Query 018352
Match_columns 357
No_of_seqs 367 out of 3002
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03291 Pox_MCEL: mRNA cappin 100.0 3.3E-59 7E-64 451.4 20.8 270 7-288 29-331 (331)
2 KOG1975 mRNA cap methyltransfe 100.0 1.9E-58 4.2E-63 429.8 20.4 276 7-298 90-379 (389)
3 COG2226 UbiE Methylase involve 99.9 2.3E-21 4.9E-26 179.0 14.6 176 18-240 38-225 (238)
4 PF01209 Ubie_methyltran: ubiE 99.9 1.6E-21 3.4E-26 180.7 11.5 165 29-240 45-221 (233)
5 KOG1540 Ubiquinone biosynthesi 99.8 1.2E-17 2.6E-22 152.7 14.6 175 21-240 89-283 (296)
6 PF12847 Methyltransf_18: Meth 99.8 8.4E-18 1.8E-22 137.0 12.2 109 31-147 1-112 (112)
7 PLN02396 hexaprenyldihydroxybe 99.8 1.5E-17 3.3E-22 160.7 15.8 161 31-241 131-291 (322)
8 PLN02233 ubiquinone biosynthes 99.7 8.7E-17 1.9E-21 151.5 16.5 109 30-148 72-184 (261)
9 PF08241 Methyltransf_11: Meth 99.7 2.7E-17 5.9E-22 128.9 10.3 95 36-144 1-95 (95)
10 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.1E-17 2.3E-22 152.7 7.0 171 19-241 47-217 (243)
11 COG2230 Cfa Cyclopropane fatty 99.7 1E-16 2.2E-21 150.8 13.5 212 20-288 59-272 (283)
12 PRK11036 putative S-adenosyl-L 99.7 2.4E-16 5.3E-21 147.7 15.3 178 24-246 37-217 (255)
13 PTZ00098 phosphoethanolamine N 99.7 1E-15 2.2E-20 144.4 19.5 161 29-247 50-210 (263)
14 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.2E-15 2.6E-20 142.6 14.7 112 24-145 49-163 (247)
15 PF13847 Methyltransf_31: Meth 99.7 8.8E-16 1.9E-20 132.6 12.8 117 31-157 3-122 (152)
16 KOG1271 Methyltransferases [Ge 99.7 7.9E-16 1.7E-20 134.3 11.5 171 11-188 46-224 (227)
17 PLN02244 tocopherol O-methyltr 99.7 2.4E-15 5.2E-20 147.0 16.0 109 30-148 117-225 (340)
18 PF13649 Methyltransf_25: Meth 99.6 7.5E-16 1.6E-20 124.0 9.8 96 35-140 1-101 (101)
19 PF02353 CMAS: Mycolic acid cy 99.6 5.5E-15 1.2E-19 140.0 17.3 174 29-255 60-233 (273)
20 TIGR00740 methyltransferase, p 99.6 4.6E-15 1E-19 137.7 16.1 113 24-146 46-161 (239)
21 TIGR02752 MenG_heptapren 2-hep 99.6 1.6E-15 3.6E-20 139.6 12.8 107 30-147 44-152 (231)
22 PRK11705 cyclopropane fatty ac 99.6 7.1E-15 1.5E-19 145.7 18.1 196 29-287 165-360 (383)
23 PF13489 Methyltransf_23: Meth 99.6 2.2E-15 4.8E-20 129.8 12.4 100 29-150 20-119 (161)
24 smart00828 PKS_MT Methyltransf 99.6 4.6E-15 1E-19 135.9 15.2 149 34-246 2-151 (224)
25 PRK11207 tellurite resistance 99.6 5.1E-15 1.1E-19 133.8 13.3 104 31-145 30-133 (197)
26 PRK15068 tRNA mo(5)U34 methylt 99.6 2E-14 4.4E-19 139.3 17.1 105 31-146 122-226 (322)
27 PRK05785 hypothetical protein; 99.6 3.8E-15 8.1E-20 137.6 11.4 102 29-149 49-151 (226)
28 TIGR00477 tehB tellurite resis 99.6 2.7E-14 5.8E-19 128.9 13.9 103 31-145 30-132 (195)
29 PLN02336 phosphoethanolamine N 99.6 9.2E-14 2E-18 141.5 19.3 159 30-248 265-423 (475)
30 PRK10258 biotin biosynthesis p 99.6 2.3E-14 5E-19 133.8 13.5 104 31-151 42-145 (251)
31 PF07021 MetW: Methionine bios 99.6 6.9E-14 1.5E-18 124.4 15.6 165 23-241 5-169 (193)
32 PRK14103 trans-aconitate 2-met 99.6 2.2E-14 4.7E-19 134.5 12.8 107 23-148 20-128 (255)
33 PF08242 Methyltransf_12: Meth 99.6 7E-16 1.5E-20 123.4 1.1 98 36-142 1-99 (99)
34 TIGR02021 BchM-ChlM magnesium 99.6 3.2E-13 7E-18 123.6 18.8 102 31-144 55-156 (219)
35 PRK01683 trans-aconitate 2-met 99.6 2.9E-14 6.4E-19 133.5 12.1 103 30-149 30-133 (258)
36 KOG1270 Methyltransferases [Co 99.5 2E-14 4.3E-19 132.4 9.6 170 18-240 68-250 (282)
37 PRK00107 gidB 16S rRNA methylt 99.5 2E-13 4.4E-18 122.4 15.2 115 18-148 32-147 (187)
38 PRK12335 tellurite resistance 99.5 7.6E-14 1.6E-18 133.3 13.2 104 31-146 120-223 (287)
39 TIGR03438 probable methyltrans 99.5 8.7E-13 1.9E-17 126.8 20.6 113 29-145 61-176 (301)
40 smart00138 MeTrc Methyltransfe 99.5 9.5E-14 2.1E-18 131.1 13.6 125 13-145 80-241 (264)
41 PLN02490 MPBQ/MSBQ methyltrans 99.5 9.6E-14 2.1E-18 135.0 13.9 104 30-147 112-216 (340)
42 TIGR03587 Pse_Me-ase pseudamin 99.5 1.4E-13 3.1E-18 125.1 14.2 122 5-145 19-141 (204)
43 PF03848 TehB: Tellurite resis 99.5 1E-13 2.3E-18 124.3 11.4 103 31-145 30-132 (192)
44 PRK00121 trmB tRNA (guanine-N( 99.5 1.2E-13 2.5E-18 125.4 11.9 123 27-154 36-164 (202)
45 TIGR00452 methyltransferase, p 99.5 1.8E-13 4E-18 131.9 13.2 106 31-147 121-226 (314)
46 TIGR02072 BioC biotin biosynth 99.5 2.3E-13 5.1E-18 124.7 13.3 107 31-152 34-141 (240)
47 KOG4300 Predicted methyltransf 99.5 1.6E-13 3.5E-18 122.2 11.2 102 33-145 78-181 (252)
48 PRK06202 hypothetical protein; 99.5 6.2E-13 1.3E-17 122.9 15.4 104 31-148 60-168 (232)
49 PRK11088 rrmA 23S rRNA methylt 99.5 4.3E-13 9.3E-18 127.0 13.8 101 31-154 85-189 (272)
50 TIGR02469 CbiT precorrin-6Y C5 99.5 1.7E-12 3.6E-17 107.0 15.2 105 29-146 17-122 (124)
51 TIGR03840 TMPT_Se_Te thiopurin 99.5 9E-13 1.9E-17 120.7 14.0 108 30-145 33-151 (213)
52 PRK06922 hypothetical protein; 99.5 4.2E-13 9.1E-18 138.6 13.0 108 31-146 418-537 (677)
53 PRK11873 arsM arsenite S-adeno 99.5 4.5E-13 9.7E-18 126.6 12.0 105 30-145 76-182 (272)
54 PLN02585 magnesium protoporphy 99.5 7.2E-12 1.6E-16 121.0 20.3 105 31-148 144-252 (315)
55 PRK07580 Mg-protoporphyrin IX 99.5 7.2E-12 1.6E-16 114.9 19.4 99 30-140 62-160 (230)
56 PLN03075 nicotianamine synthas 99.5 1.2E-12 2.5E-17 124.6 14.2 108 31-147 123-234 (296)
57 PRK08317 hypothetical protein; 99.4 1.5E-12 3.4E-17 119.1 14.2 109 29-149 17-127 (241)
58 PF05175 MTS: Methyltransferas 99.4 2.4E-12 5.3E-17 113.6 14.9 111 31-149 31-143 (170)
59 PRK00216 ubiE ubiquinone/menaq 99.4 1.3E-12 2.8E-17 120.0 13.6 105 31-145 51-157 (239)
60 PRK05134 bifunctional 3-demeth 99.4 3.2E-12 6.9E-17 117.9 16.2 107 31-149 48-154 (233)
61 TIGR00138 gidB 16S rRNA methyl 99.4 2.6E-12 5.5E-17 114.8 15.0 101 31-147 42-143 (181)
62 TIGR01983 UbiG ubiquinone bios 99.4 3.6E-12 7.8E-17 116.6 16.1 122 18-150 31-153 (224)
63 PF05401 NodS: Nodulation prot 99.4 8.2E-13 1.8E-17 117.8 11.0 105 31-147 43-147 (201)
64 PF13659 Methyltransf_26: Meth 99.4 4.2E-13 9.1E-18 110.1 8.4 113 32-148 1-117 (117)
65 TIGR02081 metW methionine bios 99.4 5E-12 1.1E-16 113.7 15.8 159 26-240 8-168 (194)
66 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.8E-12 6.1E-17 116.5 13.6 103 31-146 39-143 (223)
67 TIGR00537 hemK_rel_arch HemK-r 99.4 4.2E-12 9.1E-17 112.7 14.3 115 31-156 19-153 (179)
68 TIGR00406 prmA ribosomal prote 99.4 2.9E-12 6.3E-17 122.5 14.1 109 25-148 153-261 (288)
69 PRK15001 SAM-dependent 23S rib 99.4 7E-12 1.5E-16 123.7 16.4 108 32-146 229-340 (378)
70 PRK13255 thiopurine S-methyltr 99.4 4E-12 8.6E-17 116.8 13.6 108 30-145 36-154 (218)
71 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.9E-12 4.2E-17 116.6 10.7 117 30-151 15-137 (194)
72 PRK09489 rsmC 16S ribosomal RN 99.4 1.2E-11 2.6E-16 120.9 14.8 107 32-148 197-305 (342)
73 TIGR02716 C20_methyl_CrtF C-20 99.4 1.5E-11 3.1E-16 118.5 15.1 105 30-145 148-253 (306)
74 PRK14967 putative methyltransf 99.4 2.2E-11 4.8E-16 112.0 15.6 112 29-149 34-162 (223)
75 PRK08287 cobalt-precorrin-6Y C 99.3 3.2E-11 6.9E-16 107.8 15.8 102 30-147 30-132 (187)
76 PRK13944 protein-L-isoaspartat 99.3 2.1E-11 4.5E-16 110.9 14.8 101 30-146 71-173 (205)
77 PLN02336 phosphoethanolamine N 99.3 7.1E-12 1.5E-16 127.6 12.7 105 31-145 37-141 (475)
78 PRK00517 prmA ribosomal protei 99.3 1.6E-11 3.5E-16 114.9 13.3 102 27-149 115-216 (250)
79 PRK00377 cbiT cobalt-precorrin 99.3 5.5E-11 1.2E-15 107.4 15.4 120 21-152 29-151 (198)
80 PRK04266 fibrillarin; Provisio 99.3 2.5E-11 5.4E-16 112.1 13.3 107 30-148 71-178 (226)
81 PLN02232 ubiquinone biosynthes 99.3 2.4E-12 5.2E-17 112.6 6.0 79 58-146 1-81 (160)
82 PRK11188 rrmJ 23S rRNA methylt 99.3 7E-11 1.5E-15 107.8 14.3 111 29-152 49-171 (209)
83 PRK14968 putative methyltransf 99.3 9E-11 1.9E-15 104.0 14.4 112 30-149 22-151 (188)
84 TIGR03533 L3_gln_methyl protei 99.3 1.2E-10 2.6E-15 111.2 16.2 113 31-150 121-255 (284)
85 COG4106 Tam Trans-aconitate me 99.3 7.1E-12 1.5E-16 112.6 7.2 102 31-149 30-132 (257)
86 PRK13942 protein-L-isoaspartat 99.3 7.4E-11 1.6E-15 107.9 14.0 101 29-146 74-176 (212)
87 KOG3010 Methyltransferase [Gen 99.3 8.6E-12 1.9E-16 113.8 7.4 114 18-145 22-136 (261)
88 TIGR00438 rrmJ cell division p 99.3 5.5E-11 1.2E-15 106.4 12.5 117 29-157 30-160 (188)
89 PRK13256 thiopurine S-methyltr 99.3 7.1E-11 1.5E-15 108.7 13.1 113 30-148 42-165 (226)
90 TIGR00080 pimt protein-L-isoas 99.3 1E-10 2.2E-15 107.0 14.1 102 29-147 75-178 (215)
91 TIGR01177 conserved hypothetic 99.3 1.3E-10 2.8E-15 113.2 15.1 120 29-156 180-304 (329)
92 TIGR03534 RF_mod_PrmC protein- 99.2 1.5E-10 3.3E-15 107.5 14.7 111 30-148 86-219 (251)
93 PF06325 PrmA: Ribosomal prote 99.2 4E-11 8.6E-16 114.6 11.0 106 23-145 153-258 (295)
94 COG2264 PrmA Ribosomal protein 99.2 5.5E-11 1.2E-15 113.1 11.6 109 24-146 155-263 (300)
95 PRK14121 tRNA (guanine-N(7)-)- 99.2 9.4E-11 2E-15 115.5 13.5 116 31-152 122-241 (390)
96 cd02440 AdoMet_MTases S-adenos 99.2 1E-10 2.3E-15 91.1 11.1 103 34-145 1-103 (107)
97 COG4123 Predicted O-methyltran 99.2 8.8E-11 1.9E-15 108.9 11.2 134 20-157 31-183 (248)
98 KOG2361 Predicted methyltransf 99.2 7.7E-11 1.7E-15 107.6 10.5 160 34-238 74-236 (264)
99 PF08003 Methyltransf_9: Prote 99.2 3.6E-10 7.7E-15 107.1 15.2 103 31-146 115-219 (315)
100 PRK07402 precorrin-6B methylas 99.2 2.4E-10 5.2E-15 103.0 13.1 110 30-153 39-149 (196)
101 PRK11805 N5-glutamine S-adenos 99.2 4.1E-10 8.8E-15 108.7 15.4 110 33-149 135-266 (307)
102 TIGR00536 hemK_fam HemK family 99.2 5.1E-10 1.1E-14 106.8 15.5 110 33-149 116-247 (284)
103 PRK00312 pcm protein-L-isoaspa 99.2 3.4E-10 7.3E-15 103.2 13.3 100 30-147 77-176 (212)
104 PF01739 CheR: CheR methyltran 99.1 8.4E-10 1.8E-14 99.7 13.4 130 8-145 7-174 (196)
105 PRK09328 N5-glutamine S-adenos 99.1 1.1E-09 2.3E-14 103.4 14.6 110 30-147 107-239 (275)
106 COG2813 RsmC 16S RNA G1207 met 99.1 1.2E-09 2.6E-14 103.6 14.4 108 32-148 159-268 (300)
107 KOG1541 Predicted protein carb 99.1 8.1E-10 1.8E-14 99.7 12.3 112 32-156 51-171 (270)
108 TIGR03704 PrmC_rel_meth putati 99.1 1.8E-09 3.9E-14 101.3 15.3 110 32-149 87-219 (251)
109 PRK15128 23S rRNA m(5)C1962 me 99.1 1.4E-09 3E-14 108.4 15.0 115 31-149 220-342 (396)
110 PTZ00146 fibrillarin; Provisio 99.1 1.4E-09 3E-14 103.4 14.2 105 29-145 130-236 (293)
111 PRK04457 spermidine synthase; 99.1 1.2E-09 2.6E-14 103.1 13.7 115 30-150 65-181 (262)
112 PRK10901 16S rRNA methyltransf 99.1 1.6E-09 3.4E-14 109.2 15.1 112 30-148 243-374 (427)
113 PRK14904 16S rRNA methyltransf 99.1 2.3E-09 5.1E-14 108.5 15.6 110 31-149 250-380 (445)
114 PRK00811 spermidine synthase; 99.1 7.2E-10 1.6E-14 105.7 11.3 113 30-147 75-192 (283)
115 TIGR00446 nop2p NOL1/NOP2/sun 99.1 1.3E-09 2.9E-14 102.9 12.8 112 30-149 70-202 (264)
116 PRK14903 16S rRNA methyltransf 99.1 1.6E-09 3.5E-14 109.1 14.1 114 30-149 236-369 (431)
117 TIGR00563 rsmB ribosomal RNA s 99.1 1.6E-09 3.5E-14 109.1 13.9 115 31-149 238-371 (426)
118 PF05724 TPMT: Thiopurine S-me 99.1 5.6E-10 1.2E-14 102.6 9.5 109 29-145 35-154 (218)
119 COG4976 Predicted methyltransf 99.1 1.5E-10 3.2E-15 104.9 5.5 141 32-240 126-266 (287)
120 PRK14966 unknown domain/N5-glu 99.1 3.3E-09 7.1E-14 105.4 15.5 112 30-148 250-383 (423)
121 PRK14901 16S rRNA methyltransf 99.1 2.7E-09 6E-14 107.7 15.0 125 22-149 241-387 (434)
122 PRK01544 bifunctional N5-gluta 99.0 2.2E-09 4.8E-14 110.2 13.6 109 32-147 139-270 (506)
123 COG2242 CobL Precorrin-6B meth 99.0 9.5E-09 2.1E-13 91.1 15.2 122 20-156 22-145 (187)
124 PRK11783 rlmL 23S rRNA m(2)G24 99.0 3.4E-09 7.4E-14 112.9 14.2 119 24-148 532-658 (702)
125 smart00650 rADc Ribosomal RNA 99.0 3.1E-09 6.8E-14 93.5 11.7 108 30-152 12-119 (169)
126 PF06080 DUF938: Protein of un 99.0 9.1E-09 2E-13 92.9 14.7 121 25-147 18-142 (204)
127 PLN02781 Probable caffeoyl-CoA 99.0 3.6E-09 7.8E-14 98.3 12.6 106 31-145 68-177 (234)
128 PRK14902 16S rRNA methyltransf 99.0 5.7E-09 1.2E-13 105.7 15.1 112 30-148 249-381 (444)
129 PRK13943 protein-L-isoaspartat 99.0 4.7E-09 1E-13 101.7 13.6 101 29-146 78-180 (322)
130 PHA03411 putative methyltransf 99.0 2.5E-09 5.4E-14 100.7 11.2 101 31-145 64-182 (279)
131 COG2890 HemK Methylase of poly 98.9 1.8E-08 3.8E-13 96.1 13.4 114 34-156 113-250 (280)
132 PRK01581 speE spermidine synth 98.9 2.5E-08 5.5E-13 97.4 14.5 112 30-146 149-268 (374)
133 PF02390 Methyltransf_4: Putat 98.9 1.6E-08 3.6E-13 91.3 11.7 117 31-152 17-139 (195)
134 TIGR00417 speE spermidine synt 98.9 2.7E-08 5.9E-13 94.3 13.6 111 31-148 72-188 (270)
135 PLN02366 spermidine synthase 98.9 1.3E-08 2.9E-13 98.1 11.6 112 30-145 90-205 (308)
136 PF00891 Methyltransf_2: O-met 98.9 1.4E-08 3.1E-13 94.3 11.2 96 31-145 100-198 (241)
137 PRK10611 chemotaxis methyltran 98.9 2.2E-08 4.7E-13 95.5 12.4 107 32-145 116-261 (287)
138 PF01135 PCMT: Protein-L-isoas 98.9 1.4E-08 3.1E-13 92.7 10.6 102 29-147 70-173 (209)
139 PHA03412 putative methyltransf 98.9 1.2E-08 2.6E-13 94.2 9.5 97 32-141 50-158 (241)
140 PRK10909 rsmD 16S rRNA m(2)G96 98.8 4E-08 8.7E-13 89.1 12.6 107 31-148 53-161 (199)
141 PF05891 Methyltransf_PK: AdoM 98.8 1.2E-08 2.5E-13 92.7 8.3 105 32-145 56-160 (218)
142 COG1352 CheR Methylase of chem 98.8 7.3E-08 1.6E-12 91.0 14.0 130 8-145 73-240 (268)
143 COG1092 Predicted SAM-dependen 98.8 4.7E-08 1E-12 96.8 13.0 123 24-149 211-339 (393)
144 TIGR03439 methyl_EasF probable 98.8 1.6E-07 3.5E-12 90.8 15.3 124 29-156 74-210 (319)
145 COG2519 GCD14 tRNA(1-methylade 98.8 8.2E-08 1.8E-12 88.8 12.5 113 29-157 92-206 (256)
146 PRK03612 spermidine synthase; 98.8 5.1E-08 1.1E-12 100.6 11.7 112 30-146 296-415 (521)
147 PRK13168 rumA 23S rRNA m(5)U19 98.8 1E-07 2.2E-12 96.6 13.4 114 30-156 296-409 (443)
148 COG2263 Predicted RNA methylas 98.7 4.2E-08 9.2E-13 87.0 9.1 73 31-114 45-117 (198)
149 PF10672 Methyltrans_SAM: S-ad 98.7 1.1E-07 2.4E-12 90.5 12.7 115 31-149 123-241 (286)
150 KOG1499 Protein arginine N-met 98.7 6.5E-08 1.4E-12 93.1 10.7 108 28-143 57-164 (346)
151 COG2518 Pcm Protein-L-isoaspar 98.7 1.5E-07 3.3E-12 85.1 12.4 107 23-147 63-170 (209)
152 PF01596 Methyltransf_3: O-met 98.7 4.5E-08 9.8E-13 89.1 8.6 106 31-145 45-154 (205)
153 TIGR00095 RNA methyltransferas 98.7 2.3E-07 5.1E-12 83.4 13.2 113 31-148 49-161 (189)
154 KOG2899 Predicted methyltransf 98.7 7.6E-08 1.7E-12 88.2 9.9 114 31-145 58-208 (288)
155 PF12147 Methyltransf_20: Puta 98.7 5E-07 1.1E-11 85.2 15.5 112 31-146 135-249 (311)
156 KOG2940 Predicted methyltransf 98.7 1.1E-08 2.3E-13 93.0 4.1 111 31-154 72-182 (325)
157 KOG2904 Predicted methyltransf 98.7 4.2E-07 9E-12 84.8 14.5 149 4-157 125-299 (328)
158 PLN02476 O-methyltransferase 98.7 1.9E-07 4E-12 88.7 12.4 106 31-145 118-227 (278)
159 COG0220 Predicted S-adenosylme 98.7 1.2E-07 2.5E-12 87.6 10.1 117 33-154 50-172 (227)
160 PF10294 Methyltransf_16: Puta 98.7 3E-07 6.4E-12 81.5 12.1 112 30-148 44-158 (173)
161 PF08704 GCD14: tRNA methyltra 98.7 3.8E-07 8.3E-12 85.2 13.3 118 28-157 37-157 (247)
162 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.7 1.1E-07 2.4E-12 89.1 9.3 128 16-145 38-198 (256)
163 KOG3045 Predicted RNA methylas 98.6 1.8E-07 3.9E-12 86.4 9.8 102 8-146 163-264 (325)
164 PRK03522 rumB 23S rRNA methylu 98.6 1.3E-07 2.9E-12 91.5 9.4 111 31-156 173-283 (315)
165 PLN02672 methionine S-methyltr 98.6 3E-07 6.4E-12 101.0 12.6 112 32-148 119-280 (1082)
166 PRK11727 23S rRNA mA1618 methy 98.6 5.3E-07 1.2E-11 87.3 12.9 98 18-117 96-201 (321)
167 PF05219 DREV: DREV methyltran 98.6 1.4E-07 3.1E-12 87.7 8.4 93 32-145 95-187 (265)
168 PF05148 Methyltransf_8: Hypot 98.6 3.3E-07 7.1E-12 82.8 9.2 107 7-148 54-160 (219)
169 PTZ00338 dimethyladenosine tra 98.5 6.8E-07 1.5E-11 85.8 11.5 80 29-117 34-113 (294)
170 PF01170 UPF0020: Putative RNA 98.5 1.7E-06 3.7E-11 77.1 13.0 112 30-148 27-152 (179)
171 PRK00274 ksgA 16S ribosomal RN 98.5 1.1E-06 2.4E-11 83.4 12.5 74 30-114 41-114 (272)
172 COG4122 Predicted O-methyltran 98.5 7.4E-07 1.6E-11 81.6 10.8 104 31-145 59-165 (219)
173 PRK14896 ksgA 16S ribosomal RN 98.5 8.9E-07 1.9E-11 83.4 11.8 77 29-117 27-103 (258)
174 PF03602 Cons_hypoth95: Conser 98.5 7.4E-07 1.6E-11 79.8 10.5 123 16-149 32-156 (183)
175 PF05185 PRMT5: PRMT5 arginine 98.5 1.1E-06 2.4E-11 89.0 12.6 103 32-143 187-294 (448)
176 PLN02589 caffeoyl-CoA O-methyl 98.5 1.8E-06 4E-11 80.7 12.1 106 31-145 79-189 (247)
177 COG1041 Predicted DNA modifica 98.5 8.1E-07 1.8E-11 86.0 9.9 112 29-148 195-312 (347)
178 KOG1500 Protein arginine N-met 98.5 1.7E-06 3.7E-11 82.7 11.7 105 31-145 177-281 (517)
179 TIGR00755 ksgA dimethyladenosi 98.4 3.3E-06 7.2E-11 79.2 13.4 86 20-117 17-106 (253)
180 TIGR00479 rumA 23S rRNA (uraci 98.4 3.2E-06 6.9E-11 85.3 14.0 115 30-156 291-405 (431)
181 TIGR00478 tly hemolysin TlyA f 98.4 1.2E-06 2.7E-11 80.9 9.9 96 31-146 75-171 (228)
182 KOG3420 Predicted RNA methylas 98.4 2.8E-07 6.1E-12 78.3 4.6 76 31-114 48-123 (185)
183 PRK11933 yebU rRNA (cytosine-C 98.4 4.5E-06 9.7E-11 84.9 13.0 113 30-149 112-245 (470)
184 COG0500 SmtA SAM-dependent met 98.4 7.2E-06 1.6E-10 66.6 11.9 102 35-149 52-158 (257)
185 PRK04148 hypothetical protein; 98.3 6.5E-06 1.4E-10 69.7 11.4 96 31-149 16-112 (134)
186 TIGR02085 meth_trns_rumB 23S r 98.3 3.5E-06 7.5E-11 83.6 11.3 112 31-157 233-344 (374)
187 PLN02823 spermine synthase 98.3 3.5E-06 7.5E-11 82.3 11.0 110 31-145 103-219 (336)
188 KOG2352 Predicted spermine/spe 98.3 5E-06 1.1E-10 83.3 12.3 130 10-147 25-162 (482)
189 KOG1331 Predicted methyltransf 98.3 4.9E-07 1.1E-11 84.9 4.7 99 30-145 44-142 (293)
190 PF02475 Met_10: Met-10+ like- 98.3 1.1E-06 2.4E-11 79.6 6.5 102 27-143 97-199 (200)
191 PRK01544 bifunctional N5-gluta 98.3 3.1E-06 6.7E-11 87.2 10.6 117 31-153 347-469 (506)
192 KOG3178 Hydroxyindole-O-methyl 98.3 7.9E-06 1.7E-10 79.0 11.7 97 32-145 178-274 (342)
193 COG3963 Phospholipid N-methylt 98.3 1.3E-05 2.7E-10 69.9 11.6 107 31-146 48-156 (194)
194 PRK04338 N(2),N(2)-dimethylgua 98.2 5.2E-06 1.1E-10 82.5 9.7 108 32-154 58-166 (382)
195 PF11968 DUF3321: Putative met 98.2 4.8E-06 1E-10 75.6 8.2 118 11-150 30-153 (219)
196 PF02384 N6_Mtase: N-6 DNA Met 98.2 8.5E-06 1.9E-10 78.5 9.6 115 31-149 46-186 (311)
197 PF01728 FtsJ: FtsJ-like methy 98.2 2.7E-06 5.9E-11 75.5 5.4 116 31-158 23-154 (181)
198 KOG1269 SAM-dependent methyltr 98.2 3.5E-06 7.7E-11 82.9 6.6 118 18-145 94-214 (364)
199 PRK00050 16S rRNA m(4)C1402 me 98.1 2E-05 4.4E-10 75.5 10.2 80 30-114 18-99 (296)
200 COG0742 N6-adenine-specific me 98.1 9.7E-05 2.1E-09 66.0 13.7 113 31-149 43-157 (187)
201 PF09445 Methyltransf_15: RNA 98.1 9.3E-06 2E-10 71.2 7.0 75 34-112 2-76 (163)
202 PF03141 Methyltransf_29: Puta 98.1 3.6E-06 7.8E-11 84.7 4.9 113 33-160 119-241 (506)
203 TIGR02143 trmA_only tRNA (urac 98.1 3.6E-05 7.8E-10 75.8 11.9 111 33-157 199-321 (353)
204 PRK11783 rlmL 23S rRNA m(2)G24 98.1 6.5E-05 1.4E-09 80.4 14.3 117 30-150 189-351 (702)
205 TIGR00308 TRM1 tRNA(guanine-26 98.0 2.2E-05 4.7E-10 77.8 9.8 106 33-152 46-153 (374)
206 PRK00536 speE spermidine synth 98.0 2.9E-05 6.3E-10 73.2 10.1 97 30-145 71-170 (262)
207 TIGR02987 met_A_Alw26 type II 98.0 3.6E-05 7.9E-10 79.6 11.5 117 31-149 31-199 (524)
208 KOG1663 O-methyltransferase [S 98.0 6.9E-05 1.5E-09 68.6 11.8 107 31-145 73-182 (237)
209 PF08123 DOT1: Histone methyla 98.0 0.0001 2.2E-09 67.2 12.4 109 29-145 40-157 (205)
210 KOG3191 Predicted N6-DNA-methy 98.0 8.7E-05 1.9E-09 65.6 11.3 116 32-156 44-181 (209)
211 COG0421 SpeE Spermidine syntha 98.0 6.8E-05 1.5E-09 71.5 11.5 109 33-146 78-190 (282)
212 PF01564 Spermine_synth: Sperm 98.0 2.5E-05 5.5E-10 73.1 7.9 112 30-146 75-191 (246)
213 PF09243 Rsm22: Mitochondrial 97.9 8.4E-05 1.8E-09 70.7 11.0 119 31-160 33-156 (274)
214 COG2520 Predicted methyltransf 97.9 8.6E-05 1.9E-09 72.4 11.0 106 26-145 183-288 (341)
215 KOG1661 Protein-L-isoaspartate 97.9 5E-05 1.1E-09 68.6 8.5 103 27-145 78-192 (237)
216 COG2521 Predicted archaeal met 97.9 1.5E-05 3.2E-10 73.0 5.0 113 31-148 134-247 (287)
217 COG0144 Sun tRNA and rRNA cyto 97.9 0.00026 5.6E-09 69.8 13.7 123 22-149 145-291 (355)
218 COG0293 FtsJ 23S rRNA methylas 97.8 0.00022 4.8E-09 64.6 11.6 119 29-160 43-176 (205)
219 PF04672 Methyltransf_19: S-ad 97.8 0.00012 2.6E-09 68.9 9.9 110 33-146 70-190 (267)
220 KOG0820 Ribosomal RNA adenine 97.8 0.00012 2.7E-09 68.5 9.6 76 29-113 56-131 (315)
221 PF02527 GidB: rRNA small subu 97.8 0.00028 6E-09 63.2 11.6 116 18-149 34-152 (184)
222 PRK05031 tRNA (uracil-5-)-meth 97.8 0.00011 2.3E-09 72.8 9.6 110 33-156 208-329 (362)
223 PF07942 N2227: N2227-like pro 97.7 0.00047 1E-08 65.2 12.6 120 16-145 36-201 (270)
224 PF13679 Methyltransf_32: Meth 97.7 0.00062 1.4E-08 58.1 12.2 106 30-151 24-136 (141)
225 PF01269 Fibrillarin: Fibrilla 97.7 0.00085 1.8E-08 61.4 12.5 106 29-146 71-178 (229)
226 COG0116 Predicted N6-adenine-s 97.6 0.0013 2.8E-08 64.9 14.2 119 30-154 190-352 (381)
227 COG2265 TrmA SAM-dependent met 97.6 0.00031 6.7E-09 70.9 9.3 127 15-157 280-406 (432)
228 KOG2915 tRNA(1-methyladenosine 97.6 0.00086 1.9E-08 62.9 11.1 112 29-153 103-217 (314)
229 COG0030 KsgA Dimethyladenosine 97.5 0.0011 2.4E-08 62.3 11.4 78 29-115 28-105 (259)
230 PF04816 DUF633: Family of unk 97.5 0.0015 3.2E-08 59.6 11.5 110 35-156 1-111 (205)
231 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.5 0.0005 1.1E-08 65.7 8.8 115 30-149 84-222 (283)
232 PF03059 NAS: Nicotianamine sy 97.4 0.0025 5.5E-08 60.5 11.8 108 32-148 121-232 (276)
233 PRK11760 putative 23S rRNA C24 97.3 0.0015 3.2E-08 63.7 10.0 94 29-145 209-304 (357)
234 PF05958 tRNA_U5-meth_tr: tRNA 97.3 0.00099 2.1E-08 65.6 9.0 113 33-157 198-320 (352)
235 PF05971 Methyltransf_10: Prot 97.3 0.0021 4.6E-08 61.6 10.7 99 18-117 87-189 (299)
236 COG3897 Predicted methyltransf 97.3 0.0016 3.4E-08 58.5 8.8 119 18-151 60-184 (218)
237 PF13578 Methyltransf_24: Meth 97.3 0.00035 7.6E-09 56.2 4.2 100 36-145 1-104 (106)
238 KOG2187 tRNA uracil-5-methyltr 97.2 0.00043 9.4E-09 70.0 5.4 60 30-91 382-441 (534)
239 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0083 1.8E-07 56.6 13.8 113 30-157 29-141 (262)
240 KOG2798 Putative trehalase [Ca 97.2 0.0066 1.4E-07 58.2 12.4 179 32-287 151-365 (369)
241 KOG3987 Uncharacterized conser 97.1 0.00014 3E-09 65.7 0.2 93 32-145 113-206 (288)
242 TIGR01444 fkbM_fam methyltrans 97.1 0.002 4.4E-08 54.3 7.4 58 34-92 1-59 (143)
243 KOG2730 Methylase [General fun 97.1 0.0006 1.3E-08 62.1 4.2 79 32-113 95-173 (263)
244 COG0357 GidB Predicted S-adeno 97.0 0.008 1.7E-07 55.1 11.2 105 25-145 60-167 (215)
245 COG1189 Predicted rRNA methyla 97.0 0.0045 9.8E-08 57.2 9.2 100 30-146 78-178 (245)
246 COG4076 Predicted RNA methylas 97.0 0.0013 2.9E-08 58.6 5.4 100 32-143 33-132 (252)
247 COG1889 NOP1 Fibrillarin-like 96.9 0.025 5.4E-07 51.2 13.3 116 29-156 74-198 (231)
248 PF04989 CmcI: Cephalosporin h 96.9 0.0042 9.1E-08 56.5 7.9 118 19-145 22-146 (206)
249 KOG3201 Uncharacterized conser 96.9 0.0019 4E-08 56.3 5.3 120 31-158 29-152 (201)
250 KOG4589 Cell division protein 96.8 0.011 2.4E-07 52.8 9.9 109 29-149 67-187 (232)
251 COG4262 Predicted spermidine s 96.7 0.018 3.9E-07 56.3 11.3 111 31-146 289-407 (508)
252 KOG1709 Guanidinoacetate methy 96.7 0.014 3.1E-07 53.2 9.6 105 30-145 100-205 (271)
253 PF06962 rRNA_methylase: Putat 96.6 0.011 2.4E-07 50.5 8.2 85 56-146 1-92 (140)
254 TIGR00006 S-adenosyl-methyltra 96.6 0.017 3.8E-07 55.6 10.4 81 30-114 19-101 (305)
255 KOG2198 tRNA cytosine-5-methyl 96.6 0.029 6.3E-07 54.9 11.7 122 30-152 154-302 (375)
256 PF03492 Methyltransf_7: SAM d 96.5 0.021 4.5E-07 55.9 10.7 45 102-146 104-183 (334)
257 COG0286 HsdM Type I restrictio 96.5 0.021 4.7E-07 58.7 11.0 118 31-149 186-329 (489)
258 COG2384 Predicted SAM-dependen 96.3 0.085 1.9E-06 48.3 12.3 112 25-149 10-122 (226)
259 KOG1122 tRNA and rRNA cytosine 96.1 0.046 1E-06 54.4 10.4 114 31-149 241-374 (460)
260 PF07091 FmrO: Ribosomal RNA m 96.1 0.02 4.2E-07 53.5 7.3 107 30-149 104-211 (251)
261 PF11599 AviRa: RRNA methyltra 96.0 0.09 1.9E-06 48.1 10.9 113 31-144 51-212 (246)
262 PF01861 DUF43: Protein of unk 95.9 0.41 9E-06 44.5 15.2 119 31-160 44-166 (243)
263 COG0275 Predicted S-adenosylme 95.9 0.25 5.3E-06 47.5 13.9 47 30-76 22-70 (314)
264 KOG3115 Methyltransferase-like 95.9 0.025 5.3E-07 51.2 6.6 110 32-146 61-183 (249)
265 PRK11524 putative methyltransf 95.9 0.029 6.4E-07 53.5 7.7 55 21-76 198-252 (284)
266 PLN02668 indole-3-acetate carb 95.8 0.24 5.1E-06 49.4 14.1 46 102-147 159-238 (386)
267 PF01555 N6_N4_Mtase: DNA meth 95.8 0.03 6.4E-07 50.4 7.0 52 20-72 180-231 (231)
268 PF02005 TRM: N2,N2-dimethylgu 95.7 0.035 7.5E-07 55.3 7.5 108 31-151 49-159 (377)
269 PRK10742 putative methyltransf 95.7 0.038 8.2E-07 51.7 7.3 95 13-113 66-172 (250)
270 PF11312 DUF3115: Protein of u 95.6 0.11 2.3E-06 50.2 10.1 117 33-149 88-246 (315)
271 cd00315 Cyt_C5_DNA_methylase C 95.5 0.035 7.6E-07 52.8 6.9 73 34-117 2-74 (275)
272 COG4627 Uncharacterized protei 95.5 0.0075 1.6E-07 52.2 2.0 56 102-159 44-99 (185)
273 PRK13699 putative methylase; P 95.4 0.06 1.3E-06 49.8 7.8 55 22-77 154-208 (227)
274 PF06859 Bin3: Bicoid-interact 95.2 0.015 3.4E-07 47.4 2.6 41 105-145 1-43 (110)
275 COG1867 TRM1 N2,N2-dimethylgua 94.6 0.11 2.5E-06 50.9 7.5 125 11-149 31-157 (380)
276 KOG4058 Uncharacterized conser 94.4 0.37 8E-06 41.6 9.1 104 31-149 72-176 (199)
277 COG1064 AdhP Zn-dependent alco 94.3 0.41 8.8E-06 46.9 10.5 94 28-145 163-258 (339)
278 COG3129 Predicted SAM-dependen 94.3 0.12 2.6E-06 47.8 6.3 94 31-129 78-174 (292)
279 KOG1562 Spermidine synthase [A 94.1 0.35 7.7E-06 46.3 9.3 122 31-158 121-247 (337)
280 COG4301 Uncharacterized conser 94.1 0.86 1.9E-05 42.7 11.5 107 32-145 79-192 (321)
281 TIGR00027 mthyl_TIGR00027 meth 94.1 1.3 2.8E-05 41.8 13.2 112 33-149 83-200 (260)
282 COG5459 Predicted rRNA methyla 94.0 0.23 4.9E-06 48.6 7.9 121 32-159 114-241 (484)
283 PF03514 GRAS: GRAS domain fam 93.7 1.4 3E-05 43.9 13.2 128 31-160 110-261 (374)
284 COG4798 Predicted methyltransf 93.6 0.34 7.3E-06 43.8 7.7 109 29-145 46-165 (238)
285 PF01795 Methyltransf_5: MraW 93.2 0.27 5.8E-06 47.6 7.0 79 29-111 18-99 (310)
286 cd08283 FDH_like_1 Glutathione 93.1 0.28 6E-06 48.6 7.2 108 30-146 183-306 (386)
287 KOG1253 tRNA methyltransferase 93.1 0.058 1.3E-06 54.7 2.3 110 31-150 109-220 (525)
288 KOG1099 SAM-dependent methyltr 92.8 0.82 1.8E-05 42.4 9.1 114 32-158 42-178 (294)
289 KOG1596 Fibrillarin and relate 92.6 0.52 1.1E-05 43.9 7.7 107 27-145 152-260 (317)
290 KOG0024 Sorbitol dehydrogenase 92.5 0.74 1.6E-05 44.7 8.8 103 30-148 168-275 (354)
291 KOG2793 Putative N2,N2-dimethy 92.4 0.88 1.9E-05 42.7 9.1 109 32-147 87-200 (248)
292 PF00145 DNA_methylase: C-5 cy 92.4 0.27 5.9E-06 46.8 6.0 71 34-116 2-72 (335)
293 PF04445 SAM_MT: Putative SAM- 92.0 0.45 9.8E-06 44.2 6.6 75 33-113 77-159 (234)
294 PF03269 DUF268: Caenorhabditi 91.9 0.29 6.4E-06 42.8 4.9 104 32-149 2-114 (177)
295 PF07757 AdoMet_MTase: Predict 91.8 0.14 3.1E-06 41.7 2.6 32 31-63 58-89 (112)
296 KOG2671 Putative RNA methylase 91.6 0.45 9.7E-06 46.5 6.3 115 29-149 206-357 (421)
297 PHA01634 hypothetical protein 91.6 0.51 1.1E-05 39.8 5.8 47 31-77 28-74 (156)
298 KOG1227 Putative methyltransfe 91.4 0.15 3.4E-06 48.7 2.9 96 31-141 194-290 (351)
299 KOG1098 Putative SAM-dependent 91.3 0.24 5.2E-06 51.6 4.3 106 28-145 41-157 (780)
300 PF03141 Methyltransf_29: Puta 91.2 0.41 9E-06 48.9 5.8 111 33-160 367-479 (506)
301 COG1063 Tdh Threonine dehydrog 91.1 2 4.4E-05 42.1 10.6 98 31-145 168-268 (350)
302 cd08254 hydroxyacyl_CoA_DH 6-h 91.0 2.4 5.1E-05 40.3 10.8 99 29-146 163-263 (338)
303 KOG2539 Mitochondrial/chloropl 91.0 0.43 9.3E-06 48.3 5.7 109 32-145 201-314 (491)
304 PRK09424 pntA NAD(P) transhydr 90.6 1.6 3.6E-05 45.2 9.8 105 31-147 164-286 (509)
305 PF02254 TrkA_N: TrkA-N domain 90.3 2.7 5.8E-05 33.8 9.0 95 40-151 4-101 (116)
306 KOG0822 Protein kinase inhibit 89.8 1.3 2.8E-05 45.6 8.0 119 18-145 350-477 (649)
307 KOG1501 Arginine N-methyltrans 89.6 0.71 1.5E-05 46.5 5.8 55 33-87 68-122 (636)
308 COG3510 CmcI Cephalosporin hyd 89.5 2.6 5.7E-05 38.1 8.7 105 31-145 69-179 (237)
309 TIGR00497 hsdM type I restrict 89.2 3.7 8E-05 42.4 11.1 114 31-148 217-357 (501)
310 PF04072 LCM: Leucine carboxyl 89.2 2.5 5.4E-05 37.4 8.6 98 31-133 77-183 (183)
311 TIGR00675 dcm DNA-methyltransf 89.1 0.67 1.5E-05 44.9 5.3 70 35-116 1-70 (315)
312 PRK09880 L-idonate 5-dehydroge 88.6 2.6 5.7E-05 40.8 9.1 95 31-145 169-265 (343)
313 COG3315 O-Methyltransferase in 88.3 8 0.00017 37.3 12.0 124 17-149 82-212 (297)
314 COG0270 Dcm Site-specific DNA 87.7 1.6 3.6E-05 42.4 7.0 77 32-117 3-79 (328)
315 PF02636 Methyltransf_28: Puta 87.0 1.3 2.8E-05 41.4 5.6 59 18-76 4-72 (252)
316 KOG2920 Predicted methyltransf 86.6 1 2.2E-05 42.8 4.6 55 14-68 99-153 (282)
317 cd05188 MDR Medium chain reduc 84.4 12 0.00025 34.0 10.6 98 30-146 133-232 (271)
318 PF12692 Methyltransf_17: S-ad 84.1 2.4 5.2E-05 36.6 5.3 109 27-145 24-133 (160)
319 TIGR02356 adenyl_thiF thiazole 83.3 20 0.00044 32.2 11.5 32 32-63 21-54 (202)
320 KOG2352 Predicted spermine/spe 81.6 4.8 0.0001 41.2 7.2 116 31-149 295-421 (482)
321 PRK10458 DNA cytosine methylas 81.0 5.1 0.00011 41.1 7.3 60 32-94 88-147 (467)
322 PRK06035 3-hydroxyacyl-CoA deh 80.9 9.8 0.00021 36.1 8.9 101 33-143 4-118 (291)
323 PRK10669 putative cation:proto 80.9 14 0.0003 38.7 10.7 100 33-149 418-518 (558)
324 PRK03659 glutathione-regulated 80.8 16 0.00034 38.8 11.1 103 33-152 401-504 (601)
325 PF00107 ADH_zinc_N: Zinc-bind 80.7 4.5 9.7E-05 32.9 5.7 84 43-145 3-88 (130)
326 COG1565 Uncharacterized conser 80.1 9.1 0.0002 37.8 8.4 61 17-77 63-132 (370)
327 PRK03562 glutathione-regulated 80.1 17 0.00037 38.7 11.2 103 32-151 400-503 (621)
328 cd01487 E1_ThiF_like E1_ThiF_l 79.7 24 0.00051 31.0 10.3 31 34-64 1-33 (174)
329 PRK05786 fabG 3-ketoacyl-(acyl 79.6 43 0.00093 29.9 12.4 112 32-146 5-135 (238)
330 TIGR00561 pntA NAD(P) transhyd 79.3 6.6 0.00014 40.8 7.5 104 31-146 163-284 (511)
331 cd08237 ribitol-5-phosphate_DH 79.1 12 0.00027 36.2 9.1 92 29-145 161-255 (341)
332 PF02737 3HCDH_N: 3-hydroxyacy 79.0 4.4 9.6E-05 35.9 5.5 97 34-146 1-114 (180)
333 COG1568 Predicted methyltransf 78.9 13 0.00029 35.5 8.7 114 32-158 153-273 (354)
334 KOG2078 tRNA modification enzy 78.8 1.8 4E-05 43.4 3.1 63 28-91 246-309 (495)
335 cd08230 glucose_DH Glucose deh 78.6 20 0.00042 34.8 10.4 94 30-145 171-268 (355)
336 TIGR03451 mycoS_dep_FDH mycoth 77.9 20 0.00043 34.8 10.2 98 29-145 174-275 (358)
337 PRK08267 short chain dehydroge 77.5 36 0.00078 31.0 11.4 79 33-115 2-87 (260)
338 cd08232 idonate-5-DH L-idonate 77.4 10 0.00022 36.2 7.9 96 31-146 165-262 (339)
339 TIGR02354 thiF_fam2 thiamine b 76.9 31 0.00066 31.1 10.4 97 32-138 21-137 (200)
340 PLN03154 putative allyl alcoho 76.8 22 0.00048 34.5 10.2 99 29-145 156-257 (348)
341 COG0863 DNA modification methy 76.8 8.9 0.00019 36.1 7.2 53 24-77 215-267 (302)
342 cd08234 threonine_DH_like L-th 76.7 26 0.00056 33.2 10.5 97 30-145 158-256 (334)
343 PRK08644 thiamine biosynthesis 76.7 31 0.00067 31.4 10.4 33 31-63 27-61 (212)
344 PRK11524 putative methyltransf 76.1 3.4 7.3E-05 39.3 4.1 60 83-146 9-80 (284)
345 cd08281 liver_ADH_like1 Zinc-d 75.5 25 0.00053 34.4 10.2 98 29-145 189-289 (371)
346 PTZ00357 methyltransferase; Pr 75.4 11 0.00025 40.3 7.9 107 33-141 702-830 (1072)
347 PF05206 TRM13: Methyltransfer 75.1 22 0.00048 33.6 9.2 66 30-96 17-88 (259)
348 cd08293 PTGR2 Prostaglandin re 73.2 28 0.0006 33.3 9.8 94 33-145 156-253 (345)
349 PRK07819 3-hydroxybutyryl-CoA 72.9 16 0.00034 34.8 7.8 106 33-145 6-120 (286)
350 KOG1201 Hydroxysteroid 17-beta 72.9 26 0.00056 33.8 9.1 81 31-115 37-124 (300)
351 TIGR02822 adh_fam_2 zinc-bindi 72.8 32 0.00068 33.1 10.1 90 29-145 163-253 (329)
352 KOG2651 rRNA adenine N-6-methy 71.9 14 0.0003 36.9 7.1 41 32-72 154-194 (476)
353 PRK09496 trkA potassium transp 71.6 45 0.00098 33.4 11.3 74 31-112 230-304 (453)
354 cd00757 ThiF_MoeB_HesA_family 71.5 37 0.0008 31.1 9.7 32 32-63 21-54 (228)
355 TIGR01202 bchC 2-desacetyl-2-h 71.5 19 0.00041 34.2 8.1 85 31-145 144-230 (308)
356 cd08245 CAD Cinnamyl alcohol d 71.2 42 0.00091 31.7 10.5 96 29-146 160-256 (330)
357 PRK13699 putative methylase; P 71.1 4.7 0.0001 37.2 3.6 59 84-146 3-72 (227)
358 PRK08324 short chain dehydroge 71.0 35 0.00076 36.6 10.8 112 31-145 421-556 (681)
359 PRK08293 3-hydroxybutyryl-CoA 70.8 33 0.00071 32.5 9.5 95 33-142 4-116 (287)
360 PRK07688 thiamine/molybdopteri 70.8 33 0.00072 33.6 9.7 77 32-112 24-123 (339)
361 cd08239 THR_DH_like L-threonin 70.7 55 0.0012 31.2 11.2 96 30-145 162-261 (339)
362 PF10237 N6-adenineMlase: Prob 70.7 57 0.0012 28.6 10.1 101 29-149 23-126 (162)
363 PRK09496 trkA potassium transp 70.6 47 0.001 33.3 11.1 97 34-146 2-99 (453)
364 cd00401 AdoHcyase S-adenosyl-L 70.6 21 0.00045 36.1 8.3 86 31-145 201-288 (413)
365 cd05278 FDH_like Formaldehyde 70.1 47 0.001 31.6 10.6 97 30-145 166-266 (347)
366 PRK07411 hypothetical protein; 70.1 46 0.001 33.2 10.7 95 32-137 38-153 (390)
367 PLN02545 3-hydroxybutyryl-CoA 69.8 25 0.00053 33.4 8.4 98 33-143 5-116 (295)
368 PF10354 DUF2431: Domain of un 69.1 44 0.00095 29.2 9.2 61 86-149 58-128 (166)
369 TIGR03366 HpnZ_proposed putati 69.0 35 0.00077 31.8 9.3 94 31-145 120-217 (280)
370 KOG3924 Putative protein methy 68.8 29 0.00062 34.8 8.6 120 18-145 179-307 (419)
371 PRK09260 3-hydroxybutyryl-CoA 68.6 38 0.00082 32.0 9.4 96 34-144 3-115 (288)
372 PRK09242 tropinone reductase; 68.5 93 0.002 28.2 12.6 85 31-115 8-98 (257)
373 COG0569 TrkA K+ transport syst 67.9 24 0.00051 32.4 7.6 72 33-112 1-73 (225)
374 cd08255 2-desacetyl-2-hydroxye 67.7 39 0.00085 31.0 9.2 93 29-145 95-189 (277)
375 TIGR02825 B4_12hDH leukotriene 67.7 53 0.0011 31.1 10.3 98 29-145 136-236 (325)
376 PF06016 Reovirus_L2: Reovirus 67.6 9.1 0.0002 43.4 5.4 96 32-141 823-920 (1289)
377 COG1255 Uncharacterized protei 67.5 28 0.0006 28.9 6.9 87 33-145 15-101 (129)
378 cd08261 Zn_ADH7 Alcohol dehydr 67.4 46 0.00099 31.7 9.9 98 29-145 157-257 (337)
379 PRK01747 mnmC bifunctional tRN 67.3 12 0.00026 40.0 6.3 116 31-157 57-216 (662)
380 PLN02740 Alcohol dehydrogenase 67.1 45 0.00097 32.7 9.9 100 29-145 196-299 (381)
381 PF05711 TylF: Macrocin-O-meth 66.9 19 0.0004 33.9 6.7 107 32-149 75-215 (248)
382 PRK07576 short chain dehydroge 66.9 91 0.002 28.6 11.5 81 31-113 8-94 (264)
383 PRK07530 3-hydroxybutyryl-CoA 66.4 69 0.0015 30.3 10.8 95 33-143 5-116 (292)
384 cd08295 double_bond_reductase_ 66.2 59 0.0013 31.0 10.4 99 29-145 149-250 (338)
385 PRK06701 short chain dehydroge 66.2 1.1E+02 0.0023 28.8 12.0 112 32-145 46-180 (290)
386 PRK07231 fabG 3-ketoacyl-(acyl 66.2 99 0.0021 27.7 11.6 81 32-115 5-91 (251)
387 cd08294 leukotriene_B4_DH_like 65.9 56 0.0012 30.7 10.1 97 29-145 141-240 (329)
388 PRK08762 molybdopterin biosynt 65.6 43 0.00094 33.2 9.5 33 31-63 134-168 (376)
389 PRK12939 short chain dehydroge 65.2 88 0.0019 28.0 10.9 81 32-114 7-93 (250)
