ss_pred hchHHHHHHHHHhhhhHHhhhcccc
Q 018351 179 FNKWQAQRWWGENYDRIMELYNVQR 203 (357)
Q Consensus 179 F~e~qAq~WW~eN~~rV~e~Ynv~~ 203 (357)
|+ .|+.||..|..++...-|+..
T Consensus 107 yg--~~~vWw~~~~~kl~r~~nl~V 129 (180)
T 2ot9_A 107 YG--SLRVWEGKVIPAIKNLKNVNI 129 (180)
T ss_dssp CS--CCHHHHHHHGGGCTTCSSEEE
T ss_pred cC--CcHHHHHHhHHHhhccCCcEE
Confidence 66 569999999999988766433
No 6
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=12.35 E-value=60 Score=31.17 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhcc---CccccCCCCCCC
Q 018351 36 SLTAQIKDMAIKISG---YRQCKPCTGSSS 62 (357)
Q Consensus 36 slt~QiKDmalK~Sg---yr~ckp~~gs~~ 62 (357)
.|-.|||.+...|-+ +|.|+||.++..
T Consensus 136 dl~~ql~~~~~~f~~~~~~rtc~p~~~~~~ 165 (286)
T 2qnk_A 136 DLGTQLAPIIQEFFSSEQYRTGKPIPDQLL 165 (286)
T ss_dssp SHHHHHHHHHHHHHTSHHHHHSCCCGGGSC
T ss_pred chHHhhHHHHHHHhcCcccccCCCChhhcc
Confidence 388999999999988 999999998863
No 7
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A {Plasmodium falciparum}
Probab=11.48 E-value=80 Score=29.95 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=12.7
Q ss_pred hHHHHHHHhHhHHHHh
Q 018351 340 NAKTWWEENRERIQAQ 355 (357)
Q Consensus 340 qA~~WW~eN~~RI~e~ 355 (357)
.-+.||++||..|=+-
T Consensus 135 ~Re~WW~~Nr~~VWka 150 (306)
T 2y8d_A 135 KRKKWWDMNKYHIWES 150 (306)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHH
Confidence 4478999999988654
No 8
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin sulphate A, membrane protein DBL, malaria; 3.00A {Plasmodium falciparum}
Probab=10.93 E-value=86 Score=29.64 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=12.7
Q ss_pred hHHHHHHHhHhHHHHh
Q 018351 340 NAKTWWEENRERIQAQ 355 (357)
Q Consensus 340 qA~~WW~eN~~RI~e~ 355 (357)
.-+.||++||..|=+-
T Consensus 130 ~Re~WW~~nr~~IWka 145 (302)
T 2wau_A 130 KRKKWWDMNKYHIWES 145 (302)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHhhhhh
Confidence 4578999999988654
No 9
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence, duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo alto}
Probab=10.73 E-value=1.1e+02 Score=31.18 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHhhhhcc-Cc
Q 018351 30 TKEAVKSLTAQIKDMAIKISG-YR 52 (357)
Q Consensus 30 t~~aiKslt~QiKDmalK~Sg-yr 52 (357)
-|.-+..+-.+|++-|-+-.. |+
T Consensus 22 a~~~ld~ig~~i~~~~~~~~~~~~ 45 (487)
T 2xu0_A 22 ARNVLENIGIKIYNQEIKKKNPYE 45 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 477777888888887765444 64
No 10
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy antigen RECE chemokines, cell invasion; HET: EDO; 1.95A {Plasmodium vivax} SCOP: a.264.1.1 PDB: 2c6j_A
Probab=10.06 E-value=1.2e+02 Score=29.28 Aligned_cols=18 Identities=28% Similarity=0.758 Sum_probs=14.0
Q ss_pred hhHHHHHHHhHhHHHHhc
Q 018351 339 VNAKTWWEENRERIQAQY 356 (357)
Q Consensus 339 ~qA~~WW~eN~~RI~e~Y 356 (357)
..-+.||+.||..|-+-.
T Consensus 136 ~lRedWW~~Nr~~VWkam 153 (317)
T 3rrc_A 136 QRRKQWWNESKAQIWTAM 153 (317)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHHHHHhhh
Confidence 356789999999886643
Done!