390 PRK07417 arogenate dehydrogena 65.1 72 0.0016 30.0 10.5 85 34-142 2-87 (279)
391 PF03446 NAD_binding_2: NAD bi 64.6 50 0.0011 28.4 8.6 100 34-158 3-106 (163)
392 PF11899 DUF3419: Protein of u 64.5 11 0.00023 37.7 4.9 59 81-146 275-334 (380)
393 PRK08328 hypothetical protein; 64.4 62 0.0014 29.7 9.7 32 32-63 27-60 (231)
394 cd00755 YgdL_like Family of ac 64.2 75 0.0016 29.4 10.2 33 32-64 11-45 (231)
395 PRK07109 short chain dehydroge 64.0 96 0.0021 29.9 11.4 81 32-114 8-94 (334)
396 PRK08223 hypothetical protein; 63.9 39 0.00084 32.5 8.4 77 31-111 26-123 (287)
397 cd01483 E1_enzyme_family Super 63.9 58 0.0013 27.1 8.7 30 34-63 1-32 (143)
398 PRK05690 molybdopterin biosynt 63.4 64 0.0014 30.0 9.6 33 31-63 31-65 (245)
399 PRK07063 short chain dehydroge 63.0 74 0.0016 28.9 10.1 83 32-114 7-95 (260)
400 PRK05808 3-hydroxybutyryl-CoA 63.0 26 0.00056 33.0 7.0 92 34-142 5-114 (282)
401 KOG2013 SMT3/SUMO-activating c 62.8 18 0.00039 37.1 6.0 77 31-110 11-108 (603)
402 PRK08217 fabG 3-ketoacyl-(acyl 62.8 42 0.0009 30.1 8.2 81 32-114 5-91 (253)
403 cd08285 NADP_ADH NADP(H)-depen 62.3 75 0.0016 30.5 10.4 98 29-145 164-265 (351)
404 PRK12475 thiamine/molybdopteri 62.3 53 0.0012 32.2 9.3 78 32-113 24-124 (338)
405 PLN02827 Alcohol dehydrogenase 61.9 72 0.0016 31.4 10.3 98 29-145 191-294 (378)
406 PRK07066 3-hydroxybutyryl-CoA 61.8 28 0.00062 33.9 7.2 106 33-145 8-117 (321)
407 KOG2912 Predicted DNA methylas 61.8 18 0.0004 35.3 5.6 78 35-114 106-187 (419)
408 PRK10083 putative oxidoreducta 61.8 80 0.0017 29.9 10.4 98 29-145 158-258 (339)
409 PF11899 DUF3419: Protein of u 61.1 23 0.0005 35.4 6.6 46 29-75 33-78 (380)
410 TIGR00006 S-adenosyl-methyltra 60.9 13 0.00029 35.9 4.7 36 122-157 216-253 (305)
411 PRK05854 short chain dehydroge 60.6 73 0.0016 30.4 9.8 83 32-115 14-103 (313)
412 cd01488 Uba3_RUB Ubiquitin act 60.6 91 0.002 30.0 10.3 74 34-112 1-95 (291)
413 PF00106 adh_short: short chai 60.3 46 0.00099 27.8 7.6 81 34-116 2-91 (167)
414 TIGR03201 dearomat_had 6-hydro 60.2 36 0.00079 32.8 7.7 44 29-72 164-208 (349)
415 PLN02586 probable cinnamyl alc 60.2 61 0.0013 31.6 9.4 95 30-145 182-277 (360)
416 PRK08265 short chain dehydroge 59.2 1.4E+02 0.003 27.3 11.2 78 32-114 6-89 (261)
417 PRK07806 short chain dehydroge 59.1 1.3E+02 0.0029 26.8 12.3 112 32-145 6-133 (248)
418 COG1748 LYS9 Saccharopine dehy 58.9 62 0.0013 32.5 9.1 73 33-113 2-76 (389)
419 COG0604 Qor NADPH:quinone redu 58.5 1E+02 0.0022 29.9 10.5 98 29-146 140-241 (326)
420 PRK05597 molybdopterin biosynt 58.4 74 0.0016 31.4 9.6 79 31-113 27-126 (355)
421 PRK07062 short chain dehydroge 58.2 96 0.0021 28.3 9.9 85 31-115 7-97 (265)
422 cd08278 benzyl_alcohol_DH Benz 58.1 1.2E+02 0.0025 29.5 10.9 97 30-145 185-284 (365)
423 PF05050 Methyltransf_21: Meth 58.0 26 0.00057 29.3 5.6 37 37-73 1-42 (167)
424 PRK07502 cyclohexadienyl dehyd 57.5 91 0.002 29.7 9.9 90 33-145 7-99 (307)
425 TIGR02819 fdhA_non_GSH formald 57.5 96 0.0021 30.8 10.4 108 29-145 183-298 (393)
426 cd08236 sugar_DH NAD(P)-depend 56.5 99 0.0021 29.4 10.0 99 29-146 157-258 (343)
427 cd00650 LDH_MDH_like NAD-depen 56.3 88 0.0019 29.1 9.4 83 55-146 27-119 (263)
428 PRK00050 16S rRNA m(4)C1402 me 56.3 18 0.00039 34.9 4.7 35 122-156 212-248 (296)
429 PRK10309 galactitol-1-phosphat 56.2 1.2E+02 0.0025 29.1 10.5 98 29-145 158-259 (347)
430 PRK06125 short chain dehydroge 55.6 86 0.0019 28.5 9.1 83 32-115 7-91 (259)
431 PF01795 Methyltransf_5: MraW 55.4 13 0.00029 36.0 3.6 37 122-158 217-255 (310)
432 PRK06130 3-hydroxybutyryl-CoA 55.0 67 0.0015 30.6 8.5 101 33-149 5-117 (311)
433 PF01210 NAD_Gly3P_dh_N: NAD-d 55.0 59 0.0013 27.8 7.4 101 34-145 1-102 (157)
434 cd08238 sorbose_phosphate_red 54.8 1.2E+02 0.0027 30.0 10.7 107 29-145 173-287 (410)
435 cd01489 Uba2_SUMO Ubiquitin ac 54.7 1.5E+02 0.0033 28.7 10.8 93 34-136 1-114 (312)
436 cd08296 CAD_like Cinnamyl alco 54.4 1.5E+02 0.0031 28.2 10.8 97 29-145 161-258 (333)
437 PRK07904 short chain dehydroge 54.3 98 0.0021 28.3 9.2 84 30-115 6-97 (253)
438 PRK06129 3-hydroxyacyl-CoA deh 54.0 59 0.0013 31.1 7.9 42 33-74 3-45 (308)
439 COG0287 TyrA Prephenate dehydr 53.7 1E+02 0.0022 29.4 9.4 104 33-158 4-110 (279)
440 TIGR02355 moeB molybdopterin s 53.7 1.2E+02 0.0026 28.0 9.7 34 32-65 24-59 (240)
441 PRK07890 short chain dehydroge 53.6 1.1E+02 0.0023 27.7 9.3 81 32-114 5-91 (258)
442 PRK07889 enoyl-(acyl carrier p 53.5 1.8E+02 0.0039 26.6 10.9 109 32-145 7-144 (256)
443 PRK06124 gluconate 5-dehydroge 53.5 1.3E+02 0.0027 27.2 9.8 82 31-114 10-97 (256)
444 PRK06940 short chain dehydroge 53.5 98 0.0021 28.7 9.2 109 34-145 4-124 (275)
445 PRK12829 short chain dehydroge 53.2 83 0.0018 28.5 8.6 80 31-114 10-95 (264)
446 TIGR02441 fa_ox_alpha_mit fatt 52.5 20 0.00042 39.1 4.8 104 33-145 336-449 (737)
447 PRK12826 3-ketoacyl-(acyl-carr 52.4 1.7E+02 0.0037 26.0 12.4 82 32-115 6-93 (251)
448 PRK09072 short chain dehydroge 52.3 1.8E+02 0.004 26.4 11.5 80 32-115 5-90 (263)
449 PF02153 PDH: Prephenate dehyd 52.2 58 0.0013 30.4 7.4 86 49-158 5-91 (258)
450 TIGR02437 FadB fatty oxidation 52.2 69 0.0015 34.8 8.8 104 33-143 314-425 (714)
451 cd08233 butanediol_DH_like (2R 52.1 1.6E+02 0.0034 28.2 10.7 98 29-145 170-271 (351)
452 PRK07533 enoyl-(acyl carrier p 52.1 1.9E+02 0.0041 26.4 12.3 111 31-145 9-147 (258)
453 PRK05867 short chain dehydroge 52.0 1.2E+02 0.0026 27.4 9.5 83 31-115 8-96 (253)
454 PRK06172 short chain dehydroge 51.7 1.1E+02 0.0024 27.6 9.1 81 32-114 7-93 (253)
455 cd05285 sorbitol_DH Sorbitol d 51.6 1.3E+02 0.0029 28.6 10.1 99 29-146 160-265 (343)
456 PRK07097 gluconate 5-dehydroge 51.1 1.4E+02 0.003 27.3 9.7 83 31-115 9-97 (265)
457 PRK08306 dipicolinate synthase 50.9 64 0.0014 30.9 7.6 89 31-145 151-240 (296)
458 PRK07677 short chain dehydroge 50.6 90 0.002 28.2 8.3 80 33-114 2-87 (252)
459 PRK06197 short chain dehydroge 50.5 1.1E+02 0.0024 28.8 9.2 85 31-115 15-105 (306)
460 PRK07877 hypothetical protein; 50.4 1.2E+02 0.0026 33.1 10.2 78 31-112 106-203 (722)
461 PRK06128 oxidoreductase; Provi 50.4 1.8E+02 0.004 27.2 10.7 112 32-145 55-190 (300)
462 PRK12480 D-lactate dehydrogena 50.4 1.2E+02 0.0027 29.5 9.6 100 31-157 145-249 (330)
463 PRK06181 short chain dehydroge 50.2 2E+02 0.0043 26.1 11.5 80 33-114 2-87 (263)
464 PRK14852 hypothetical protein; 49.9 2.1E+02 0.0045 32.4 12.0 77 31-111 331-428 (989)
465 PRK08594 enoyl-(acyl carrier p 49.8 2.1E+02 0.0045 26.2 11.8 80 31-114 6-96 (257)
466 PRK06194 hypothetical protein; 49.8 1.1E+02 0.0024 28.2 8.9 82 32-115 6-93 (287)
467 PRK08340 glucose-1-dehydrogena 49.7 1.1E+02 0.0024 27.8 8.8 77 34-114 2-85 (259)
468 PRK09186 flagellin modificatio 49.6 1.2E+02 0.0026 27.3 9.0 82 32-113 4-91 (256)
469 PRK07831 short chain dehydroge 49.6 1.1E+02 0.0025 27.7 8.9 84 32-115 17-107 (262)
470 cd08243 quinone_oxidoreductase 49.5 1.9E+02 0.004 26.7 10.5 96 29-145 140-237 (320)
471 PRK08251 short chain dehydroge 49.3 1.7E+02 0.0037 26.1 10.0 80 33-114 3-90 (248)
472 cd08242 MDR_like Medium chain 49.0 1.5E+02 0.0032 27.8 9.8 90 29-144 153-243 (319)
473 PRK05600 thiamine biosynthesis 48.8 1.2E+02 0.0027 30.1 9.4 33 31-63 40-74 (370)
474 PRK07035 short chain dehydroge 48.7 1.7E+02 0.0038 26.2 9.9 81 32-114 8-94 (252)
475 PRK08655 prephenate dehydrogen 48.2 1.6E+02 0.0035 29.9 10.3 100 34-157 2-103 (437)
476 PRK05884 short chain dehydroge 47.4 2.1E+02 0.0045 25.6 10.1 106 34-146 2-130 (223)
477 PRK09422 ethanol-active dehydr 47.4 2E+02 0.0044 27.1 10.6 98 29-145 160-260 (338)
478 PRK07523 gluconate 5-dehydroge 47.2 1.5E+02 0.0031 26.9 9.2 83 31-115 9-97 (255)
479 PRK13394 3-hydroxybutyrate deh 47.2 1.3E+02 0.0028 27.2 8.8 82 32-115 7-94 (262)
480 PRK06153 hypothetical protein; 46.2 1.4E+02 0.003 30.1 9.2 32 32-63 176-209 (393)
481 PRK05875 short chain dehydroge 46.2 1.5E+02 0.0033 27.1 9.3 83 32-114 7-95 (276)
482 PRK12429 3-hydroxybutyrate deh 46.1 2.2E+02 0.0048 25.5 11.5 81 32-114 4-90 (258)
483 PRK05708 2-dehydropantoate 2-r 46.1 1.9E+02 0.004 27.7 10.0 98 33-145 3-103 (305)
484 cd08240 6_hydroxyhexanoate_dh_ 46.1 1.8E+02 0.0039 27.7 10.1 96 31-145 175-273 (350)
485 PRK11154 fadJ multifunctional 46.1 27 0.00058 37.8 4.6 95 33-143 310-422 (708)
486 KOG0821 Predicted ribosomal RN 45.8 39 0.00085 31.4 4.8 65 31-97 50-114 (326)
487 PRK05876 short chain dehydroge 45.8 1.9E+02 0.0041 26.8 9.9 82 32-115 6-93 (275)
488 PRK07478 short chain dehydroge 45.6 2E+02 0.0043 25.9 9.8 82 32-115 6-93 (254)
489 PRK07814 short chain dehydroge 45.6 1.6E+02 0.0034 26.9 9.2 82 31-114 9-96 (263)
490 PRK14851 hypothetical protein; 45.5 1.9E+02 0.0042 31.2 10.8 78 31-112 42-140 (679)
491 PRK12742 oxidoreductase; Provi 45.4 2.2E+02 0.0047 25.2 11.7 106 32-145 6-130 (237)
492 PRK05866 short chain dehydroge 45.3 1.4E+02 0.003 28.1 9.0 82 32-115 40-127 (293)
493 PRK11730 fadB multifunctional 45.2 1E+02 0.0022 33.4 8.8 95 33-143 314-425 (715)
494 PRK08213 gluconate 5-dehydroge 45.2 1.5E+02 0.0033 26.8 9.0 82 31-114 11-98 (259)
495 TIGR02279 PaaC-3OHAcCoADH 3-hy 45.1 91 0.002 32.4 8.1 94 33-143 6-117 (503)
496 cd08300 alcohol_DH_class_III c 45.0 2E+02 0.0042 27.9 10.2 98 29-145 184-287 (368)
497 PF02086 MethyltransfD12: D12 44.7 32 0.00069 31.6 4.3 58 15-76 7-64 (260)
498 PLN03209 translocon at the inn 44.6 1.7E+02 0.0037 31.0 10.0 82 31-115 79-169 (576)
499 PRK07454 short chain dehydroge 44.1 1.7E+02 0.0037 26.0 9.1 82 32-115 6-93 (241)
500 cd01484 E1-2_like Ubiquitin ac 44.0 2.7E+02 0.0058 25.8 10.4 93 34-136 1-115 (234)
No 1
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=100.00 E-value=3.3e-59 Score=451.36 Aligned_cols=270 Identities=36% Similarity=0.644 Sum_probs=208.1
Q ss_pred CCCcch---HHHHHHHHHHHHHHHcCC------CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh-
Q 018352 7 PRSELT---HHRLYEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN- 76 (357)
Q Consensus 7 ~r~~~p---~~~~~nwvks~Li~~~~~------~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~- 76 (357)
.|.+|+ .+++|||||++||+.+++ ++.+|||||||+|||+.||..+++.+|+|+|||.++|++|++|++.
T Consensus 29 ~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 29 ERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQL 108 (331)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred hhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 577776 566899999999999998 8899999999999999999999999999999999999999999943
Q ss_pred --------cCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 77 --------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 77 --------~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
.+..+.+.|+.+|++...+...+.....+||+|+|||+|||+|+++++++.+|+||++.|+|||+||||+||
T Consensus 109 ~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 109 KKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 122478899999999877765554434699999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHH
Q 018352 149 SSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAR 228 (357)
Q Consensus 149 ~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~ 228 (357)
++.|++++++.... .....||| ++|+|+|+.+ ...|.||++|.|+|++.+.+|+||||+|+.|++||+
T Consensus 189 ~~~i~~~l~~~~~~-------~~~~~~gN----~~y~I~f~~~-~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~ 256 (331)
T PF03291_consen 189 SDEIVKRLREKKSN-------SEKKKFGN----SVYSIEFDSD-DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAK 256 (331)
T ss_dssp HHHHHCCHHC-EEE-------CCCSCSET----SSEEEEESCC-SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHH
T ss_pred HHHHHHHHHhhccc-------ccccccCC----ccEEEEeccc-CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHH
Confidence 99999888752110 01124555 5799999876 577899999999999998899999999999999999
Q ss_pred HcCCEEEEecCchHHHHhhHHH--HHHHHHhcC---CCCC---------CCCCCCChhHHHHHh-hheeEEEEec
Q 018352 229 EAGLEYVEIQNLNEFYDDNRAL--FAGMLMSAG---PNLI---------DPRGRLLPRSYDVLG-LYSTFIFQKP 288 (357)
Q Consensus 229 e~Glelv~~~~f~~f~~~~~~~--~~~~~~~~~---~~~~---------~~~g~l~~~e~e~~~-lY~~f~F~K~ 288 (357)
||||++|+.++|+|||+++.+. ...+++++. ..-. ...|++|.+|||+++ ||++|||+|.
T Consensus 257 eyGLeLV~~~~F~ef~~e~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~ewea~~~lY~~F~F~K~ 331 (331)
T PF03291_consen 257 EYGLELVEKKNFHEFYEEEKNKYEKRSLLERMKALEKRPGSYNDNEQKRISLGTLSKDEWEAASSLYLVFAFKKK 331 (331)
T ss_dssp HTTEEEEEEEEHHHHHHHHCCCCHCHHHHHCHGGG--SHHHHHHHHHHHHHCCSS-CCCHHHHCTTEEEEEEEE-
T ss_pred HcCCEEEEeCChHHHHHHhccCchhhHHHHHHHhhcCCCCcccchhhccccccCCCHHHHHHHHhheEEEEEEeC
Confidence 9999999999999999975321 112222211 1000 013689999999999 9999999995
No 2
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=100.00 E-value=1.9e-58 Score=429.84 Aligned_cols=276 Identities=32% Similarity=0.498 Sum_probs=235.8
Q ss_pred CCCcch---HHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC-----
Q 018352 7 PRSELT---HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----- 78 (357)
Q Consensus 7 ~r~~~p---~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~----- 78 (357)
.|..|| .+++|||||++||+.|.+++..++|||||+||||.||.+++++.|+|+||++.+|++|++||+++.
T Consensus 90 ~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~ 169 (389)
T KOG1975|consen 90 KRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK 169 (389)
T ss_pred hhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc
Confidence 577777 467899999999999999999999999999999999999999999999999999999999998642
Q ss_pred CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352 79 KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (357)
Q Consensus 79 ~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~ 158 (357)
..|.+.|+.+|++...+.+.+..++.+||+|+|||++||+|+++++++.+|+|++++|+|||+||+|+||++.|++++++
T Consensus 170 ~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 170 FIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred ccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 34679999999999888776654455599999999999999999999999999999999999999999999999999985
Q ss_pred hHHhhhcCCCCCCCCCCCCccCCccEEEEeeccc---CCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEE
Q 018352 159 NVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYV 235 (357)
Q Consensus 159 ~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~~---~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv 235 (357)
. + ...|||+ +|+|+|+.+. ...|+||.+|+|+|+++| +||||||+|+.|+.||++|||+||
T Consensus 250 ~-e----------~~~~gNd----iykv~y~~~~~k~~~~p~fG~kY~F~LedaV-dcPEylV~F~~l~~lae~y~LeLv 313 (389)
T KOG1975|consen 250 G-E----------VERFGND----IYKVTYEIEFQKEFDVPPFGAKYRFHLEDAV-DCPEYLVPFPTLVSLAEEYGLELV 313 (389)
T ss_pred c-c----------chhhcce----eeeEeeeeecccccCCCCccceEEEEccccc-CCcceeeehHHHHHHHHhcCcEEE
Confidence 3 1 1367776 6887776432 237999999999999976 599999999999999999999999
Q ss_pred EecCchHHHHhhHHH--HHHHHHhcC-CCCCCCCCCCChhHHHHHhhheeEEEEecCCCCCCCCcc
Q 018352 236 EIQNLNEFYDDNRAL--FAGMLMSAG-PNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLAT 298 (357)
Q Consensus 236 ~~~~f~~f~~~~~~~--~~~~~~~~~-~~~~~~~g~l~~~e~e~~~lY~~f~F~K~~~~~~~~~~~ 298 (357)
..++|+|||+++.+. +..++++|. ..-...++..+.+|||++++|.+|+++|..-.-.+.++.
T Consensus 314 ~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~~~~~~~~de~e~a~~~l~~~~~~~~ir~~gtlsk 379 (389)
T KOG1975|consen 314 FVKPFADFYEEELKKNEERELLKRMEGLECYPNEEGESGDEYEAASFYLTFFPEKDRIRYEGTLSK 379 (389)
T ss_pred EeccHHHHHHHhccccchhhHHHHHhcccCCCccccccchHHHHHHHHHhhhhhccccccccccch
Confidence 999999999997655 478888873 222223456788999999999999999886654444443
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.87 E-value=2.3e-21 Score=178.96 Aligned_cols=176 Identities=26% Similarity=0.366 Sum_probs=131.0
Q ss_pred HHHHHHHHHHc-CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352 18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95 (357)
Q Consensus 18 nwvks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~ 95 (357)
.| +..++... ..++.+|||+|||||..+..+++. +.++++|+|+|+.||+.|++|....+... ++|+++|+...++
T Consensus 38 ~W-r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf 115 (238)
T COG2226 38 LW-RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF 115 (238)
T ss_pred HH-HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC
Confidence 45 44444443 447999999999999888888776 56799999999999999999998765443 9999999999998
Q ss_pred hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHhHHhhhcCCCCCCC
Q 018352 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNVEAYHNRSSSMKP 172 (357)
Q Consensus 96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~~~~~~~~~~~~~~ 172 (357)
++++||+|+|.|++|+ +. +..++|++++|+|||||++++. .|+...+...+..-...
T Consensus 116 ------~D~sFD~vt~~fglrn-v~---d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~---------- 175 (238)
T COG2226 116 ------PDNSFDAVTISFGLRN-VT---DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFK---------- 175 (238)
T ss_pred ------CCCccCEEEeeehhhc-CC---CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHH----------
Confidence 7899999999999999 53 5778899999999999999887 34443333322211100
Q ss_pred CCCCCccCCccEEEEeecccCCCCccce-------eeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352 173 NLVPNCIRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (357)
Q Consensus 173 ~~fgn~i~~~~y~i~f~~~~~~~p~fG~-------~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f 240 (357)
...|.+|. .|.| |.+++. .+...+.|.++.++.||+.+...++
T Consensus 176 --------------------~v~P~~g~~~~~~~~~y~y-L~eSi~----~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 176 --------------------YVLPLIGKLVAKDAEAYEY-LAESIR----RFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred --------------------hHhhhhceeeecChHHHHH-HHHHHH----hCCCHHHHHHHHHhcCceEEeeEee
Confidence 01122222 3555 555543 3568899999999999999886554
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.86 E-value=1.6e-21 Score=180.65 Aligned_cols=165 Identities=26% Similarity=0.392 Sum_probs=82.0
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
..++.+|||+|||+|..+..+++. +..+|+|+|+|+.||+.|+++.+..... +++|+++|+...++ ++++|
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~------~d~sf 117 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF------PDNSF 117 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-------TT-E
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC------CCCce
Confidence 347889999999999666666554 3469999999999999999999875443 89999999999888 67999
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCcc
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES 183 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~ 183 (357)
|+|+|.|++|+ +.+ ..+++++++|+|||||++++. .|+.. +++.+.+.
T Consensus 118 D~v~~~fglrn-~~d---~~~~l~E~~RVLkPGG~l~ile~~~p~~~-~~~~~~~~------------------------ 168 (233)
T PF01209_consen 118 DAVTCSFGLRN-FPD---RERALREMYRVLKPGGRLVILEFSKPRNP-LLRALYKF------------------------ 168 (233)
T ss_dssp EEEEEES-GGG--SS---HHHHHHHHHHHEEEEEEEEEEEEEB-SSH-HHHHHHHH------------------------
T ss_pred eEEEHHhhHHh-hCC---HHHHHHHHHHHcCCCeEEEEeeccCCCCc-hhhceeee------------------------
Confidence 99999999998 543 567899999999999999877 45543 33333211
Q ss_pred EEEEeecccCCCCccc-------eeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352 184 YVITFEVEEEKFPLFG-------KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (357)
Q Consensus 184 y~i~f~~~~~~~p~fG-------~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f 240 (357)
|.- ...|.+| ..|.| |.+++. -+.+.+.|.++++++||+.++.+++
T Consensus 169 y~~------~ilP~~g~l~~~~~~~Y~y-L~~Si~----~f~~~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 169 YFK------YILPLIGRLLSGDREAYRY-LPESIR----RFPSPEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp ----------------------------------------------------------------
T ss_pred eec------ccccccccccccccccccc-cccccc----ccccccccccccccccccccccccc
Confidence 110 0122222 24766 777654 3568899999999999999987765
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.76 E-value=1.2e-17 Score=152.72 Aligned_cols=175 Identities=17% Similarity=0.248 Sum_probs=126.9
Q ss_pred HHHHHHHcCC-CCCEEEEECCCCChhHHHHHHh-c------CCeEEEEeCChHHHHHHHHHhHhcCCCc--eeEEEEcCC
Q 018352 21 KTALIKIYSH-PYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRKNF--IAEFFEADP 90 (357)
Q Consensus 21 ks~Li~~~~~-~~~~VLDlGCG~G~~l~k~~~~-~------~~~v~GiDiS~~~l~~A~~r~~~~~~~~--~v~f~~~D~ 90 (357)
|..++..+-+ ++++|||+|||||-.+..+.+. + .++|+++|||++||+.+++|.+...... .+.|+++|+
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 5555554433 5789999999999766666654 2 2689999999999999999986644322 489999999
Q ss_pred CCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc-h-HHHHHHHHhHHhhhcCCC
Q 018352 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-S-TIWAKYQKNVEAYHNRSS 168 (357)
Q Consensus 91 ~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~-~-~i~~~~~~~~~~~~~~~~ 168 (357)
...+| ++.+||+.++.|++.+ +. +.++.|++++|+|||||+|.+.-.+. + ..++.+..
T Consensus 169 E~LpF------dd~s~D~yTiafGIRN-~t---h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~---------- 228 (296)
T KOG1540|consen 169 EDLPF------DDDSFDAYTIAFGIRN-VT---HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD---------- 228 (296)
T ss_pred ccCCC------CCCcceeEEEecceec-CC---CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH----------
Confidence 99998 6899999999999999 43 46678999999999999999774332 2 22222211
Q ss_pred CCCCCCCCCccCCccEEEEeecccCCCCccce-------eeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEE-ecCc
Q 018352 169 SMKPNLVPNCIRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE-IQNL 240 (357)
Q Consensus 169 ~~~~~~fgn~i~~~~y~i~f~~~~~~~p~fG~-------~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~-~~~f 240 (357)
.|+ | +.+|..|. .|+| |.+++.. +.+.+.|..+.+++||..+. ..+|
T Consensus 229 --------------~ys--f----~VlpvlG~~iagd~~sYqY-LveSI~r----fp~qe~f~~miedaGF~~~~~ye~l 283 (296)
T KOG1540|consen 229 --------------QYS--F----DVLPVLGEIIAGDRKSYQY-LVESIRR----FPPQEEFASMIEDAGFSSVNGYENL 283 (296)
T ss_pred --------------hhh--h----hhhchhhHhhhhhHhhhhh-HHhhhhc----CCCHHHHHHHHHHcCCccccccccc
Confidence 011 1 12344443 3666 6666644 45889999999999999986 4433
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=8.4e-18 Score=136.98 Aligned_cols=109 Identities=27% Similarity=0.338 Sum_probs=90.4
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCC-CCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~-~~~~~~~~l~~~~~~FDl 108 (357)
|+.+|||||||+|..+..+++. +..+++|+|+|++|++.|+++........+++|+++|+ .... ...+||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------FLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------TSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------cCCCCCE
Confidence 5789999999999998888883 67799999999999999999996555566899999999 2222 2467999
Q ss_pred EEEcc-chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 109 V~~~~-~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|++.. ++|+.+ +.++.+++++++.+.|+|||+++++++
T Consensus 74 v~~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 74 VICSGFTLHFLL-PLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EEECSGSGGGCC-HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEECCCcccccc-chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999 677545 337789999999999999999998764
No 7
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=1.5e-17 Score=160.73 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=114.2
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||||||+|..+..++.. ..+|+|+|+|++|++.|+++........+++|+++|+...++ .+++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence 4569999999999887777654 459999999999999999876543322368899999765443 457899999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeec
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV 190 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~ 190 (357)
|..++|+ +. +...++++++++|||||.+++++++.... .+... .++. .|...
T Consensus 204 ~~~vLeH-v~---d~~~~L~~l~r~LkPGG~liist~nr~~~--~~~~~--------------i~~~-----eyi~~--- 255 (322)
T PLN02396 204 SLEVIEH-VA---NPAEFCKSLSALTIPNGATVLSTINRTMR--AYAST--------------IVGA-----EYILR--- 255 (322)
T ss_pred EhhHHHh-cC---CHHHHHHHHHHHcCCCcEEEEEECCcCHH--HHHHh--------------hhhH-----HHHHh---
Confidence 9999988 43 35679999999999999999999886432 11000 0000 01000
Q ss_pred ccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCch
Q 018352 191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (357)
Q Consensus 191 ~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~ 241 (357)
..|. |. .....+++++.+.++++++||++++...+.
T Consensus 256 ---~lp~-gt-----------h~~~~f~tp~eL~~lL~~aGf~i~~~~G~~ 291 (322)
T PLN02396 256 ---WLPK-GT-----------HQWSSFVTPEELSMILQRASVDVKEMAGFV 291 (322)
T ss_pred ---cCCC-CC-----------cCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence 0011 10 011136789999999999999999988774
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.73 E-value=8.7e-17 Score=151.54 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=88.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHh--cCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWEN--QRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~--~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
.++.+|||+|||+|..+..+... + ..+|+|+|+|++|++.|+++... .....+++++++|+...++ ++++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------~~~s 145 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------DDCY 145 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------CCCC
Confidence 46789999999999877666554 2 35899999999999999887642 1122368999999988776 5689
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
||+|+|.+++|+ +. +..+++++++++|||||+++++...
T Consensus 146 fD~V~~~~~l~~-~~---d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 146 FDAITMGYGLRN-VV---DRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EeEEEEeccccc-CC---CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999999998 43 4677899999999999999888543
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.73 E-value=2.7e-17 Score=128.94 Aligned_cols=95 Identities=26% Similarity=0.339 Sum_probs=81.8
Q ss_pred EEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccch
Q 018352 36 CDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL 115 (357)
Q Consensus 36 LDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~l 115 (357)
||+|||+|..+..+.+.+..+|+|+|+|+++++.|+++.... .+.+.++|....++ ++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~------~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPF------PDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-------TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcc------ccccccccccccce
Confidence 899999999998888886779999999999999999998765 45699999999887 67999999999999
Q ss_pred hhccCCHHHHHHHHHHHHhcccCCcEEEE
Q 018352 116 QMCFETEERARRLLQNVSSLLKPGGYFLG 144 (357)
Q Consensus 116 h~~fes~~~~~~~L~~i~~~LkpGG~fi~ 144 (357)
||+ ++..++++++.|+|||||++++
T Consensus 71 ~~~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHL----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence 993 5788999999999999999985
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.71 E-value=1.1e-17 Score=152.70 Aligned_cols=171 Identities=20% Similarity=0.256 Sum_probs=119.1
Q ss_pred HHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh
Q 018352 19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (357)
Q Consensus 19 wvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~ 98 (357)
|++...-.++--++.+|||+|||-|..+..+++.+ .+|+|+|+|+.+|+.|+.+...... .+++.+..+.+...
T Consensus 47 ~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~--- 120 (243)
T COG2227 47 YIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLAS--- 120 (243)
T ss_pred hhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHh---
Confidence 44444433333478999999999996666666666 6999999999999999999877643 34455554433211
Q ss_pred hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCc
Q 018352 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178 (357)
Q Consensus 99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~ 178 (357)
..++||+|+|.-+++| .++.+.+++++.+++||||.++.+|+|.......+ ..
T Consensus 121 ---~~~~FDvV~cmEVlEH----v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~-~i------------------- 173 (243)
T COG2227 121 ---AGGQFDVVTCMEVLEH----VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLL-AI------------------- 173 (243)
T ss_pred ---cCCCccEEEEhhHHHc----cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHH-HH-------------------
Confidence 3479999999997666 45677799999999999999999999964332211 11
Q ss_pred cCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCch
Q 018352 179 IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (357)
Q Consensus 179 i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~ 241 (357)
+|.+|.+.+.-..+....-++.++++...+.+.|+++.....++
T Consensus 174 -------------------~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~ 217 (243)
T COG2227 174 -------------------IGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLT 217 (243)
T ss_pred -------------------HHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceE
Confidence 11122111111122223357899999999999999999988774
No 11
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=1e-16 Score=150.80 Aligned_cols=212 Identities=20% Similarity=0.229 Sum_probs=153.1
Q ss_pred HHHHHHHHc--CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352 20 AKTALIKIY--SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (357)
Q Consensus 20 vks~Li~~~--~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~ 97 (357)
.|-.++.+. +.++++|||||||.|+.+..+++.-..+|+|+++|+++.+.|+++++..+...++++...|... +
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--~-- 134 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--F-- 134 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc--c--
Confidence 344444443 4599999999999999888888776679999999999999999999988777788999888755 2
Q ss_pred hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCC
Q 018352 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPN 177 (357)
Q Consensus 98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn 177 (357)
.+.||-|++...++| + ..+....++++++++|+|||.++..+.....-
T Consensus 135 -----~e~fDrIvSvgmfEh-v-g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~------------------------- 182 (283)
T COG2230 135 -----EEPFDRIVSVGMFEH-V-GKENYDDFFKKVYALLKPGGRMLLHSITGPDQ------------------------- 182 (283)
T ss_pred -----ccccceeeehhhHHH-h-CcccHHHHHHHHHhhcCCCceEEEEEecCCCc-------------------------
Confidence 355999999998888 5 45668899999999999999998774332100
Q ss_pred ccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHHHh
Q 018352 178 CIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMS 257 (357)
Q Consensus 178 ~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~~~ 257 (357)
. +. ..+.|-.+|.|- ..++.+.+.+.+.+++.||.+....+|...|......|...++.
T Consensus 183 ~-----~~--------~~~~~i~~yiFP--------gG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~ 241 (283)
T COG2230 183 E-----FR--------RFPDFIDKYIFP--------GGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEA 241 (283)
T ss_pred c-----cc--------cchHHHHHhCCC--------CCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHH
Confidence 0 00 224466677771 23567888899999999999999999999998877666655543
Q ss_pred cCCCCCCCCCCCChhHHHHHhhheeEEEEec
Q 018352 258 AGPNLIDPRGRLLPRSYDVLGLYSTFIFQKP 288 (357)
Q Consensus 258 ~~~~~~~~~g~l~~~e~e~~~lY~~f~F~K~ 288 (357)
.........+.--.+-|+..-.++...|+.-
T Consensus 242 ~~~~a~~~~~e~~~r~w~~yl~~~~~~Fr~~ 272 (283)
T COG2230 242 NRDEAIALYDERFYRMWELYLAACAAAFRAG 272 (283)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhccC
Confidence 2111111111112245776666666666654
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.70 E-value=2.4e-16 Score=147.75 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=122.4
Q ss_pred HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (357)
Q Consensus 24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~ 103 (357)
+++.+..++.+|||+|||+|..+..++..+ .+|+|+|+|++|++.|+++.+..+...+++++++|+..... ..+
T Consensus 37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~~~ 110 (255)
T PRK11036 37 LLAELPPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----HLE 110 (255)
T ss_pred HHHhcCCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----hcC
Confidence 444444567899999999998888887765 59999999999999999998766544578899999865321 035
Q ss_pred CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCcc
Q 018352 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES 183 (357)
Q Consensus 104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~ 183 (357)
++||+|+|..++|| ++ +...+++++.++|||||+++++..|...+..+. . ..+|-
T Consensus 111 ~~fD~V~~~~vl~~-~~---~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~--~--------------~~~~~----- 165 (255)
T PRK11036 111 TPVDLILFHAVLEW-VA---DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHN--M--------------VAGNF----- 165 (255)
T ss_pred CCCCEEEehhHHHh-hC---CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHH--H--------------HccCh-----
Confidence 78999999999998 43 345789999999999999999988875432111 0 01110
Q ss_pred EEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecC---chHHHHh
Q 018352 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN---LNEFYDD 246 (357)
Q Consensus 184 y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~---f~~f~~~ 246 (357)
+.....++ ...+..+ .+.+.++.+.+.++++++||+++.... |++|..+
T Consensus 166 -----~~~~~~~~-~~~~~~~--------~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~ 217 (255)
T PRK11036 166 -----DYVQAGMP-KRKKRTL--------SPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRN 217 (255)
T ss_pred -----HHHHhcCc-cccccCC--------CCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCc
Confidence 00000000 0000000 123456888999999999999997655 6666644
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.70 E-value=1e-15 Score=144.39 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=117.5
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
+.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... .++.|.++|+...++ ++++||+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i~~~~~D~~~~~~------~~~~FD~ 120 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKDF------PENTFDM 120 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---CceEEEECCcccCCC------CCCCeEE
Confidence 4578899999999998887776554459999999999999999987542 368999999987666 5689999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEe
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f 188 (357)
|++..++++ + +.++...++++++++|||||+|+++.+.....- .......
T Consensus 121 V~s~~~l~h-~-~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~-~~~~~~~--------------------------- 170 (263)
T PTZ00098 121 IYSRDAILH-L-SYADKKKLFEKCYKWLKPNGILLITDYCADKIE-NWDEEFK--------------------------- 170 (263)
T ss_pred EEEhhhHHh-C-CHHHHHHHHHHHHHHcCCCcEEEEEEecccccc-CcHHHHH---------------------------
Confidence 999888776 3 445678999999999999999998854321100 0000000
Q ss_pred ecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhh
Q 018352 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247 (357)
Q Consensus 189 ~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~ 247 (357)
.| +.... ..+.+.+.+.++++++||+.+...+..+++...
T Consensus 171 ------------~~---~~~~~----~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~ 210 (263)
T PTZ00098 171 ------------AY---IKKRK----YTLIPIQEYGDLIKSCNFQNVVAKDISDYWLEL 210 (263)
T ss_pred ------------HH---HHhcC----CCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHH
Confidence 00 00000 024577889999999999999988877777653
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=1.2e-15 Score=142.59 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=92.1
Q ss_pred HHHHcCCCCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (357)
Q Consensus 24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~ 100 (357)
++..+..++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++....+...+++++++|+...++
T Consensus 49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----- 123 (247)
T PRK15451 49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----- 123 (247)
T ss_pred HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----
Confidence 34455678899999999999877776652 4569999999999999999998765444478999999876543
Q ss_pred hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
..+|+|+|.+++|+ + +.++...++++++++|||||.|+++
T Consensus 124 ---~~~D~vv~~~~l~~-l-~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 ---ENASMVVLNFTLQF-L-EPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred ---CCCCEEehhhHHHh-C-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 45999999999998 5 3556788999999999999999987
No 15
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.66 E-value=8.8e-16 Score=132.65 Aligned_cols=117 Identities=22% Similarity=0.338 Sum_probs=93.5
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.+.+|||+|||+|..+..++.. +..+++|+|+|++||+.|+++.+..+.. +++|+++|+.+.+- .+ . ++||+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~~--~-~~~D~ 76 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--EL--E-EKFDI 76 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--CS--S-TTEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--cc--C-CCeeE
Confidence 5689999999999999988843 4679999999999999999998876555 79999999988431 00 2 78999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC-chHHHHHHH
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD-SSTIWAKYQ 157 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd-~~~i~~~~~ 157 (357)
|++..++|+ + .+...+++++.++|++||.+++..+. ...+.+.+.
T Consensus 77 I~~~~~l~~-~---~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~ 122 (152)
T PF13847_consen 77 IISNGVLHH-F---PDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLE 122 (152)
T ss_dssp EEEESTGGG-T---SHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHH
T ss_pred EEEcCchhh-c---cCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHH
Confidence 999998888 4 24568899999999999999999777 344444443
No 16
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.66 E-value=7.9e-16 Score=134.32 Aligned_cols=171 Identities=18% Similarity=0.181 Sum_probs=114.9
Q ss_pred chHHHHHHHHHHHHHHHcCCCC-CEEEEECCCCChhHHHHHHhcCCe-EEEEeCChHHHHHHHHHhHhcCCCceeEEEEc
Q 018352 11 LTHHRLYEFAKTALIKIYSHPY-VTVCDLYCGAGVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEA 88 (357)
Q Consensus 11 ~p~~~~~nwvks~Li~~~~~~~-~~VLDlGCG~G~~l~k~~~~~~~~-v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~ 88 (357)
+...|+-.|.+...-.--+... .+|||||||+|..+.++++.++.. ++|+|.|+.+++.|+...+..+....++|.++
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 4456777887654431112333 499999999999999998887654 99999999999999988877765556999999
Q ss_pred CCCCCchhhhhhhcCCcccEEEEccchhhc----cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHHHHhHHh
Q 018352 89 DPCAENFETQMQEKANQADLVCCFQHLQMC----FETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQKNVEA 162 (357)
Q Consensus 89 D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~----fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~~~~~~~ 162 (357)
|++...+ ..++||+|.--..+.-+ -....++...+..+.+.|+|||+|++|.+|. +++.+.+.+..-.
T Consensus 126 DI~~~~~------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~ 199 (227)
T KOG1271|consen 126 DITDPDF------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFE 199 (227)
T ss_pred eccCCcc------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeE
Confidence 9998765 34667776543322110 1122334568899999999999999999987 6677666543111
Q ss_pred hhcCCCCCCCCCCCCccCCccEEEEe
Q 018352 163 YHNRSSSMKPNLVPNCIRSESYVITF 188 (357)
Q Consensus 163 ~~~~~~~~~~~~fgn~i~~~~y~i~f 188 (357)
++. .-+++.+.||.+.++.+.+|.|
T Consensus 200 ~~~-tvp~ptF~FgG~~G~tvt~vaF 224 (227)
T KOG1271|consen 200 YLS-TVPTPTFMFGGSVGSTVTSVAF 224 (227)
T ss_pred EEE-eeccceEEeccccccEEEEEEE
Confidence 111 1122234555555555555554
No 17
>PLN02244 tocopherol O-methyltransferase
Probab=99.65 E-value=2.4e-15 Score=146.95 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=92.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.+..+...++.|+++|+...++ .+++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~------~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF------EDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC------CCCCccEE
Confidence 457899999999999888877764569999999999999999988766554579999999988776 56899999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
+|..++|+ +. +..+++++++++|||||+|++++..
T Consensus 191 ~s~~~~~h-~~---d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 191 WSMESGEH-MP---DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred EECCchhc-cC---CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99998888 43 3568999999999999999988644
No 18
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.65 E-value=7.5e-16 Score=123.97 Aligned_cols=96 Identities=27% Similarity=0.489 Sum_probs=78.5
Q ss_pred EEEECCCCChhHHHHHHhc----CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 35 VCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 35 VLDlGCG~G~~l~k~~~~~----~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
|||+|||+|..+..+.... ..+++|+|+|++||+.|+++....+. +++|+++|+...+. ..++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence 7999999999888887652 26999999999999999999876433 78999999977443 467999999
Q ss_pred Eccc-hhhccCCHHHHHHHHHHHHhcccCCc
Q 018352 111 CFQH-LQMCFETEERARRLLQNVSSLLKPGG 140 (357)
Q Consensus 111 ~~~~-lh~~fes~~~~~~~L~~i~~~LkpGG 140 (357)
|... +|| + +.++..++++++.++|+|||
T Consensus 73 ~~~~~~~~-~-~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHH-L-SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp E-TTGGGG-S-SHHHHHHHHHHHHHTEEEEE
T ss_pred EcCCccCC-C-CHHHHHHHHHHHHHHhCCCC
Confidence 9655 998 6 78889999999999999998
No 19
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.65 E-value=5.5e-15 Score=140.01 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=118.0
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++++.+|||||||.|+.+..+++....+|+|+.+|++..+.|+++.+..+....+++..+|... + +.+||.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~-------~~~fD~ 130 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--L-------PGKFDR 130 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-SE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--c-------CCCCCE
Confidence 4589999999999999999888884569999999999999999999988776678999998643 2 348999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEe
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f 188 (357)
|++..++.+ + ..+....+++++.++|||||.+++.+.....-.. .. ... .
T Consensus 131 IvSi~~~Eh-v-g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~--~~------~~~---------~----------- 180 (273)
T PF02353_consen 131 IVSIEMFEH-V-GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPY--HA------ERR---------S----------- 180 (273)
T ss_dssp EEEESEGGG-T-CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHH--HH------CTT---------C-----------
T ss_pred EEEEechhh-c-ChhHHHHHHHHHHHhcCCCcEEEEEecccccccc--hh------hcC---------C-----------
Confidence 999986666 2 2466789999999999999999876433321100 00 000 0
Q ss_pred ecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHH
Q 018352 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML 255 (357)
Q Consensus 189 ~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~ 255 (357)
-..|-.+|.| ...++.+...+...+++.||+++...++...|......|...+
T Consensus 181 ------~~~~i~kyiF--------Pgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f 233 (273)
T PF02353_consen 181 ------SSDFIRKYIF--------PGGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENF 233 (273)
T ss_dssp ------CCHHHHHHTS--------TTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHH
T ss_pred ------CceEEEEeeC--------CCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHH
Confidence 0023344544 1125678888999999999999999999999988766665544
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.64 E-value=4.6e-15 Score=137.69 Aligned_cols=113 Identities=21% Similarity=0.233 Sum_probs=93.1
Q ss_pred HHHHcCCCCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (357)
Q Consensus 24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~ 100 (357)
+...+..++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++.+......+++++++|+...++
T Consensus 46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----- 120 (239)
T TIGR00740 46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----- 120 (239)
T ss_pred HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----
Confidence 44555667889999999999888777664 4568999999999999999998765434468999999977554
Q ss_pred hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
..+|+|+|.+++|| + +.++...++++++++|+|||.|+++.
T Consensus 121 ---~~~d~v~~~~~l~~-~-~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 121 ---KNASMVILNFTLQF-L-PPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ---CCCCEEeeecchhh-C-CHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 35899999999999 4 45567899999999999999999884
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.64 E-value=1.6e-15 Score=139.57 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=88.1
Q ss_pred CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++.+.... .+++++.+|+...++ ++++||
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~------~~~~fD 116 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF------DDNSFD 116 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC------CCCCcc
Confidence 46789999999999888877765 346999999999999999998865443 368999999877655 457899
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
+|++.+++|+ +. +..++++++.++|+|||++++..+
T Consensus 117 ~V~~~~~l~~-~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 117 YVTIGFGLRN-VP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EEEEeccccc-CC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999998888 43 345789999999999999987743
No 22
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.64 E-value=7.1e-15 Score=145.69 Aligned_cols=196 Identities=18% Similarity=0.191 Sum_probs=134.1
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
+.++.+|||||||+|+.+..+++....+|+|+|+|+++++.|+++.+.. .+++..+|... + .++||+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~--l-------~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRD--L-------NGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhh--c-------CCCCCE
Confidence 4578899999999999888777665569999999999999999988533 57788888643 1 368999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEe
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f 188 (357)
|++...+++ + .......+++.+.++|||||++++.+...... .
T Consensus 232 Ivs~~~~eh-v-g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~-------------~---------------------- 274 (383)
T PRK11705 232 IVSVGMFEH-V-GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKT-------------D---------------------- 274 (383)
T ss_pred EEEeCchhh-C-ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCC-------------C----------------------
Confidence 999888877 3 34556789999999999999999875432110 0
Q ss_pred ecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhHHHHHHHHHhcCCCCCCCCCC
Q 018352 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGR 268 (357)
Q Consensus 189 ~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~g~ 268 (357)
.....|-.+|.|- ..++.+...+.+.++ .||++....+|...|......|...++.....+...-|.
T Consensus 275 ----~~~~~~i~~yifp--------~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~~~~~ 341 (383)
T PRK11705 275 ----TNVDPWINKYIFP--------NGCLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLMAWHENFEAAWPELADNYSE 341 (383)
T ss_pred ----CCCCCCceeeecC--------CCcCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 0001233455551 124567777777655 699999999999999887666554433211111111232
Q ss_pred CChhHHHHHhhheeEEEEe
Q 018352 269 LLPRSYDVLGLYSTFIFQK 287 (357)
Q Consensus 269 l~~~e~e~~~lY~~f~F~K 287 (357)
--.+.|+..-.|+.-.|+.
T Consensus 342 ~~~r~w~~yl~~~~~~F~~ 360 (383)
T PRK11705 342 RFYRMWRYYLLSCAGAFRA 360 (383)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 2345788777776655544
No 23
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.64 E-value=2.2e-15 Score=129.80 Aligned_cols=100 Identities=26% Similarity=0.429 Sum_probs=79.0
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..++.+|||+|||.|..+..+...+. +|+|+|+|+.+++. . ...+...+...... ..++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~~~------~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------R----NVVFDNFDAQDPPF------PDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------T----TSEEEEEECHTHHC------HSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------h----hhhhhhhhhhhhhc------cccchhh
Confidence 46789999999999988888866666 99999999999987 1 22223332222112 4689999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~ 150 (357)
|+|..++|| +. +...+|++++++|||||++++++++..
T Consensus 82 i~~~~~l~~-~~---d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 82 IICNDVLEH-LP---DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEESSGGG-SS---HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhHHHHhh-cc---cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 999999999 43 588999999999999999999998864
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.64 E-value=4.6e-15 Score=135.94 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=113.9
Q ss_pred EEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352 34 TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 34 ~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
+|||||||+|..+..++.. +..+++|+|+|+++++.|+++.+..+...++.++..|....++ .++||+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~~~ 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVFGF 74 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEeehH
Confidence 7999999999988888765 3468999999999999999998776555678999999866543 3589999999
Q ss_pred cchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeeccc
Q 018352 113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE 192 (357)
Q Consensus 113 ~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~~ 192 (357)
.++|+ +. +...++++++++|||||++++..+..+. +. .
T Consensus 75 ~~l~~-~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----------------------~~--------~------- 112 (224)
T smart00828 75 EVIHH-IK---DKMDLFSNISRHLKDGGHLVLADFIANL-----------------------LS--------A------- 112 (224)
T ss_pred HHHHh-CC---CHHHHHHHHHHHcCCCCEEEEEEccccc-----------------------Cc--------c-------
Confidence 98887 33 3578999999999999999987543210 00 0
Q ss_pred CCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHh
Q 018352 193 EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246 (357)
Q Consensus 193 ~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~ 246 (357)
.+. . ....|+.+.+.+.+++++.||+++...++..-|.+
T Consensus 113 -----~~~--------~--~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 151 (224)
T smart00828 113 -----IEH--------E--ETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN 151 (224)
T ss_pred -----ccc--------c--ccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh
Confidence 000 0 00124567788999999999999999988777755
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=5.1e-15 Score=133.78 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=86.0
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|+++.+..+. .++++..+|+...++ .++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~-------~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF-------DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc-------CCCcCEEE
Confidence 56799999999998888777665 4999999999999999998776543 247888899866443 35799999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|..++|+ + +.+....+++++.++|+|||++++.
T Consensus 101 ~~~~~~~-~-~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 101 STVVLMF-L-EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred Eecchhh-C-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999987 4 5667889999999999999997654
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=2e-14 Score=139.34 Aligned_cols=105 Identities=19% Similarity=0.095 Sum_probs=84.3
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||||||+|..+..++..+...|+|+|+|+.++.+++...+..+...++.|+.+|+...++ .++||+|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEEE
Confidence 57899999999999888888877778999999999998765543322112368999999866543 47899999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|..++|| . .+...++++++++|+|||.|++.+
T Consensus 195 s~~vl~H-~---~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLYH-R---RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhhc-c---CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999888 3 246678999999999999999874
No 27
>PRK05785 hypothetical protein; Provisional
Probab=99.61 E-value=3.8e-15 Score=137.55 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=79.5
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..++.+|||+|||+|..+..+......+|+|+|+|++||+.|+++. .++++|+...++ ++++||+
T Consensus 49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~------~d~sfD~ 113 (226)
T PRK05785 49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPF------RDKSFDV 113 (226)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCC------CCCCEEE
Confidence 3457899999999997777766553359999999999999997642 357888887776 5789999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCc-EEEEEeCCc
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDS 149 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG-~fi~t~pd~ 149 (357)
|+|.+++|+ +. +..+++++++++|||.+ .+-+..|+.
T Consensus 114 v~~~~~l~~-~~---d~~~~l~e~~RvLkp~~~ile~~~p~~ 151 (226)
T PRK05785 114 VMSSFALHA-SD---NIEKVIAEFTRVSRKQVGFIAMGKPDN 151 (226)
T ss_pred EEecChhhc-cC---CHHHHHHHHHHHhcCceEEEEeCCCCc
Confidence 999999998 53 46678999999999954 333335554
No 28
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.58 E-value=2.7e-14 Score=128.90 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=83.5
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.++++....+. ++.+..+|+...++ .++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL-------NEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc-------cCCCCEEE
Confidence 45799999999998888777665 4999999999999999988766543 46777788754333 35799999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|..++|+ + +.+....+++++.++|+|||++++.
T Consensus 100 ~~~~~~~-~-~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 100 STVVFMF-L-QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred Eeccccc-C-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9999987 4 4567889999999999999996654
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.58 E-value=9.2e-14 Score=141.46 Aligned_cols=159 Identities=20% Similarity=0.220 Sum_probs=115.5
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++.+|||||||+|..+..++.....+++|+|+|+.|++.|+++.... ..++.|.++|+...++ ++++||+|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~------~~~~fD~I 336 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTY------PDNSFDVI 336 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCC------CCCCEEEE
Confidence 467899999999998887776654568999999999999998876543 2368999999987665 45789999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEee
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFE 189 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~ 189 (357)
+|..+++| +. +...++++++++|||||.++++.+..... . ...
T Consensus 337 ~s~~~l~h-~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~---------------~-------~~~----------- 379 (475)
T PLN02336 337 YSRDTILH-IQ---DKPALFRSFFKWLKPGGKVLISDYCRSPG---------------T-------PSP----------- 379 (475)
T ss_pred EECCcccc-cC---CHHHHHHHHHHHcCCCeEEEEEEeccCCC---------------C-------CcH-----------
Confidence 99998888 32 45688999999999999999885432100 0 000
Q ss_pred cccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCchHHHHhhH
Q 018352 190 VEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248 (357)
Q Consensus 190 ~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~~f~~~~~ 248 (357)
.+. .| +.... -.+.+.+.+.++++++||+.+...++++-|....
T Consensus 380 -------~~~-~~---~~~~g----~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~~~ 423 (475)
T PLN02336 380 -------EFA-EY---IKQRG----YDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQVL 423 (475)
T ss_pred -------HHH-HH---HHhcC----CCCCCHHHHHHHHHHCCCeeeeeecchHHHHHHH
Confidence 000 00 00000 0234667899999999999999888877776543
No 30
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.58 E-value=2.3e-14 Score=133.83 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=85.7
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
+..+|||+|||+|..+..+... ..+++|+|+|+.|++.|+++.. ...++++|+...++ .+++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPL------ATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcC------CCCcEEEEE
Confidence 4679999999999877777554 4699999999999999988753 24678999877665 467899999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~ 151 (357)
+..++|| +. +...++.++.++|+|||+|+++++....
T Consensus 109 s~~~l~~-~~---d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 109 SNLAVQW-CG---NLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred ECchhhh-cC---CHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 9999998 32 4678899999999999999999877644
No 31
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.57 E-value=6.9e-14 Score=124.35 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=118.1
Q ss_pred HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (357)
Q Consensus 23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~ 102 (357)
.+|...++++.+|||||||.|..+..+........+|+|++++.+..|.++ -+.++++|+... +. .+ +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~g-L~-~f--~ 72 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEG-LA-DF--P 72 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHh-Hh-hC--C
Confidence 456777899999999999999777777666777999999999999988776 456799998652 21 11 5
Q ss_pred CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCc
Q 018352 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE 182 (357)
Q Consensus 103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~ 182 (357)
+++||.|+++.+++. ...+..+|+++ |+-|...|+++||.-....|++=.. +|..
T Consensus 73 d~sFD~VIlsqtLQ~----~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~-----~Grm------------- 127 (193)
T PF07021_consen 73 DQSFDYVILSQTLQA----VRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLL-----RGRM------------- 127 (193)
T ss_pred CCCccEEehHhHHHh----HhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHh-----cCCC-------------
Confidence 799999999998887 34567777776 4558899999999876655553110 1110
Q ss_pred cEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCch
Q 018352 183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (357)
Q Consensus 183 ~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f~ 241 (357)
+. .+.+ .|.|+ + . .+-.+.+...|+++|++.|+++++...+.
T Consensus 128 ------Pv-t~~l-----Py~WY--d-T--PNih~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 128 ------PV-TKAL-----PYEWY--D-T--PNIHLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred ------CC-CCCC-----CCccc--C-C--CCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 00 0111 25553 1 1 12247788899999999999999987664
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=2.2e-14 Score=134.48 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=85.2
Q ss_pred HHHHHcC-CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352 23 ALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (357)
Q Consensus 23 ~Li~~~~-~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~ 100 (357)
.++..+. .++.+|||||||+|..+..+... +..+|+|+|+|+.|++.|+++ +++|+++|+....
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~------ 85 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK------ 85 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC------
Confidence 3444443 36789999999999887777665 356899999999999999653 4678999986432
Q ss_pred hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
..++||+|+|+.++|| +. +...++++++++|||||++++++++
T Consensus 86 -~~~~fD~v~~~~~l~~-~~---d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 86 -PKPDTDVVVSNAALQW-VP---EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred -CCCCceEEEEehhhhh-CC---CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 2478999999999999 43 3567899999999999999998765
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.56 E-value=7e-16 Score=123.40 Aligned_cols=98 Identities=27% Similarity=0.327 Sum_probs=62.2
Q ss_pred EEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccc
Q 018352 36 CDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH 114 (357)
Q Consensus 36 LDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~ 114 (357)
||+|||+|..+..+... +..+|+|+|+|+.|++.|++++...... .......+....... ...++||+|++..+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDY----DPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---C----CC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhc----ccccccceehhhhh
Confidence 79999999888888776 5669999999999999999888765321 223333333221110 01259999999999
Q ss_pred hhhccCCHHHHHHHHHHHHhcccCCcEE
Q 018352 115 LQMCFETEERARRLLQNVSSLLKPGGYF 142 (357)
Q Consensus 115 lh~~fes~~~~~~~L~~i~~~LkpGG~f 142 (357)
+||+ ++.+.++++++++|+|||+|
T Consensus 76 l~~l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHL----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS------S-HHHHHHHHTTT-TSS-EE
T ss_pred Hhhh----hhHHHHHHHHHHHcCCCCCC
Confidence 9993 56779999999999999986
No 34
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.56 E-value=3.2e-13 Score=123.61 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=82.3
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||+|||+|..+..++... .+++|+|+|++|++.|+++........++.|.++|+... .++||+|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCcCEEE
Confidence 57899999999998888776654 499999999999999999987654334689999998652 26899999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEE
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~ 144 (357)
+..++++ + +.+....+++++.+++++++++.+
T Consensus 125 ~~~~l~~-~-~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIH-Y-PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHh-C-CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9988877 5 456678899999999987655543
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=2.9e-14 Score=133.55 Aligned_cols=103 Identities=29% Similarity=0.368 Sum_probs=85.1
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++.. ++.|+.+|+.... ...+||+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------~~~~~~~d~~~~~-------~~~~fD~ 96 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------DCQFVEADIASWQ-------PPQALDL 96 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------CCeEEECchhccC-------CCCCccE
Confidence 46789999999999888777665 45799999999999999988753 4788999986532 2468999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|+|..++|+ +. +...+++++.++|||||+|++++|+.
T Consensus 97 v~~~~~l~~-~~---d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 97 IFANASLQW-LP---DHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred EEEccChhh-CC---CHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 999999998 43 35678999999999999999987764
No 36
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.54 E-value=2e-14 Score=132.40 Aligned_cols=170 Identities=18% Similarity=0.246 Sum_probs=118.0
Q ss_pred HHHHHHHHHHc--CCC------CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-----CCCceeE
Q 018352 18 EFAKTALIKIY--SHP------YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----RKNFIAE 84 (357)
Q Consensus 18 nwvks~Li~~~--~~~------~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-----~~~~~v~ 84 (357)
.|+...+.++. ..| +.+|||+|||+|-....+++.+ +.|+|||+++.||+.|++..... +..++++
T Consensus 68 ~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~ 146 (282)
T KOG1270|consen 68 PFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE 146 (282)
T ss_pred hHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeee
Confidence 45556665554 223 4789999999997777777766 59999999999999999984322 2234566
Q ss_pred EEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhh
Q 018352 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH 164 (357)
Q Consensus 85 f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~ 164 (357)
|.+.|+.. ..++||+|+|.-+++| .++++.+++.+.++|||||.+++++.|...+..
T Consensus 147 ~~~~~~E~---------~~~~fDaVvcsevleH----V~dp~~~l~~l~~~lkP~G~lfittinrt~lS~---------- 203 (282)
T KOG1270|consen 147 YEDTDVEG---------LTGKFDAVVCSEVLEH----VKDPQEFLNCLSALLKPNGRLFITTINRTILSF---------- 203 (282)
T ss_pred hhhcchhh---------cccccceeeeHHHHHH----HhCHHHHHHHHHHHhCCCCceEeeehhhhHHHh----------
Confidence 66666644 2356999999997776 677899999999999999999999888643311
Q ss_pred cCCCCCCCCCCCCccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352 165 NRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (357)
Q Consensus 165 ~~~~~~~~~~fgn~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f 240 (357)
+++ | |...|...+.--.+..+|-++.+..+..+..+.|+.+.....+
T Consensus 204 ----------~~~--------i-----------~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 204 ----------AGT--------I-----------FLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGE 250 (282)
T ss_pred ----------hcc--------c-----------cHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhcc
Confidence 111 1 1111111111112334567889999999999988888776654
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.53 E-value=2e-13 Score=122.43 Aligned_cols=115 Identities=19% Similarity=0.124 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (357)
Q Consensus 18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~ 96 (357)
..+.+..+..+++++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++.+..+.. +++|+++|+.....
T Consensus 32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~- 109 (187)
T PRK00107 32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ- 109 (187)
T ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-
Confidence 44556667777778899999999999877777653 5679999999999999999998877553 48999999866332
Q ss_pred hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
.++||+|+|.. + .....+++.++++|||||+|++..+.
T Consensus 110 ------~~~fDlV~~~~-----~---~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 110 ------EEKFDVVTSRA-----V---ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ------CCCccEEEEcc-----c---cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 46899999864 2 13567899999999999999988544
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=7.6e-14 Score=133.26 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=86.6
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|+++.+..+. ++.+...|+....+ +++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-------~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-------QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-------cCCccEEE
Confidence 34599999999999888887765 5999999999999999998876644 67888888765433 47899999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+..++|+ + +.++...+++++.++|+|||++++..
T Consensus 190 ~~~vl~~-l-~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 190 STVVLMF-L-NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred Ecchhhh-C-CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999988 4 56678899999999999999977653
No 39
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.53 E-value=8.7e-13 Score=126.84 Aligned_cols=113 Identities=20% Similarity=0.183 Sum_probs=83.5
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-chhhhhhhcCCc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-~~~~~l~~~~~~ 105 (357)
++++.+|||+|||+|..+..++.+. ..+|+|+|+|++||+.|+++........++.++++|.... .+.... ....
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~ 138 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGR 138 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCC
Confidence 4567899999999999888887763 4689999999999999999876533334678899998752 221100 0012
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
..++++...+++ | +.+++.++|++++++|+|||.|++.
T Consensus 139 ~~~~~~gs~~~~-~-~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 139 RLGFFPGSTIGN-F-TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred eEEEEecccccC-C-CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 334444456777 6 5777899999999999999999865
No 40
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.53 E-value=9.5e-14 Score=131.13 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCEEEEECCCCChhHH----HHHHh-c-----CCeEEEEeCChHHHHHHHHHhHh-----
Q 018352 13 HHRLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVD----KWETA-L-----IANYIGIDVATSGIGEARDTWEN----- 76 (357)
Q Consensus 13 ~~~~~nwvks~Li~~~-~~~~~~VLDlGCG~G~~l~----k~~~~-~-----~~~v~GiDiS~~~l~~A~~r~~~----- 76 (357)
...+.+++...++... ..++.+|+|+|||+|.... .+... + ..+|+|+|+|+.||+.|++..-.
T Consensus 80 ~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~ 159 (264)
T smart00138 80 FEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELE 159 (264)
T ss_pred HHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHh
Confidence 3334555555555432 2245799999999996432 22222 1 34899999999999999885310
Q ss_pred -c--------------------CCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhc
Q 018352 77 -Q--------------------RKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135 (357)
Q Consensus 77 -~--------------------~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~ 135 (357)
. ....++.|.++|+...+. +.++||+|+|.+++|| | +.+...+++++++++
T Consensus 160 ~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~y-f-~~~~~~~~l~~l~~~ 231 (264)
T smart00138 160 DLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIY-F-DEPTQRKLLNRFAEA 231 (264)
T ss_pred cCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHh-C-CHHHHHHHHHHHHHH
Confidence 0 011258899999987654 4578999999999999 7 566788999999999
Q ss_pred ccCCcEEEEE
Q 018352 136 LKPGGYFLGI 145 (357)
Q Consensus 136 LkpGG~fi~t 145 (357)
|+|||++++.
T Consensus 232 L~pGG~L~lg 241 (264)
T smart00138 232 LKPGGYLFLG 241 (264)
T ss_pred hCCCeEEEEE
Confidence 9999999875
No 41
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.53 E-value=9.6e-14 Score=135.03 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=85.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+|||||||+|..+..+++. +..+|+|+|+|++|++.|+++.... +++++.+|+...++ .+++||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp~------~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLPF------PTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCCC------CCCceeE
Confidence 36789999999999877777654 4468999999999999999876533 57889999877665 4578999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|++..++|+ +.+ ..+++++++++|||||+++++.+
T Consensus 182 VIs~~~L~~-~~d---~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 182 YVSAGSIEY-WPD---PQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred EEEcChhhh-CCC---HHHHHHHHHHhcCCCcEEEEEEe
Confidence 999999998 543 34689999999999999987643
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.53 E-value=1.4e-13 Score=125.07 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=90.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCcee
Q 018352 5 PIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIA 83 (357)
Q Consensus 5 ~~~r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v 83 (357)
+.++.+.......+++...+ . .++++.+|||+|||+|..+..+... +..+++|+|+|++|++.|+++.. ++
T Consensus 19 ~rn~~~~~~~~~~~~~~~~l-~-~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~ 90 (204)
T TIGR03587 19 DRNSRQSLVAAKLAMFARAL-N-RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NI 90 (204)
T ss_pred hccccHHHHHHHHHHHHHHH-H-hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CC
Confidence 34444444444334444433 2 2456789999999999888877665 56799999999999999988653 35
Q ss_pred EEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 84 ~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.+.++|+.. ++ .+++||+|+|..++|| + +.+...++++++.+++ ++++++.
T Consensus 91 ~~~~~d~~~-~~------~~~sfD~V~~~~vL~h-l-~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 91 NIIQGSLFD-PF------KDNFFDLVLTKGVLIH-I-NPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred cEEEeeccC-CC------CCCCEEEEEECChhhh-C-CHHHHHHHHHHHHhhc--CcEEEEE
Confidence 678888876 44 4689999999999988 4 5677889999999998 4566665
No 43
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.51 E-value=1e-13 Score=124.27 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=83.8
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
+..++||||||.|+++..++..+. .|+++|+|+.+|+.+++..+..+. +++..+.|+....+ ++.||+|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~-------~~~yD~I~ 99 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDF-------PEEYDFIV 99 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS--------TTTEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccc-------cCCcCEEE
Confidence 567999999999999999988888 899999999999999887766543 58889999877555 36899999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+..+++| + ..+...++++++.+.++|||++++.
T Consensus 100 st~v~~f-L-~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMF-L-QRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGG-S--GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEecc-C-CHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 9888887 4 4667888999999999999998875
No 44
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.51 E-value=1.2e-13 Score=125.43 Aligned_cols=123 Identities=17% Similarity=0.084 Sum_probs=91.1
Q ss_pred HcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCC-CCCchhhhhhhcCC
Q 018352 27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKAN 104 (357)
Q Consensus 27 ~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~-~~~~~~~~l~~~~~ 104 (357)
.+..++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++....+. .++.|+++|+ ...+ ..+ ..+
T Consensus 36 ~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~--~~~ 110 (202)
T PRK00121 36 LFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMF--PDG 110 (202)
T ss_pred HcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHc--Ccc
Confidence 33446789999999999888877665 456899999999999999998876543 3689999998 3322 111 357
Q ss_pred cccEEEEccchhhccC-C---HHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352 105 QADLVCCFQHLQMCFE-T---EERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fe-s---~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~ 154 (357)
+||+|++.+..++... + ......++++++++|||||+|++++++...+..
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~ 164 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEY 164 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence 8999999876544110 0 011467899999999999999999888765443
No 45
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=1.8e-13 Score=131.93 Aligned_cols=106 Identities=15% Similarity=0.008 Sum_probs=81.4
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||+|||+|..+..++..+...|+|+|+|+.|+.+++...+......++.+..+++...+. ..+||+|+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~FD~V~ 193 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAFDTVF 193 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCcCEEE
Confidence 57899999999998887777777778999999999998764432211112257777777655432 35799999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|..+++| . .+...+|++++++|||||.|++.+.
T Consensus 194 s~gvL~H-~---~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 194 SMGVLYH-R---KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred Ecchhhc-c---CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9998888 3 3456789999999999999998754
No 46
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.50 E-value=2.3e-13 Score=124.74 Aligned_cols=107 Identities=21% Similarity=0.321 Sum_probs=88.4
Q ss_pred CCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
...+|||+|||+|..+..++... ..+++|+|+|+.+++.++++... ++.++.+|+...++ .+++||+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~------~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NVQFICGDAEKLPL------EDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CCeEEecchhhCCC------CCCceeEE
Confidence 34689999999998888777663 45799999999999999887652 57889999877655 45789999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i 152 (357)
++..++|+ + .+...+++++.++|+|||.+++.++....+
T Consensus 103 i~~~~l~~-~---~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 103 VSNLALQW-C---DDLSQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred EEhhhhhh-c---cCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 99999998 3 246679999999999999999998776544
No 47
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=122.20 Aligned_cols=102 Identities=24% Similarity=0.269 Sum_probs=85.4
Q ss_pred CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeE-EEEcCCCCCc-hhhhhhhcCCcccEEE
Q 018352 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE-FFEADPCAEN-FETQMQEKANQADLVC 110 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~-f~~~D~~~~~-~~~~l~~~~~~FDlV~ 110 (357)
..||++|||+|.....+-..+..+|+++|.++.|-+.|.++++++... +++ |++++..+.+ + .++++|+|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l------~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQL------ADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCccc------ccCCeeeEE
Confidence 457999999997766554457889999999999999999998876433 455 9999998765 4 579999999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|.+++ .+.+++.+.|+|+.++|||||++++.
T Consensus 151 ~TlvL----CSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 151 CTLVL----CSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEE----eccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99954 45678899999999999999999988
No 48
>PRK06202 hypothetical protein; Provisional
Probab=99.49 E-value=6.2e-13 Score=122.88 Aligned_cols=104 Identities=18% Similarity=0.129 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCChhHHHHHHh----c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~----~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
++.+|||+|||+|..+..++.. + ..+|+|+|+|+.|++.|+++.... ++.+.+.++...+. .+++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~------~~~~ 129 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVA------EGER 129 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccc------cCCC
Confidence 5679999999999876665432 2 248999999999999998886543 35566665544333 3578
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
||+|+|++++|| +. .++..++++++.++++ |.+++....
T Consensus 130 fD~V~~~~~lhh-~~-d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 130 FDVVTSNHFLHH-LD-DAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred ccEEEECCeeec-CC-hHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 999999999999 54 3456789999999998 444444333
No 49
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.48 E-value=4.3e-13 Score=127.04 Aligned_cols=101 Identities=19% Similarity=0.330 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCChhHHHHHHh-c---CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-L---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~---~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
...+|||+|||+|..+..+... + ...++|+|+|+.|++.|+++.. ++.|.++|+...++ .+++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~------~~~~~~~d~~~lp~------~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP------QVTFCVASSHRLPF------ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC------CCeEEEeecccCCC------cCCce
Confidence 5578999999999877776654 2 2379999999999999987752 57889999887766 56899
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~ 154 (357)
|+|++.++- ..++++.++|||||+|+..+|+...++.
T Consensus 153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e 189 (272)
T PRK11088 153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE 189 (272)
T ss_pred eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence 999986631 2357889999999999999999876654
No 50
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.48 E-value=1.7e-12 Score=107.03 Aligned_cols=105 Identities=13% Similarity=0.037 Sum_probs=81.7
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
..++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.|+++.+..+.. +++++..|+..... . ...+||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~--~---~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE--D---SLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh--h---hcCCCC
Confidence 345789999999999998888776 4479999999999999999887765332 57888888753211 0 235899
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+|++....+ ...++++++.+.|+|||+|+++.
T Consensus 91 ~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 91 RVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 999866332 24588999999999999999875
No 51
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.47 E-value=9e-13 Score=120.65 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=84.2
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-----------CCCceeEEEEcCCCCCchhhh
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ 98 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-----------~~~~~v~f~~~D~~~~~~~~~ 98 (357)
+++.+|||+|||.|.++..++..+. +|+|+|+|+.+|+.|.+..... ....+++++++|+...+..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-- 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA-- 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence 4678999999999999998887766 8999999999999864422100 0123689999999875431
Q ss_pred hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
..+.||.|+...++|+ + +.+....+++.+.++|||||++++.
T Consensus 110 ---~~~~fD~i~D~~~~~~-l-~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 ---DLGPVDAVYDRAALIA-L-PEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ---cCCCcCEEEechhhcc-C-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1357999998888876 5 6777888999999999999986655
No 52
>PRK06922 hypothetical protein; Provisional
Probab=99.46 E-value=4.2e-13 Score=138.58 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=87.9
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc--hhhhhhhcCCccc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQAD 107 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~--~~~~l~~~~~~FD 107 (357)
++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+ .++.++++|+...+ + ++++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f------edeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF------EKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc------CCCCEE
Confidence 5789999999999877777654 56799999999999999998865442 26788899986644 3 457899
Q ss_pred EEEEccchhhccC---------CHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 108 LVCCFQHLQMCFE---------TEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 108 lV~~~~~lh~~fe---------s~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+|++.+++|+++. +.++..++++++.++|||||++++..
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999999997542 24678899999999999999999873
No 53
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.46 E-value=4.5e-13 Score=126.65 Aligned_cols=105 Identities=24% Similarity=0.260 Sum_probs=84.7
Q ss_pred CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++.+|||+|||+|..+..++.. ...+|+|+|+|+.|++.|+++....... ++.|..+|+...++ .+++||
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~------~~~~fD 148 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPV------ADNSVD 148 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCC------CCCcee
Confidence 46889999999999766655443 2347999999999999999987665432 68899999877555 457899
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|++..++|+ .. +...+++++.++|||||+|++.
T Consensus 149 ~Vi~~~v~~~-~~---d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 149 VIISNCVINL-SP---DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEEcCcccC-CC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 9999998887 32 3457899999999999999986
No 54
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.46 E-value=7.2e-12 Score=120.98 Aligned_cols=105 Identities=21% Similarity=0.333 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC----CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
++.+|||+|||+|..+..+...+ .+|+|+|+|+.||+.|+++++... ...++.|.++|+.. + +++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~--l-------~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES--L-------SGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh--c-------CCCc
Confidence 56899999999998888877664 589999999999999999986531 12357888888643 2 4789
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
|+|+|..++|| + ..+....+++.+.+ +.+||.++...|+
T Consensus 214 D~Vv~~~vL~H-~-p~~~~~~ll~~l~~-l~~g~liIs~~p~ 252 (315)
T PLN02585 214 DTVTCLDVLIH-Y-PQDKADGMIAHLAS-LAEKRLIISFAPK 252 (315)
T ss_pred CEEEEcCEEEe-c-CHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence 99999998766 3 33455677888875 4667776655554
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.46 E-value=7.2e-12 Score=114.93 Aligned_cols=99 Identities=20% Similarity=0.202 Sum_probs=78.2
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|++++.......++.|..+|... ..++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEE
Confidence 4578999999999988888876654 7999999999999999988765433468899998421 24789999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCc
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGG 140 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG 140 (357)
+|..++|+ + +.+....+++++.+.+++++
T Consensus 132 ~~~~~l~~-~-~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 132 VCLDVLIH-Y-PQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred EEcchhhc-C-CHHHHHHHHHHHHhhcCCeE
Confidence 99999876 4 45567889999998775443
No 56
>PLN03075 nicotianamine synthase; Provisional
Probab=99.45 E-value=1.2e-12 Score=124.63 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=87.2
Q ss_pred CCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHh-cCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~-~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
+..+|+|||||.|+.+..++.+ +.++++|+|+++++++.|++.++. .+...+++|.++|+.+..- ..+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~------~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE------SLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc------ccCCc
Confidence 6689999999998666555442 556899999999999999999854 4444579999999976321 23689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|+|+|. ++|| | +.++..++++++++.|+|||++++-+.
T Consensus 197 DlVF~~-ALi~-~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 197 DVVFLA-ALVG-M-DKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CEEEEe-cccc-c-ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999999 9999 5 345678899999999999999998763
No 57
>PRK08317 hypothetical protein; Provisional
Probab=99.45 E-value=1.5e-12 Score=119.06 Aligned_cols=109 Identities=25% Similarity=0.327 Sum_probs=88.2
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
+.++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.... ..++.+..+|+...++ ..++|
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~~~~ 88 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF------PDGSF 88 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC------CCCCc
Confidence 356789999999999888877665 3569999999999999998883322 2368899999876555 45789
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|+|++..++++ + .+...+++++.++|+|||++++..++.
T Consensus 89 D~v~~~~~~~~-~---~~~~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 89 DAVRSDRVLQH-L---EDPARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred eEEEEechhhc-c---CCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 99999998887 3 246678999999999999999887653
No 58
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.45 E-value=2.4e-12 Score=113.59 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCC-eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~-~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
+..+|||+|||+|.....++..... +++++|+|+.+++.|++..+.++... ++++..|+... + ..++||+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~------~~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-L------PDGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-C------CTTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-c------cccceeEE
Confidence 5789999999999777777666443 79999999999999999998876543 89999998653 2 35899999
Q ss_pred EEccchhhccC-CHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 110 CCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 110 ~~~~~lh~~fe-s~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
+|+-.+|.... ..+..+++++.+.+.|+|||.|++.....
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 99987776331 23457899999999999999997765443
No 59
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.44 E-value=1.3e-12 Score=119.97 Aligned_cols=105 Identities=25% Similarity=0.322 Sum_probs=86.6
Q ss_pred CCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++.+|||+|||+|..+..++... ..+++|+|+++.+++.|+++........++.+..+|+....+ ..+.||+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~ 124 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSFDA 124 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCccE
Confidence 56899999999998888887765 479999999999999999988654333468899999877554 3578999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|++.+++|+ +. +...+++++.++|+|||++++.
T Consensus 125 I~~~~~l~~-~~---~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 125 VTIAFGLRN-VP---DIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EEEeccccc-CC---CHHHHHHHHHHhccCCcEEEEE
Confidence 999998887 32 4667899999999999998875
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.44 E-value=3.2e-12 Score=117.89 Aligned_cols=107 Identities=22% Similarity=0.283 Sum_probs=83.9
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||||||+|..+..+.+.+ .+++|+|+++.+++.|+++...... .+.+..+|...... ...++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA-----EHPGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh-----hcCCCccEEE
Confidence 67899999999998777776654 5899999999999999988765432 56777777654321 1247899999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|...+++ . .+...+++++.+.|+|||+++++.++.
T Consensus 120 ~~~~l~~-~---~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 120 CMEMLEH-V---PDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred EhhHhhc-c---CCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 9887777 3 245678999999999999999987764
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.44 E-value=2.6e-12 Score=114.76 Aligned_cols=101 Identities=22% Similarity=0.174 Sum_probs=79.7
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.++++.+..+.. +++++++|+.... ..++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-------~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-------HEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-------ccCCccEE
Confidence 3789999999999777766554 3468999999999999999887766443 5899999986632 24789999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
+|.. +++ ...+++.+.++|+|||++++...
T Consensus 114 ~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 114 TSRA-LAS-------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred Eehh-hhC-------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 9865 443 34578888999999999998754
No 62
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.44 E-value=3.6e-12 Score=116.57 Aligned_cols=122 Identities=21% Similarity=0.264 Sum_probs=90.7
Q ss_pred HHHHHHHHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352 18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (357)
Q Consensus 18 nwvks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~ 96 (357)
.|++..+...- ...+.+|||+|||+|..+..+++.. .+++|+|+|+.+++.++++....... ++.+...|+......
T Consensus 31 ~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 108 (224)
T TIGR01983 31 DYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK 108 (224)
T ss_pred HHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC
Confidence 56665554320 1247899999999998777776654 47999999999999999987654321 477888886543321
Q ss_pred hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (357)
Q Consensus 97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~ 150 (357)
..++||+|++...+|+ .. +...+++++.++|+|||.+++.+++..
T Consensus 109 -----~~~~~D~i~~~~~l~~-~~---~~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 109 -----GAKSFDVVTCMEVLEH-VP---DPQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred -----CCCCccEEEehhHHHh-CC---CHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 1378999999998887 33 456789999999999999998877653
No 63
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.43 E-value=8.2e-13 Score=117.81 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
...++||+|||.|.++..++. ...+++++|+|+.+|+.|++|.... .+++|.++|+.... +.++||+|+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~-rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~-------P~~~FDLIV 111 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAP-RCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFW-------PEGRFDLIV 111 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGG-GEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----------SS-EEEEE
T ss_pred ccceeEecCCCccHHHHHHHH-hhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCC-------CCCCeeEEE
Confidence 457999999999987777644 4569999999999999999999764 27999999986632 468999999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
+...++| +...++.+.++.++...|+|||.+++.+.
T Consensus 112 ~SEVlYY-L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 112 LSEVLYY-LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EES-GGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EehHhHc-CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999999 76778899999999999999999987643
No 64
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.43 E-value=4.2e-13 Score=110.11 Aligned_cols=113 Identities=22% Similarity=0.214 Sum_probs=86.7
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
+.+|||+|||+|..+...++....+++|+|+++.+++.|+.+++......+++++++|..... ..+ ..++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~--~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPL--PDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTC--TTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhc--cCceeEEEEE
Confidence 468999999999888888777767999999999999999999988766567999999975532 111 4589999999
Q ss_pred ccchhhccCCH----HHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 112 FQHLQMCFETE----ERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 112 ~~~lh~~fes~----~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
+-.++...... .....+++.+.++|+|||.+++.+|+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 87655421111 23568999999999999999998774
No 65
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.43 E-value=5e-12 Score=113.71 Aligned_cols=159 Identities=15% Similarity=0.167 Sum_probs=103.9
Q ss_pred HHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC--chhhhhhhcC
Q 018352 26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA 103 (357)
Q Consensus 26 ~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~--~~~~~l~~~~ 103 (357)
..+++++.+|||+|||+|..+..+.......++|+|+|+++++.|+++ +++++++|+... .+ .+
T Consensus 8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~------~~ 73 (194)
T TIGR02081 8 LNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF------PD 73 (194)
T ss_pred HHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc------CC
Confidence 344567889999999999887777665555789999999999988642 357788887541 12 35
Q ss_pred CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCcc
Q 018352 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES 183 (357)
Q Consensus 104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~ 183 (357)
++||+|+|..++|+ +. +...+++++.+.+ |..++++|+......+.. ...++. .+
T Consensus 74 ~sfD~Vi~~~~l~~-~~---d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~-----~~~~~~------~~------- 128 (194)
T TIGR02081 74 KSFDYVILSQTLQA-TR---NPEEILDEMLRVG---RHAIVSFPNFGYWRVRWS-----ILTKGR------MP------- 128 (194)
T ss_pred CCcCEEEEhhHhHc-Cc---CHHHHHHHHHHhC---CeEEEEcCChhHHHHHHH-----HHhCCc------cc-------
Confidence 78999999999998 43 3556788877664 456777787543322211 000100 00
Q ss_pred EEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (357)
Q Consensus 184 y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f 240 (357)
+. ..+ .|.+. ... ...+.+.+.+.++++++||++++...+
T Consensus 129 ----~~---~~~-----~~~~~-~~~----~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 129 ----VT---GEL-----PYDWY-NTP----NIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred ----cC---CCC-----Ccccc-CCC----CcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 00 000 02221 111 124668899999999999999998766
No 66
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=2.8e-12 Score=116.51 Aligned_cols=103 Identities=24% Similarity=0.305 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCChhHHHHHHhcC--CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~--~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++.+|||+|||+|..+..++.... .+++|+|+++.+++.++++.. ...++.+..+|+...++ ..++||+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~------~~~~~D~ 109 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF------EDNSFDA 109 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC------CCCcEEE
Confidence 678999999999998888877654 489999999999999998875 12367899999877554 3578999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|++.+++|+ + .+...+++++.+.|+|||++++..
T Consensus 110 i~~~~~~~~-~---~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 110 VTIAFGLRN-V---TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEEeeeeCC-c---ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 999998887 3 346789999999999999998763
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.41 E-value=4.2e-12 Score=112.73 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=86.7
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||+|||+|..+..+...+. +++|+|+|+.|++.|+++.+..+. +++++.+|+.... .++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--------RGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--------CCcccEEE
Confidence 457899999999988887776655 899999999999999998876543 6788999976522 35899999
Q ss_pred EccchhhccC-----------------CHHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHH
Q 018352 111 CFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKY 156 (357)
Q Consensus 111 ~~~~lh~~fe-----------------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~ 156 (357)
++..+|..-. .....+.+++++.++|+|||.+++..+.. ..+...+
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l 153 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKL 153 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHH
Confidence 9876654210 11225678999999999999998875443 3444444
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.41 E-value=2.9e-12 Score=122.47 Aligned_cols=109 Identities=19% Similarity=0.152 Sum_probs=84.6
Q ss_pred HHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352 25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (357)
Q Consensus 25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~ 104 (357)
+..+..++.+|||+|||+|..+..+++.+..+++|+|+|+.+++.|+++...++....+.+...|... . ..+
T Consensus 153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~------~~~ 224 (288)
T TIGR00406 153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P------IEG 224 (288)
T ss_pred HHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c------cCC
Confidence 44556678999999999998877776667779999999999999999998876554456666665321 1 246
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
+||+|+++...+ ....++.++.++|||||+++++..-
T Consensus 225 ~fDlVvan~~~~-------~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 225 KADVIVANILAE-------VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CceEEEEecCHH-------HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 899999876332 3567899999999999999988554
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.40 E-value=7e-12 Score=123.68 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=85.6
Q ss_pred CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCC--ceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~--~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..+|||||||+|.....++.. +..+|+++|+|+.|++.|+++++.+... .+++|+..|+... + ...+||+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~------~~~~fDl 301 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V------EPFRFNA 301 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C------CCCCEEE
Confidence 469999999999877777665 4569999999999999999988765321 3678999987542 2 2358999
Q ss_pred EEEccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 109 VCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 109 V~~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|+|+..+|... .+...+.++++.+.++|+|||.|++..
T Consensus 302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 99998887632 234557889999999999999999885
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.40 E-value=4e-12 Score=116.79 Aligned_cols=108 Identities=17% Similarity=0.096 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-----------CCCceeEEEEcCCCCCchhhh
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ 98 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-----------~~~~~v~f~~~D~~~~~~~~~ 98 (357)
+++.+|||+|||.|.++..++..+. +|+|+|+|+.+|+.|.+..... ....++++.++|+......
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-- 112 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-- 112 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence 4678999999999999998877666 8999999999999874321100 0123688999999875431
Q ss_pred hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
....||.|....++|+ + +.+...++++.+.++|+|||++++.
T Consensus 113 ---~~~~fd~v~D~~~~~~-l-~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 113 ---DLADVDAVYDRAALIA-L-PEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred ---cCCCeeEEEehHhHhh-C-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1257999998888886 5 6788899999999999999975543
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.39 E-value=1.9e-12 Score=116.61 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=88.6
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
....+|||||||+|..+..++.. +..+|+|+|+++.+++.|+++.+..+.. ++.++++|+.... .... +++++|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~--~~~~-~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELL--DKFF-PDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHH--HhhC-CCCceeE
Confidence 35679999999999988888776 4568999999999999999888765443 7999999986421 1111 3468999
Q ss_pred EEEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352 109 VCCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGITPDSST 151 (357)
Q Consensus 109 V~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~pd~~~ 151 (357)
|++.+..+| ..... ....++++++++|||||.|++.+.+...
T Consensus 91 v~~~~pdpw-~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~ 137 (194)
T TIGR00091 91 VFLNFPDPW-PKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL 137 (194)
T ss_pred EEEECCCcC-CCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 999887665 22110 0146899999999999999998877643
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=1.2e-11 Score=120.85 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=86.3
Q ss_pred CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
..+|||+|||+|..+..+.+. +..+++++|+|+.||+.|+++.+.++. ..+++..|+... ..+.||+|+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--------~~~~fDlIv 266 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--------IKGRFDMII 266 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--------cCCCccEEE
Confidence 468999999999877777665 445899999999999999998887643 456788887542 246899999
Q ss_pred EccchhhccCC-HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 111 CFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 111 ~~~~lh~~fes-~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
|+..+|+.... ....+++++++.+.|||||.+++....
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 99999974433 456789999999999999999887543
No 73
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.36 E-value=1.5e-11 Score=118.45 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=87.6
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.+..+|||||||+|..+..+++. +..+++++|+ +.+++.|+++.+..+...+++++.+|+...++ ..+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~--------~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--------PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--------CCCCE
Confidence 35689999999999888888776 4568999998 78999999988776655579999999876544 23799
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|++...+|. + +.+...++++++++.|+|||++++.
T Consensus 219 v~~~~~lh~-~-~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 219 VLFCRILYS-A-NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEeEhhhhc-C-ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998888887 4 4566788999999999999999887
No 74
>PRK14967 putative methyltransferase; Provisional
Probab=99.36 E-value=2.2e-11 Score=111.98 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++.+..+. ++.++.+|+... + ..++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~------~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-V------EFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-c------cCCCeeE
Confidence 456789999999999888777766656999999999999999988876533 578888887542 2 3478999
Q ss_pred EEEccchhhccC-----------------CHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 109 VCCFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 109 V~~~~~lh~~fe-----------------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|+|+...+...+ .......+++.+.++|||||++++...+.
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 999753322110 12235678999999999999999875443
No 75
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.35 E-value=3.2e-11 Score=107.83 Aligned_cols=102 Identities=11% Similarity=0.058 Sum_probs=80.1
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+..+.. +++++.+|+.. .+ .++||+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~-------~~~~D~ 100 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-EL-------PGKADA 100 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hc-------CcCCCE
Confidence 46789999999999888777665 3469999999999999999887665432 58888888632 22 357999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|++....++ ...+++.+.++|+|||++++...
T Consensus 101 v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 101 IFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence 998765443 35678999999999999988643
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=2.1e-11 Score=110.86 Aligned_cols=101 Identities=14% Similarity=0.074 Sum_probs=78.7
Q ss_pred CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++.+|||+|||+|..+..++.. ..++|+|+|+++++++.|+++.+..+...+++++.+|+..... ...+||
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------~~~~fD 144 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------KHAPFD 144 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------cCCCcc
Confidence 46789999999999877666554 2468999999999999999988766543468899999865322 246899
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+|++..++++ + ..++.+.|+|||++++..
T Consensus 145 ~Ii~~~~~~~-~---------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 145 AIIVTAAAST-I---------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEEccCcch-h---------hHHHHHhcCcCcEEEEEE
Confidence 9999886654 2 246778999999998764
No 77
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=7.1e-12 Score=127.63 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=83.8
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||||||+|..+..++.. ..+++|+|+|+.|++.++++... ..++.++++|+....+. .++++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~----~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLN----ISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccC----CCCCCEEEEe
Confidence 5679999999999888887665 46999999999999987654321 23688999998643221 1457899999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|.+++|| + +.+....+++++.++|||||++++.
T Consensus 109 ~~~~l~~-l-~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMY-L-SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHh-C-CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999999 5 3455789999999999999999886
No 78
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.33 E-value=1.6e-11 Score=114.92 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=75.8
Q ss_pred HcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 27 ~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
.+..++.+|||+|||+|..+..+.+.+..+++|+|+|+.+++.|+++.+.++....+.+..+ +.+|
T Consensus 115 ~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------------~~~f 180 (250)
T PRK00517 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------------DLKA 180 (250)
T ss_pred hhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------CCCc
Confidence 34567899999999999777766665666799999999999999999876643212222111 1279
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|+|+|+... +....++.++.++|||||+++++....
T Consensus 181 D~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 181 DVIVANILA-------NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred CEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 999987532 235678999999999999999885443
No 79
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.32 E-value=5.5e-11 Score=107.39 Aligned_cols=120 Identities=12% Similarity=0.056 Sum_probs=88.5
Q ss_pred HHHHHHHc-CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (357)
Q Consensus 21 ks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~ 97 (357)
+...+.+. ..++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|+++.+..+...++.++.+|.... +
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l-- 105 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-L-- 105 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-H--
Confidence 33334443 347889999999999888777654 34689999999999999999887765334688888887542 1
Q ss_pred hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (357)
Q Consensus 98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i 152 (357)
......||+|++.... .....+++.+.++|+|||++++..++.+.+
T Consensus 106 --~~~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 151 (198)
T PRK00377 106 --FTINEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETV 151 (198)
T ss_pred --hhcCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence 1123689999885421 235678999999999999999877766443
No 80
>PRK04266 fibrillarin; Provisional
Probab=99.31 E-value=2.5e-11 Score=112.10 Aligned_cols=107 Identities=17% Similarity=0.100 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+|||+|||+|..+..++.. +.++|+|+|+|+.|++.+.++.+.. .++.++.+|+........ ...+||+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~---l~~~~D~ 144 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAH---VVEKVDV 144 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhh---ccccCCE
Confidence 47899999999999888777665 3458999999999999887776543 268899999865211111 1356999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
|++.. ........+++++.++|||||+++++++-
T Consensus 145 i~~d~------~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 145 IYQDV------AQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred EEECC------CChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 98543 22334566799999999999999998553
No 81
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.31 E-value=2.4e-12 Score=112.60 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=65.3
Q ss_pred EEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhc
Q 018352 58 IGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135 (357)
Q Consensus 58 ~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~ 135 (357)
+|+|+|++||+.|+++.+... ...+++|+++|+.+.++ .+++||+|++.+++|+ +. +..+++++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~-~~---d~~~~l~ei~rv 70 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRN-VV---DRLRAMKEMYRV 70 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhc-CC---CHHHHHHHHHHH
Confidence 589999999999988765321 12368999999988776 5689999999999998 43 567899999999
Q ss_pred ccCCcEEEEEe
Q 018352 136 LKPGGYFLGIT 146 (357)
Q Consensus 136 LkpGG~fi~t~ 146 (357)
|||||+|++..
T Consensus 71 LkpGG~l~i~d 81 (160)
T PLN02232 71 LKPGSRVSILD 81 (160)
T ss_pred cCcCeEEEEEE
Confidence 99999998773
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.28 E-value=7e-11 Score=107.84 Aligned_cols=111 Identities=19% Similarity=0.100 Sum_probs=79.5
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCC
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN 104 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~ 104 (357)
+.++.+|||||||+|..+..+++. ..++|+|+|+++ |. . ..++.++++|+........+. ...+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~---~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P---IVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C---CCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 467889999999999888777665 236899999998 21 1 125889999998754211110 1357
Q ss_pred cccEEEEccchhhccCCH--H------HHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352 105 QADLVCCFQHLQMCFETE--E------RARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~--~------~~~~~L~~i~~~LkpGG~fi~t~pd~~~i 152 (357)
+||+|+|..+.|+ ..+. + ....+|+++.++|||||.|++.+...+.+
T Consensus 117 ~~D~V~S~~~~~~-~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 117 KVQVVMSDMAPNM-SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred CCCEEecCCCCcc-CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCH
Confidence 8999999887766 3221 1 12568999999999999999987665443
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=9e-11 Score=104.01 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=84.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCce-eEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~-v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+|||+|||+|..+..++.. ..+++|+|+|+++++.++++.+......+ +.++++|.... + ...+||+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~d~ 93 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-F------RGDKFDV 93 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-c------cccCceE
Confidence 46779999999999988888776 56999999999999999988876543212 78889987652 2 2348999
Q ss_pred EEEccchhh-------------c----cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 109 VCCFQHLQM-------------C----FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 109 V~~~~~lh~-------------~----fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|+++..+.. . ..+......+++++.++|||||.+++..++.
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 998653211 1 1113446778999999999999998887654
No 84
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.28 E-value=1.2e-10 Score=111.18 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=85.2
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
+..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+.++...++.|+++|+... + +.++||+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~------~~~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L------PGRKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c------CCCCccEE
Confidence 4579999999999888877765 45699999999999999999988765544789999998542 2 23579999
Q ss_pred EEccch------h-----hccCC----------HHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352 110 CCFQHL------Q-----MCFET----------EERARRLLQNVSSLLKPGGYFLGITPDSS 150 (357)
Q Consensus 110 ~~~~~l------h-----~~fes----------~~~~~~~L~~i~~~LkpGG~fi~t~pd~~ 150 (357)
+|+--. . ...+. .+..+.+++++.++|+|||++++.+....
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM 255 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 986211 0 00011 13357889999999999999999877643
No 85
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.28 E-value=7.1e-12 Score=112.56 Aligned_cols=102 Identities=28% Similarity=0.293 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
+..+|.|||||+|..+..+.+. +...++|+|-|++||+.|+++.. +++|..+|+.+.. +...+|++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~-------p~~~~dll 96 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWK-------PEQPTDLL 96 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcC-------CCCccchh
Confidence 5679999999999777666665 77899999999999999988864 6789999987643 35789999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.++.++||.-+ --.+|..+...|.|||.+...+||.
T Consensus 97 faNAvlqWlpd----H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 97 FANAVLQWLPD----HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhccc----cHHHHHHHHHhhCCCceEEEECCCc
Confidence 99999999433 3456888889999999999999986
No 86
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=7.4e-11 Score=107.89 Aligned_cols=101 Identities=13% Similarity=0.029 Sum_probs=78.4
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
..++.+|||+|||+|..+..++.. ..++|+|+|+++++++.|+++++..+. .+++++++|+..... ..++|
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~------~~~~f 146 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYE------ENAPY 146 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCC------cCCCc
Confidence 357899999999999877666654 236999999999999999999876543 268999999865432 34789
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|+|++..+.+. +...+.+.|||||++++..
T Consensus 147 D~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCccc----------chHHHHHhhCCCcEEEEEE
Confidence 99998875443 1235667899999998864
No 87
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.27 E-value=8.6e-12 Score=113.78 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (357)
Q Consensus 18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~ 97 (357)
.|++... .+......++|+|||+|..+.- ....+.+|+|+|+|+.||+.|++..+.........+...+. .++
T Consensus 22 dw~~~ia--~~~~~h~~a~DvG~G~Gqa~~~-iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~--v~L-- 94 (261)
T KOG3010|consen 22 DWFKKIA--SRTEGHRLAWDVGTGNGQAARG-IAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM--VDL-- 94 (261)
T ss_pred HHHHHHH--hhCCCcceEEEeccCCCcchHH-HHHhhhhheeecCCHHHHHHhhcCCCcccccCCcccccccc--ccc--
Confidence 5666533 3333344899999999944444 44557899999999999999987655433222222222222 222
Q ss_pred hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCc-EEEEE
Q 018352 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGI 145 (357)
Q Consensus 98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG-~fi~t 145 (357)
...+++.|+|+|..++|| | +..++.++++++||+.| .+.+-
T Consensus 95 --~g~e~SVDlI~~Aqa~HW-F----dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 95 --LGGEESVDLITAAQAVHW-F----DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred --cCCCcceeeehhhhhHHh-h----chHHHHHHHHHHcCCCCCEEEEE
Confidence 113689999999999999 7 57789999999999877 54444
No 88
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.27 E-value=5.5e-11 Score=106.44 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=79.3
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCC
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN 104 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~ 104 (357)
+.++.+|||+|||+|+.+..+... +..+++|+|+|+.+ .. .++.++++|+.+......+. ...+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~----~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI----ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC----CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 357899999999999887777665 34589999999864 11 25788899987643211111 1346
Q ss_pred cccEEEEccchhh----ccC---CHHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHHH
Q 018352 105 QADLVCCFQHLQM----CFE---TEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQ 157 (357)
Q Consensus 105 ~FDlV~~~~~lh~----~fe---s~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~~ 157 (357)
+||+|+|..+.|+ .+. +.+..+.+++++.++|+|||++++..... ..++..++
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR 160 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence 8999998654321 111 12345789999999999999999865444 34444443
No 89
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=7.1e-11 Score=108.73 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=89.0
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh-----------cCCCceeEEEEcCCCCCchhhh
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-----------QRKNFIAEFFEADPCAENFETQ 98 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~-----------~~~~~~v~f~~~D~~~~~~~~~ 98 (357)
.++.+||+.|||+|.++..++..+. +|+|+|+|+.+|+.+.+.... .....++++.++|++..+...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~- 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA- 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence 4568999999999999999888777 799999999999998663210 001236899999998854210
Q ss_pred hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
...++||+|.-..+++. + ..+...++.+.+.++|+|||.+++.+.+
T Consensus 120 --~~~~~fD~VyDra~~~A-l-pp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 120 --NNLPVFDIWYDRGAYIA-L-PNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred --cccCCcCeeeeehhHhc-C-CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 02368999998888886 5 6788899999999999999999888643
No 90
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.26 E-value=1e-10 Score=107.01 Aligned_cols=102 Identities=12% Similarity=0.016 Sum_probs=78.9
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
..++.+|||+|||+|..+..++... ..+|+|+|+++++++.|+++++..+. .+++++++|+..... ...+|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~------~~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE------PLAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc------ccCCC
Confidence 3578899999999998887776652 34699999999999999999887654 368999999865322 23689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|+|++..+.+. +...+.+.|+|||++++...
T Consensus 148 D~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 148 DRIYVTAAGPK----------IPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred CEEEEcCCccc----------ccHHHHHhcCcCcEEEEEEc
Confidence 99998775444 23457789999999998643
No 91
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.25 E-value=1.3e-10 Score=113.17 Aligned_cols=120 Identities=18% Similarity=0.109 Sum_probs=91.0
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..++.+|||+|||+|+.+...... ..+++|+|+++.|++.|+.+.+..+.. ++.+.++|+...++ ..++||+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~------~~~~~D~ 251 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPL------SSESVDA 251 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCc------ccCCCCE
Confidence 457889999999999888776554 458999999999999999988765443 37889999987655 3578999
Q ss_pred EEEccchhh--cc---CCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352 109 VCCFQHLQM--CF---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (357)
Q Consensus 109 V~~~~~lh~--~f---es~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~ 156 (357)
|++...+.- .. ...+....+++++.++|||||++++.+|+...+.+.+
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~ 304 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLA 304 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHH
Confidence 999642211 00 0123467899999999999999999988875554433
No 92
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.25 E-value=1.5e-10 Score=107.45 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..+.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+.. ++.++++|+.. .+ ..++||+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~------~~~~fD~ 157 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PL------PGGKFDL 157 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cC------cCCceeE
Confidence 34569999999999888888765 4569999999999999999988765443 68999999865 23 3578999
Q ss_pred EEEccchhh------cc------CC----------HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 109 VCCFQHLQM------CF------ET----------EERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 109 V~~~~~lh~------~f------es----------~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
|+|+..++. .. +. ......+++++.++|+|||.+++....
T Consensus 158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 999653321 00 00 122357899999999999999987643
No 93
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.24 E-value=4e-11 Score=114.63 Aligned_cols=106 Identities=25% Similarity=0.314 Sum_probs=81.1
Q ss_pred HHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (357)
Q Consensus 23 ~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~ 102 (357)
.++.++..++.+|||+|||+|-.+...++.+.++|+|+|+++.+++.|++..+.++...++.+. . .... .
T Consensus 153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~--~~~~------~ 222 (295)
T PF06325_consen 153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L--SEDL------V 222 (295)
T ss_dssp HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C--TSCT------C
T ss_pred HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E--eccc------c
Confidence 3456677888999999999998888777788889999999999999999999887665444332 1 1122 2
Q ss_pred CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.++||+|+++-.. +-...++..+.++|+|||++|++
T Consensus 223 ~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 223 EGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred cccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEc
Confidence 4889999987633 34667888999999999999987
No 94
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=5.5e-11 Score=113.07 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=82.0
Q ss_pred HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (357)
Q Consensus 24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~ 103 (357)
.+.++..++.+|||+|||+|-.+...++.+..+++|+|+++.+++.|+++.+.++....+.....+..... ..
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-------~~ 227 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-------EN 227 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-------cc
Confidence 35566678999999999999888888888999999999999999999999887744321111111111111 23
Q ss_pred CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
++||+|+++--- +-...+...+.+.|||||++|.+-
T Consensus 228 ~~~DvIVANILA-------~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 228 GPFDVIVANILA-------EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred CcccEEEehhhH-------HHHHHHHHHHHHHcCCCceEEEEe
Confidence 699999998622 235688999999999999999884
No 95
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.24 E-value=9.4e-11 Score=115.53 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=89.6
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.+..+||||||+|..+..++.. +...++|+|+++.+++.|.++....+.. ++.++++|+.... ..+ +++++|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll--~~~--~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLL--ELL--PSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhh--hhC--CCCceeEE
Confidence 3568999999999999888876 4569999999999999999998766543 6999999985421 111 46899999
Q ss_pred EEccchhhccCCHH---HHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352 110 CCFQHLQMCFETEE---RARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (357)
Q Consensus 110 ~~~~~lh~~fes~~---~~~~~L~~i~~~LkpGG~fi~t~pd~~~i 152 (357)
++.+...| ..... ....+++.++++|+|||.+.+.|-+.+..
T Consensus 197 ~lnFPdPW-~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 197 FVHFPVPW-DKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred EEeCCCCc-cccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 99886665 21111 12578999999999999999988776544
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.24 E-value=1e-10 Score=91.07 Aligned_cols=103 Identities=24% Similarity=0.274 Sum_probs=81.6
Q ss_pred EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (357)
Q Consensus 34 ~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~ 113 (357)
+|||+|||.|..+..+......+++++|+++.+++.+++..... ...++.++..|+..... ...++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPP-----EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcc-----ccCCceEEEEEcc
Confidence 58999999999888887756679999999999999988543322 23368888988866432 0247899999999
Q ss_pred chhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 114 ~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.+++ + .+....+++++.+.|++||+++++
T Consensus 75 ~~~~-~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHH-L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceee-h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 7776 2 567889999999999999999876
No 97
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.21 E-value=8.8e-11 Score=108.94 Aligned_cols=134 Identities=17% Similarity=0.133 Sum_probs=98.5
Q ss_pred HHHHHHHHcCC--CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352 20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (357)
Q Consensus 20 vks~Li~~~~~--~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~ 96 (357)
+.++|+..+.+ ...+|||||||+|.....+++. ...+++|||+++++.+.|++..+.+....+++++++|+.....
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~- 109 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK- 109 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh-
Confidence 45677777765 4679999999999766666665 4479999999999999999999888778899999999866332
Q ss_pred hhhhhcCCcccEEEEccchhhcc----CC----------HHHHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHHH
Q 018352 97 TQMQEKANQADLVCCFQHLQMCF----ET----------EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (357)
Q Consensus 97 ~~l~~~~~~FDlV~~~~~lh~~f----es----------~~~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~~ 157 (357)
.. ...+||+|+|+--++-.- ++ .-....+++.++++||+||++.+..+-. ..|...++
T Consensus 110 -~~--~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~ 183 (248)
T COG4123 110 -AL--VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK 183 (248)
T ss_pred -cc--cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH
Confidence 11 235799999975432210 01 1124679999999999999999887654 33444443
No 98
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=7.7e-11 Score=107.57 Aligned_cols=160 Identities=18% Similarity=0.222 Sum_probs=109.7
Q ss_pred EEEEECCCCChhHHHHHHhc---CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 34 TVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 34 ~VLDlGCG~G~~l~k~~~~~---~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
+||++|||.|..+..+++.. .-.++++|.|+.+|+..+++..... .++.-.+.|++...+...+ ..+++|+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~--~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPP--EEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCC--CcCccceEE
Confidence 79999999998777777652 2479999999999998887654331 2455667777765543222 358999999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeec
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV 190 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~ 190 (357)
+.|++-- . +.++..+++.|++++|||||.+++.-.....+.. ++|..
T Consensus 150 ~IFvLSA-i-~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq-------------------------------lRF~~ 196 (264)
T KOG2361|consen 150 LIFVLSA-I-HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ-------------------------------LRFKK 196 (264)
T ss_pred EEEEEec-c-ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH-------------------------------HhccC
Confidence 9998765 3 6788999999999999999999988544433211 11110
Q ss_pred ccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEec
Q 018352 191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQ 238 (357)
Q Consensus 191 ~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~ 238 (357)
+ ..++ .+|+.-++.+. -|.-+-+.|..++.++||+.++..
T Consensus 197 ~----~~i~--~nfYVRgDGT~--~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 197 G----QCIS--ENFYVRGDGTR--AYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred C----ceee--cceEEccCCce--eeeccHHHHHHHHHhcccchhccc
Confidence 0 0000 11222233322 266677889999999999988753
No 99
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.21 E-value=3.6e-10 Score=107.11 Aligned_cols=103 Identities=20% Similarity=0.154 Sum_probs=76.2
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHH--HhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~--r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.+.+|||||||+|..+..++.++.+.|+|+|.+....-+.+. ++-.. ...+....+.-+.+ +. .+.||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~----~~~~~~lplgvE~L----p~-~~~FDt 185 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ----DPPVFELPLGVEDL----PN-LGAFDT 185 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC----CccEEEcCcchhhc----cc-cCCcCE
Confidence 688999999999999999999999999999999988877443 33222 11222222211122 11 478999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|+|..++.| ..+.-.+|+.+++.|++||.+++-|
T Consensus 186 VF~MGVLYH----rr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLYH----RRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehhc----cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 999997766 3456778999999999999999774
No 100
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.20 E-value=2.4e-10 Score=102.96 Aligned_cols=110 Identities=20% Similarity=0.216 Sum_probs=81.8
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+..+. .+++++.+|+... + .. ....+|.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~-~-~~---~~~~~d~ 112 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPEC-L-AQ---LAPAPDR 112 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHH-H-hh---CCCCCCE
Confidence 36789999999999887777654 457999999999999999998876543 2688999987441 1 00 1234677
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHH
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~ 153 (357)
|++.. ......+++++.++|+|||+|++.+++.+.+.
T Consensus 113 v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 149 (196)
T PRK07402 113 VCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGLY 149 (196)
T ss_pred EEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence 65422 12356789999999999999999988865543
No 101
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.20 E-value=4.1e-10 Score=108.66 Aligned_cols=110 Identities=19% Similarity=0.184 Sum_probs=83.6
Q ss_pred CEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+..+...+++|+++|+.. .+ +.++||+|+|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l------~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-AL------PGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hC------CCCCccEEEE
Confidence 68999999999888777665 4569999999999999999998876554468999999754 22 2357999998
Q ss_pred ccch------hh-----ccCC----------HHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 112 FQHL------QM-----CFET----------EERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 112 ~~~l------h~-----~fes----------~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
+-.. .. .++. .+..+.+++++.+.|+|||++++.+...
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 6311 10 0011 2345789999999999999999986654
No 102
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.19 E-value=5.1e-10 Score=106.80 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=83.7
Q ss_pred CEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+..+...++.|+++|+... + ...+||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~------~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L------AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C------cCCCccEEEE
Confidence 69999999999888777765 34699999999999999999887665444589999998652 2 2347999998
Q ss_pred ccc-------------hhh----cc----CCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 112 FQH-------------LQM----CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 112 ~~~-------------lh~----~f----es~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
+-. .+| ++ ...+..+.+++++.+.|+|||++++.+.+.
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 621 111 00 012357789999999999999999887654
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.18 E-value=3.4e-10 Score=103.19 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=77.1
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++.+|||+|||+|..+..++... .+++++|+++++++.|+++++..+.. ++++..+|...... ..++||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP------AYAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC------cCCCcCEE
Confidence 467899999999998776555443 58999999999999999998765432 58899999754211 23789999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
++..++++ +.+.+.+.|+|||.+++...
T Consensus 149 ~~~~~~~~----------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPE----------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence 99875554 13456789999999998865
No 104
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.13 E-value=8.4e-10 Score=99.70 Aligned_cols=130 Identities=19% Similarity=0.256 Sum_probs=77.6
Q ss_pred CCcchHHHHHHHHHHHHHHHcC-CCCCEEEEECCCCChhHHHHH----H---h--c-CCeEEEEeCChHHHHHHHHH---
Q 018352 8 RSELTHHRLYEFAKTALIKIYS-HPYVTVCDLYCGAGVDVDKWE----T---A--L-IANYIGIDVATSGIGEARDT--- 73 (357)
Q Consensus 8 r~~~p~~~~~nwvks~Li~~~~-~~~~~VLDlGCG~G~~l~k~~----~---~--~-~~~v~GiDiS~~~l~~A~~r--- 73 (357)
|.......+.+.+...++.+.. ....+|+..||++|.....++ . . + ..+++|+|||+.+|+.|++-
T Consensus 7 Rd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~ 86 (196)
T PF01739_consen 7 RDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYP 86 (196)
T ss_dssp TTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEE
T ss_pred CCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCC
Confidence 3333444455555544443322 256799999999997554332 2 1 1 23899999999999999871
Q ss_pred --------------h--HhcC--------CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHH
Q 018352 74 --------------W--ENQR--------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLL 129 (357)
Q Consensus 74 --------------~--~~~~--------~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L 129 (357)
| +..+ ....+.|.+.|+.+... ..+.||+|+|.+++-| | +.+..++++
T Consensus 87 ~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~------~~~~fD~I~CRNVlIY-F-~~~~~~~vl 158 (196)
T PF01739_consen 87 ERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP------PFGRFDLIFCRNVLIY-F-DPETQQRVL 158 (196)
T ss_dssp GGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGG-S--HHHHHHHH
T ss_pred HHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCc------ccCCccEEEecCEEEE-e-CHHHHHHHH
Confidence 1 0000 12257899999887222 3588999999999999 8 677789999
Q ss_pred HHHHhcccCCcEEEEE
Q 018352 130 QNVSSLLKPGGYFLGI 145 (357)
Q Consensus 130 ~~i~~~LkpGG~fi~t 145 (357)
+.+++.|+|||+|++.
T Consensus 159 ~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 159 RRLHRSLKPGGYLFLG 174 (196)
T ss_dssp HHHGGGEEEEEEEEE-
T ss_pred HHHHHHcCCCCEEEEe
Confidence 9999999999999876
No 105
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=1.1e-09 Score=103.38 Aligned_cols=110 Identities=20% Similarity=0.239 Sum_probs=82.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.. .....++.++.+|+... + ..++||+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~------~~~~fD~ 178 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L------PGGRFDL 178 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C------CCCceeE
Confidence 35679999999999888887766 45799999999999999999887 22234789999998542 2 2468999
Q ss_pred EEEccchhh------c------c----------CCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 109 VCCFQHLQM------C------F----------ETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 109 V~~~~~lh~------~------f----------es~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|+|+....- . + ...+..+.+++++.++|+|||++++.+.
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 998542110 0 0 0123457899999999999999998753
No 106
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.2e-09 Score=103.57 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=83.6
Q ss_pred CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
+.+|||+|||.|-....+++. +..+++.+|+|..+|+.|++..+.++... ..+...|..+.- .++||+|+
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v--------~~kfd~Ii 229 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPV--------EGKFDLII 229 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccccc--------cccccEEE
Confidence 459999999999766666665 46799999999999999999998775432 256777766532 24899999
Q ss_pred EccchhhccCC-HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 111 CFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 111 ~~~~lh~~fes-~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
|+--+|---.. ..-..++++...+.|++||.+.+..-.
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence 99999863211 223558999999999999999888543
No 107
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.12 E-value=8.1e-10 Score=99.65 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=81.8
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-CchhhhhhhcCCcccEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADLVC 110 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~~~~~FDlV~ 110 (357)
..-|||||||+|-...-+...+ ...+|+|||+.||++|.++-- .-.++.+|+-. .+| .+++||.|+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~------egdlil~DMG~Glpf------rpGtFDg~I 117 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVEREL------EGDLILCDMGEGLPF------RPGTFDGVI 117 (270)
T ss_pred CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhh------hcCeeeeecCCCCCC------CCCccceEE
Confidence 5679999999994444444445 689999999999999987421 23467777643 344 679999999
Q ss_pred EccchhhccC-------CHHHHHHHHHHHHhcccCCcEEEEEe-CCchHHHHHH
Q 018352 111 CFQHLQMCFE-------TEERARRLLQNVSSLLKPGGYFLGIT-PDSSTIWAKY 156 (357)
Q Consensus 111 ~~~~lh~~fe-------s~~~~~~~L~~i~~~LkpGG~fi~t~-pd~~~i~~~~ 156 (357)
+..+++|.+. .......|+..++.+|++|++.++.. |..+.-++.+
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i 171 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI 171 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence 9888887542 23456778999999999999999884 4444333433
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.12 E-value=1.8e-09 Score=101.29 Aligned_cols=110 Identities=21% Similarity=0.276 Sum_probs=79.6
Q ss_pred CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+.++ .+|+++|+... +... ..++||+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~-l~~~---~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDA-LPTA---LRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhh-cchh---cCCCEeEEE
Confidence 458999999999888777654 44589999999999999999887652 47889997642 1110 125799999
Q ss_pred Eccchh------hc------cC----------CHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 111 CFQHLQ------MC------FE----------TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 111 ~~~~lh------~~------fe----------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
++--.. .+ ++ ..+-.+.+++++.++|+|||.+++.+...
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 875321 10 00 01235688999999999999999886543
No 109
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.11 E-value=1.4e-09 Score=108.37 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
++.+|||+|||+|+.+...+..+..+++++|+|+.+++.|++.++.++.. .+++++++|+... ...+....++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~--l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH--HHHHHhcCCCCCEE
Confidence 57899999999999877666666679999999999999999999877654 3689999998642 11121124689999
Q ss_pred EEccchhhccCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 110 CCFQHLQMCFETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 110 ~~~~~lh~~fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
++.--. + -.+. .....+++.+.++|+|||+++.++++.
T Consensus 298 ilDPP~-f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 298 VMDPPK-F-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred EECCCC-C-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 987431 0 0111 234566778899999999999876553
No 110
>PTZ00146 fibrillarin; Provisional
Probab=99.11 E-value=1.4e-09 Score=103.38 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=77.2
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
+.++.+|||+|||+|..+..++.. ....|+++|+|+.|++...+..+.. .++.++.+|+..... +.....+|
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~---y~~~~~~v 203 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK---YRMLVPMV 203 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh---hhcccCCC
Confidence 458899999999999988888776 2468999999998665544443321 268889999865321 11123579
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+|++..+ ..++.+.++.++.+.|||||+|++.
T Consensus 204 DvV~~Dva------~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA------QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC------CcchHHHHHHHHHHhccCCCEEEEE
Confidence 99988763 2346777888999999999999985
No 111
>PRK04457 spermidine synthase; Provisional
Probab=99.11 E-value=1.2e-09 Score=103.15 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=82.0
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++..+|||||||.|..+..++.. +..+++++|+++++++.|++.+.......+++++.+|+... +....++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-----l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-----IAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-----HHhCCCCCCE
Confidence 45679999999999777766554 55789999999999999999876433334789999997541 1112468999
Q ss_pred EEEccchhhc-cCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352 109 VCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (357)
Q Consensus 109 V~~~~~lh~~-fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~ 150 (357)
|++.. ++.. ....-....+++++.++|+|||++++...+.+
T Consensus 140 I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 140 ILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred EEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 98753 2110 00001136899999999999999998754443
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=1.6e-09 Score=109.18 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=83.2
Q ss_pred CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+|||+|||+|+.+..++... ..+|+|+|+|+.+++.++++.+..+. ++.++++|+...... . ..++||.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~--~--~~~~fD~ 316 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQW--W--DGQPFDR 316 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhh--c--ccCCCCE
Confidence 368899999999999888877663 36999999999999999999877644 468899998753210 0 2467999
Q ss_pred EEEccc------------hhhccCCHH-------HHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 109 VCCFQH------------LQMCFETEE-------RARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 109 V~~~~~------------lh~~fes~~-------~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
|++... ++| ..+.+ ..++++.++.++|||||+++.+++.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred EEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 985321 112 11222 2457899999999999999988653
No 113
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=2.3e-09 Score=108.50 Aligned_cols=110 Identities=25% Similarity=0.216 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++.+|||+|||+|+.+..++.. +.++++|+|+|+.+++.++++.+..+.. +++++++|+.... +.++||+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-------~~~~fD~ 321 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-------PEEQPDA 321 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-------cCCCCCE
Confidence 6789999999999877766553 3468999999999999999998876543 6899999986532 2468999
Q ss_pred EEEc----cc--------hhhccCCHH-------HHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 109 VCCF----QH--------LQMCFETEE-------RARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 109 V~~~----~~--------lh~~fes~~-------~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|++- .. .+|.+ +.+ ....+|.++.+.|||||+++..|+..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~-~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKL-TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcC-CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9862 11 11211 222 23568999999999999999887654
No 114
>PRK00811 spermidine synthase; Provisional
Probab=99.08 E-value=7.2e-10 Score=105.75 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=83.7
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC----CCceeEEEEcCCCCCchhhhhhhcCC
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKAN 104 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~~~~~~~l~~~~~ 104 (357)
+...+||+||||.|+.+..+++. +..+|+++|+++.+++.|++.+.... ...+++++.+|+.. + +....+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~---l~~~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--F---VAETEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--H---HhhCCC
Confidence 35679999999999988888776 56799999999999999999875421 13478999999754 2 111357
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
+||+|++...-++.....-..+.+++.+.+.|+|||+++....
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 8999998654443111111236789999999999999998643
No 115
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.08 E-value=1.3e-09 Score=102.88 Aligned_cols=112 Identities=14% Similarity=0.078 Sum_probs=82.2
Q ss_pred CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++.+|||+|||+|+.+..++.. ..+.|+++|+++.+++.++++++..+.. ++.+++.|+..... ..+.||
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~------~~~~fD 142 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA------AVPKFD 142 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh------hccCCC
Confidence 47789999999999988777664 2458999999999999999998876543 58888998754322 235699
Q ss_pred EEEEccc------hh------hccCCHH-------HHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 108 LVCCFQH------LQ------MCFETEE-------RARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 108 lV~~~~~------lh------~~fes~~-------~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
+|++.-. ++ +.+ +.+ ...++|+++.+.|||||+++.+|+.-
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~-~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNW-SEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcC-CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9986321 11 001 111 23569999999999999999886553
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=1.6e-09 Score=109.15 Aligned_cols=114 Identities=17% Similarity=0.101 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++.+|||+|||+|+.+..++.. +.++++++|+|+.+++.++++++..+.. ++++.++|+...+. . ..++||
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~--~---~~~~fD 309 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE--Y---VQDTFD 309 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh--h---hhccCC
Confidence 36789999999999988777665 3569999999999999999998876543 58899999865331 0 246799
Q ss_pred EEEEcc---chhhc--------cCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 108 LVCCFQ---HLQMC--------FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 108 lV~~~~---~lh~~--------fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.|++.. ++..+ ..+. ....++|.++.+.|||||+++.+|+.-
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 998732 12221 0111 134678999999999999999887664
No 117
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.07 E-value=1.6e-09 Score=109.10 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
++.+|||+|||+|+.+..++.. +.++++|+|+++.+++.++++.+..+....+.+..+|........ ..++||.|
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~----~~~~fD~V 313 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA----ENEQFDRI 313 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc----cccccCEE
Confidence 6889999999999988887765 446999999999999999999987654434455667765432210 24689999
Q ss_pred EEc------cchhhc-----cCCHH-------HHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 110 CCF------QHLQMC-----FETEE-------RARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 110 ~~~------~~lh~~-----fes~~-------~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
++. ..++.. ..+.+ ..+++|.++.++|||||+++.+|+.-
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 852 123220 00111 24689999999999999999886654
No 118
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.07 E-value=5.6e-10 Score=102.55 Aligned_cols=109 Identities=25% Similarity=0.223 Sum_probs=82.8
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-----------CCCceeEEEEcCCCCCchhh
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFET 97 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-----------~~~~~v~f~~~D~~~~~~~~ 97 (357)
..++.+||..|||+|.++..++..+. +|+|+|+|+.+|++|.+..... ....++++.++|.+..+..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~- 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE- 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS-
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh-
Confidence 45678999999999999988888776 9999999999999986543320 0122578999999884431
Q ss_pred hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
..++||+|.-..+++- + +.+...+..+.++++|+|||.++..
T Consensus 113 ----~~g~fD~iyDr~~l~A-l-pp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 113 ----DVGKFDLIYDRTFLCA-L-PPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp ----CHHSEEEEEECSSTTT-S--GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred ----hcCCceEEEEeccccc-C-CHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 1258999998888875 4 5677889999999999999995443
No 119
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.07 E-value=1.5e-10 Score=104.92 Aligned_cols=141 Identities=18% Similarity=0.288 Sum_probs=96.9
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
-.++|||||||| .+..-++.-..+++|+|||+.||+.|.++---. ...++|+.. |.... ....||+|+.
T Consensus 126 F~~~lDLGCGTG-L~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD------~L~~Aea~~--Fl~~~--~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLYD------TLYVAEAVL--FLEDL--TQERFDLIVA 194 (287)
T ss_pred cceeeecccCcC-cccHhHHHHHhhccCCchhHHHHHHHHhccchH------HHHHHHHHH--Hhhhc--cCCcccchhh
Confidence 478999999999 443334555568999999999999998762110 123333321 21111 3578999999
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeecc
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~ 191 (357)
.-++-| + .....++--+..+|+|||.|.+++-+..
T Consensus 195 aDVl~Y-l---G~Le~~~~~aa~~L~~gGlfaFSvE~l~----------------------------------------- 229 (287)
T COG4976 195 ADVLPY-L---GALEGLFAGAAGLLAPGGLFAFSVETLP----------------------------------------- 229 (287)
T ss_pred hhHHHh-h---cchhhHHHHHHHhcCCCceEEEEecccC-----------------------------------------
Confidence 999999 3 3567789999999999999998743210
Q ss_pred cCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEEEecCc
Q 018352 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (357)
Q Consensus 192 ~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv~~~~f 240 (357)
-+|. |.+.. ...|-++-+.+.++++..||+++....-
T Consensus 230 -----~~~~---f~l~p----s~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 230 -----DDGG---FVLGP----SQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred -----CCCC---eecch----hhhhccchHHHHHHHHhcCceEEEeecc
Confidence 0111 22222 2347778888999999999999987643
No 120
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.07 E-value=3.3e-09 Score=105.42 Aligned_cols=112 Identities=17% Similarity=0.109 Sum_probs=82.8
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++.+..+. ++.|+++|+....+. ..++||+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~-----~~~~FDL 322 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMP-----SEGKWDI 322 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccc-----cCCCccE
Confidence 45679999999999888777654 567999999999999999999876543 789999998654321 1357999
Q ss_pred EEEccchhh-----------------cc----CCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 109 VCCFQHLQM-----------------CF----ETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 109 V~~~~~lh~-----------------~f----es~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
|+|+-...- ++ ...+-.+++++.+.+.|+|||.+++.+..
T Consensus 323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 999653210 00 01123567888899999999998876543
No 121
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=2.7e-09 Score=107.66 Aligned_cols=125 Identities=17% Similarity=0.132 Sum_probs=87.9
Q ss_pred HHHHHHcC--CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352 22 TALIKIYS--HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (357)
Q Consensus 22 s~Li~~~~--~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~ 97 (357)
+.++...+ .++.+|||+|||.|+.+..++.. +.++++++|+++.+++.++++.+..+.. ++.++++|+......
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~- 318 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLEL- 318 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccc-
Confidence 34444433 36789999999999988887765 3468999999999999999998876543 589999998764310
Q ss_pred hhhhcCCcccEEEEcc------chhhc-----cCCHHH-------HHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 98 QMQEKANQADLVCCFQ------HLQMC-----FETEER-------ARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 98 ~l~~~~~~FDlV~~~~------~lh~~-----fes~~~-------~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.....++||.|++.. .++.- .-+.++ ..++|.++.++|||||+++..|+.-
T Consensus 319 -~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 319 -KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred -cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 000246899999632 22210 001122 4688999999999999998776543
No 122
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.04 E-value=2.2e-09 Score=110.24 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=81.0
Q ss_pred CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+...++.++++|+... + ..++||+|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~------~~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I------EKQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C------cCCCccEEE
Confidence 468999999999877776654 55699999999999999999987665444688999997541 2 246899999
Q ss_pred Eccchh--------------h-----ccC---CHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 111 CFQHLQ--------------M-----CFE---TEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 111 ~~~~lh--------------~-----~fe---s~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|+-... | .+. ..+..+.+++++.++|+|||.+++.+-
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 854211 0 010 123456788999999999999987743
No 123
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.03 E-value=9.5e-09 Score=91.12 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=95.2
Q ss_pred HHHHHHHHcC-CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352 20 AKTALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (357)
Q Consensus 20 vks~Li~~~~-~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~ 97 (357)
|+...+.++. .++.+++|+|||+|..+..|+.. +.++++++|-++++++..+++.+..+ ..+++.+.+|+-..--
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~-- 98 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALP-- 98 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhc--
Confidence 4455555553 48899999999999999999855 56799999999999999988887766 4588999999854211
Q ss_pred hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (357)
Q Consensus 98 ~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~ 156 (357)
...+||.|++..+ .....+|+.+...|||||++++....-+.+...+
T Consensus 99 ----~~~~~daiFIGGg--------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~ 145 (187)
T COG2242 99 ----DLPSPDAIFIGGG--------GNIEEILEAAWERLKPGGRLVANAITLETLAKAL 145 (187)
T ss_pred ----CCCCCCEEEECCC--------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHH
Confidence 1127999998874 2356789999999999999999977766554433
No 124
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.02 E-value=3.4e-09 Score=112.90 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=89.4
Q ss_pred HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhc
Q 018352 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEK 102 (357)
Q Consensus 24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~ 102 (357)
++.++. ++.+|||+|||+|+.+..++..+..+|+++|+|+.+++.|++.++.++.. .+++|+++|+... + ...
T Consensus 532 ~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l----~~~ 605 (702)
T PRK11783 532 MIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-L----KEA 605 (702)
T ss_pred HHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-H----HHc
Confidence 344444 46899999999999998888877778999999999999999999877654 4689999998541 1 112
Q ss_pred CCcccEEEEccch-------hhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 103 ANQADLVCCFQHL-------QMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 103 ~~~FDlV~~~~~l-------h~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
.++||+|++.--. ...+........++..+.++|+|||.+++++..
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 4689999985321 011223455677899999999999999876543
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.02 E-value=3.1e-09 Score=93.48 Aligned_cols=108 Identities=12% Similarity=0.042 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++.+|||+|||+|..+..++.. ..+++|+|+++.+++.+++++... .+++++++|+....+ ...+||.|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~------~~~~~d~v 81 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDL------PKLQPYKV 81 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCc------cccCCCEE
Confidence 46789999999999888888776 569999999999999999887542 268899999987655 34579999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i 152 (357)
+++..+|. +.+....++++. .+.++|.|++..-.++.+
T Consensus 82 i~n~Py~~---~~~~i~~~l~~~--~~~~~~~l~~q~e~a~rl 119 (169)
T smart00650 82 VGNLPYNI---STPILFKLLEEP--PAFRDAVLMVQKEVARRL 119 (169)
T ss_pred EECCCccc---HHHHHHHHHhcC--CCcceEEEEEEHHHhHHh
Confidence 98876554 334444554432 245888888774444333
No 126
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.01 E-value=9.1e-09 Score=92.86 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=83.8
Q ss_pred HHHcCCCCC-EEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh--h
Q 018352 25 IKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM--Q 100 (357)
Q Consensus 25 i~~~~~~~~-~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l--~ 100 (357)
++++++... +|||||||+|..+..++.+ +.-...-.|+++..+...+......+...-..-+..|+......... .
T Consensus 18 L~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~ 97 (204)
T PF06080_consen 18 LKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP 97 (204)
T ss_pred HHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence 344555555 5999999999999988876 55578889999988766555544332111112245666654221000 0
Q ss_pred hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
....+||+|+|...+|.+ +.+..+.+++.+.++|++||.|++-.|
T Consensus 98 ~~~~~~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 98 LSPESFDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred cCCCCcceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 024689999999999984 577789999999999999999987744
No 127
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=3.6e-09 Score=98.25 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~F 106 (357)
+..+|||+|||+|..+..++.. +.++++++|+++++++.|++.++..+...+++++.+|+... + ..+.. ..++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L-~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-L-DQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-H-HHHHhCCCCCCC
Confidence 4679999999999766666554 35699999999999999999998877666799999998652 1 11111 14689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+|++.. .......++..+.++|+|||.+++.
T Consensus 146 D~VfiDa-------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDA-------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECC-------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9997654 2345567899999999999998875
No 128
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.01 E-value=5.7e-09 Score=105.66 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++.+|||+|||+|+.+..++.. +.++++|+|+++.+++.++++.+..+.. ++.++++|+..... . ..++||
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~--~---~~~~fD 322 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE--K---FAEKFD 322 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--h---hcccCC
Confidence 36789999999999988887765 3569999999999999999998776543 58999999866321 0 126799
Q ss_pred EEEEccch------------hhccCCHHH-------HHHHHHHHHhcccCCcEEEEEeCC
Q 018352 108 LVCCFQHL------------QMCFETEER-------ARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 108 lV~~~~~l------------h~~fes~~~-------~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
+|++.... .+ ..+..+ ...+|+++.++|||||+++.+++.
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKY-NKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhh-cCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99875321 11 112222 356899999999999999977554
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=4.7e-09 Score=101.73 Aligned_cols=101 Identities=11% Similarity=0.015 Sum_probs=76.1
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
..++.+|||+|||+|..+..+++.. .++|+|+|+++++++.|+++.+..+. .++.++++|+..... ...+|
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~------~~~~f 150 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVP------EFAPY 150 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhccc------ccCCc
Confidence 3467899999999998777776642 24799999999999999998876544 368899999755322 23579
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|+|++..+.+. ....+.+.|+|||++++..
T Consensus 151 D~Ii~~~g~~~----------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGVDE----------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCchHH----------hHHHHHHhcCCCCEEEEEe
Confidence 99998875544 1233567899999988754
No 130
>PHA03411 putative methyltransferase; Provisional
Probab=99.01 E-value=2.5e-09 Score=100.73 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
...+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++.. ++.++++|+..... ..+||+|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~~-------~~kFDlI 130 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFES-------NEKFDVV 130 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhcc-------cCCCcEE
Confidence 4579999999999777766554 34699999999999999988642 57889999875322 3689999
Q ss_pred EEccchhhccCCHH--H---------------HHHHHHHHHhcccCCcEEEEE
Q 018352 110 CCFQHLQMCFETEE--R---------------ARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 110 ~~~~~lh~~fes~~--~---------------~~~~L~~i~~~LkpGG~fi~t 145 (357)
+++..++. ....+ . ..+++..+..+|+|+|.+++.
T Consensus 131 IsNPPF~~-l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 131 ISNPPFGK-INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEcCCccc-cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 99887665 21111 1 246778888999999977665
No 131
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.8e-08 Score=96.09 Aligned_cols=114 Identities=20% Similarity=0.262 Sum_probs=82.6
Q ss_pred EEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352 34 TVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 34 ~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
+|||||||+|..+..++... ...|+|+|+|+.+++.|++....++. .++.+++.|.+.. + .++||+|+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~-------~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-L-------RGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-c-------CCceeEEEeC
Confidence 79999999998887777663 45999999999999999999988765 3566677776552 2 3589999986
Q ss_pred cch------hh------------cc---CCHHHHHHHHHHHHhcccCCcEEEEEeC-Cc-hHHHHHH
Q 018352 113 QHL------QM------------CF---ETEERARRLLQNVSSLLKPGGYFLGITP-DS-STIWAKY 156 (357)
Q Consensus 113 ~~l------h~------------~f---es~~~~~~~L~~i~~~LkpGG~fi~t~p-d~-~~i~~~~ 156 (357)
--. +. ++ ...+..++++.++.+.|+|||.+++-+- +. ..+.+.+
T Consensus 184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~ 250 (280)
T COG2890 184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF 250 (280)
T ss_pred CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH
Confidence 421 00 00 0123467899999999999999888754 44 3344433
No 132
>PRK01581 speE spermidine synthase; Validated
Probab=98.91 E-value=2.5e-08 Score=97.37 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHH--hH---hcC-CCceeEEEEcCCCCCchhhhhhhc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDT--WE---NQR-KNFIAEFFEADPCAENFETQMQEK 102 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r--~~---~~~-~~~~v~f~~~D~~~~~~~~~l~~~ 102 (357)
....+||+||||.|..+..+++. +..+++++|+++++++.|++. +. ... ...+++++.+|+.. + +...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--f---L~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--F---LSSP 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--H---HHhc
Confidence 34579999999999888777776 457999999999999999962 11 111 13478899999864 2 1113
Q ss_pred CCcccEEEEccchhhc-cCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 103 ANQADLVCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 103 ~~~FDlV~~~~~lh~~-fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
.++||+|++...-... ....-....+++.+++.|+|||+|+...
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 5689999987521110 0011223678999999999999998774
No 133
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.89 E-value=1.6e-08 Score=91.30 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
....+||||||+|..+..++.. +...++|+|++...+..|.++....+. .|+.++++|+.. +...+. +++++|.|
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~--~l~~~~-~~~~v~~i 92 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARE--LLRRLF-PPGSVDRI 92 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTT--HHHHHS-TTTSEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHH--HHhhcc-cCCchheE
Confidence 3448999999999999988876 667999999999999999998876543 389999999865 212221 35899999
Q ss_pred EEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352 110 CCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (357)
Q Consensus 110 ~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~pd~~~i 152 (357)
..+|.=-| +.... -...++..++++|+|||.+.+.|-+.+..
T Consensus 93 ~i~FPDPW-pK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~ 139 (195)
T PF02390_consen 93 YINFPDPW-PKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA 139 (195)
T ss_dssp EEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred EEeCCCCC-cccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 98885443 21111 12469999999999999998888776443
No 134
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.89 E-value=2.7e-08 Score=94.27 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
...+||+||||+|+.+..+++.. ..+++++|+++++++.|++.+.... ...+++++.+|... + +....++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~--~---l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK--F---LADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH--H---HHhCCCCc
Confidence 44699999999998887777664 6789999999999999998765421 12356777777643 1 11124789
Q ss_pred cEEEEccchhhccCCHHH--HHHHHHHHHhcccCCcEEEEEeCC
Q 018352 107 DLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~--~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
|+|++....+. ..... ...+++++++.|+|||+++....+
T Consensus 147 DvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 147 DVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred cEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 99998654222 11111 467899999999999999987443
No 135
>PLN02366 spermidine synthase
Probab=98.89 E-value=1.3e-08 Score=98.10 Aligned_cols=112 Identities=11% Similarity=0.030 Sum_probs=81.5
Q ss_pred CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
+...+||+||||.|+.+..+++.+ ..+++.+||++.+++.|++.+.... ...+++++.+|+...- ... ..++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l--~~~--~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL--KNA--PEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH--hhc--cCCC
Confidence 456899999999999888887764 5789999999999999999875421 1347899999975411 100 2468
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
||+|++-..-+......--.+.+++.+.++|+|||+++..
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9999986543331111112467899999999999999764
No 136
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.88 E-value=1.4e-08 Score=94.25 Aligned_cols=96 Identities=26% Similarity=0.291 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
...+|||||+|.|..+..+++. +..+++..|+ ++.++.+++ . .+++++.+|.+ .++ + . +|+|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----~rv~~~~gd~f-~~~------P-~-~D~~ 162 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----DRVEFVPGDFF-DPL------P-V-ADVY 162 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----TTEEEEES-TT-TCC------S-S-ESEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----cccccccccHH-hhh------c-c-ccce
Confidence 5578999999999988888776 5669999999 778888877 2 27999999998 555 3 4 9999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCC--cEEEEE
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI 145 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpG--G~fi~t 145 (357)
++...+|. + +.++..++|+++++.|+|| |++++.
T Consensus 163 ~l~~vLh~-~-~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRHVLHD-W-SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEESSGGG-S--HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeehhhhh-c-chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 99999998 6 6788999999999999999 999877
No 137
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.88 E-value=2.2e-08 Score=95.54 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=79.5
Q ss_pred CCEEEEECCCCChhHHHHHH----h-----cCCeEEEEeCChHHHHHHHHHh-H-----h-----------c------C-
Q 018352 32 YVTVCDLYCGAGVDVDKWET----A-----LIANYIGIDVATSGIGEARDTW-E-----N-----------Q------R- 78 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~----~-----~~~~v~GiDiS~~~l~~A~~r~-~-----~-----------~------~- 78 (357)
..+|+..||++|.....++- . ...+|+|+|||+.+|+.|++-. . . . +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 47999999999975543322 1 1247999999999999998721 1 0 0 0
Q ss_pred ------CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 79 ------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 79 ------~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
....+.|.+.|+...++. ..+.||+|+|.+++.| | +.+..+++++++++.|+|||+|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliy-F-~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIY-F-DKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhc-C-CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 112468888888764431 2478999999999999 7 6677899999999999999988755
No 138
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.87 E-value=1.4e-08 Score=92.66 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=73.1
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
+.++.+|||||||+|..+.-++.. +...|+++|+.+..++.|+++++..+.. ++.++++|.....- ...+|
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~------~~apf 142 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP------EEAPF 142 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG------GG-SE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc------cCCCc
Confidence 568999999999999766665554 3457999999999999999999875433 78999999754221 24689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|.|++..+... . . ..+.+.|++||++++-.-
T Consensus 143 D~I~v~~a~~~----i--p----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVPE----I--P----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccch----H--H----HHHHHhcCCCcEEEEEEc
Confidence 99999885433 1 2 335568999999998744
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=98.85 E-value=1.2e-08 Score=94.17 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=71.3
Q ss_pred CCEEEEECCCCChhHHHHHHh----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 32 YVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
+.+|||+|||+|..+..++.. +..+++|+|+++.+++.|++... ++.++.+|+....+ +++||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-------~~~FD 116 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-------DTLFD 116 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-------cCCcc
Confidence 679999999999877766553 34589999999999999997653 47889999875433 36899
Q ss_pred EEEEccchhhcc--------CCHHHHHHHHHHHHhcccCCcE
Q 018352 108 LVCCFQHLQMCF--------ETEERARRLLQNVSSLLKPGGY 141 (357)
Q Consensus 108 lV~~~~~lh~~f--------es~~~~~~~L~~i~~~LkpGG~ 141 (357)
+|+++--++-.- ....-...++..+.+++++|+.
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999986544210 0112356688888887777764
No 140
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.85 E-value=4e-08 Score=89.06 Aligned_cols=107 Identities=7% Similarity=-0.008 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||+|||+|.....++.....+++++|+++.+++.|++.++..+.. ++.++++|+... + .....+||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~-l----~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSF-L----AQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHH-H----hhcCCCceEEE
Confidence 56799999999998777665666679999999999999999988776543 688999997531 1 11235799999
Q ss_pred EccchhhccCCHHHHHHHHHHHH--hcccCCcEEEEEeCC
Q 018352 111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD 148 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~--~~LkpGG~fi~t~pd 148 (357)
+.--++.- -...+++.+. .+|+|+|++++....
T Consensus 127 ~DPPy~~g-----~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 127 VDPPFRKG-----LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ECCCCCCC-----hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 98764331 1233445444 458999999888554
No 141
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.83 E-value=1.2e-08 Score=92.75 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
..+.||+|||-|+.+..++..-+.+|..+|..+..++.|++...... ..-.++++.-+.+ +. + ..++||+|+|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~--f~---P-~~~~YDlIW~ 128 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQD--FT---P-EEGKYDLIWI 128 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----------TT-EEEEEE
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhh--cc---C-CCCcEeEEEe
Confidence 46899999999999988877778899999999999999998765421 1134566665433 21 1 3479999999
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+++-| + +.++..++|+++...|+|+|.+++-
T Consensus 129 QW~lgh-L-TD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 129 QWCLGH-L-TDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ES-GGG-S--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHhhcc-C-CHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 999988 5 7888999999999999999988765
No 142
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.83 E-value=7.3e-08 Score=90.96 Aligned_cols=130 Identities=21% Similarity=0.278 Sum_probs=92.3
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHH----hc------CCeEEEEeCChHHHHHHHHH-hH-
Q 018352 8 RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWET----AL------IANYIGIDVATSGIGEARDT-WE- 75 (357)
Q Consensus 8 r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~----~~------~~~v~GiDiS~~~l~~A~~r-~~- 75 (357)
|...+..-+.+-+...|+..-.....+|+-.||++|.-...++- .. ..+|+|+|||..+|+.|+.- |.
T Consensus 73 R~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~ 152 (268)
T COG1352 73 RDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPS 152 (268)
T ss_pred cCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCCh
Confidence 33444444556666656554333467999999999975443321 11 35899999999999999861 11
Q ss_pred -----h-------c-------C-------CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHH
Q 018352 76 -----N-------Q-------R-------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLL 129 (357)
Q Consensus 76 -----~-------~-------~-------~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L 129 (357)
+ . + ....+.|...|+..... ..+.||+|+|-++|-| | +.+...+++
T Consensus 153 ~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~------~~~~fD~IfCRNVLIY-F-d~~~q~~il 224 (268)
T COG1352 153 RELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP------FLGKFDLIFCRNVLIY-F-DEETQERIL 224 (268)
T ss_pred hHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc------ccCCCCEEEEcceEEe-e-CHHHHHHHH
Confidence 0 0 0 12246788888877663 2478999999999999 7 677788999
Q ss_pred HHHHhcccCCcEEEEE
Q 018352 130 QNVSSLLKPGGYFLGI 145 (357)
Q Consensus 130 ~~i~~~LkpGG~fi~t 145 (357)
+..+..|+|||++++-
T Consensus 225 ~~f~~~L~~gG~LflG 240 (268)
T COG1352 225 RRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHhCCCCEEEEc
Confidence 9999999999998855
No 143
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.82 E-value=4.7e-08 Score=96.78 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=95.4
Q ss_pred HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCC-CceeEEEEcCCCCCchhhhhhhc
Q 018352 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEK 102 (357)
Q Consensus 24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~-~~~v~f~~~D~~~~~~~~~l~~~ 102 (357)
.+..++. +.+|||+.|=||+++...+..+.+++|+||+|..+|+.|+++++-++. ..++.|+++|++. +.......
T Consensus 211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~--~l~~~~~~ 287 (393)
T COG1092 211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK--WLRKAERR 287 (393)
T ss_pred HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH--HHHHHHhc
Confidence 3455555 899999999999999999888988999999999999999999988765 3357899999866 32233334
Q ss_pred CCcccEEEEcc---c--hhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 103 ANQADLVCCFQ---H--LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 103 ~~~FDlV~~~~---~--lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
..+||+|++-- + -...|.-..+...++..+.++|+|||+++.++...
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 56999999732 1 11113334567789999999999999999887665
No 144
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.79 E-value=1.6e-07 Score=90.84 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=82.4
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhH-hcCCCceeEEEEcCCCCCchhhhhhh-
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQE- 101 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~-~~~~~~~v~f~~~D~~~~~~~~~l~~- 101 (357)
++++..|+|+|||.|.-+..++.+ ....|+++|||.++|+.+.++.. ..-....+.-+++|....-. .++.
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~--~l~~~ 151 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA--WLKRP 151 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh--hcccc
Confidence 456779999999999765544443 24589999999999999999987 32112234447777644211 1110
Q ss_pred -cCCcccEEEEcc-chhhccCCHHHHHHHHHHHHh-cccCCcEEEEE---eCCchHHHHHH
Q 018352 102 -KANQADLVCCFQ-HLQMCFETEERARRLLQNVSS-LLKPGGYFLGI---TPDSSTIWAKY 156 (357)
Q Consensus 102 -~~~~FDlV~~~~-~lh~~fes~~~~~~~L~~i~~-~LkpGG~fi~t---~pd~~~i~~~~ 156 (357)
......+|+... ++.+ | +.+.+..+|+++++ .|+|||.|++. .-+.+.|...|
T Consensus 152 ~~~~~~r~~~flGSsiGN-f-~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY 210 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGN-F-SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAY 210 (319)
T ss_pred cccCCccEEEEeCccccC-C-CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHh
Confidence 123456666544 6777 6 56778999999999 99999988765 23334444444
No 145
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=8.2e-08 Score=88.85 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=93.0
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
+.++.+|||.|.|+|..+..++.. +.++|+.+|+-++..+.|+++++......++++..+|+.+... ...|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v 164 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV 164 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence 458999999999999777776654 5689999999999999999999886655568889999887544 3489
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~ 157 (357)
|+|+. +..++-.++.+++++|||||.+++-.|+.+.+.+-+.
T Consensus 165 Dav~L---------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~ 206 (256)
T COG2519 165 DAVFL---------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE 206 (256)
T ss_pred CEEEE---------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence 99864 3345778899999999999999999999987765544
No 146
>PRK03612 spermidine synthase; Provisional
Probab=98.76 E-value=5.1e-08 Score=100.59 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=80.4
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcC-CeEEEEeCChHHHHHHHHH--hHhc---C-CCceeEEEEcCCCCCchhhhhhhc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDT--WENQ---R-KNFIAEFFEADPCAENFETQMQEK 102 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r--~~~~---~-~~~~v~f~~~D~~~~~~~~~l~~~ 102 (357)
++..+|||||||+|..+..+++.+. .+++++|+++++++.|++. +... . ...+++++.+|+.. + +...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~---l~~~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--W---LRKL 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--H---HHhC
Confidence 4567999999999988888877654 7999999999999999983 3221 1 12368899999754 1 1113
Q ss_pred CCcccEEEEccchhhccC-CHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 103 ANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 103 ~~~FDlV~~~~~lh~~fe-s~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
.++||+|++....+.... ..--.+++++.+.+.|+|||.+++..
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 468999999764332100 00113568999999999999999874
No 147
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.76 E-value=1e-07 Score=96.57 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++.+|||+|||+|..+..++... .+++|+|+|++|++.|+++.+.++.. +++|+++|+.... ......+++||+|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l--~~~~~~~~~fD~V 371 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDF--TDQPWALGGFDKV 371 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhh--hhhhhhcCCCCEE
Confidence 467899999999998877776554 69999999999999999988766443 6899999985421 1000124679999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~ 156 (357)
++.-.-.- ....++.+.+ ++|++++++++ |...+.+-+
T Consensus 372 i~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl 409 (443)
T PRK13168 372 LLDPPRAG-------AAEVMQALAK-LGPKRIVYVSC-NPATLARDA 409 (443)
T ss_pred EECcCCcC-------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccH
Confidence 87652111 2234555555 68888766664 655554444
No 148
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.2e-08 Score=86.96 Aligned_cols=73 Identities=23% Similarity=0.137 Sum_probs=62.5
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
.+.+|+|+|||||.+....+..+..+|+|+|+++++++.|++..... .-+++|+++|+.. + ...||.|+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~--~-------~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSD--F-------RGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhh--c-------CCccceEE
Confidence 56789999999998888887789899999999999999999998763 4479999999976 2 47899998
Q ss_pred Eccc
Q 018352 111 CFQH 114 (357)
Q Consensus 111 ~~~~ 114 (357)
++--
T Consensus 114 mNPP 117 (198)
T COG2263 114 MNPP 117 (198)
T ss_pred ECCC
Confidence 8753
No 149
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.75 E-value=1.1e-07 Score=90.53 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=83.9
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.+.+|||+-|=+|++....+..+..++++||.|..+|+.|++.+.-++.. .+++|++.|+.. +...+. ..++||+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~--~l~~~~-~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK--FLKRLK-KGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH--HHHHHH-HTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH--HHHHHh-cCCCCCEE
Confidence 47899999999999999888888889999999999999999999877653 478999999865 222232 34699999
Q ss_pred EEc---cchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 110 CCF---QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 110 ~~~---~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
++- |+-. .|.-..+...+++.+.++|+|||.++.++.+.
T Consensus 200 IlDPPsF~k~-~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 200 ILDPPSFAKS-KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EE--SSEESS-TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred EECCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 983 2211 13224567789999999999999998776554
No 150
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.74 E-value=6.5e-08 Score=93.10 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=82.0
Q ss_pred cCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 28 ~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.+-.+..|||+|||+|-.....++++..+|+|+|.|.-+ +.|++..+.++...-++++++.+.+..+ +..+.|
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------P~eKVD 129 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------PVEKVD 129 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------Ccccee
Confidence 344688999999999966666667788999999999766 9999999988777779999999877655 458999
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
+|++-+.=++.+ .+.-...+|-.=-+.|+|||.++
T Consensus 130 iIvSEWMGy~Ll-~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 130 IIVSEWMGYFLL-YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEeehhhhHHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence 998865322222 23344555555568999999875
No 151
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.5e-07 Score=85.15 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=79.3
Q ss_pred HHHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352 23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (357)
Q Consensus 23 ~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~ 101 (357)
.+++.. ..++.+|||||||+|..+.-+++.. .+|+.+|+.++..+.|+++++..+.. ++.+.++|...---
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~------ 134 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP------ 134 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC------
Confidence 334433 3588999999999996665554443 39999999999999999999887653 59999999865321
Q ss_pred cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
...+||.|++..+.-. . + +.+.+.||+||++++-.-
T Consensus 135 ~~aPyD~I~Vtaaa~~----v--P----~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPE----V--P----EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCC----C--C----HHHHHhcccCCEEEEEEc
Confidence 3478999998874333 1 2 334568999999997744
No 152
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.72 E-value=4.5e-08 Score=89.10 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc--CCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~--~~~F 106 (357)
...+||+|||++|..+..++.. ..++|+.+|++++..+.|++.++..+...+++++.+|+.. ....+... .++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--VLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--HHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--hHHHHHhccCCCce
Confidence 4579999999999777777765 3579999999999999999998876666689999999854 21222211 3689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+|++-.. ..+...++..+.++|+|||.+++.
T Consensus 123 D~VFiDa~-------K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 123 DFVFIDAD-------KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEEEST-------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccc-------ccchhhHHHHHhhhccCCeEEEEc
Confidence 99987652 334566788888999999999988
No 153
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.72 E-value=2.3e-07 Score=83.36 Aligned_cols=113 Identities=8% Similarity=-0.006 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
.+.+|||++||+|.....++..+..+++++|+++.+++.+++..+..+...+++++.+|+... + ..+......||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l-~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-L-KFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-H-HHhhccCCCceEEE
Confidence 478999999999998888888887899999999999999999887765544688999998431 1 11111123488888
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
.--.+.. ...+..-..+.+ ..+|+++|.+++..+.
T Consensus 127 ~DPPy~~--~~~~~~l~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 127 LDPPFFN--GALQALLELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred ECcCCCC--CcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence 7553322 112222223322 4579999998887655
No 154
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=7.6e-08 Score=88.16 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC-Ccee--EEEEcC--------------CC-
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK-NFIA--EFFEAD--------------PC- 91 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~-~~~v--~f~~~D--------------~~- 91 (357)
.+..+|||||-.|..+..+++. +...++|+||++..|+.|++..+.... ...+ .|.+.+ ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3578999999999777777665 667899999999999999987643100 0000 000000 00
Q ss_pred CCch---------------hhhhhhcCCcccEEEEccc---hhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 92 AENF---------------ETQMQEKANQADLVCCFQH---LQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 92 ~~~~---------------~~~l~~~~~~FDlV~~~~~---lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+..+ .+-+......||+|+|... +|-=+ +.+-++++++.++++|.|||+|++-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNw-gD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNW-GDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccc-ccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 0011113468999999654 33212 4677999999999999999999876
No 155
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.71 E-value=5e-07 Score=85.20 Aligned_cols=112 Identities=19% Similarity=0.221 Sum_probs=91.4
Q ss_pred CCCEEEEECCCCChhHHHHHHh-c--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
...+||||+||.|+.+.-.+.. + ...+...|.|+..++..++.+++.+...-++|.++|+++..- +....-..|
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~---l~~l~p~P~ 211 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS---LAALDPAPT 211 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH---hhccCCCCC
Confidence 4579999999999887766554 2 368999999999999999999988777667999999987432 221234678
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
++++...+.+ |.+.+-.++.++.+++++.|||++|-|.
T Consensus 212 l~iVsGL~El-F~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 212 LAIVSGLYEL-FPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEEEecchhh-CCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 9888776666 8887888899999999999999999994
No 156
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.1e-08 Score=92.97 Aligned_cols=111 Identities=21% Similarity=0.309 Sum_probs=91.7
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
....++|||||.|.....+...+..+++-+|.|-.|++.|+..-. . ...+...++|-...++ +.+++|+|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p--~i~~~~~v~DEE~Ldf------~ens~DLii 142 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-P--SIETSYFVGDEEFLDF------KENSVDLII 142 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-C--ceEEEEEecchhcccc------cccchhhhh
Confidence 456899999999988888888889999999999999999876422 2 2356677888777666 679999999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~ 154 (357)
+..++|| ..+....+..+...|||+|.||+.....+.+++
T Consensus 143 sSlslHW----~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 143 SSLSLHW----TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred hhhhhhh----hccCchHHHHHHHhcCCCccchhHHhccccHHH
Confidence 9999999 345667788999999999999999888877754
No 157
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=4.2e-07 Score=84.76 Aligned_cols=149 Identities=16% Similarity=0.100 Sum_probs=98.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCce
Q 018352 4 LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFI 82 (357)
Q Consensus 4 ~~~~r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~ 82 (357)
+|.+-+|... .||-..+-+.-...+..+||+|||+|..+..++.. +.+.++++|.|+.+|..|.++.........
T Consensus 125 IPRpETEE~V----~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~ 200 (328)
T KOG2904|consen 125 IPRPETEEWV----EAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGR 200 (328)
T ss_pred ecCccHHHHH----HHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence 4444444433 33333333333335568999999999877777665 677999999999999999998877666557
Q ss_pred eEEEEcCCCCCchhhhhhhcCCcccEEEEccchhh----------------------ccCCHHHHHHHHHHHHhcccCCc
Q 018352 83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQM----------------------CFETEERARRLLQNVSSLLKPGG 140 (357)
Q Consensus 83 v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~----------------------~fes~~~~~~~L~~i~~~LkpGG 140 (357)
+..++.+.....++.. ....++.|+++|+--.-. -.+..+.+..++.-+.|.|+|||
T Consensus 201 i~v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg 279 (328)
T KOG2904|consen 201 IEVIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG 279 (328)
T ss_pred eEEEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence 7777666555444321 114588999998642110 01112234668888999999999
Q ss_pred EEEEEe---CCchHHHHHHH
Q 018352 141 YFLGIT---PDSSTIWAKYQ 157 (357)
Q Consensus 141 ~fi~t~---pd~~~i~~~~~ 157 (357)
.+.+.. +....+.+.+.
T Consensus 280 ~~~le~~~~~~~~~lv~~~m 299 (328)
T KOG2904|consen 280 FEQLELVERKEHSYLVRIWM 299 (328)
T ss_pred eEEEEecccccCcHHHHHHH
Confidence 998874 45566665554
No 158
>PLN02476 O-methyltransferase
Probab=98.70 E-value=1.9e-07 Score=88.67 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~~F 106 (357)
+..+|||||||+|..+..++.. ..++++.+|.+++.++.|++.++..+...+++++.+|+... + ..+. ...++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-L-~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-L-KSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-H-HHHHhcccCCCC
Confidence 4679999999999777766654 35689999999999999999998877766899999998542 1 1111 113689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+|+.-. ...+...+++.+.++|+|||.+++.
T Consensus 196 D~VFIDa-------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDA-------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECC-------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9997654 3456778899999999999999876
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=87.60 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=91.0
Q ss_pred CEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
..+||||||.|..+..+++. +-..++|||+....+..|.+++...+.. |+.+++.|+.. +.+.+. ++++.|-|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~--~l~~~~-~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVE--VLDYLI-PDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHH--HHHhcC-CCCCeeEEEE
Confidence 48999999999999998887 5568999999999999999999877544 88999999855 222222 3569999999
Q ss_pred ccchhhccCCHHH-----HHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352 112 FQHLQMCFETEER-----ARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (357)
Q Consensus 112 ~~~lh~~fes~~~-----~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~ 154 (357)
+|.=-| +..... ...+++.+++.|+|||.|.+.|-+.+....
T Consensus 126 ~FPDPW-pKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 126 NFPDPW-PKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred ECCCCC-CCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 886554 322111 246999999999999999999888755444
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.67 E-value=3e-07 Score=81.50 Aligned_cols=112 Identities=19% Similarity=0.049 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
.++.+|||||||+|-.....+.. +..+|+.+|.++ .++.++...+.+. ...++.+...|-........+ ...+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSB
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccC
Confidence 36789999999999655555555 577999999999 9998888877654 334677777776542211112 24689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
|+|++.-++.. .+....+++.+.++|+++|.+++..+.
T Consensus 121 D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99999887665 456778899999999999987777543
No 161
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.66 E-value=3.8e-07 Score=85.18 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=89.2
Q ss_pred cCCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 28 ~~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
-+.|+.+|||.|.|+|..+..++.. +.++|+..|+.++.++.|++.++..+...++.+.+.|+....+... ....
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~---~~~~ 113 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE---LESD 113 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TTS
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---ccCc
Confidence 3569999999999999888887765 6679999999999999999999988776689999999976555211 1368
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcc-cCCcEEEEEeCCchHHHHHHH
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGITPDSSTIWAKYQ 157 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~L-kpGG~fi~t~pd~~~i~~~~~ 157 (357)
+|.|+.-. .++-.++..+.++| |+||++++-.|+-+.+.+-..
T Consensus 114 ~DavfLDl---------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~ 157 (247)
T PF08704_consen 114 FDAVFLDL---------PDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVE 157 (247)
T ss_dssp EEEEEEES---------SSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHH
T ss_pred ccEEEEeC---------CCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHH
Confidence 99996543 23445688999999 899999999999987766554
No 162
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.65 E-value=1.1e-07 Score=89.11 Aligned_cols=128 Identities=21% Similarity=0.178 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCC---CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcC------------
Q 018352 16 LYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQR------------ 78 (357)
Q Consensus 16 ~~nwvks~Li~~~~~---~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~------------ 78 (357)
+..|....+-+.+.+ .+.++||||||.- +...+.+ .+.+++..|.++..++..++-.+...
T Consensus 38 ~~~~~L~~l~~~f~~g~~~g~~llDiGsGPt--iy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~ 115 (256)
T PF01234_consen 38 ILLFFLKNLHETFSSGGVKGETLLDIGSGPT--IYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVC 115 (256)
T ss_dssp HHHHHHHHHHHHHHTSSS-EEEEEEES-TT----GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHH
T ss_pred hHHHHHHHHHHHhCccCcCCCEEEEeCCCcH--HHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHH
Confidence 445555555555553 4679999999984 3222222 45689999999999987766443210
Q ss_pred ----C-----------Ccee-EEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEE
Q 018352 79 ----K-----------NFIA-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (357)
Q Consensus 79 ----~-----------~~~v-~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~f 142 (357)
. ...+ .++.+|++..+-.......+.+||+|++.+++..+-.+.+..+++++|+.++|||||.|
T Consensus 116 ~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~L 195 (256)
T PF01234_consen 116 ELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHL 195 (256)
T ss_dssp HHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEE
T ss_pred hccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEE
Confidence 0 0012 46788887754321100012469999999999999999999999999999999999999
Q ss_pred EEE
Q 018352 143 LGI 145 (357)
Q Consensus 143 i~t 145 (357)
++.
T Consensus 196 il~ 198 (256)
T PF01234_consen 196 ILA 198 (256)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 163
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.63 E-value=1.8e-07 Score=86.44 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=74.7
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEE
Q 018352 8 RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE 87 (357)
Q Consensus 8 r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~ 87 (357)
|-++|..++..|++.. +....|.|+|||.+..+ ......|..+|+-+. +-.++.
T Consensus 163 WP~nPld~ii~~ik~r------~~~~vIaD~GCGEakiA----~~~~~kV~SfDL~a~----------------~~~V~~ 216 (325)
T KOG3045|consen 163 WPENPLDVIIRKIKRR------PKNIVIADFGCGEAKIA----SSERHKVHSFDLVAV----------------NERVIA 216 (325)
T ss_pred CCCChHHHHHHHHHhC------cCceEEEecccchhhhh----hccccceeeeeeecC----------------CCceee
Confidence 4445555555554432 56789999999999443 344557899998632 345689
Q ss_pred cCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 88 ~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+|+...++ .+++.|++++..+|.- .+...+++++.|+|++||.+.+.-
T Consensus 217 cDm~~vPl------~d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 217 CDMRNVPL------EDESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred ccccCCcC------ccCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEe
Confidence 99999888 6799999887655432 357789999999999999999883
No 164
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.63 E-value=1.3e-07 Score=91.53 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||+|||+|..+..++..+ .+++|+|+|+.|++.|++..+.++. .+++|+++|+..... ...++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~-----~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT-----AQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH-----hcCCCCeEEE
Confidence 45899999999998888777654 6999999999999999999877655 369999999854221 0235799999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~ 156 (357)
+.-.-.- . .... ++.+ ..++|+++++ ..+|...+.+-+
T Consensus 246 ~dPPr~G-~--~~~~---~~~l-~~~~~~~ivy-vsc~p~t~~rd~ 283 (315)
T PRK03522 246 VNPPRRG-I--GKEL---CDYL-SQMAPRFILY-SSCNAQTMAKDL 283 (315)
T ss_pred ECCCCCC-c--cHHH---HHHH-HHcCCCeEEE-EECCcccchhHH
Confidence 8743110 1 1122 2222 2356765544 445555554433
No 165
>PLN02672 methionine S-methyltransferase
Probab=98.61 E-value=3e-07 Score=100.98 Aligned_cols=112 Identities=18% Similarity=0.108 Sum_probs=80.4
Q ss_pred CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC---------------CceeEEEEcCCCCCch
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK---------------NFIAEFFEADPCAENF 95 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~---------------~~~v~f~~~D~~~~~~ 95 (357)
+.+|||+|||+|.....++.. +..+++|+|+|+.+++.|+++.+.+.. ..+++|+++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999888877765 446999999999999999998875421 1368999999865321
Q ss_pred hhhhhhcCCcccEEEEccch------h---------------h------cc-------CCHHHHHHHHHHHHhcccCCcE
Q 018352 96 ETQMQEKANQADLVCCFQHL------Q---------------M------CF-------ETEERARRLLQNVSSLLKPGGY 141 (357)
Q Consensus 96 ~~~l~~~~~~FDlV~~~~~l------h---------------~------~f-------es~~~~~~~L~~i~~~LkpGG~ 141 (357)
....+||+|+++--. . | ++ ....-.++++.++.++|+|||.
T Consensus 199 -----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 199 -----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred -----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 012369999985421 0 0 00 0112347889999999999999
Q ss_pred EEEEeCC
Q 018352 142 FLGITPD 148 (357)
Q Consensus 142 fi~t~pd 148 (357)
+++-+-.
T Consensus 274 l~lEiG~ 280 (1082)
T PLN02672 274 MIFNMGG 280 (1082)
T ss_pred EEEEECc
Confidence 9987543
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.61 E-value=5.3e-07 Score=87.31 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=65.9
Q ss_pred HHHHHHHHHH---cCC--CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhc-CCCceeEEEE-cC
Q 018352 18 EFAKTALIKI---YSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFE-AD 89 (357)
Q Consensus 18 nwvks~Li~~---~~~--~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~-~~~~~v~f~~-~D 89 (357)
.|+...|... .++ ...+|||||||+|.....+... ...+++|+||++.+++.|++..+.+ +...++.+.. .|
T Consensus 96 ~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~ 175 (321)
T PRK11727 96 HHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKD 175 (321)
T ss_pred HHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccc
Confidence 5665554332 222 4679999999999665555443 4568999999999999999999877 5655677754 33
Q ss_pred CCCCchhhhhhhcCCcccEEEEccchhh
Q 018352 90 PCAENFETQMQEKANQADLVCCFQHLQM 117 (357)
Q Consensus 90 ~~~~~~~~~l~~~~~~FDlV~~~~~lh~ 117 (357)
... +...+....+.||+|+|+--+|-
T Consensus 176 ~~~--i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 176 SKA--IFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred hhh--hhhcccccCCceEEEEeCCCCcC
Confidence 221 11111113468999999987765
No 167
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.60 E-value=1.4e-07 Score=87.67 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=69.0
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
..++||||.|.|+.+..+ ..-+.+|+++++|..|....+ .++ .+.+ |+.+ .. ..+.+||+|+|
T Consensus 95 ~~~lLDlGAGdG~VT~~l-~~~f~~v~aTE~S~~Mr~rL~----~kg----~~vl--~~~~--w~----~~~~~fDvIsc 157 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERL-APLFKEVYATEASPPMRWRLS----KKG----FTVL--DIDD--WQ----QTDFKFDVISC 157 (265)
T ss_pred CCceEEecCCCcHHHHHH-HhhcceEEeecCCHHHHHHHH----hCC----CeEE--ehhh--hh----ccCCceEEEee
Confidence 457999999999888887 446778999999999965433 331 2223 2222 11 13468999999
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.+.+.-+. ++..+|+.+++.|+|+|++++.
T Consensus 158 LNvLDRc~----~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNVLDRCD----RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhhhccC----CHHHHHHHHHHHhCCCCEEEEE
Confidence 99776643 5788999999999999999876
No 168
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.56 E-value=3.3e-07 Score=82.77 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=65.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEE
Q 018352 7 PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFF 86 (357)
Q Consensus 7 ~r~~~p~~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~ 86 (357)
.|-.+|...+.+|++ ..++...|.|+|||.+..+... . ....|...|+-.. +-.++
T Consensus 54 ~WP~nPvd~iI~~l~------~~~~~~viaD~GCGdA~la~~~-~-~~~~V~SfDLva~----------------n~~Vt 109 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLK------KRPKSLVIADFGCGDAKLAKAV-P-NKHKVHSFDLVAP----------------NPRVT 109 (219)
T ss_dssp TSSS-HHHHHHHHHC------TS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S----------------STTEE
T ss_pred cCCCCcHHHHHHHHH------hcCCCEEEEECCCchHHHHHhc-c-cCceEEEeeccCC----------------CCCEE
Confidence 455666666666655 1245679999999999555332 2 2236999998632 12368
Q ss_pred EcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 87 ~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
.+|+...++ ++++.|+|++..+|.. .+...+++++.|+|||||.+.+.-..
T Consensus 110 acdia~vPL------~~~svDv~VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 110 ACDIANVPL------EDESVDVAVFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ES-TTS-S--------TT-EEEEEEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EecCccCcC------CCCceeEEEEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEec
Confidence 899999888 6799999988776544 24678999999999999999988433
No 169
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.54 E-value=6.8e-07 Score=85.79 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=62.8
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..++.+|||||||+|..+..++.. ..+++|+|+++.+++.+++++...+...+++++++|+...++ ..||+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--------~~~d~ 104 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--------PYFDV 104 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--------cccCE
Confidence 457889999999999887777665 458999999999999999988754333478999999976443 46899
Q ss_pred EEEccchhh
Q 018352 109 VCCFQHLQM 117 (357)
Q Consensus 109 V~~~~~lh~ 117 (357)
|+++...+.
T Consensus 105 VvaNlPY~I 113 (294)
T PTZ00338 105 CVANVPYQI 113 (294)
T ss_pred EEecCCccc
Confidence 987654443
No 170
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.53 E-value=1.7e-06 Score=77.13 Aligned_cols=112 Identities=20% Similarity=0.270 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCCChhHHHHHHh--cCC--------eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA--LIA--------NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM 99 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~--------~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l 99 (357)
.++..|||-.||+|..+...+.. ... +++|+|+++.+++.|+++.+..+....+.+.+.|+...++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~---- 102 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL---- 102 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG----
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc----
Confidence 46789999999999888765443 222 3899999999999999999877666678999999987664
Q ss_pred hhcCCcccEEEEccchhhccCC----HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 100 QEKANQADLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 100 ~~~~~~FDlV~~~~~lh~~fes----~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
.++++|+|+++--.-.-..+ .+-.+.+++++.++|++ ..+++++.+
T Consensus 103 --~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~ 152 (179)
T PF01170_consen 103 --PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN 152 (179)
T ss_dssp --TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred --ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence 46799999997543322222 23345778999999999 444444443
No 171
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.53 E-value=1.1e-06 Score=83.41 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=58.6
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++.+|||+|||+|..+..++.... +++|+|+++.|++.++++... .+++++++|+...++. +..+|.|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~------~~~~~~v 109 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS------ELQPLKV 109 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH------HcCcceE
Confidence 4678999999999988888877654 999999999999999887643 2789999999876552 1125888
Q ss_pred EEccc
Q 018352 110 CCFQH 114 (357)
Q Consensus 110 ~~~~~ 114 (357)
+++..
T Consensus 110 v~NlP 114 (272)
T PRK00274 110 VANLP 114 (272)
T ss_pred EEeCC
Confidence 77654
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.53 E-value=7.4e-07 Score=81.63 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEE-cCCCCCchhhhhhhcCCccc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~-~D~~~~~~~~~l~~~~~~FD 107 (357)
...+|||||.+.|..+..++.. + ..+++.+|+++++.+.|++.++..+...++..+. +|+... +.. ...++||
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l~~---~~~~~fD 134 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-LSR---LLDGSFD 134 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-HHh---ccCCCcc
Confidence 5679999999999666655554 3 5689999999999999999999877766788888 465431 111 1368999
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|++.. ...+...++..+.++|+|||.+++.
T Consensus 135 liFIDa-------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDA-------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 997655 4556678999999999999999987
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.53 E-value=8.9e-07 Score=83.36 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=61.9
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..++.+|||||||+|..+..+++. ..+++|+|+++.+++.++++.... .+++++++|+...++ ..||.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~--------~~~d~ 94 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL--------PEFNK 94 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc--------hhceE
Confidence 346789999999999888888776 458999999999999999887542 268999999977554 34899
Q ss_pred EEEccchhh
Q 018352 109 VCCFQHLQM 117 (357)
Q Consensus 109 V~~~~~lh~ 117 (357)
|+++...+.
T Consensus 95 Vv~NlPy~i 103 (258)
T PRK14896 95 VVSNLPYQI 103 (258)
T ss_pred EEEcCCccc
Confidence 998776543
No 174
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.52 E-value=7.4e-07 Score=79.77 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352 16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95 (357)
Q Consensus 16 ~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~ 95 (357)
+.||+.... -++.+||||.||+|......+.++..+++.||.+..+++..++.++..+...++..+..|+.. +
T Consensus 32 lFniL~~~~-----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~--~ 104 (183)
T PF03602_consen 32 LFNILQPRN-----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK--F 104 (183)
T ss_dssp HHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH--H
T ss_pred HHHHhcccc-----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH--H
Confidence 456655431 257899999999999888888889999999999999999999998876655568888888643 2
Q ss_pred hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHH--hcccCCcEEEEEeCCc
Q 018352 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDS 149 (357)
Q Consensus 96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~--~~LkpGG~fi~t~pd~ 149 (357)
...+.....+||+|.+---... .. ....++..+. .+|+++|.+++-....
T Consensus 105 l~~~~~~~~~fDiIflDPPY~~---~~-~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPYAK---GL-YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHCTS-EEEEEE--STTS---CH-HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHhhcccCCCceEEEECCCccc---ch-HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 1222224689999988764443 11 1355666666 8999999999886554
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.51 E-value=1.1e-06 Score=88.96 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCEEEEECCCCChhHHHHHHhc-----CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 32 YVTVCDLYCGAGVDVDKWETAL-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~-----~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
+..|||+|||+|-.....++++ ..+|++|+-++.++...+++.+.++...+++++++|+..... +.+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence 4689999999996665555543 569999999999998888887766666689999999988766 4689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
|+|++=. |-+ |-..+-..+.|....+.|||||++|
T Consensus 260 DIIVSEl-LGs-fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 260 DIIVSEL-LGS-FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEE----BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEec-cCC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence 9998732 122 2122234456888899999999886
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.47 E-value=1.8e-06 Score=80.75 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh---cCCc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ 105 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~---~~~~ 105 (357)
+..+||+||+++|..+..++.. ..++++.+|++++..+.|++.++..+...+++++.+|+... + ..+.. ..++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L-~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-L-DQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-H-HHHHhccccCCc
Confidence 3569999999999766666554 35699999999999999999998877667899999997541 1 11111 1368
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
||+|++-. +......++..+.++|+|||.+++.
T Consensus 157 fD~iFiDa-------dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDA-------DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecC-------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99997654 2445667888888999999998876
No 177
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=8.1e-07 Score=85.96 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=85.7
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc-CCCCCchhhhhhhcCCccc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQAD 107 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~-D~~~~~~~~~l~~~~~~FD 107 (357)
+.+|..|||==||||+.+......+. +++|+|++..|++-|+.+.+..+.. ...+... |++..++ ...+||
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl------~~~~vd 266 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPL------RDNSVD 266 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCC------CCCccc
Confidence 45788999999999999988766665 9999999999999999988765422 3444544 9988887 456799
Q ss_pred EEEEccchhhc----cC-CHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 108 LVCCFQHLQMC----FE-TEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 108 lV~~~~~lh~~----fe-s~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
.|.|---.--. -+ -.+-..++|+.++++||+||++++..|.
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~ 312 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR 312 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 99985422110 01 1345788999999999999999999883
No 178
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.46 E-value=1.7e-06 Score=82.66 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=83.2
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
.+..|||+|||.|......++++.++|++++.| +|.+.|++..+.+....++.++.+.+.+..+ +++.|+|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-------PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-------chhccEEE
Confidence 467899999999966666666789999999987 6889999999988777889999999877665 57899987
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+- .+.|++-++.-.+..+. +++.|+|.|..+=|
T Consensus 249 SE-PMG~mL~NERMLEsYl~-Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 249 SE-PMGYMLVNERMLESYLH-ARKWLKPNGKMFPT 281 (517)
T ss_pred ec-cchhhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence 64 45666656555555443 56999999998766
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.45 E-value=3.3e-06 Score=79.17 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=63.1
Q ss_pred HHHHHHHHc-CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh
Q 018352 20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (357)
Q Consensus 20 vks~Li~~~-~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~ 98 (357)
+...+++.. ..++.+|||+|||+|..+..++... ..++++|+++.+++.+++++.. ..+++++++|+...++.
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--
Confidence 334444443 3467899999999998888877665 4799999999999999887643 22688999999876651
Q ss_pred hhhcCCccc---EEEEccchhh
Q 018352 99 MQEKANQAD---LVCCFQHLQM 117 (357)
Q Consensus 99 l~~~~~~FD---lV~~~~~lh~ 117 (357)
.|| +|+++..+|.
T Consensus 91 ------~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 91 ------DFPKQLKVVSNLPYNI 106 (253)
T ss_pred ------HcCCcceEEEcCChhh
Confidence 355 7777665544
No 180
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.44 E-value=3.2e-06 Score=85.31 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++.+|||+|||+|..+..++.. ..+|+|+|+++.|++.|+++.+.++. .+++|+.+|+... + ..+.....+||+|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~-l-~~~~~~~~~~D~v 366 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETV-L-PKQPWAGQIPDVL 366 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHH-H-HHHHhcCCCCCEE
Confidence 45689999999999888776654 45899999999999999998876654 3789999998541 1 1111124579999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~ 156 (357)
++.-.--- + ...+++.+.+ ++|++.+++ ..|...+.+-+
T Consensus 367 i~dPPr~G-~-----~~~~l~~l~~-l~~~~ivyv-sc~p~tlard~ 405 (431)
T TIGR00479 367 LLDPPRKG-C-----AAEVLRTIIE-LKPERIVYV-SCNPATLARDL 405 (431)
T ss_pred EECcCCCC-C-----CHHHHHHHHh-cCCCEEEEE-cCCHHHHHHHH
Confidence 87542100 0 2344555443 789876555 45655554433
No 181
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.43 E-value=1.2e-06 Score=80.91 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=61.3
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCcee-EEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA-EFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v-~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
++.+|||+|||+|+++..+++.+..+|+|+|+++.|+... .+... ++ .+...|+......+ +...-..+|++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~~---~v~~~~~~ni~~~~~~~-~~~d~~~~Dvs 147 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQDE---RVKVLERTNIRYVTPAD-IFPDFATFDVS 147 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcCC---CeeEeecCCcccCCHhH-cCCCceeeeEE
Confidence 6779999999999999988888788999999999988762 11110 22 23333444222111 10011356655
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
++.. ..++.++.++|++ |.++..+
T Consensus 148 fiS~------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 148 FISL------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred Eeeh------------HhHHHHHHHHhCc-CeEEEEc
Confidence 4432 1248889999999 8777663
No 182
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2.8e-07 Score=78.29 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=61.0
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
.+.+++|||||+|........-+...++|+||++++|+.++++..... .++.+.++|+....+ ..+.||.++
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE--vqidlLqcdildle~------~~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE--VQIDLLQCDILDLEL------KGGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh--hhhheeeeeccchhc------cCCeEeeEE
Confidence 678999999999955544444467789999999999999998887653 367899999987665 458899998
Q ss_pred Eccc
Q 018352 111 CFQH 114 (357)
Q Consensus 111 ~~~~ 114 (357)
++.-
T Consensus 120 iNpp 123 (185)
T KOG3420|consen 120 INPP 123 (185)
T ss_pred ecCC
Confidence 8763
No 183
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.37 E-value=4.5e-06 Score=84.94 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=82.5
Q ss_pred CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++.+|||+|||.|+=+..++.. +.+.+++.|+++.-++..+++++..+.. ++.+...|.....- . ..+.||
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~--~---~~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGA--A---LPETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhh--h---chhhcC
Confidence 47899999999999988777664 3468999999999999999988876542 57788888764221 1 236799
Q ss_pred EEE----Eccc--hhh------ccCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 108 LVC----CFQH--LQM------CFETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 108 lV~----~~~~--lh~------~fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.|+ |... ++- -+ +. ...+++|.++.+.|||||+++-+|+.-
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~-s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNW-SPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhC-CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 998 4321 111 01 11 123689999999999999999887663
No 184
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.36 E-value=7.2e-06 Score=66.58 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=69.9
Q ss_pred EEEECCCCChhHHHHHHhcC--CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC--CchhhhhhhcC-CcccEE
Q 018352 35 VCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQEKA-NQADLV 109 (357)
Q Consensus 35 VLDlGCG~G~~l~k~~~~~~--~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~--~~~~~~l~~~~-~~FDlV 109 (357)
++|+|||+|... .+..... ..++|+|+++.++..++..... .....+.+..+|... .++ .. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence 999999999754 2222222 3899999999999985555432 111016778888765 344 23 489999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
+....++... ....+.++.+.|+|+|.+++.....
T Consensus 124 -~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 -ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred -eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5544433132 6788999999999999999886654
No 185
>PRK04148 hypothetical protein; Provisional
Probab=98.35 E-value=6.5e-06 Score=69.73 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCCh-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
++.+|||+|||.|. .+..+.+.+ ..|+|+|+++.+++.|+++ .+.++.+|+++.++. .-+.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~-----~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLE-----IYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHH-----HHhcCCEE
Confidence 45789999999996 444555444 5999999999999888665 357899999987763 13679998
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.+.. ...+....+.++++.+. .-++++.-..
T Consensus 82 ysir-------pp~el~~~~~~la~~~~--~~~~i~~l~~ 112 (134)
T PRK04148 82 YSIR-------PPRDLQPFILELAKKIN--VPLIIKPLSG 112 (134)
T ss_pred EEeC-------CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 6543 44556666777776554 3455554433
No 186
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.34 E-value=3.5e-06 Score=83.61 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
++.+|||+|||+|.++..++..+ .+++|+|+++.+++.|+++.+.++.. +++|+++|+..... . ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~--~---~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFAT--A---QMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHH--h---cCCCCCEEE
Confidence 45799999999998877776544 68999999999999999998776543 78999999854211 0 124699998
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~ 157 (357)
+.-.-.- -...+++.+. .++|++++++. .|...+.+-+.
T Consensus 306 ~DPPr~G------~~~~~l~~l~-~~~p~~ivyvs-c~p~TlaRDl~ 344 (374)
T TIGR02085 306 VNPPRRG------IGKELCDYLS-QMAPKFILYSS-CNAQTMAKDIA 344 (374)
T ss_pred ECCCCCC------CcHHHHHHHH-hcCCCeEEEEE-eCHHHHHHHHH
Confidence 8653111 1223444444 37888766655 56666655443
No 187
>PLN02823 spermine synthase
Probab=98.34 E-value=3.5e-06 Score=82.32 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
...+||.||+|.|+.+..+++. +..+++++|+++++++.|++.+.... ...+++++.+|+... +....++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-----L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-----LEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-----HhhCCCCc
Confidence 4579999999999888877775 46789999999999999998775321 134788999998652 12235789
Q ss_pred cEEEEccchhh--ccCCHHHHHHHHH-HHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQM--CFETEERARRLLQ-NVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~--~fes~~~~~~~L~-~i~~~LkpGG~fi~t 145 (357)
|+|++-..-.. .....--.+.+++ .+.+.|+|||+++..
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 99998631110 0000001346787 899999999998866
No 188
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.34 E-value=5e-06 Score=83.34 Aligned_cols=130 Identities=19% Similarity=0.230 Sum_probs=101.4
Q ss_pred cchHHHHHHHHH-HHHHHHcCCCCC-EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEE
Q 018352 10 ELTHHRLYEFAK-TALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE 87 (357)
Q Consensus 10 ~~p~~~~~nwvk-s~Li~~~~~~~~-~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~ 87 (357)
..+..++..|.- +..|-.++.+.. ++|-+|||+-.....+.+.++..++.+|+|+..++....+.... .....+..
T Consensus 25 ~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~ 102 (482)
T KOG2352|consen 25 SDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVE 102 (482)
T ss_pred CChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEE
Confidence 344444444433 345556666666 99999999998888888889999999999999999988887532 23678899
Q ss_pred cCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHH------HHHHHHHHHhcccCCcEEEEEeC
Q 018352 88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEER------ARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 88 ~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~------~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
.|+....+ ++.+||+|+.-..++..|+.+.. ....+.+++++|++||+++..+.
T Consensus 103 ~d~~~l~f------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 103 MDMDQLVF------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ecchhccC------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99998888 67999999999999987765443 34789999999999999886643
No 189
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=4.9e-07 Score=84.87 Aligned_cols=99 Identities=24% Similarity=0.332 Sum_probs=80.1
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
+.+..++|+|||.|..+. ..+...++|.|++...+..|++.-. .....+|+...++ ...+||.+
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~-------~~~~~ad~l~~p~------~~~s~d~~ 107 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGG-------DNVCRADALKLPF------REESFDAA 107 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCC-------ceeehhhhhcCCC------CCCccccc
Confidence 357899999999993221 1255679999999998887755421 1567899988887 67899999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
++..++|+ |.+.....++++++.++|+|||..++.
T Consensus 108 lsiavihh-lsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 108 LSIAVIHH-LSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhh-hhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999 779999999999999999999987766
No 190
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.32 E-value=1.1e-06 Score=79.63 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=72.3
Q ss_pred HcCCCCCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 27 IYSHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 27 ~~~~~~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
....++.+|||+.||-|.++...++ .+.+.|+++|+++.+++..++..+.++....+..+++|+..... .+.
T Consensus 97 ~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-------~~~ 169 (200)
T PF02475_consen 97 NLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-------EGK 169 (200)
T ss_dssp TC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-
T ss_pred hcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-------ccc
Confidence 4467899999999999999998887 35678999999999999999999888777678999999865321 478
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
||.|++... +. ...+|..+.+++++||.+-
T Consensus 170 ~drvim~lp-~~-------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 170 FDRVIMNLP-ES-------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEE--T-SS-------GGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECCh-HH-------HHHHHHHHHHHhcCCcEEE
Confidence 999988652 11 2346788888999998763
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.32 E-value=3.1e-06 Score=87.16 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=86.6
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.+..+||||||+|..+.+++.. +...++|+|++...+..|.++....+. .|+.++..|+.. +...+ +++++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~--~~~~~--~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDL--ILNDL--PNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHH--HHHhc--CcccccEE
Confidence 4678999999999999988877 557899999999999998888766543 367777776532 21122 46889999
Q ss_pred EEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEeCCchHHH
Q 018352 110 CCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (357)
Q Consensus 110 ~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~ 153 (357)
.++|.--| +.... -...+++.++++|||||.+.+.|-+.+...
T Consensus 422 ~i~FPDPW-pKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~ 469 (506)
T PRK01544 422 YILFPDPW-IKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFY 469 (506)
T ss_pred EEECCCCC-CCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 99886544 21111 124689999999999999998887765443
No 192
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.28 E-value=7.9e-06 Score=78.98 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=82.2
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
-...+|+|.|.|..+..+.. .+.++-|+++....+..++..+. . .++.+.+|.+.. . -+-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~--------P~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-T--------PKGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-C--------CCcCeEEE
Confidence 36899999999988887777 77789999999999988877764 3 378888998775 4 24569999
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
++++|+ + +.++..++|+|+.+.|+|||.+++.
T Consensus 243 kWiLhd-w-tDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 243 KWILHD-W-TDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred Eeeccc-C-ChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 999999 6 6788999999999999999999987
No 193
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.27 E-value=1.3e-05 Score=69.93 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.+.-|||+|.|+|-.+.+.+..+ ...++.++.|++...+..+++.+ +.++.+|+.......... +...||.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~~l~e~-~gq~~D~ 120 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRTTLGEH-KGQFFDS 120 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHHHHhhc-CCCeeee
Confidence 46789999999999998888874 46899999999999999888864 458999987755211111 4578999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|+|.--+-. | ......+.|+.+...|.+||.++-.+
T Consensus 121 viS~lPll~-~-P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 121 VISGLPLLN-F-PMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred EEecccccc-C-cHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 999776655 4 55667789999999999999998664
No 194
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.23 E-value=5.2e-06 Score=82.54 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=80.0
Q ss_pred CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
+.+|||++||+|.....++.. +..+|+++|+++.+++.+++..+.++.. ++.+.++|+... + . ...+||+|.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~-l----~-~~~~fD~V~ 130 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANAL-L----H-EERKFDVVD 130 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHH-H----h-hcCCCCEEE
Confidence 468999999999888877654 5568999999999999999988766543 456888887431 1 1 135799998
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~ 154 (357)
+.- +.+ ...++..+.+.+++||+++++.-|...+..
T Consensus 131 lDP-----~Gs---~~~~l~~al~~~~~~gilyvSAtD~~~L~g 166 (382)
T PRK04338 131 IDP-----FGS---PAPFLDSAIRSVKRGGLLCVTATDTAPLCG 166 (382)
T ss_pred ECC-----CCC---cHHHHHHHHHHhcCCCEEEEEecCchhhcC
Confidence 754 222 235677767788999999999777665533
No 195
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.21 E-value=4.8e-06 Score=75.63 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHcCC-CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcC
Q 018352 11 LTHHRLYEFAKTALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89 (357)
Q Consensus 11 ~p~~~~~nwvks~Li~~~~~-~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D 89 (357)
+..+-+-.|++......... ...++|||||=+...... ..+.-.|+.||+++. .-.+.+.|
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------------~~~I~qqD 91 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------------HPGILQQD 91 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------------CCCceeec
Confidence 35556778888766544322 347999999975533322 234457999999852 22346777
Q ss_pred CCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcE-----EEEEeCCch
Q 018352 90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY-----FLGITPDSS 150 (357)
Q Consensus 90 ~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~-----fi~t~pd~~ 150 (357)
....++.. ...+.||+|+|..++.| +.+..+.-+|++.+++.|+|+|. +++..|.+-
T Consensus 92 Fm~rplp~---~~~e~FdvIs~SLVLNf-VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 92 FMERPLPK---NESEKFDVISLSLVLNF-VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred cccCCCCC---CcccceeEEEEEEEEee-CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 76655521 13578999999999999 77889999999999999999999 999988863
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.17 E-value=8.5e-06 Score=78.45 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCChhHHHHHH--------hcCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhh
Q 018352 31 PYVTVCDLYCGAGVDVDKWET--------ALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQE 101 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~--------~~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~ 101 (357)
++.+|||-+||+|+++..... ....+++|+|+++.++..|+.++.-.+.. ....+..+|....+...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~---- 121 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI---- 121 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT----
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc----
Confidence 466899999999998877665 24568999999999999998765332211 12457888876644311
Q ss_pred cCCcccEEEEccchhhc------cC-----------CHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 102 KANQADLVCCFQHLQMC------FE-----------TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 102 ~~~~FDlV~~~~~lh~~------fe-----------s~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
....||+|+++--+-.. .. ....--.++..+.+.|++||++.+.+|++
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 24789999996532221 00 00112248899999999999999888875
No 197
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.16 E-value=2.7e-06 Score=75.45 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh----hhcCC
Q 018352 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM----QEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l----~~~~~ 104 (357)
.+.+||||||+.|+.+..+.... ..+++|+|+.+. .. ...+.++++|+........+ ....+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~---~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP---LQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc---ccceeeeecccchhhHHHhhhhhcccccc
Confidence 34899999999999998887776 579999999976 10 11466677777553222222 11236
Q ss_pred cccEEEEccchhhc-------cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHHHH
Q 018352 105 QADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK 158 (357)
Q Consensus 105 ~FDlV~~~~~lh~~-------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~~~ 158 (357)
.||+|+|-.+.... +.+.+-....+.-+.+.|+|||.|++-+... ..+...++.
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~ 154 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR 154 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence 89999997633221 1122334455666668899999999875443 455555543
No 198
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.16 E-value=3.5e-06 Score=82.90 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=92.6
Q ss_pred HHHHHHHHHHc---CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352 18 EFAKTALIKIY---SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94 (357)
Q Consensus 18 nwvks~Li~~~---~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~ 94 (357)
.|++...+..+ +.++..++|+|||-|+.......-+...++|+|.++..+..+..............|+.+|+...+
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~ 173 (364)
T KOG1269|consen 94 FWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP 173 (364)
T ss_pred HHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC
Confidence 36665444333 457778999999999888887777878999999999999888776654433335566888988888
Q ss_pred hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+ .++.||.|.+..+..| ..+...+++++.++++|||+++.-
T Consensus 174 f------edn~fd~v~~ld~~~~----~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 174 F------EDNTFDGVRFLEVVCH----APDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred C------CccccCcEEEEeeccc----CCcHHHHHHHHhcccCCCceEEeH
Confidence 8 6799999998887666 345778899999999999999865
No 199
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.09 E-value=2e-05 Score=75.53 Aligned_cols=80 Identities=16% Similarity=0.060 Sum_probs=61.8
Q ss_pred CCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++..+||++||.|+++..++... .++|+|+|.+++|++.|+++... ..++.++++|.... ...+.....++|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l--~~~l~~~~~~vD 92 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNL--KEVLAEGLGKVD 92 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHH--HHHHHcCCCccC
Confidence 467899999999999999998873 47999999999999999998764 23789999987653 222221113799
Q ss_pred EEEEccc
Q 018352 108 LVCCFQH 114 (357)
Q Consensus 108 lV~~~~~ 114 (357)
.|++..+
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9988654
No 200
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.09 E-value=9.7e-05 Score=65.99 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
.+.++||+-+|+|......+.++..+++.||.+..++...++..+..+...++.++..|+. .+...+. ..++||+|.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L~~~~-~~~~FDlVf 119 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RALKQLG-TREPFDLVF 119 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHHHhcC-CCCcccEEE
Confidence 5789999999999988888888999999999999999999999887765568889999986 2211121 123599999
Q ss_pred EccchhhccCCHHHHHHHHHH--HHhcccCCcEEEEEeCCc
Q 018352 111 CFQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~--i~~~LkpGG~fi~t~pd~ 149 (357)
.---++.-+ -+....+.. -...|+|+|.+++-....
T Consensus 120 lDPPy~~~l---~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 LDPPYAKGL---LDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred eCCCCccch---hhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 877665311 111222222 457899999999885543
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.08 E-value=9.3e-06 Score=71.17 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=52.8
Q ss_pred EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 34 ~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
.|+|+.||-||++..+++. +.+|+++|+++..++.|+...+-.+...+++|+++|..+.. ..+.. ...||+|.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~--~~~~~-~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL--KRLKS-NKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG--GGB-------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH--hhccc-cccccEEEEC
Confidence 6999999999999999776 56899999999999999999887666668999999986521 11111 1128999873
No 202
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.08 E-value=3.6e-06 Score=84.70 Aligned_cols=113 Identities=21% Similarity=0.218 Sum_probs=71.1
Q ss_pred CEEEEECCCCChhHHHHHHhcCCeEE--EEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 33 VTVCDLYCGAGVDVDKWETALIANYI--GIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~~v~--GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
..+||+|||.|.+...++..++..+. --|..+..++.|-+|- . .+.+-..-....++ +++.||+|-
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG----v--pa~~~~~~s~rLPf------p~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG----V--PAMIGVLGSQRLPF------PSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC----c--chhhhhhccccccC------Cccchhhhh
Confidence 47999999999988888776652221 2244555666665552 0 11111111123444 689999999
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc--------hHHHHHHHHhH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS--------STIWAKYQKNV 160 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~--------~~i~~~~~~~~ 160 (357)
|..++.. +... -..+|-++-|+|+|||+|+.+.|-. ..+++.+.+..
T Consensus 187 csrc~i~-W~~~--~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~ 241 (506)
T PF03141_consen 187 CSRCLIP-WHPN--DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLA 241 (506)
T ss_pred ccccccc-chhc--ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHH
Confidence 9887554 2111 2358899999999999999996543 25555555433
No 203
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.07 E-value=3.6e-05 Score=75.81 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=71.8
Q ss_pred CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-------c---
Q 018352 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-------K--- 102 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-------~--- 102 (357)
.+|||+|||+|..+..++.. ..+|+|+|++++|++.|+++.+.++.. +++|+.+|+... + ..... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~-~-~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEF-T-QAMNGVREFRRLKGID 274 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHH-H-HHHhhccccccccccc
Confidence 47999999999888865544 469999999999999999998776543 689999998542 1 11000 0
Q ss_pred --CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352 103 --ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (357)
Q Consensus 103 --~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~ 157 (357)
...||+|+..-. ..-+ ...+++.+.+ |++ ++...+|...+.+-+.
T Consensus 275 ~~~~~~d~v~lDPP-R~G~-----~~~~l~~l~~---~~~-ivYvsC~p~tlaRDl~ 321 (353)
T TIGR02143 275 LKSYNCSTIFVDPP-RAGL-----DPDTCKLVQA---YER-ILYISCNPETLKANLE 321 (353)
T ss_pred cccCCCCEEEECCC-CCCC-----cHHHHHHHHc---CCc-EEEEEcCHHHHHHHHH
Confidence 124899977543 2111 2234454444 555 4445566666655543
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.05 E-value=6.5e-05 Score=80.40 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-------------------------------------------cCCeEEEEeCChHH
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-------------------------------------------LIANYIGIDVATSG 66 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-------------------------------------------~~~~v~GiDiS~~~ 66 (357)
.++..++|-+||+|..+...+.. ...+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 45789999999999888655431 01269999999999
Q ss_pred HHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhccc---CCcEEE
Q 018352 67 IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLK---PGGYFL 143 (357)
Q Consensus 67 l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lk---pGG~fi 143 (357)
++.|+++....+....+.|.++|+....... ..++||+|+++--..--.....+...+.+.+.+.|+ +|+...
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9999999988766556899999987754311 235799999986433323334445555455444444 899998
Q ss_pred EEeCCch
Q 018352 144 GITPDSS 150 (357)
Q Consensus 144 ~t~pd~~ 150 (357)
+.+++..
T Consensus 345 llt~~~~ 351 (702)
T PRK11783 345 LFSSSPE 351 (702)
T ss_pred EEeCCHH
Confidence 8888754
No 205
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.05 E-value=2.2e-05 Score=77.82 Aligned_cols=106 Identities=11% Similarity=0.184 Sum_probs=80.6
Q ss_pred CEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
.+|||+.||+|.....++.. +..+|+++|+++.+++.++++.+.++.. ++++++.|+...- .....+||+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l-----~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVL-----RYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHH-----HHhCCCCCEEE
Confidence 58999999999888888776 5689999999999999999998776432 5778888875421 11235799997
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i 152 (357)
.-- |.+ ...++..+.+.+++||++.+|.-|...+
T Consensus 120 lDP-----fGs---~~~fld~al~~~~~~glL~vTaTD~~~L 153 (374)
T TIGR00308 120 IDP-----FGT---PAPFVDSAIQASAERGLLLVTATDTSAL 153 (374)
T ss_pred eCC-----CCC---cHHHHHHHHHhcccCCEEEEEecccHHh
Confidence 654 222 2357888889999999999996665443
No 206
>PRK00536 speE spermidine synthase; Provisional
Probab=98.04 E-value=2.9e-05 Score=73.20 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=72.6
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
+...+||=||.|.|+.++..++.+. +++.+||++++++.|++-..... ...+++++.. + .....++|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~------~---~~~~~~~f 140 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ------L---LDLDIKKY 140 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh------h---hhccCCcC
Confidence 3568999999999999999998874 99999999999999999554321 1224555431 1 01123689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+|++-. .+ + ..+.+.++++|+|||+++..
T Consensus 141 DVIIvDs----~~-~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 141 DLIICLQ----EP-D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CEEEEcC----CC-C----hHHHHHHHHhcCCCcEEEEC
Confidence 9999764 23 2 46789999999999999986
No 207
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.03 E-value=3.6e-05 Score=79.63 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCChhHHHHHHhc---------CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh
Q 018352 31 PYVTVCDLYCGAGVDVDKWETAL---------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~---------~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~ 101 (357)
...+|||.|||+|+++......- ..+++|+|+++.++..|+.++.... ...+.....|.....+.. ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~-~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLN-IES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccc-ccc
Confidence 35699999999999887765531 1478999999999999998876543 123444555543322110 001
Q ss_pred cCCcccEEEEccchhhc-cCCHH------------------------------H-----------HHHH-HHHHHhcccC
Q 018352 102 KANQADLVCCFQHLQMC-FETEE------------------------------R-----------ARRL-LQNVSSLLKP 138 (357)
Q Consensus 102 ~~~~FDlV~~~~~lh~~-fes~~------------------------------~-----------~~~~-L~~i~~~Lkp 138 (357)
..+.||+|+++--.--. ....+ . .-.+ ++.+.++|++
T Consensus 109 ~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~ 188 (524)
T TIGR02987 109 YLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANK 188 (524)
T ss_pred ccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCC
Confidence 23579999987532210 00000 0 0113 3567899999
Q ss_pred CcEEEEEeCCc
Q 018352 139 GGYFLGITPDS 149 (357)
Q Consensus 139 GG~fi~t~pd~ 149 (357)
||++.+.+|++
T Consensus 189 ~G~~~~I~P~s 199 (524)
T TIGR02987 189 NGYVSIISPAS 199 (524)
T ss_pred CCEEEEEEChH
Confidence 99999998885
No 208
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=6.9e-05 Score=68.56 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=82.4
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD 107 (357)
...++||||.=||..+..|+.+ ..++|+++|++++..+.+.+.++..+....++|+++++.. .+...++. ..++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e-sLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE-SLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh-hHHHHHhcCCCCcee
Confidence 3579999999999888777766 5679999999999999998877766666689999998765 23222221 358999
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.|+.-. ..........++.++||+||++++.
T Consensus 152 faFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence 996543 2344457889999999999999877
No 209
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.00 E-value=0.0001 Score=67.20 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=64.5
Q ss_pred CCCCCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHh-------cC-CCceeEEEEcCCCCCchhhhh
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWEN-------QR-KNFIAEFFEADPCAENFETQM 99 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~-------~~-~~~~v~f~~~D~~~~~~~~~l 99 (357)
+.++...+|||||.|..+...+. .+..+.+||++.+...+.|+...+. .+ ...++++..+|..+.++...+
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 45789999999999976655443 4777799999999988877653322 11 134678889998775542211
Q ss_pred hhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 100 ~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
-...|+|+++.. +| .++....|.+....||+|-++|-+
T Consensus 120 ---~s~AdvVf~Nn~---~F--~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 ---WSDADVVFVNNT---CF--DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp ---GHC-SEEEE--T---TT---HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ---hcCCCEEEEecc---cc--CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 135899998763 46 334556678888889998877644
No 210
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=8.7e-05 Score=65.61 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=79.7
Q ss_pred CCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
..-+||||||+|..+..+.+. +...+.++||++.+++...+..+.++. ++..++.|+.+. + ..++.|++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-----l--~~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-----L--RNESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-----h--ccCCccEE
Confidence 567999999999766666554 566899999999999988887776643 466778876542 2 23778887
Q ss_pred EEccc---------------hhhc--cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHH
Q 018352 110 CCFQH---------------LQMC--FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKY 156 (357)
Q Consensus 110 ~~~~~---------------lh~~--fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~ 156 (357)
+-+-. .-|+ -...+-..+++..+-.+|.|.|.|+..+..+ .+|.+.+
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l 181 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKIL 181 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHH
Confidence 64321 1111 1123346778889999999999999886554 4455544
No 211
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.99 E-value=6.8e-05 Score=71.47 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=79.4
Q ss_pred CEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcC--C-CceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR--K-NFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~--~-~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.+||-||-|.|+.+...++.. ..+++.+||++..++.|++.+.... . ..+++.+..|... + +.....+||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~--~---v~~~~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE--F---LRDCEEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH--H---HHhCCCcCCE
Confidence 599999999999999998874 7899999999999999999876532 1 2467888888644 1 2223358999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|++-..=.-.-...=--..+++.++++|+++|+++..+
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 98754211000000013579999999999999999883
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.95 E-value=2.5e-05 Score=73.12 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHHhHhcC---CCceeEEEEcCCCCCchhhhhhhcCC-
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN- 104 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~l~~~~~- 104 (357)
+...+||=||-|.|+.+..+.+.. ..+++++||++..++.|++-+.... ...+++++..|+.. + +.....
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--~---l~~~~~~ 149 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--F---LKETQEE 149 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--H---HHTSSST
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--H---HHhccCC
Confidence 457899999999998888887765 6799999999999999998765421 13478889998744 2 222234
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+||+|++-..-.......--.+.+++.+.++|+|||+++...
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 899998733211000000013578999999999999999874
No 213
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.93 E-value=8.4e-05 Score=70.70 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
...+|||+|||.|..+..+... ...+++++|.|+.|++.++...+.......... ..+...... .....|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~------~~~~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRDFL------PFPPDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcccc------cCCCCcE
Confidence 3469999999999544332221 466899999999999999887654321101111 111111000 1234499
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHhH
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV 160 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~~ 160 (357)
|++.++|.- +.+ +....+++++.+.+.+ +++++ +|.....+...++.+
T Consensus 106 vi~s~~L~E-L~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 106 VIASYVLNE-LPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQL 156 (274)
T ss_pred EEEehhhhc-CCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHH
Confidence 999999887 445 7778899999888876 77777 556666666666543
No 214
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.92 E-value=8.6e-05 Score=72.36 Aligned_cols=106 Identities=17% Similarity=0.074 Sum_probs=85.7
Q ss_pred HHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 26 ~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
.+...+|.+|||+=||-|-++...+..+...|+++|+++.+++..++.++-++....+..+++|+..... ..+.
T Consensus 183 a~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------~~~~ 256 (341)
T COG2520 183 AELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------ELGV 256 (341)
T ss_pred HhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------cccc
Confidence 3445569999999999999999988887766999999999999999999888776678999999877544 2378
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
||-|++... ..+.+++..+.+++++||.+..-
T Consensus 257 aDrIim~~p--------~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 257 ADRIIMGLP--------KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred CCEEEeCCC--------CcchhhHHHHHHHhhcCcEEEEE
Confidence 999987651 13456777888889999987765
No 215
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5e-05 Score=68.57 Aligned_cols=103 Identities=18% Similarity=0.115 Sum_probs=74.2
Q ss_pred HcCCCCCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcC---------CCceeEEEEcCCCCCc
Q 018352 27 IYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQR---------KNFIAEFFEADPCAEN 94 (357)
Q Consensus 27 ~~~~~~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~---------~~~~v~f~~~D~~~~~ 94 (357)
..+.|+.+.||+|.|+|-.+.-+... .....+|||.-++.++.+++.+...- ...+..++++|+....
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 34578999999999999655544422 34455999999999999998775421 1225678899987643
Q ss_pred hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
- ...+||.|.|..+ +.+..+++...|++||.+++-
T Consensus 158 ~------e~a~YDaIhvGAa----------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 158 A------EQAPYDAIHVGAA----------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred C------ccCCcceEEEccC----------ccccHHHHHHhhccCCeEEEe
Confidence 3 4689999988752 233456677789999998876
No 216
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.90 E-value=1.5e-05 Score=73.05 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC-CCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-KNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~-~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.+.+|||.|.|-|-.+...+..+..+|+-++-++..|+.|.-+--+.+ ....++.+.+|+.+. ...+ .+.+||+|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~--V~~~--~D~sfDaI 209 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV--VKDF--DDESFDAI 209 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH--HhcC--CccccceE
Confidence 589999999999988888888888899999999999998865421111 122578899998652 1112 56899999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
+---. ..+...+--..++.++++|+|||||.++--+-+
T Consensus 210 iHDPP-RfS~AgeLYseefY~El~RiLkrgGrlFHYvG~ 247 (287)
T COG2521 210 IHDPP-RFSLAGELYSEEFYRELYRILKRGGRLFHYVGN 247 (287)
T ss_pred eeCCC-ccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence 74221 112223334678999999999999999855433
No 217
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00026 Score=69.81 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=85.2
Q ss_pred HHHHHHcCC--CCCEEEEECCCCChhHHHHHHhc---CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352 22 TALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (357)
Q Consensus 22 s~Li~~~~~--~~~~VLDlGCG~G~~l~k~~~~~---~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~ 96 (357)
|++....+. ++.+|||+|++.|+=+..++..- ...|+++|+++.-++..+++.+..+.. ++..+..|.....-.
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~ 223 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAEL 223 (355)
T ss_pred HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccc
Confidence 455555544 78999999999999777776652 345799999999999999988876554 367777776543211
Q ss_pred hhhhhcCCcccEEEEc------cchh------hccCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 97 TQMQEKANQADLVCCF------QHLQ------MCFETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 97 ~~l~~~~~~FDlV~~~------~~lh------~~fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.. ..++||.|++- .+++ |.+ +. ....++|.++.+.|||||+++-+|++-
T Consensus 224 --~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~-~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 224 --LP-GGEKFDRILLDAPCSGTGVIRRDPDVKWRR-TPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred --cc-ccCcCcEEEECCCCCCCcccccCccccccC-CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 00 12369999752 1221 211 11 224679999999999999999887664
No 218
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00022 Score=64.62 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=81.9
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~ 104 (357)
+.++.+|+||||-.|+.+....+. ....|+|+|+.+-- ...++.++++|++..+....+.. ...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence 457899999999999888776665 23459999998632 12258999999998776544432 234
Q ss_pred cccEEEEccch--------hhccCCHHHHHHHHHHHHhcccCCcEEEEEe---CCchHHHHHHHHhH
Q 018352 105 QADLVCCFQHL--------QMCFETEERARRLLQNVSSLLKPGGYFLGIT---PDSSTIWAKYQKNV 160 (357)
Q Consensus 105 ~FDlV~~~~~l--------h~~fes~~~~~~~L~~i~~~LkpGG~fi~t~---pd~~~i~~~~~~~~ 160 (357)
.+|+|+|-.+- ++ ..+..-...++.-+..+|+|||.|++-. -+.+.+++.+++..
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F 176 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDH-ARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF 176 (205)
T ss_pred CcceEEecCCCCcCCCccccH-HHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence 57999975432 22 1133445567777888999999999774 44466666666543
No 219
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.82 E-value=0.00012 Score=68.91 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=71.3
Q ss_pred CEEEEECCC--CChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCCcc
Q 018352 33 VTVCDLYCG--AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (357)
Q Consensus 33 ~~VLDlGCG--~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~~F 106 (357)
...|||||| +-+.+...++. +.++|+-+|+.+..+..++..+..... -...++++|+....- .+. ...+-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~--iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEA--ILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHH--HHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHH--HhcCHHHHhcC
Confidence 479999999 34477777664 678999999999999999998876531 148899999987431 111 011223
Q ss_pred c-----EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 107 D-----lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
| .|++...+|+ +.+.++...+++.+...|.||.++.++.
T Consensus 147 D~~rPVavll~~vLh~-v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHF-VPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp -TTS--EEEECT-GGG-S-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCCCeeeeeeeeecc-CCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 3 4566778998 6677789999999999999999999993
No 220
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.81 E-value=0.00012 Score=68.48 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=64.4
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
+++...||++|-|||..+.+++..+. +|+++++++.|+.+..+|.++........++++|....++ ..||+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--------P~fd~ 126 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--------PRFDG 126 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--------cccce
Confidence 45889999999999988888887765 9999999999999999999876655578899999987655 46898
Q ss_pred EEEcc
Q 018352 109 VCCFQ 113 (357)
Q Consensus 109 V~~~~ 113 (357)
++++.
T Consensus 127 cVsNl 131 (315)
T KOG0820|consen 127 CVSNL 131 (315)
T ss_pred eeccC
Confidence 88744
No 221
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.80 E-value=0.00028 Score=63.23 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCCCC-EEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch
Q 018352 18 EFAKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95 (357)
Q Consensus 18 nwvks~Li~~~~~~~~-~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~ 95 (357)
..+.|..+..+++... +++|||+|.|--..-++-. +..+++.+|....-+.-.+.-....+.. ++++++..+.. ..
T Consensus 34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~ 111 (184)
T PF02527_consen 34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PE 111 (184)
T ss_dssp HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TT
T ss_pred HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cc
Confidence 3445555666666544 8999999999555444443 5568999999998777766666555443 68889888755 11
Q ss_pred hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE-eCCc
Q 018352 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS 149 (357)
Q Consensus 96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t-~pd~ 149 (357)
...+||+|++-. +.+ ...+++-+...|++||+++.. .++.
T Consensus 112 ------~~~~fd~v~aRA-----v~~---l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 112 ------YRESFDVVTARA-----VAP---LDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp ------TTT-EEEEEEES-----SSS---HHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred ------cCCCccEEEeeh-----hcC---HHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 358999999876 333 446788889999999999877 4444
No 222
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.80 E-value=0.00011 Score=72.75 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=71.7
Q ss_pred CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc----------
Q 018352 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK---------- 102 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~---------- 102 (357)
.+|||++||+|..+..+++ +..+|+|+|+|+.|++.|+++.+.++.. +++|+.+|+... + ..+...
T Consensus 208 ~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~-l-~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEF-T-QAMNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHH-H-HHHhhccccccccccc
Confidence 5799999999988886654 4569999999999999999988776543 789999998542 1 111100
Q ss_pred --CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352 103 --ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (357)
Q Consensus 103 --~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~ 156 (357)
..+||+|+..--- . .-...+++.+.+ |+++ +...+|...+.+-+
T Consensus 284 ~~~~~~D~v~lDPPR-~-----G~~~~~l~~l~~---~~~i-vyvSC~p~tlarDl 329 (362)
T PRK05031 284 LKSYNFSTIFVDPPR-A-----GLDDETLKLVQA---YERI-LYISCNPETLCENL 329 (362)
T ss_pred ccCCCCCEEEECCCC-C-----CCcHHHHHHHHc---cCCE-EEEEeCHHHHHHHH
Confidence 1258999875431 1 012334444444 5554 44455556655444
No 223
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.74 E-value=0.00047 Score=65.22 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCC-----CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc--CCCc-------
Q 018352 16 LYEFAKTALIKIYSH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNF------- 81 (357)
Q Consensus 16 ~~nwvks~Li~~~~~-----~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~--~~~~------- 81 (357)
...+|.+.|-..+.. ...+||-=|||.|+.+..++..++ .+.|.|.|--|+-..+-.+... ...+
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 456677776665542 357899999999999999988887 8999999999976554432210 0001
Q ss_pred ------------------------------eeEEEEcCCCCCchhhhhhhc--CCcccEEEEccchhhccCCHHHHHHHH
Q 018352 82 ------------------------------IAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLL 129 (357)
Q Consensus 82 ------------------------------~v~f~~~D~~~~~~~~~l~~~--~~~FDlV~~~~~lh~~fes~~~~~~~L 129 (357)
+.....+|..+. .... .++||+|++.| ...+....-..|
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~-----y~~~~~~~~~d~VvT~F----FIDTA~Ni~~Yi 185 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEV-----YGPDENKGSFDVVVTCF----FIDTAENIIEYI 185 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEe-----cCCcccCCcccEEEEEE----EeechHHHHHHH
Confidence 112222222211 1111 37899998777 345567788999
Q ss_pred HHHHhcccCCcEEEEE
Q 018352 130 QNVSSLLKPGGYFLGI 145 (357)
Q Consensus 130 ~~i~~~LkpGG~fi~t 145 (357)
+.|.++|||||+.|=.
T Consensus 186 ~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 186 ETIEHLLKPGGYWINF 201 (270)
T ss_pred HHHHHHhccCCEEEec
Confidence 9999999999987744
No 224
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.73 E-value=0.00062 Score=58.07 Aligned_cols=106 Identities=21% Similarity=0.241 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCCChhHHHHHH-----hcCCeEEEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWET-----ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK 102 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~-----~~~~~v~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~ 102 (357)
.+..+|+|+|||.|.....++. ....+|+|+|.++..++.|.++.+... ...+..+..++..... .
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-------S 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-------c
Confidence 4578999999999976666665 456699999999999999999887654 2234555555543321 1
Q ss_pred CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (357)
Q Consensus 103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~ 151 (357)
....++++ ++|- ..+ -...+|+...+ ++-.++...|....
T Consensus 97 ~~~~~~~v---gLHa-CG~--Ls~~~l~~~~~---~~~~~l~~vpCCyh 136 (141)
T PF13679_consen 97 SDPPDILV---GLHA-CGD--LSDRALRLFIR---PNARFLVLVPCCYH 136 (141)
T ss_pred cCCCeEEE---Eeec-ccc--hHHHHHHHHHH---cCCCEEEEcCCccc
Confidence 34566665 5665 222 22344554444 66677777777643
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.66 E-value=0.00085 Score=61.44 Aligned_cols=106 Identities=14% Similarity=0.069 Sum_probs=75.5
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
+.++.+||-||..+|........- ..+.|++++.|+.+.+..-...+.. .|+--+..|+....-... --+..
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~---lv~~V 144 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRM---LVEMV 144 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTT---TS--E
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhc---ccccc
Confidence 458899999999999888888775 3679999999997766554443332 167778899886443222 23589
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|+|.+--+ ..++++-++.|+...||+||.|++.+
T Consensus 145 DvI~~DVa------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 145 DVIFQDVA------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEE-S------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEecCC------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 99987653 34578999999999999999999873
No 226
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.0013 Score=64.88 Aligned_cols=119 Identities=17% Similarity=0.121 Sum_probs=86.5
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcC---------------------------------C-------eEEEEeCChHHHHH
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALI---------------------------------A-------NYIGIDVATSGIGE 69 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~---------------------------------~-------~v~GiDiS~~~l~~ 69 (357)
.++..++|--||+|..+...+.... . .++|+|+++.+|+.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 3567999999999988766544321 1 37899999999999
Q ss_pred HHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHH----HHHHHHHHHHhcccCCcEEEEE
Q 018352 70 ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE----RARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 70 A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~----~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+.+.+..+....++|.++|+....- +...+|+|+|+--.---+.+.+ -.+.+.+.+++.++--+.++++
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999988877789999999976443 2268999999864222223332 2356667777888888899988
Q ss_pred eCCchHHHH
Q 018352 146 TPDSSTIWA 154 (357)
Q Consensus 146 ~pd~~~i~~ 154 (357)
+...-....
T Consensus 344 t~e~~~~~~ 352 (381)
T COG0116 344 TSEDLLFCL 352 (381)
T ss_pred ccHHHHHHH
Confidence 766544433
No 227
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00031 Score=70.94 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352 15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94 (357)
Q Consensus 15 ~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~ 94 (357)
+|..|+...+-. .++.+|||+-||.|.+...++ .+..+|+|+|+++++++.|++.++.++.. +++|..+|+....
T Consensus 280 kl~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~ 354 (432)
T COG2265 280 KLYETALEWLEL---AGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHhh---cCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHh
Confidence 344555544321 356799999999998887775 46669999999999999999999888765 4999999986533
Q ss_pred hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (357)
Q Consensus 95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~ 157 (357)
. ... ....+|+|+..--=-- . .+.+++.+.+ ++|-. ++-..+|..++.+-+.
T Consensus 355 ~--~~~-~~~~~d~VvvDPPR~G-~-----~~~~lk~l~~-~~p~~-IvYVSCNP~TlaRDl~ 406 (432)
T COG2265 355 P--AWW-EGYKPDVVVVDPPRAG-A-----DREVLKQLAK-LKPKR-IVYVSCNPATLARDLA 406 (432)
T ss_pred h--hcc-ccCCCCEEEECCCCCC-C-----CHHHHHHHHh-cCCCc-EEEEeCCHHHHHHHHH
Confidence 2 111 2357899976431110 0 1234555544 44444 4445678777766554
No 228
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00086 Score=62.90 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=88.5
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
+.|+.+||+-|.|.|+....++++ +.++++-+|+-+.--+.|.+.++..+...++++.+-|++...+.. +...+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~a 178 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLKA 178 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----ccccc
Confidence 569999999999999888887775 678999999999999999999998888889999999999877632 46789
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCc-EEEEEeCCchHHH
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSSTIW 153 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG-~fi~t~pd~~~i~ 153 (357)
|.|..-.- .+-.++-.++..||-+| +|+..+|+-+.+-
T Consensus 179 DaVFLDlP---------aPw~AiPha~~~lk~~g~r~csFSPCIEQvq 217 (314)
T KOG2915|consen 179 DAVFLDLP---------APWEAIPHAAKILKDEGGRLCSFSPCIEQVQ 217 (314)
T ss_pred ceEEEcCC---------ChhhhhhhhHHHhhhcCceEEeccHHHHHHH
Confidence 99965432 23334555666888766 7777788876654
No 229
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0011 Score=62.31 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=60.7
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..++.+|||||+|.|..+..+++... +|+++++++.++...+++... ..+++.+++|+...++... .+++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~l-----~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPSL-----AQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchhh-----cCCCE
Confidence 34678999999999988888877665 799999999999999888752 2378999999998777210 16777
Q ss_pred EEEccch
Q 018352 109 VCCFQHL 115 (357)
Q Consensus 109 V~~~~~l 115 (357)
|+++--.
T Consensus 99 vVaNlPY 105 (259)
T COG0030 99 VVANLPY 105 (259)
T ss_pred EEEcCCC
Confidence 7775533
No 230
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.48 E-value=0.0015 Score=59.60 Aligned_cols=110 Identities=11% Similarity=0.024 Sum_probs=74.1
Q ss_pred EEEECCCCChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352 35 VCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (357)
Q Consensus 35 VLDlGCG~G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~ 113 (357)
|.||||-.|.....+.+.+. .+++++|+++..++.|++..+..+...++++..+|... .+. +....|+|++..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~-----~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLK-----PGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G-------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccC-----CCCCCCEEEEec
Confidence 68999999987777777754 57999999999999999999887767789999999755 221 123378887765
Q ss_pred chhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHH
Q 018352 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (357)
Q Consensus 114 ~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~ 156 (357)
| .-.....+|.+....++..-.||..-.+....++++
T Consensus 75 ----M--GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~ 111 (205)
T PF04816_consen 75 ----M--GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRW 111 (205)
T ss_dssp ----E---HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHH
T ss_pred ----C--CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHH
Confidence 1 234577788888888877777877755554444443
No 231
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.47 E-value=0.0005 Score=65.69 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=79.2
Q ss_pred CCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++.+|||+|+|.|+=+..++.. ..+.+++.|++..-+...+.+.+..+. .++.....|....... . ....||
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~--~--~~~~fd 158 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPK--K--PESKFD 158 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHH--H--HTTTEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccc--c--cccccc
Confidence 36889999999999987777665 357999999999999999888876543 2556666665442110 1 234699
Q ss_pred EEEEc----c--chh------hccC--C----HHHHHHHHHHHHhcc----cCCcEEEEEeCCc
Q 018352 108 LVCCF----Q--HLQ------MCFE--T----EERARRLLQNVSSLL----KPGGYFLGITPDS 149 (357)
Q Consensus 108 lV~~~----~--~lh------~~fe--s----~~~~~~~L~~i~~~L----kpGG~fi~t~pd~ 149 (357)
.|++- . .+. |... . ....+++|+++.+.+ ||||+++-+|+.-
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99851 1 111 1110 0 122467999999999 9999999887664
No 232
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.35 E-value=0.0025 Score=60.49 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=63.7
Q ss_pred CCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhH-hcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 32 YVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~-~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
..+|+=||||.=-.+.-++.. ....++++|+++++++.|++..+ ..+...++.|+.+|...... .-..||
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------dl~~~D 194 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------DLKEYD 194 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------G----S
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------ccccCC
Confidence 359999999976555444432 24579999999999999998776 22334478999999865433 236899
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
+|+....... +.+...+++.++.+.++||..++.-.-+
T Consensus 195 vV~lAalVg~---~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 195 VVFLAALVGM---DAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp EEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred EEEEhhhccc---ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 9976552221 4456778999999999999988877444
No 233
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.32 E-value=0.0015 Score=63.66 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=64.7
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
..++.++|||||++||.+..+.+.+. +|+|||.++- + ..... ..++.....|.....- ..+.+|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l----~-~~L~~---~~~V~h~~~d~fr~~p------~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM----A-QSLMD---TGQVEHLRADGFKFRP------PRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc----C-HhhhC---CCCEEEEeccCcccCC------CCCCCCE
Confidence 35789999999999999999988877 9999996642 1 11222 2268888888765321 1478999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCC--cEEEEE
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI 145 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpG--G~fi~t 145 (357)
|+|-.+ +++.++.+-+.+.|..| ..+|++
T Consensus 274 vVcDmv--------e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 274 LVCDMV--------EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred EEEecc--------cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 998762 23445566666777655 355555
No 234
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.31 E-value=0.00099 Score=65.64 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=67.2
Q ss_pred CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc--------hhh--hhhhc
Q 018352 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--------FET--QMQEK 102 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~--------~~~--~l~~~ 102 (357)
.+|||+.||.|.++..+ .....+|+|+|+++++++.|++.++.++.. +++|+.+++.... +.. .+...
T Consensus 198 ~~vlDlycG~G~fsl~l-a~~~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPL-AKKAKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp TEEEEES-TTTCCHHHH-HCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred CcEEEEeecCCHHHHHH-HhhCCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 48999999999777776 455679999999999999999999877653 7999988764311 100 00012
Q ss_pred CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (357)
Q Consensus 103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~ 157 (357)
...+|+|+.--.=-- . + ..+++.+.+ + .+++-..+|...+.+-+.
T Consensus 276 ~~~~d~vilDPPR~G-~-~----~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~ 320 (352)
T PF05958_consen 276 SFKFDAVILDPPRAG-L-D----EKVIELIKK---L-KRIVYVSCNPATLARDLK 320 (352)
T ss_dssp CTTESEEEE---TT--S-C----HHHHHHHHH---S-SEEEEEES-HHHHHHHHH
T ss_pred hcCCCEEEEcCCCCC-c-h----HHHHHHHhc---C-CeEEEEECCHHHHHHHHH
Confidence 346899875321100 1 1 122333332 2 378888899888876664
No 235
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.30 E-value=0.0021 Score=61.63 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcC--CCCCEEEEECCCCChhHHHHH-HhcCCeEEEEeCChHHHHHHHHHhHhc-CCCceeEEEEcCCCCC
Q 018352 18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAE 93 (357)
Q Consensus 18 nwvks~Li~~~~--~~~~~VLDlGCG~G~~l~k~~-~~~~~~v~GiDiS~~~l~~A~~r~~~~-~~~~~v~f~~~D~~~~ 93 (357)
.|+...|-.... +...++||||||....--.+. +...-+++|+||++.+++.|++..+.+ .+..+++++...-...
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~ 166 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDN 166 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence 677765543221 125689999999874322222 223459999999999999999999887 6666788776543222
Q ss_pred chhhhhhhcCCcccEEEEccchhh
Q 018352 94 NFETQMQEKANQADLVCCFQHLQM 117 (357)
Q Consensus 94 ~~~~~l~~~~~~FDlV~~~~~lh~ 117 (357)
+...+......||+.+|+--+|-
T Consensus 167 -i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 167 -IFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp -STTTSTT--S-EEEEEE-----S
T ss_pred -cchhhhcccceeeEEecCCcccc
Confidence 22222223568999999987776
No 236
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.0016 Score=58.45 Aligned_cols=119 Identities=20% Similarity=0.121 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCC------CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC
Q 018352 18 EFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC 91 (357)
Q Consensus 18 nwvks~Li~~~~~------~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~ 91 (357)
-|.-...+.+++- .+.+|||+|.|.|-.....++++...++..|+.+..++..+-+.+.++ ..+.|...|+.
T Consensus 60 ~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~~ 137 (218)
T COG3897 60 AWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADLI 137 (218)
T ss_pred HHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeecccc
Confidence 4544444455432 578999999999977777777888899999999888777666666654 47888888876
Q ss_pred CCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352 92 AENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (357)
Q Consensus 92 ~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~ 151 (357)
. .+..||+|+..-. |-+...+.+++.-..++...|-.+++-.|....
T Consensus 138 g---------~~~~~Dl~LagDl----fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 138 G---------SPPAFDLLLAGDL----FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred C---------CCcceeEEEeece----ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 5 2478999998763 324455677777444444444455555565533
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.25 E-value=0.00035 Score=56.21 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=43.5
Q ss_pred EEECCCCChhHHHHHHh----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 36 CDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 36 LDlGCG~G~~l~k~~~~----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
||+||..|..+..+++. ...+++++|..+. .+.+++.+++.....+++++.+|... ....+. .++||+|..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~~~--~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD--FLPSLP--DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THH--HHHHHH--H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH--HHHHcC--CCCEEEEEE
Confidence 68999999777666553 2237999999995 22333333332333468999998743 222222 478999987
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
-. -|. .+.....++.+...|+|||++++.
T Consensus 76 Dg-~H~----~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DG-DHS----YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CC-CCC----HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 65 222 356778899999999999998864
No 238
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00043 Score=69.97 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=49.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCC
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC 91 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~ 91 (357)
+.+..+||++||+| .......++..+|+|++++++++..|+.....++.. +++|+++-+.
T Consensus 382 ~~~k~llDv~CGTG-~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE 441 (534)
T KOG2187|consen 382 PADKTLLDVCCGTG-TIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAE 441 (534)
T ss_pred CCCcEEEEEeecCC-ceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchh
Confidence 46789999999999 444445668889999999999999999988776653 8999999443
No 239
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.21 E-value=0.0083 Score=56.56 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=72.8
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++..|||+|+|.|..+..++... .+++++|+++.+++..++++... .+++++.+|+...+....+ ......|
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~~~---~~~~~~v 101 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYDLL---KNQPLLV 101 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGGHC---SSSEEEE
T ss_pred CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHHhh---cCCceEE
Confidence 378999999999999999988777 79999999999999999887632 3789999999886663221 1344455
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~ 157 (357)
+++- -|.. +. .++..+.. +..-|..-+...=..++.+|+-
T Consensus 102 v~Nl--Py~i-s~----~il~~ll~-~~~~g~~~~~l~vq~e~a~rl~ 141 (262)
T PF00398_consen 102 VGNL--PYNI-SS----PILRKLLE-LYRFGRVRMVLMVQKEVAERLL 141 (262)
T ss_dssp EEEE--TGTG-HH----HHHHHHHH-HGGGCEEEEEEEEEHHHHHHHH
T ss_pred EEEe--cccc-hH----HHHHHHhh-cccccccceEEEEehhhhhhcc
Confidence 5543 3312 22 34444444 2222433333333345556553
No 240
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.0066 Score=58.16 Aligned_cols=179 Identities=15% Similarity=0.141 Sum_probs=103.3
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhH--hcCCCceeE-EEEcCCCCCchhh-----------
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE--NQRKNFIAE-FFEADPCAENFET----------- 97 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~--~~~~~~~v~-f~~~D~~~~~~~~----------- 97 (357)
..+||-=|||.|+.+..++..++ .+-|=++|--|+-...-.+. ....++.+. |++.........+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 56899999999999999888776 67777888877743332221 110011111 1222111111100
Q ss_pred --------------------hhh--hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHH
Q 018352 98 --------------------QMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK 155 (357)
Q Consensus 98 --------------------~l~--~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~ 155 (357)
... ...+.||+|+..|. ..+....-..+..|..+|||||+.+-..|=
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF----IDTa~NileYi~tI~~iLk~GGvWiNlGPL------- 298 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF----IDTAHNILEYIDTIYKILKPGGVWINLGPL------- 298 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE----eechHHHHHHHHHHHHhccCCcEEEeccce-------
Confidence 000 12357999876662 445667888999999999999998743221
Q ss_pred HHHhHHhhhcCCCCCCCCCCCCccCCccEEEEeecccCCCCccceeeEeEEcCCcccCcccccchHHHHHHHHHcCCEEE
Q 018352 156 YQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYV 235 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~fgn~i~~~~y~i~f~~~~~~~p~fG~~Y~f~L~~~~~~~~eylv~~~~l~~la~e~Glelv 235 (357)
.|+|.-...+.+.+--=.+.+.+..+++..||+++
T Consensus 299 ---------------------------------------------lYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ 333 (369)
T KOG2798|consen 299 ---------------------------------------------LYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVE 333 (369)
T ss_pred ---------------------------------------------eeeccCCCCCcccccccccHHHHHHHHHhcCcEEE
Confidence 12221111111111112367889999999999999
Q ss_pred EecCchHHHHhhHHHHHHHHHhcCCCCCCCCCCCChhHHHHHhhheeEEEEe
Q 018352 236 EIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQK 287 (357)
Q Consensus 236 ~~~~f~~f~~~~~~~~~~~~~~~~~~~~~~~g~l~~~e~e~~~lY~~f~F~K 287 (357)
.......=|..| ..|.-++...+.|++.-+.+
T Consensus 334 ke~~Idt~Y~~n--------------------prsm~~~~Y~~~yw~~rk~~ 365 (369)
T KOG2798|consen 334 KERGIDTTYGTN--------------------PRSMMENRYQCHYWVLRKPC 365 (369)
T ss_pred EeeeeecccCCC--------------------HHHHhhhcccceeEEEeccc
Confidence 876443222222 23445777788887765544
No 241
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.09 E-value=0.00014 Score=65.66 Aligned_cols=93 Identities=20% Similarity=0.317 Sum_probs=65.3
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
..++||+|.|.|. +.+.....+.+|++.+.|..|..+.+++ .+++- -..+..+ .+-+||+|+|
T Consensus 113 ~~~lLDlGAGdGe-it~~m~p~feevyATElS~tMr~rL~kk------~ynVl-~~~ew~~---------t~~k~dli~c 175 (288)
T KOG3987|consen 113 PVTLLDLGAGDGE-ITLRMAPTFEEVYATELSWTMRDRLKKK------NYNVL-TEIEWLQ---------TDVKLDLILC 175 (288)
T ss_pred CeeEEeccCCCcc-hhhhhcchHHHHHHHHhhHHHHHHHhhc------CCcee-eehhhhh---------cCceeehHHH
Confidence 3689999999994 4444455667899999999998765443 11221 1111111 2457999999
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccC-CcEEEEE
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI 145 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~Lkp-GG~fi~t 145 (357)
...+.-++ +.-++|+.|+.+|+| .|+.|..
T Consensus 176 lNlLDRc~----~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 176 LNLLDRCF----DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHhhc----ChHHHHHHHHHHhccCCCcEEEE
Confidence 98777666 456789999999999 8887765
No 242
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.08 E-value=0.002 Score=54.32 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=45.4
Q ss_pred EEEEECCCCChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC
Q 018352 34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA 92 (357)
Q Consensus 34 ~VLDlGCG~G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~ 92 (357)
+|||+|||.|..+..++.... .+++++|+++.+.+.+++.++.++.. ++.++...+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999977776666543 48999999999999999988765432 47777777654
No 243
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.07 E-value=0.0006 Score=62.09 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=59.4
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
...|+|.-||.||.+..++.... .|++|||++.-|.-|+..++-.+...+++|+++|... +...++-....+|+|..
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld--~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD--LASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH--HHHHHhhhhheeeeeec
Confidence 45899999999999988766554 8999999999999999988877776799999999865 22233222234566655
Q ss_pred cc
Q 018352 112 FQ 113 (357)
Q Consensus 112 ~~ 113 (357)
..
T Consensus 172 sp 173 (263)
T KOG2730|consen 172 SP 173 (263)
T ss_pred CC
Confidence 44
No 244
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.008 Score=55.09 Aligned_cols=105 Identities=19% Similarity=0.089 Sum_probs=69.2
Q ss_pred HHHcCCC-CCEEEEECCCCChhHHHHH-HhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc
Q 018352 25 IKIYSHP-YVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (357)
Q Consensus 25 i~~~~~~-~~~VLDlGCG~G~~l~k~~-~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~ 102 (357)
+..+... +.+++|||+|.|--..-++ ..+..+++-+|....-+.--+......+. .+++++++.+....-
T Consensus 60 ~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~------- 131 (215)
T COG0357 60 LLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQ------- 131 (215)
T ss_pred hhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccc-------
Confidence 3334444 5899999999995444433 23445699999988766665555544433 268888887755221
Q ss_pred CCc-ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 103 ANQ-ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 103 ~~~-FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
... ||+|+|-. +.+ ...++.-+..++|+||.++..
T Consensus 132 ~~~~~D~vtsRA-----va~---L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 132 EKKQYDVVTSRA-----VAS---LNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ccccCcEEEeeh-----ccc---hHHHHHHHHHhcccCCcchhh
Confidence 123 99998875 333 445677778899999987644
No 245
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0045 Score=57.18 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCcee-EEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA-EFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v-~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++..+||+|.-|||++.-+++.+.++|+|+|..-..+..- .+. ..++ .+-..|+....-.. -.+..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~---d~rV~~~E~tN~r~l~~~~----~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRN---DPRVIVLERTNVRYLTPED----FTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---Hhc---CCcEEEEecCChhhCCHHH----cccCCCe
Confidence 37899999999999999999999999999999997655421 221 1122 23334443322111 1347899
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
++|-- +|.+ ...+|-.+..+++++|.++..+
T Consensus 148 ~v~Dv----SFIS---L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 148 IVIDV----SFIS---LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EEEEe----ehhh---HHHHHHHHHHhcCCCceEEEEe
Confidence 99877 4533 5678999999999999888663
No 246
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.97 E-value=0.0013 Score=58.58 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
...+.|+|.|+| .+...+.....+|++++.++.--+.|.+..+-.+ ..+++++.+|+...++ ...|+|+|
T Consensus 33 ~d~~~DLGaGsG-iLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~f--------e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSG-ILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDF--------ENADVVIC 102 (252)
T ss_pred hhceeeccCCcc-hHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-CcceEEEecccccccc--------cccceeHH
Confidence 478999999999 5555555567899999999999888888764333 2378999999988766 56899988
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
-. +.-++- .+....+++.+-.-||-.|.+|
T Consensus 103 Em-lDTaLi-~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 103 EM-LDTALI-EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HH-hhHHhh-cccccHHHHHHHHHhhcCCccc
Confidence 54 222221 2334457777888888888775
No 247
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.025 Score=51.15 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=85.0
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
++++.+||=||..+|....+...- +.+.++|+++|+.+....-...+... |+--+..|+....-... --+..|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---Ni~PIL~DA~~P~~Y~~---~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---NIIPILEDARKPEKYRH---LVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC---CceeeecccCCcHHhhh---hccccc
Confidence 357899999999999888888775 55789999999998876655554432 56668888876432222 235689
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE--------eCCchHHHHHH
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI--------TPDSSTIWAKY 156 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t--------~pd~~~i~~~~ 156 (357)
+|.+-- ....+++-+..|+..-||+||++++. |-++..+++.-
T Consensus 148 viy~DV------AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~e 198 (231)
T COG1889 148 VIYQDV------AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDE 198 (231)
T ss_pred EEEEec------CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHH
Confidence 987643 24668899999999999999987765 45556666543
No 248
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.87 E-value=0.0042 Score=56.46 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC
Q 018352 19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93 (357)
Q Consensus 19 wvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~ 93 (357)
|.-..||-+.- ...|+++|.-.||.+..|+.. +.++|+|+||.-...+ +.+.+......+++|+++|....
T Consensus 22 ~~~qeli~~~k--Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 22 VAYQELIWELK--PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp HHHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSST
T ss_pred HHHHHHHHHhC--CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCH
Confidence 33445555543 479999999999998877652 4579999999643322 12223222234799999999876
Q ss_pred chhhhhhhc--CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 94 NFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 94 ~~~~~l~~~--~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.....+... ...-.+|+- -+-|. . +...+.|+....++.+|+|+|+.
T Consensus 98 ~~~~~v~~~~~~~~~vlVil-Ds~H~-~---~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 98 EIVDQVRELASPPHPVLVIL-DSSHT-H---EHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp HHHHTSGSS----SSEEEEE-SS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHHHHHhhccCCceEEEE-CCCcc-H---HHHHHHHHHhCccCCCCCEEEEE
Confidence 654433222 123334443 33332 2 23556678899999999999876
No 249
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.0019 Score=56.31 Aligned_cols=120 Identities=15% Similarity=0.095 Sum_probs=78.2
Q ss_pred CCCEEEEECCCCChhHHHHHH--hcCCeEEEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~--~~~~~v~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
.+.+||++|.|--+.+..+.. +....|..+|=++++++..++....+. ...++.....+... ...+.....|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~----aqsq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG----AQSQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh----hHHHHhhCcc
Confidence 357899999986545544433 366789999999999998877554331 00111111111111 1112234689
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~ 158 (357)
|+|.|..++-+ .+....+++.|.++|+|.|.-++..|....-.+++.+
T Consensus 105 DiIlaADClFf----dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d 152 (201)
T KOG3201|consen 105 DIILAADCLFF----DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD 152 (201)
T ss_pred cEEEeccchhH----HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence 99999887654 4556788999999999999988888887554455544
No 250
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.011 Score=52.77 Aligned_cols=109 Identities=17% Similarity=0.033 Sum_probs=66.0
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc-CCCCCchhhhhh--hcC
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQ--EKA 103 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~-D~~~~~~~~~l~--~~~ 103 (357)
+.|+.+|||+||..|.-+.-..+. +.+.+.|||+-.- ..- .-+.++++ |+++......+- .++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~----~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPP----EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCC----CCcccccccccCCHHHHHHHHHhCCC
Confidence 458999999999999554433332 5678999998531 111 13455655 776654322221 146
Q ss_pred CcccEEEEccchhhc----c---CCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 104 NQADLVCCFQHLQMC----F---ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 104 ~~FDlV~~~~~lh~~----f---es~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.+.|+|++-.+-.-. . ...+-...++.-....++|+|.|++-+-+.
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 789999875421100 0 112233445555667789999999987665
No 251
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.71 E-value=0.018 Score=56.32 Aligned_cols=111 Identities=13% Similarity=0.018 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCChhHHHHHHhc-CCeEEEEeCChHHHHHHHHH--hHhcC----CCceeEEEEcCCCCCchhhhhhhcC
Q 018352 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WENQR----KNFIAEFFEADPCAENFETQMQEKA 103 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~-~~~v~GiDiS~~~l~~A~~r--~~~~~----~~~~v~f~~~D~~~~~~~~~l~~~~ 103 (357)
...+||-+|.|.|-.+..+.+-+ ..+++-+|+++.||+.+++. .+..+ ...+++++..|+.+. ++...
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w-----lr~a~ 363 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW-----LRTAA 363 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH-----HHhhc
Confidence 44689999999998888888775 88999999999999999842 22211 134788888887652 22245
Q ss_pred CcccEEEEccchhhccC-CHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 104 NQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 104 ~~FDlV~~~~~lh~~fe-s~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
..||+|+.-+-=-.-+. ..---..+..-+++.|+++|.++...
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 68999987542111000 00112457888999999999999873
No 252
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.66 E-value=0.014 Score=53.15 Aligned_cols=105 Identities=19% Similarity=0.075 Sum_probs=72.8
Q ss_pred CCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.++.+||.+|-|-|-...+...++...=+-|+..++.++..+...-.. ..++-...+--.+ ....+ +++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeD--vl~~L--~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWED--VLNTL--PDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHh--hhccc--cccCccee
Confidence 478999999999997777777777777788999999988776643221 2245444442211 11112 45779998
Q ss_pred EEccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 110 CCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 110 ~~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.--- | +..++.+.+.+.+.++|||+|+|-..
T Consensus 174 ~yDT-----y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 174 YYDT-----YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred Eeec-----hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 6422 2 44578999999999999999998655
No 253
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.61 E-value=0.011 Score=50.47 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=57.0
Q ss_pred eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhc-------cCCHHHHHHH
Q 018352 56 NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC-------FETEERARRL 128 (357)
Q Consensus 56 ~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~-------fes~~~~~~~ 128 (357)
+|+|+||-+++|+.+++|.++.....+++++..+=.. +...++ .+++|+|+-+ +-|+ ....+.-..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~--~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIP--EGPVDAAIFN--LGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT----S--EEEEEEE--ESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCc--cCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHH
Confidence 5899999999999999999887655578888775322 322222 2579998644 3442 2234556678
Q ss_pred HHHHHhcccCCcEEEEEe
Q 018352 129 LQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 129 L~~i~~~LkpGG~fi~t~ 146 (357)
++.+.++|+|||+++++.
T Consensus 75 l~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhccCCEEEEEE
Confidence 999999999999998884
No 254
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.59 E-value=0.017 Score=55.65 Aligned_cols=81 Identities=15% Similarity=0.042 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD 107 (357)
.++..++|.=||.||++..++.. +.++|+|+|.++.+++.|+++.+.. ..++.+++++.... ...+.. ...++|
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l--~~~l~~~~~~~vD 94 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANF--FEHLDELLVTKID 94 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHH--HHHHHhcCCCccc
Confidence 46789999999999999998876 3479999999999999999987653 23678888876542 222221 235689
Q ss_pred EEEEccc
Q 018352 108 LVCCFQH 114 (357)
Q Consensus 108 lV~~~~~ 114 (357)
.|+...+
T Consensus 95 gIl~DLG 101 (305)
T TIGR00006 95 GILVDLG 101 (305)
T ss_pred EEEEecc
Confidence 8887553
No 255
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.029 Score=54.94 Aligned_cols=122 Identities=16% Similarity=0.053 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHh---c--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh---hhhhh
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE---TQMQE 101 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~---~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~---~~l~~ 101 (357)
+++.+|||+|...|+=+..++.+ . .+.+++=|++..-+.......+.. ...+..+...|+...+-. +.-+.
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-PSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-CCcceeeecccceeccccccccCchh
Confidence 48999999999999877766665 2 238999999988777666655321 122344444444332211 00011
Q ss_pred cCCcccEEEEcc-----c-hh---hccCC----------HHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352 102 KANQADLVCCFQ-----H-LQ---MCFET----------EERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (357)
Q Consensus 102 ~~~~FDlV~~~~-----~-lh---~~fes----------~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i 152 (357)
....||-|.|-- + +. ..|.. ..-.-++|++..++||+||.++-+|++-+.|
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 235789888722 1 00 00100 0113468999999999999999998776544
No 256
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.53 E-value=0.021 Score=55.92 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=30.9
Q ss_pred cCCcccEEEEccchhhccC------C-----------------------------HHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 102 KANQADLVCCFQHLQMCFE------T-----------------------------EERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 102 ~~~~FDlV~~~~~lh~~fe------s-----------------------------~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
++++.|++.+.+++||+=. + .++...+|+.=++-|+|||+++++.
T Consensus 104 P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 183 (334)
T PF03492_consen 104 PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRMVLTF 183 (334)
T ss_dssp -TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEEEEEE
Confidence 5789999999999999510 0 1234457777778899999999884
No 257
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.49 E-value=0.021 Score=58.71 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCChhHHHHHHh---c--CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~---~--~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
+..+|+|-+||+|+.+...... . ...++|.++++.....|+...--++...++....+|....+.... ....+.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-cCCccc
Confidence 5679999999999988765543 2 257999999999999998876544333234556666555443211 112467
Q ss_pred ccEEEEccchh---hc-----------------cCCHHHH-HHHHHHHHhcccCCcEEEEEeCCc
Q 018352 106 ADLVCCFQHLQ---MC-----------------FETEERA-RRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 106 FDlV~~~~~lh---~~-----------------fes~~~~-~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
||.|+++--+- |. +...... ..+++.+...|+|||+.-+..|+.
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 99888754321 10 1112223 689999999999999655565554
No 258
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.29 E-value=0.085 Score=48.31 Aligned_cols=112 Identities=11% Similarity=0.015 Sum_probs=81.1
Q ss_pred HHHcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcC
Q 018352 25 IKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (357)
Q Consensus 25 i~~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~ 103 (357)
+..+++.+.++.|+||-.|.....+.+. ....+++.|+++..++.|.+..+..+...+++...+|... .+. .+
T Consensus 10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~-----~~ 83 (226)
T COG2384 10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLE-----LE 83 (226)
T ss_pred HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccC-----cc
Confidence 4456667777999999999777777665 5678999999999999999999888776678888888744 231 34
Q ss_pred CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
..+|+|+... | .-.....+|.+-.+.|+.=-+|+. -||.
T Consensus 84 d~~d~ivIAG----M--GG~lI~~ILee~~~~l~~~~rlIL-QPn~ 122 (226)
T COG2384 84 DEIDVIVIAG----M--GGTLIREILEEGKEKLKGVERLIL-QPNI 122 (226)
T ss_pred CCcCEEEEeC----C--cHHHHHHHHHHhhhhhcCcceEEE-CCCC
Confidence 5799988765 1 123466677777777764434444 4555
No 259
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.11 E-value=0.046 Score=54.38 Aligned_cols=114 Identities=14% Similarity=0.037 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++.+|||+|+..||=+...+.. ..+.|++.|.+..-++..+..+...+.. +......|....+- .. -.++||-
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~--~~--~~~~fDR 315 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPE--KE--FPGSFDR 315 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccc--cc--cCcccce
Confidence 6889999999999877766554 5668999999999999888887776532 45556677653221 11 1247998
Q ss_pred EEE----cc--chh--hc---cCCH-------HHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 109 VCC----FQ--HLQ--MC---FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 109 V~~----~~--~lh--~~---fes~-------~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|.. .. .+. -+ ..+. .-.+++|-.+.+++++||+++-+|+.-
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 873 22 100 00 1111 124678999999999999999876543
No 260
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.08 E-value=0.02 Score=53.51 Aligned_cols=107 Identities=18% Similarity=0.141 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++..+|+|||||.=-.+..|... ....|+|+||+..+++....-....+. +.++...|+.... +....|+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-------~~~~~Dl 174 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-------PKEPADL 174 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-------TTSEESE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-------CCCCcch
Confidence 35789999999988777777654 345999999999999988776655432 5566777887653 3578999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
....=.+|. + +.+.+..--++-+.+.. =.++++.|-.
T Consensus 175 aLllK~lp~-l--e~q~~g~g~~ll~~~~~-~~~vVSfPtr 211 (251)
T PF07091_consen 175 ALLLKTLPC-L--ERQRRGAGLELLDALRS-PHVVVSFPTR 211 (251)
T ss_dssp EEEET-HHH-H--HHHSTTHHHHHHHHSCE-SEEEEEEES-
T ss_pred hhHHHHHHH-H--HHHhcchHHHHHHHhCC-CeEEEecccc
Confidence 988777776 3 22222222223333332 2566666653
No 261
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.01 E-value=0.09 Score=48.06 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=63.8
Q ss_pred CCCEEEEECCCCChhHHHHHH---hcCCeEEEEeCChHHHHHHHHHhHh-------------------------------
Q 018352 31 PYVTVCDLYCGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWEN------------------------------- 76 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~---~~~~~v~GiDiS~~~l~~A~~r~~~------------------------------- 76 (357)
...++-|-|||.|..+.-+.- .....|+|.||++++|+.|+++..-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 456899999999976654332 2567899999999999999874310
Q ss_pred ----------cCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhc--cC---CHHHHHHHHHHHHhcccCCcE
Q 018352 77 ----------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC--FE---TEERARRLLQNVSSLLKPGGY 141 (357)
Q Consensus 77 ----------~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~--fe---s~~~~~~~L~~i~~~LkpGG~ 141 (357)
.+-.......++|++......... .....|+|+.-.-.-.+ ++ +.+-..+||.+++.+|-.+++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 011334678889998755433332 23456999874321111 22 244567899999999944444
Q ss_pred EEE
Q 018352 142 FLG 144 (357)
Q Consensus 142 fi~ 144 (357)
+.+
T Consensus 210 V~v 212 (246)
T PF11599_consen 210 VAV 212 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 262
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.94 E-value=0.41 Score=44.54 Aligned_cols=119 Identities=14% Similarity=-0.033 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
.+.+||=||=+.-..+...+.....+|+.+||++..|+.-++..+..+. +++.+..|+.. ++... -.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~-~LP~~---~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRD-PLPEE---LRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TT---TSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEecccc-cCCHH---HhcCCCEEE
Confidence 6789999986544222222233567999999999999998888877654 58889999876 33211 248999998
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCc-EEEEE--eCC-chHHHHHHHHhH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGI--TPD-SSTIWAKYQKNV 160 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG-~fi~t--~pd-~~~i~~~~~~~~ 160 (357)
+.- -++.+-..-++......||.-| ..++. .-. +...|..+++..
T Consensus 118 TDP-----PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l 166 (243)
T PF01861_consen 118 TDP-----PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFL 166 (243)
T ss_dssp E--------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHH
T ss_pred eCC-----CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHH
Confidence 865 3477889999999999999766 32322 222 244555666543
No 263
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.90 E-value=0.25 Score=47.45 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=41.8
Q ss_pred CCCCEEEEECCCCChhHHHHHHhc--CCeEEEEeCChHHHHHHHHHhHh
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWEN 76 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~~--~~~v~GiDiS~~~l~~A~~r~~~ 76 (357)
.++...+|.--|.||.+..++... .++++|+|-++.+|+.|+++...
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~ 70 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE 70 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence 477899999999999999998874 46899999999999999998865
No 264
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.86 E-value=0.025 Score=51.21 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=65.6
Q ss_pred CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC------CceeEEEEcCCCCCchhhhhhhcCC
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK------NFIAEFFEADPCAENFETQMQEKAN 104 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~------~~~v~f~~~D~~~~~~~~~l~~~~~ 104 (357)
...+.|||||-|+.+.++... +..-+.|.+|-...-+..++|+...+. ..++.+...++.. +-..+- ..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk--~lpn~f-~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK--FLPNFF-EKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh--hccchh-hhc
Confidence 357999999999999988766 556789999999988888888876431 1133444444322 100000 011
Q ss_pred ccc-EEEEccchhhccCCHH-----HHHHHHHHHHhcccCCcEEEEEe
Q 018352 105 QAD-LVCCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 105 ~FD-lV~~~~~lh~~fes~~-----~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+-+ ..+|.---|. - ... -...++.+..-+|++||.++.++
T Consensus 138 qLskmff~fpdpHf-k-~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHF-K-ARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhH-h-hhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 111 1222222222 0 000 02358899999999999988664
No 265
>PRK11524 putative methyltransferase; Provisional
Probab=95.85 E-value=0.029 Score=53.51 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=44.6
Q ss_pred HHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh
Q 018352 21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (357)
Q Consensus 21 ks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~ 76 (357)
-..+|..+..++..|||--||+|..+....+. ..+++|+|++++.++.|++|+..
T Consensus 198 ~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 198 LKRIILASSNPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 34566777789999999999999666555444 45999999999999999999853
No 266
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.82 E-value=0.24 Score=49.41 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=33.6
Q ss_pred cCCcccEEEEccchhhccCC----------------------------------HHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 102 KANQADLVCCFQHLQMCFET----------------------------------EERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 102 ~~~~FDlV~~~~~lh~~fes----------------------------------~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
+.++.+++.+.+++||+=.- ..+...+|+.=++-|+|||++++++.
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 56889999999999994210 01234567777788999999998853
No 267
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.75 E-value=0.03 Score=50.43 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHH
Q 018352 20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72 (357)
Q Consensus 20 vks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~ 72 (357)
+-..+|..+..++..|||.-||+|..+......+ .+++|+|++++..+.|++
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence 3445667778899999999999996666655544 489999999999999874
No 268
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.66 E-value=0.035 Score=55.28 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
...+|||.=+|+|-=...|+.. +..+|+.-|+|+++++..++..+.++... .++..+.|+... +......||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l-----l~~~~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL-----LYSRQERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH-----HCHSTT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH-----hhhccccCC
Confidence 3569999999999655555544 56799999999999999999988776655 577888886431 111357899
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~ 151 (357)
+|=.-- |.+ +..+|..+.+.++.||++.+|.-|...
T Consensus 124 ~IDlDP-----fGS---p~pfldsA~~~v~~gGll~vTaTD~a~ 159 (377)
T PF02005_consen 124 VIDLDP-----FGS---PAPFLDSALQAVKDGGLLCVTATDTAV 159 (377)
T ss_dssp EEEE-------SS-----HHHHHHHHHHEEEEEEEEEEE--HHH
T ss_pred EEEeCC-----CCC---ccHhHHHHHHHhhcCCEEEEecccccc
Confidence 995432 433 556899999999999999999666543
No 269
>PRK10742 putative methyltransferase; Provisional
Probab=95.66 E-value=0.038 Score=51.71 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHcC--CCCC--EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc------CC--C
Q 018352 13 HHRLYEFAKTALIKIYS--HPYV--TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------RK--N 80 (357)
Q Consensus 13 ~~~~~nwvks~Li~~~~--~~~~--~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~------~~--~ 80 (357)
++|....-+...|.+-+ +++. +|||+-+|.|.+...++..+. .|+++|-++......++..+.. .. .
T Consensus 66 ~rR~~~~g~~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~ 144 (250)
T PRK10742 66 HRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQ 144 (250)
T ss_pred HHHHhcCCCccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhh
Confidence 33433333334444433 3555 899999999999999888877 5999999999887776655431 11 1
Q ss_pred ceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352 81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (357)
Q Consensus 81 ~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~ 113 (357)
.+++++.+|... + +.....+||+|.+--
T Consensus 145 ~ri~l~~~da~~--~---L~~~~~~fDVVYlDP 172 (250)
T PRK10742 145 ERLQLIHASSLT--A---LTDITPRPQVVYLDP 172 (250)
T ss_pred ceEEEEeCcHHH--H---HhhCCCCCcEEEECC
Confidence 357778887643 1 111234799999876
No 270
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.56 E-value=0.11 Score=50.19 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=79.5
Q ss_pred CEEEEECCCCChhHHHHHHhc------------C---------CeEEEEeCChHH--HHHHHHHhHhc------------
Q 018352 33 VTVCDLYCGAGVDVDKWETAL------------I---------ANYIGIDVATSG--IGEARDTWENQ------------ 77 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~------------~---------~~v~GiDiS~~~--l~~A~~r~~~~------------ 77 (357)
.+||-||.|.|..+..++..- . -+++.|||++-. ++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987665443210 1 279999998743 22222222211
Q ss_pred ----CCCceeEEEEcCCCCCchhhhhhh-cCCcccEEEEccchhhcc-CCHHHHHHHHHHHHhcccCCcEEEEE-eCCc
Q 018352 78 ----RKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGI-TPDS 149 (357)
Q Consensus 78 ----~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FDlV~~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~fi~t-~pd~ 149 (357)
...+++.|.+.|+......+...- .....|+|+..|.++-.| ++..+..++|.++...++||-.+++. .|.+
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 235689999999988655321100 113689999999988766 45777889999999999999998876 4444
No 271
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.55 E-value=0.035 Score=52.76 Aligned_cols=73 Identities=19% Similarity=0.094 Sum_probs=54.7
Q ss_pred EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (357)
Q Consensus 34 ~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~ 113 (357)
+|+|+.||.|+...-+..+++..+.++|+++.+++..+.++.. ..+.+|+....... ....+|+++..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~----~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD----FIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh----cCCCCCEEEeCC
Confidence 6999999999998888888888899999999998877766532 14667776644311 035699999877
Q ss_pred chhh
Q 018352 114 HLQM 117 (357)
Q Consensus 114 ~lh~ 117 (357)
..+.
T Consensus 71 PCq~ 74 (275)
T cd00315 71 PCQP 74 (275)
T ss_pred CChh
Confidence 5543
No 272
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.0075 Score=52.21 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=48.3
Q ss_pred cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHh
Q 018352 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159 (357)
Q Consensus 102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~ 159 (357)
.+++.|+|.|-.++.+ + +.+.-..+++.+++.|||||++-+..||...+...|+..
T Consensus 44 ~dns~d~iyaeHvlEH-l-t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~ 99 (185)
T COG4627 44 EDNSVDAIYAEHVLEH-L-TYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHD 99 (185)
T ss_pred CCcchHHHHHHHHHHH-H-hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhh
Confidence 4689999998887776 4 467788999999999999999999999999988888754
No 273
>PRK13699 putative methylase; Provisional
Probab=95.42 E-value=0.06 Score=49.79 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=45.0
Q ss_pred HHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc
Q 018352 22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ 77 (357)
Q Consensus 22 s~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~ 77 (357)
..+|..+..++..|||--||+|..+......+ .+++|+|++++..+.|.+|++..
T Consensus 154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHH
Confidence 45666777899999999999997666655544 48999999999999999998653
No 274
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.16 E-value=0.015 Score=47.38 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=31.0
Q ss_pred cccEEEEccchhhc--cCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 105 QADLVCCFQHLQMC--FETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~~--fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+||+|+|..+.-|. --..+-...+++.+++.|+|||+||+-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 49999998763321 113566889999999999999999987
No 275
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.64 E-value=0.11 Score=50.91 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHHHHcCCC-CCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc
Q 018352 11 LTHHRLYEFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA 88 (357)
Q Consensus 11 ~p~~~~~nwvks~Li~~~~~~-~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~ 88 (357)
+|..++|.=+--.+++.+.+. ..+|||-=||+|-=...++. .+..+++.-|+|+.+++.+++..+.+. ..+...+..
T Consensus 31 NP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~ 109 (380)
T COG1867 31 NPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINK 109 (380)
T ss_pred CchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecc
Confidence 455566655555566666543 57999999999954444433 355589999999999999999887652 224555556
Q ss_pred CCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 89 D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|+...-. .....||+|=.-- |.+ +--++..+.+.++.||++.+|.-|.
T Consensus 110 DAN~lm~-----~~~~~fd~IDiDP-----FGS---PaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 110 DANALLH-----ELHRAFDVIDIDP-----FGS---PAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred hHHHHHH-----hcCCCccEEecCC-----CCC---CchHHHHHHHHhhcCCEEEEEeccc
Confidence 6533111 1237899984432 333 3346777777888899999995554
No 276
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.37 Score=41.64 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
+..+.+|||.|.|+.....++.+...-+|+++++-.+..++-+.-..+......|..-|+...++ ..|..|+
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl--------~dy~~vv 143 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL--------RDYRNVV 143 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc--------cccceEE
Confidence 45789999999999888887777668899999999998887765444444467788888877666 3355554
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE-eCCc
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS 149 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t-~pd~ 149 (357)
++. .++-+..+-..+..-|..+-.++.+ +|=.
T Consensus 144 iFg-------aes~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 144 IFG-------AESVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred Eee-------hHHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 433 2222333444455566777777766 4433
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.29 E-value=0.41 Score=46.90 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=64.3
Q ss_pred cCCCCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 28 YSHPYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 28 ~~~~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
.++|+.+|+=+|+| | ..+.+++++-..+|+++|.|++-++.|++.-.. .++... ..+....+ .+.
T Consensus 163 ~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~--~~~~~~~~---~~~ 229 (339)
T COG1064 163 NVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSS--DSDALEAV---KEI 229 (339)
T ss_pred CCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcC--CchhhHHh---Hhh
Confidence 35689999999999 5 455677776448999999999999988876432 223322 11221111 234
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
||+|+..-. .+ .+....+.|++||.++..
T Consensus 230 ~d~ii~tv~-~~----------~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 230 ADAIIDTVG-PA----------TLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CcEEEECCC-hh----------hHHHHHHHHhcCCEEEEE
Confidence 999987664 33 356677799999999877
No 278
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.27 E-value=0.12 Score=47.76 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=58.6
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhc-CCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~-~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
++.++||||.|.- =+..+.-. ..-+.+|.||++.+++.|+.....+ +....++.....-.. .+...+....+.||
T Consensus 78 ~~i~~LDIGvGAn-CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~-~if~giig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGAN-CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD-AIFNGIIGKNERYD 155 (292)
T ss_pred CceEEEeeccCcc-cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc-ccccccccccceee
Confidence 5679999998864 22222211 2338999999999999999988765 333334443221111 11122222468999
Q ss_pred EEEEccchhhccCCHHHHHHHH
Q 018352 108 LVCCFQHLQMCFETEERARRLL 129 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L 129 (357)
++.|+--+|- +.+++++.-
T Consensus 156 ~tlCNPPFh~---s~~da~~gs 174 (292)
T COG3129 156 ATLCNPPFHD---SAADARAGS 174 (292)
T ss_pred eEecCCCcch---hHHHHHhcc
Confidence 9999998887 566665543
No 279
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.10 E-value=0.35 Score=46.26 Aligned_cols=122 Identities=13% Similarity=0.038 Sum_probs=81.4
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCC---CceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~---~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
...+||=||-|.|+.+..-.++ ...++.-+||....++..++-.+.... ..++...-+|... +-..+ +.++|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~--~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDL--KENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHh--ccCCc
Confidence 4578999999999998876666 567899999999999888876654321 2367778887643 22222 35899
Q ss_pred cEEEEccchhhccCC-HHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352 107 DLVCCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (357)
Q Consensus 107 DlV~~~~~lh~~fes-~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~ 158 (357)
|+|+.--.=-- -.. .--.+.+++.+.+.||+||+.+... ++-.+..++-+
T Consensus 197 dVii~dssdpv-gpa~~lf~~~~~~~v~~aLk~dgv~~~q~-ec~wl~~~~i~ 247 (337)
T KOG1562|consen 197 DVIITDSSDPV-GPACALFQKPYFGLVLDALKGDGVVCTQG-ECMWLHLDYIK 247 (337)
T ss_pred eEEEEecCCcc-chHHHHHHHHHHHHHHHhhCCCcEEEEec-ceehHHHHHHH
Confidence 99975321000 000 1124678899999999999998775 44444444433
No 280
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.86 Score=42.71 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=69.7
Q ss_pred CCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
..+.+|+|.|+..-+..++.+ ...+|+.+|+|...++...+.+........+.-+++|... .+.. .++.-
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~----~~~~~ 153 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAE----LPRGG 153 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhc----ccCCC
Confidence 679999999998766655554 2358999999999997654444333223345555666432 1111 11222
Q ss_pred cE--EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DL--VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 Dl--V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
-- +....++.+ | +.+....+|..+...|+||-+|++-
T Consensus 154 ~Rl~~flGStlGN-~-tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 154 RRLFVFLGSTLGN-L-TPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred eEEEEEecccccC-C-ChHHHHHHHHHHHhcCCCcceEEEe
Confidence 22 223334666 5 6778999999999999999998865
No 281
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.08 E-value=1.3 Score=41.84 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=71.3
Q ss_pred CEEEEECCCCChhHHHHHHhcCCeEEEEeCChH-HHHHHHHHhHhcC--CCceeEEEEcCCCCCchhhhhhhc---CCcc
Q 018352 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATS-GIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQA 106 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~-~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~l~~~---~~~F 106 (357)
..|+.||||- |+..+.......+.-+|++-. .++.-++.++..+ ...+..++.+|+. ......+... ...-
T Consensus 83 ~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 83 RQVVILGAGL--DTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAP 159 (260)
T ss_pred cEEEEeCCcc--ccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCC
Confidence 4799999996 454443322113444555444 3444444454321 1346788999987 4443433321 2334
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
-++++-.++.| + +.+...++++.+.+...||+.+++...+.
T Consensus 160 tl~i~EGvl~Y-L-~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 160 TAWLWEGLLMY-L-TEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeeeecchhhc-C-CHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 57778888888 6 67889999999999999999999886553
No 282
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.01 E-value=0.23 Score=48.62 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=63.8
Q ss_pred CCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
..+|||+|.|.|.-+...... ....++.++.|+..-+......+ +-.......-..|++...+ .-..-|.+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~-nv~t~~td~r~s~vt~dRl------~lp~ad~y 186 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAE-NVSTEKTDWRASDVTEDRL------SLPAADLY 186 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHh-hcccccCCCCCCccchhcc------CCCcccee
Confidence 467999999998443322111 22355666666544333322222 1111112223333333222 12345555
Q ss_pred EEccchhhcc--CCHHHHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHh
Q 018352 110 CCFQHLQMCF--ETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN 159 (357)
Q Consensus 110 ~~~~~lh~~f--es~~~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~ 159 (357)
.+..++|-.. .++......++.+..++.|||.|+++ +|-.-.++.+.++.
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ 241 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQI 241 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHH
Confidence 5555555433 33444566899999999999999999 44444455555543
No 283
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.67 E-value=1.4 Score=43.87 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCChhH----HHHHHh----cCCeEEEEeC----ChHHHHHHHHHhHhc--CCCceeEEEE--cC-CCCC
Q 018352 31 PYVTVCDLYCGAGVDV----DKWETA----LIANYIGIDV----ATSGIGEARDTWENQ--RKNFIAEFFE--AD-PCAE 93 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l----~k~~~~----~~~~v~GiDi----S~~~l~~A~~r~~~~--~~~~~v~f~~--~D-~~~~ 93 (357)
...+|+|+|.|.|.-- ..++.. +.-++|||+. +...++.+.++...- ......+|.. .+ ....
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 4568999999999422 222222 2237999999 889999988876542 1122334443 22 2111
Q ss_pred chhhhhhhcCCcccEEEEccchhhccCCH---H-HHHHHHHHHHhcccCCcEEEEE---eCCchHHHHHHHHhH
Q 018352 94 NFETQMQEKANQADLVCCFQHLQMCFETE---E-RARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV 160 (357)
Q Consensus 94 ~~~~~l~~~~~~FDlV~~~~~lh~~fes~---~-~~~~~L~~i~~~LkpGG~fi~t---~pd~~~i~~~~~~~~ 160 (357)
.. ..+....+..=+|.|.+.+|++.... + ....+|+.| +.|+|.-..++. ..|+..+..|+.+.+
T Consensus 190 ~~-~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ea~~n~~~F~~RF~eal 261 (374)
T PF03514_consen 190 DP-SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQEADHNSPSFLERFREAL 261 (374)
T ss_pred CH-HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEeecCCCCCCchHHHHHHHH
Confidence 11 12222345566777888899965221 1 234466555 578998555444 234456666666554
No 284
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.58 E-value=0.34 Score=43.79 Aligned_cols=109 Identities=22% Similarity=0.100 Sum_probs=59.9
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHH----HHHH--hHhcCCCceeEEEEcCCCCCchhhhhh
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGE----ARDT--WENQRKNFIAEFFEADPCAENFETQMQ 100 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~----A~~r--~~~~~~~~~v~f~~~D~~~~~~~~~l~ 100 (357)
++++.+|+|+--|.|..+.-+... ..+.|+++=..+...=. .+.+ .++. ..-+.+.+-.+.....
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~~~~A~~------ 118 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGKPLVALG------ 118 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCCcccccC------
Confidence 357899999999999776665543 33467766554431110 0000 0000 0012222323322221
Q ss_pred hcCCcccEEEEcc---chhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 101 EKANQADLVCCFQ---HLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 101 ~~~~~FDlV~~~~---~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
..+..|++.... .+|.-+-+...+.++...+++.|||||.+++.
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 234455554422 23333334566888999999999999999876
No 285
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.20 E-value=0.27 Score=47.59 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~ 105 (357)
..++..++|.--|.||.+..++.. +.++++|+|.++++++.|+++.... ..++.+++++..+ +...+.. ....
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~--l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN--LDEYLKELNGINK 93 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG--HHHHHHHTTTTS-
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH--HHHHHHHccCCCc
Confidence 347789999999999999999876 5589999999999999998887643 2367777776543 2222221 1246
Q ss_pred ccEEEE
Q 018352 106 ADLVCC 111 (357)
Q Consensus 106 FDlV~~ 111 (357)
+|.|+.
T Consensus 94 ~dgiL~ 99 (310)
T PF01795_consen 94 VDGILF 99 (310)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 776665
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.08 E-value=0.28 Score=48.59 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=65.6
Q ss_pred CCCCEEEEECCCC-ChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-chhhhhhh--cCC
Q 018352 30 HPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KAN 104 (357)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-~~~~~l~~--~~~ 104 (357)
.++.+||.+|||. |..+..+++... .+++++|.+++.++.+++... +.++. .... .+...+.. ...
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-------~~vi~--~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-------AETIN--FEEVDDVVEALRELTGGR 253 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEEc--CCcchHHHHHHHHHcCCC
Confidence 4678999999987 666667766643 469999999999988877531 12221 1111 12222211 224
Q ss_pred cccEEEEccchh-------h----ccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 105 QADLVCCFQHLQ-------M----CFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 105 ~FDlV~~~~~lh-------~----~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
.+|+|+..-.-+ . .+....+....+..+.++|+++|.++...
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 699987643211 1 01111122456788889999999998763
No 287
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.06 E-value=0.058 Score=54.69 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++.+|||.=|++|-.+..|+.. +..++++-|.++.+++..++..+.+.....++-.+.|+...-.. .+.....||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~--~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE--HPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh--ccccccccce
Confidence 3568999999999888888775 67899999999999998888877664444455556665432221 1112478999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCch
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~ 150 (357)
|=.-- |. ....+|..+.+.++.||.+.+|.-|..
T Consensus 187 IDLDP-----yG---s~s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 187 IDLDP-----YG---SPSPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred EecCC-----CC---CccHHHHHHHHHhhcCCEEEEEecchH
Confidence 84322 22 345678888999999999999966643
No 288
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.82 E-value=0.82 Score=42.36 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=72.0
Q ss_pred CCEEEEECCCCChhHHHHHHh-----c-----CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh-hh
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-----L-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQ 100 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-----~-----~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~-l~ 100 (357)
-.+|.|||...|....-+.+. . ...+++||+.+-+ ....+.-+++|+++...... +.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC------------ccCceEEeecccCCHhHHHHHHH
Confidence 358999999999655444332 1 1239999997532 11246678999988654322 11
Q ss_pred h-cCCcccEEEEcc-----chhhccCC---HHHHHHHHHHHHhcccCCcEEEEEeCCc---hHHHHHHHH
Q 018352 101 E-KANQADLVCCFQ-----HLQMCFET---EERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK 158 (357)
Q Consensus 101 ~-~~~~FDlV~~~~-----~lh~~fes---~~~~~~~L~~i~~~LkpGG~fi~t~pd~---~~i~~~~~~ 158 (357)
. ..++.|+|+|-. ++|- +.. .+-...+|.-...+|||||.|+.-+... ..|+..++.
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd-~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHD-LDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK 178 (294)
T ss_pred HhCCCCccEEEeCCCCCcccccc-HHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence 1 246899999965 4675 211 2234456777789999999999875443 455555543
No 289
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=92.65 E-value=0.52 Score=43.90 Aligned_cols=107 Identities=15% Similarity=0.061 Sum_probs=72.7
Q ss_pred HcCCCCCEEEEECCCCChhHHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCC
Q 018352 27 IYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (357)
Q Consensus 27 ~~~~~~~~VLDlGCG~G~~l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~ 104 (357)
.+++++.+||=||++.|.......+. +-.-|++++.|.-+=.....-.+.. .|+--+.-|+....-..- .-.
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRm---lVg 225 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRM---LVG 225 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheee---eee
Confidence 34568999999999999877777664 4567999999975533322222211 256667778766332110 124
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
..|+|++-- ...++++.+.-|++--||+||.|++.
T Consensus 226 mVDvIFaDv------aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 226 MVDVIFADV------AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eEEEEeccC------CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 677775533 34677888899999999999999988
No 290
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.47 E-value=0.74 Score=44.68 Aligned_cols=103 Identities=11% Similarity=0.096 Sum_probs=63.2
Q ss_pred CCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-Cchhhhhhh--cCC
Q 018352 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE--KAN 104 (357)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~--~~~ 104 (357)
+++.+||=+|+|. |-.+..++++ +.++|+.+|+++.-|+.|++ +-. .+......... ..+.+.+.. ...
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-----~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-----TVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-----eEEeeccccccHHHHHHHHHhhcccc
Confidence 4689999999996 5455566665 88899999999999999988 422 11111111111 111111111 124
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
.+|+++-...++- .++..-..+|+||.++.....
T Consensus 242 ~~d~~~dCsG~~~----------~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 242 QPDVTFDCSGAEV----------TIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred CCCeEEEccCchH----------HHHHHHHHhccCCEEEEeccC
Confidence 5888775554443 345556789999997666433
No 291
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=92.39 E-value=0.88 Score=42.66 Aligned_cols=109 Identities=17% Similarity=0.016 Sum_probs=62.5
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh----cCCCceeEEEEcCCCCCchhhhhhhcCCc-c
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN----QRKNFIAEFFEADPCAENFETQMQEKANQ-A 106 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~----~~~~~~v~f~~~D~~~~~~~~~l~~~~~~-F 106 (357)
..+||++|.|+|-....++.....+|+..|+..........+-.. .+....+.....+-....-.+. .... |
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~---~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF---RLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh---ccCCcc
Confidence 457999999999666666665677999999987665443332211 1111133333333222111111 1223 9
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
|+|++.-++-. ++...-++..++..|-.+|..++.++
T Consensus 164 DlilasDvvy~----~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 164 DLILASDVVYE----EESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred cEEEEeeeeec----CCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99998775432 33445567777788888885555443
No 292
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.39 E-value=0.27 Score=46.83 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=51.4
Q ss_pred EEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEcc
Q 018352 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (357)
Q Consensus 34 ~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~ 113 (357)
+|+||.||.|+...-+..+++..+.++|+++.+.+.-+..+. ....+|+...... .++ . .+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l~--~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DLP--K-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HHH--H-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccc-ccc--c-cceEEEecc
Confidence 799999999999999999998889999999997776655553 5688898776543 222 2 599998755
Q ss_pred chh
Q 018352 114 HLQ 116 (357)
Q Consensus 114 ~lh 116 (357)
-.+
T Consensus 70 PCQ 72 (335)
T PF00145_consen 70 PCQ 72 (335)
T ss_dssp --T
T ss_pred CCc
Confidence 433
No 293
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=92.03 E-value=0.45 Score=44.20 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=44.9
Q ss_pred CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHH---HHhHhcCCC-----ceeEEEEcCCCCCchhhhhhhcCC
Q 018352 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRKN-----FIAEFFEADPCAENFETQMQEKAN 104 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~---~r~~~~~~~-----~~v~f~~~D~~~~~~~~~l~~~~~ 104 (357)
.+|||.-||-|.|+.-++..+. +|++++-|+.+-...+ +++...... .+++++++|....- ...+.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L-----~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL-----RQPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC-----CCHSS
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH-----hhcCC
Confidence 4899999999999998876665 8999999987655443 444432211 37899999986521 11468
Q ss_pred cccEEEEcc
Q 018352 105 QADLVCCFQ 113 (357)
Q Consensus 105 ~FDlV~~~~ 113 (357)
+||+|.+--
T Consensus 151 s~DVVY~DP 159 (234)
T PF04445_consen 151 SFDVVYFDP 159 (234)
T ss_dssp --SEEEE--
T ss_pred CCCEEEECC
Confidence 999998876
No 294
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.92 E-value=0.29 Score=42.81 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=59.0
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHH-HHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGE-ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~-A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
+.+++=+|...-..=...++.+.++++-++.++--+++ .+.|.. .+...++........++||.++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchhhh
Confidence 45677777765422222334577788888877533221 111111 1111122222223467899999
Q ss_pred Eccchhhc--------cCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 111 CFQHLQMC--------FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 111 ~~~~lh~~--------fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
|..++.+. .....+ .+.+.++.++|||||.+++.+|=.
T Consensus 69 s~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred eechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecC
Confidence 98876442 111222 356788999999999999987654
No 295
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.77 E-value=0.14 Score=41.69 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCC
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVA 63 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS 63 (357)
+.....|||||+| .+...+....-.=.|+|.-
T Consensus 58 ~~~~FVDlGCGNG-LLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNG-LLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCch-HHHHHHHhCCCCccccccc
Confidence 3567999999999 5555555533366788874
No 296
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=91.63 E-value=0.45 Score=46.49 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=75.6
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHH-------HHHhHhcCC-CceeEEEEcCCCCCchhhhhh
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEA-------RDTWENQRK-NFIAEFFEADPCAENFETQMQ 100 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A-------~~r~~~~~~-~~~v~f~~~D~~~~~~~~~l~ 100 (357)
+.+|.-|+|==.|||+.+...+.-+. .|+|.||+-.++... +..+++.+. ..-+.+..+|....+++.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs--- 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS--- 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh---
Confidence 35789999999999988876655454 899999998888732 122332221 223567888888877753
Q ss_pred hcCCcccEEEEccc-------------------------hhhccCC----HHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 101 EKANQADLVCCFQH-------------------------LQMCFET----EERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 101 ~~~~~FDlV~~~~~-------------------------lh~~fes----~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
...||.|+|--. -||--.. ..-....|.-.++.|.-||++++..|-.
T Consensus 282 --n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 282 --NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred --cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 467999998321 1110000 1112346777789999999999987744
No 297
>PHA01634 hypothetical protein
Probab=91.56 E-value=0.51 Score=39.76 Aligned_cols=47 Identities=4% Similarity=-0.193 Sum_probs=40.9
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ 77 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~ 77 (357)
.+.+|+|||.+-|..+..++..+.+.|++++.++...+..++..+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 57899999999997777887889999999999999999888876544
No 298
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.40 E-value=0.15 Score=48.70 Aligned_cols=96 Identities=20% Similarity=0.042 Sum_probs=67.4
Q ss_pred CCCEEEEECCCCChhHH-HHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~-k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.+..|.|+-.|-|.++. .+..++.+.|+++|.++.+++..++..+.++..++...+.+|.....+ ....|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccchhe
Confidence 56899999999998887 667778999999999999999998888776544455566677655433 5677777
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcE
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGY 141 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~ 141 (357)
.... .-.+++.. -.+.++|||.|-
T Consensus 267 nLGL----lPSse~~W----~~A~k~Lk~egg 290 (351)
T KOG1227|consen 267 NLGL----LPSSEQGW----PTAIKALKPEGG 290 (351)
T ss_pred eecc----ccccccch----HHHHHHhhhcCC
Confidence 5433 22233333 334567887443
No 299
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=91.29 E-value=0.24 Score=51.62 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=61.2
Q ss_pred cCCCCCEEEEECCCCChhHHHHHHh-c-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cC
Q 018352 28 YSHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA 103 (357)
Q Consensus 28 ~~~~~~~VLDlGCG~G~~l~k~~~~-~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~ 103 (357)
|+.+...||||||..|+.+.-..+. + .+-|+|+|+-+-- - ..++.-.+.|++.......+.. ..
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------p---~~~c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------P---IPNCDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------c---CCccchhhhhhhHHHHHHHHHHHHHh
Confidence 4568889999999999776655443 3 4579999997531 0 1133334455544332221111 12
Q ss_pred CcccEEEEccc-------hhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 104 NQADLVCCFQH-------LQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 104 ~~FDlV~~~~~-------lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
-+.|+|+.-.+ .|-+|....-.-..|+-+...|..||.|+--
T Consensus 109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 34577765332 2223322233345677788899999997643
No 300
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.18 E-value=0.41 Score=48.87 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=65.7
Q ss_pred CEEEEECCCCChhHHHHHHhcCC--eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 33 VTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~--~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
..|+|+..|.||++..+...+.- +|+-+ ..+..|...-+| ++ +- +-.|.++ .|.. -+.+||+|-
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GL---IG-~yhDWCE-~fsT----YPRTYDLlH 432 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GL---IG-VYHDWCE-AFST----YPRTYDLLH 432 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----cc---ch-hccchhh-ccCC----CCcchhhee
Confidence 57999999999999888665531 22222 222222222111 10 00 1223222 2211 368999998
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHHhH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNV 160 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~~~ 160 (357)
+...+-. ..+.-....+|-++-|+|+|||.+|+- |...++.++++..
T Consensus 433 A~~lfs~-~~~rC~~~~illEmDRILRP~G~~iiR--D~~~vl~~v~~i~ 479 (506)
T PF03141_consen 433 ADGLFSL-YKDRCEMEDILLEMDRILRPGGWVIIR--DTVDVLEKVKKIA 479 (506)
T ss_pred hhhhhhh-hcccccHHHHHHHhHhhcCCCceEEEe--ccHHHHHHHHHHH
Confidence 7764433 334556778899999999999998864 5555666666543
No 301
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.09 E-value=2 Score=42.13 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=61.7
Q ss_pred CCCEEEEECCCCChhH-HHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc-CCccc
Q 018352 31 PYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD 107 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l-~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~-~~~FD 107 (357)
++.+|+=+|||.=|.+ ..+++. +.++|+.+|.+++-++.|++..... .+.-.............. ...+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCC
Confidence 4459999999974444 455554 6789999999999999998865332 111111101110011111 23699
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+-.-+ ....+..+.+++++||.+...
T Consensus 241 ~vie~~G----------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 241 VVIEAVG----------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence 9875443 122678888899999998866
No 302
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.04 E-value=2.4 Score=40.34 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=60.8
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh-hhcCCcc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l-~~~~~~F 106 (357)
+.++.+||..|||. |..+..+++....++++++.+++..+.+++.- +..+..+ ........+ ....+.+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g--------~~~~~~~-~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG--------ADEVLNS-LDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC--------CCEEEcC-CCcCHHHHHHHhcCCCc
Confidence 35678999988763 66666777765567999999999887774421 1111111 111111111 1124679
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|+|+..... ...++.+.+.|+++|.++...
T Consensus 234 D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVGT----------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCCC----------HHHHHHHHHHhhcCCEEEEEC
Confidence 998754311 135677889999999998763
No 303
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=91.01 E-value=0.43 Score=48.30 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCEEEEECCCCChhHHHHH---HhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352 32 YVTVCDLYCGAGVDVDKWE---TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~---~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD 107 (357)
...++|+|.|.|....... ......|+.||-|..|+.++....++. ......++...+....+ ++. ....||
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~-~~~g~~~v~~~~~~r~~---~pi~~~~~yD 276 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDG-SHIGEPIVRKLVFHRQR---LPIDIKNGYD 276 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcCh-hhcCchhccccchhccc---CCCCccccee
Confidence 4578889888763322111 123557999999999999988876651 01111111111111111 111 246699
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHH-hcccCCcEEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~-~~LkpGG~fi~t 145 (357)
+|+|.+.+|. +.+........++.. +..++||+++++
T Consensus 277 lvi~ah~l~~-~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 277 LVICAHKLHE-LGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eEEeeeeeec-cCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 9999999998 656555555566555 566788888877
No 304
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.65 E-value=1.6 Score=45.15 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=63.3
Q ss_pred CCCEEEEECCCCCh-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC-------------chh
Q 018352 31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-------------NFE 96 (357)
Q Consensus 31 ~~~~VLDlGCG~G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-------------~~~ 96 (357)
++.+|+=+|||.=| .+...++.-...|+++|.+++-++++++. .++|...|.... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--------GA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--------GAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--------CCeEEEeccccccccccchhhhcchhHH
Confidence 57899999999754 44455555344899999999999888763 223332222111 110
Q ss_pred h----hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeC
Q 018352 97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (357)
Q Consensus 97 ~----~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~p 147 (357)
. .+......+|+|+..-.... ......+.++..+.+||||.++....
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 01111246999987653211 11122335888899999999886643
No 305
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.34 E-value=2.7 Score=33.75 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=58.5
Q ss_pred CCCChhHHHHHH---hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchh
Q 018352 40 CGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQ 116 (357)
Q Consensus 40 CG~G~~l~k~~~---~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh 116 (357)
||.|......++ .....|+.+|.+++.++.+++.. ..++.+|..+........ -...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~--i~~a~~vv~~~--- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAG--IEKADAVVILT--- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTT--GGCESEEEEES---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcC--ccccCEEEEcc---
Confidence 344444443333 34448999999999988776552 568999998866544332 25688777643
Q ss_pred hccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352 117 MCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (357)
Q Consensus 117 ~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~ 151 (357)
.+ +.....+-...+.+.|...++....+.+.
T Consensus 71 ---~~-d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 71 ---DD-DEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp ---SS-HHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred ---CC-HHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 12 23334445555777788888888777644
No 306
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=89.84 E-value=1.3 Score=45.63 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCC----CCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEc
Q 018352 18 EFAKTALIKIYSHP----YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA 88 (357)
Q Consensus 18 nwvks~Li~~~~~~----~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~ 88 (357)
.-|...|+.+.... ...|+=+|.|.|-...+-+++ ..-++++++-++.++...+.+-- .....+++.+..
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~-~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF-ECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch-hhhcCeeEEEec
Confidence 33445555553221 346788899999666555443 33479999999999887766321 122347999999
Q ss_pred CCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 89 D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+....- +..+.|++++-. +. +|.+-+--.+.|.-+.+.|||.|+.|=.
T Consensus 429 DMR~w~a------p~eq~DI~VSEL-LG-SFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 429 DMRKWNA------PREQADIIVSEL-LG-SFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred cccccCC------chhhccchHHHh-hc-cccCccCCHHHHHHHHhhcCCCceEccc
Confidence 9987542 347899986521 22 3545455556789999999999988743
No 307
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.62 E-value=0.71 Score=46.46 Aligned_cols=55 Identities=16% Similarity=0.034 Sum_probs=42.3
Q ss_pred CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEE
Q 018352 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE 87 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~ 87 (357)
..|||||.|||-.......++...+++++.=..|.+.|++....++...++.++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 4699999999944444445577889999999999999999887766555555543
No 308
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=89.49 E-value=2.6 Score=38.07 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc-CC
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-AN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~-~~ 104 (357)
+...|+++|.-.||.+...+.. ...+|+++||+-..++-+..+ ..++.|++++.....+..+.... .+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 3578999999999888766553 235899999997665544333 12789999998887765544322 23
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.--+-.|-.+.|. .+...+-|+-...+|..|-|++..
T Consensus 143 y~kIfvilDsdHs----~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 143 YPKIFVILDSDHS----MEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred CCcEEEEecCCch----HHHHHHHHHHhhhHhhcCceEEEe
Confidence 3344456666665 355667788888999999988866
No 309
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=89.19 E-value=3.7 Score=42.44 Aligned_cols=114 Identities=12% Similarity=0.083 Sum_probs=66.9
Q ss_pred CCCEEEEECCCCChhHHHHHHh-----cCCeEEEEeCChHHHHHHHHHhHhcCCC-ceeEEEEcCCCCCchhhhhhhcCC
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-----~~~~v~GiDiS~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~l~~~~~ 104 (357)
+...|.|.+||+|+.+...... ....++|.+....+...|+....-+... .......+|....+.. . ...
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~--~--~~~ 292 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW--E--NEN 292 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc--c--ccc
Confidence 5579999999999988764331 2246999999999999988764222111 0122223443332110 0 124
Q ss_pred cccEEEEccch--hh------------------ccCC-HHHHHHHHHHHHhcccCCcEEEEEeCC
Q 018352 105 QADLVCCFQHL--QM------------------CFET-EERARRLLQNVSSLLKPGGYFLGITPD 148 (357)
Q Consensus 105 ~FDlV~~~~~l--h~------------------~fes-~~~~~~~L~~i~~~LkpGG~fi~t~pd 148 (357)
+||+|+++-.+ .+ ++.+ ...-..++..+...|++||......|+
T Consensus 293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 293 GFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred cCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 57777654311 10 0111 122356888899999999987666554
No 310
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=89.18 E-value=2.5 Score=37.44 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=55.9
Q ss_pred CCC-EEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCC--CceeEEEEcCCCCCchhhhhhhc--
Q 018352 31 PYV-TVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQEK-- 102 (357)
Q Consensus 31 ~~~-~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~--~~~v~f~~~D~~~~~~~~~l~~~-- 102 (357)
++. .|+-||||- ++..|... +..+++-+|..+ +++.-+++++.... ..+.+++.+|+.+..+...+...
T Consensus 77 ~~~~qvV~LGaGl--DTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~ 153 (183)
T PF04072_consen 77 PGARQVVNLGAGL--DTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGF 153 (183)
T ss_dssp TTESEEEEET-TT----HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT
T ss_pred CCCcEEEEcCCCC--CchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCC
Confidence 444 899999996 44443322 234566666644 34444444433211 11356799999886665555432
Q ss_pred -CCcccEEEEccchhhccCCHHHHHHHHHHHH
Q 018352 103 -ANQADLVCCFQHLQMCFETEERARRLLQNVS 133 (357)
Q Consensus 103 -~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~ 133 (357)
...--++++-.++.| + +.++...+|+.++
T Consensus 154 ~~~~ptl~i~Egvl~Y-l-~~~~~~~ll~~ia 183 (183)
T PF04072_consen 154 DPDRPTLFIAEGVLMY-L-SPEQVDALLRAIA 183 (183)
T ss_dssp -TTSEEEEEEESSGGG-S--HHHHHHHHHHH-
T ss_pred CCCCCeEEEEcchhhc-C-CHHHHHHHHHHhC
Confidence 345667888888999 6 6777888888763
No 311
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.08 E-value=0.67 Score=44.93 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=50.0
Q ss_pred EEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccc
Q 018352 35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH 114 (357)
Q Consensus 35 VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~ 114 (357)
|+||-||.|+...-+..+++.-+.++|+++.+++.-+.++.. .++.+|+.+..... -..+|+++..+-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~-----~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSD-----IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhh-----CCCcCEEEecCC
Confidence 689999999999998888887778999999888766655432 34567776643311 235899986554
Q ss_pred hh
Q 018352 115 LQ 116 (357)
Q Consensus 115 lh 116 (357)
.+
T Consensus 69 Cq 70 (315)
T TIGR00675 69 CQ 70 (315)
T ss_pred Cc
Confidence 33
No 312
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.56 E-value=2.6 Score=40.77 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=56.9
Q ss_pred CCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++.+||=.|||. |..+..+++. +..+++++|.+++-++.|++.-. . .+ .|..+.++..... ..+.+|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa-~------~v--i~~~~~~~~~~~~-~~g~~D~ 238 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA-D------KL--VNPQNDDLDHYKA-EKGYFDV 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC-c------EE--ecCCcccHHHHhc-cCCCCCE
Confidence 678999999863 3344555555 45579999999998888765311 1 11 1211112211111 1245999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+...+ + ...+..+.++|++||+++..
T Consensus 239 vid~~G------~----~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 239 SFEVSG------H----PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence 875432 1 12456677789999999876
No 313
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.32 E-value=8 Score=37.26 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcC--CeEEEEeCChHHHHHHHHHhHhcCC--CceeEEEEcCCCC
Q 018352 17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCA 92 (357)
Q Consensus 17 ~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~--~~v~GiDiS~~~l~~A~~r~~~~~~--~~~v~f~~~D~~~ 92 (357)
.++++..+... -..|+-||||- |+..+--... .+|+-+|.= +.++.=++.+++... .-...++.+|+..
T Consensus 82 D~~~~~~~~~g----~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~P-evi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 82 DDFVRAALDAG----IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDLP-EVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHhc----ccEEEEecccc--ccceeecCCCCCCeEEECCCc-HHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 34555444332 36899999985 4544432222 355555553 333333334444321 2257899999987
Q ss_pred Cchhhhhhh---cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 93 ENFETQMQE---KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 93 ~~~~~~l~~---~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.+....+.. ....--++++-..+.| | +++...++|++|...+.||-.++...+..
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~Y-L-~~~~v~~ll~~I~~~~~~gS~~~~~~~~~ 212 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMY-L-PEEAVDRLLSRIAALSAPGSRVAFDYSLP 212 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEecccccc-C-CHHHHHHHHHHHHHhCCCCceEEEecccc
Confidence 766555542 1244556788888989 6 68889999999999999999988886633
No 314
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.74 E-value=1.6 Score=42.44 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=55.0
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
..+++||.||.|+.-.-+..+++.-+.++|+++.+++.-+.++.. ..++..|+....... + ....+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~-~--~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEA-L--RKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhh-c--cccCCCEEEe
Confidence 468999999999999888888988899999999988766555542 345667765533211 0 1117999997
Q ss_pred ccchhh
Q 018352 112 FQHLQM 117 (357)
Q Consensus 112 ~~~lh~ 117 (357)
.+-.+.
T Consensus 74 GpPCQ~ 79 (328)
T COG0270 74 GPPCQD 79 (328)
T ss_pred CCCCcc
Confidence 765554
No 315
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.00 E-value=1.3 Score=41.37 Aligned_cols=59 Identities=5% Similarity=0.035 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCC-CCEEEEECCCCChhHHHHHHh---------cCCeEEEEeCChHHHHHHHHHhHh
Q 018352 18 EFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN 76 (357)
Q Consensus 18 nwvks~Li~~~~~~-~~~VLDlGCG~G~~l~k~~~~---------~~~~v~GiDiS~~~l~~A~~r~~~ 76 (357)
+|+-..+.....+. ..+|+|+|.|+|..+.-++.. ...+|+-||+|+.+.+.-++++..
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 55555554443333 379999999999877666553 235899999999998888887755
No 316
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=86.55 E-value=1 Score=42.84 Aligned_cols=55 Identities=16% Similarity=-0.008 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHH
Q 018352 14 HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68 (357)
Q Consensus 14 ~~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~ 68 (357)
..+-+.++..+-.+..-.+.+|||+|||.|-.-......+...+...|+|.+.++
T Consensus 99 ~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 99 VDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 3444555544334444578899999999996555555556578899999988774
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.39 E-value=12 Score=33.96 Aligned_cols=98 Identities=23% Similarity=0.206 Sum_probs=60.0
Q ss_pred CCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh-hhcCCccc
Q 018352 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l-~~~~~~FD 107 (357)
.++.+||..|+|. |..+..+++....++++++.+++..+.+++... . .+ .|.........+ ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~------~-~~--~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA------D-HV--IDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC------c-ee--ccCCcCCHHHHHHHhcCCCCC
Confidence 5688999999985 656666666655799999999887777644311 0 11 121111121111 11246799
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+|+.... .. ..+..+.+.|+++|.++...
T Consensus 204 ~vi~~~~------~~----~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVG------GP----ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCC------CH----HHHHHHHHhcccCCEEEEEc
Confidence 9976431 11 24566778899999998663
No 318
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=84.05 E-value=2.4 Score=36.64 Aligned_cols=109 Identities=15% Similarity=0.039 Sum_probs=49.8
Q ss_pred HcCCCCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 27 ~~~~~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
+......-|||+|=|+|+.-..+-.. +..+++.+|-.-.+ ..+.. ...-.++.+|+... +.. +.....+
T Consensus 24 ~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~-------hp~~~-P~~~~~ilGdi~~t-l~~-~~~~g~~ 93 (160)
T PF12692_consen 24 QVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALAC-------HPSST-PPEEDLILGDIRET-LPA-LARFGAG 93 (160)
T ss_dssp HTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG----GGGEEES-HHHH-HHH-HHHH-S-
T ss_pred HhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeeccc-------CCCCC-CchHheeeccHHHH-hHH-HHhcCCc
Confidence 33445578999999999888777665 66789999965221 11100 01224677776431 111 1112334
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.-++-+-++.|+--.+...+..+---|..+|.|||+++-.
T Consensus 94 a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 94 AALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 4455555555551111122333444567899999988744
No 319
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.34 E-value=20 Score=32.24 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=23.9
Q ss_pred CCEEEEECCCC-ChhHH-HHHHhcCCeEEEEeCC
Q 018352 32 YVTVCDLYCGA-GVDVD-KWETALIANYIGIDVA 63 (357)
Q Consensus 32 ~~~VLDlGCG~-G~~l~-k~~~~~~~~v~GiDiS 63 (357)
+.+||=+|||. |..+. .+...+.++++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 57899999994 54444 4445588899999976
No 320
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=81.60 E-value=4.8 Score=41.15 Aligned_cols=116 Identities=16% Similarity=0.047 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhh---hhcCCcc
Q 018352 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM---QEKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l---~~~~~~F 106 (357)
....+|-+|-|.|+....+..+ +...++++.+.++|++.|+..+.-.... +..+.-.|... +.... ...+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~--~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLD--FLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchH--HHHHHhhccccccCC
Confidence 3457888888888666555443 5579999999999999998865321110 22333333321 11111 1135678
Q ss_pred cEEEEccc---hhhc--cCCHHHHHHHHHHHHhcccCCcEEEEE--eCCc
Q 018352 107 DLVCCFQH---LQMC--FETEERARRLLQNVSSLLKPGGYFLGI--TPDS 149 (357)
Q Consensus 107 DlV~~~~~---lh~~--fes~~~~~~~L~~i~~~LkpGG~fi~t--~pd~ 149 (357)
|++...-. .|-+ -...=-++.+|..+...|.|-|.|++- ++|+
T Consensus 372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 88764210 2211 111223678999999999999999876 4444
No 321
>PRK10458 DNA cytosine methylase; Provisional
Probab=81.03 E-value=5.1 Score=41.14 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=42.5
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~ 94 (357)
..+++|+-||.||...-+..+++..+.++|+++.+.+.-+.++... .....+..|+....
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCc
Confidence 4599999999999999988888877889999988766554443211 12334556665543
No 322
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.88 E-value=9.8 Score=36.12 Aligned_cols=101 Identities=11% Similarity=0.079 Sum_probs=56.5
Q ss_pred CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcC------------C-CCCchhhh
Q 018352 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD------------P-CAENFETQ 98 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D------------~-~~~~~~~~ 98 (357)
.+|.=||||. |..+...+.....+|+++|.+++.++.++++++............+. + ...+. .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~- 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E- 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H-
Confidence 3688889995 43333333333348999999999999877654431000000000000 0 00011 0
Q ss_pred hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
.-...|+|+..- .+..+..+.+++++...++++..++
T Consensus 82 ---~~~~aDlVieav-----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 ---SLSDADFIVEAV-----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ---HhCCCCEEEEcC-----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 124578887643 4455556788999999998877654
No 323
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=80.86 E-value=14 Score=38.68 Aligned_cols=100 Identities=10% Similarity=0.000 Sum_probs=61.4
Q ss_pred CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
.+|+=+|||. |..+.+.+......|+.+|.+++.++.+++. ....+.+|+++....... .-+..|.|++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a--~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA--HLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc--CccccCEEEE
Confidence 5778888886 4455555444445899999999988877642 356799999886543221 2357887654
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.- .+.++.......+ +.+.|.-..+...-+.
T Consensus 488 ~~------~~~~~~~~iv~~~-~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 488 TI------PNGYEAGEIVASA-REKRPDIEIIARAHYD 518 (558)
T ss_pred Ec------CChHHHHHHHHHH-HHHCCCCeEEEEECCH
Confidence 32 1222222333333 4456777777665554
No 324
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.75 E-value=16 Score=38.79 Aligned_cols=103 Identities=12% Similarity=0.035 Sum_probs=67.0
Q ss_pred CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
.+|+=+|+|. |..+.+.+......|+.+|.+++.++.+++. ....+.+|+++....... .-...|+|++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a--gi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAA--GAEKAEAIVI 470 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhc--CCccCCEEEE
Confidence 5788888886 4444555555555899999999998877542 346799999886543221 2356888776
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHH
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i 152 (357)
.. .+.+........ .+.+.|...++...-|.+..
T Consensus 471 ~~------~d~~~n~~i~~~-~r~~~p~~~IiaRa~~~~~~ 504 (601)
T PRK03659 471 TC------NEPEDTMKIVEL-CQQHFPHLHILARARGRVEA 504 (601)
T ss_pred Ee------CCHHHHHHHHHH-HHHHCCCCeEEEEeCCHHHH
Confidence 33 233434344443 45577888888887776544
No 325
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.66 E-value=4.5 Score=32.92 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=53.8
Q ss_pred ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhc--CCcccEEEEccchhhccC
Q 018352 43 GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFE 120 (357)
Q Consensus 43 G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~--~~~FDlV~~~~~lh~~fe 120 (357)
|..+..+++....+++++|.++.-++.+++.-.. .+ .|....++.+.+... ...+|+|+-..+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~-------~~--~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD-------HV--IDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES-------EE--EETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc-------cc--ccccccccccccccccccccceEEEEecC------
Confidence 5556666666448999999999998888664311 12 222333343333222 247999975442
Q ss_pred CHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 121 TEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 121 s~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+ ...++...++|++||.++..
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEE
T ss_pred c----HHHHHHHHHHhccCCEEEEE
Confidence 1 23577788899999999877
No 326
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=80.13 E-value=9.1 Score=37.85 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHh---------cCCeEEEEeCChHHHHHHHHHhHhc
Q 018352 17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWENQ 77 (357)
Q Consensus 17 ~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~---------~~~~v~GiDiS~~~l~~A~~r~~~~ 77 (357)
-.|+...+-+.-.+....+++||.|+|..+.-+++. ...+|.-|++|++..+.-+++.+..
T Consensus 63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 366555443333445678999999999776655543 3568999999999988777776543
No 327
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=80.06 E-value=17 Score=38.66 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=65.7
Q ss_pred CCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 32 ~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
..+|+=+|||. |..+...+......++.+|.+++.++.+++. ....+.+|+++.+..... .-...|+|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a--gi~~A~~vv 469 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESA--GAAKAEVLI 469 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhc--CCCcCCEEE
Confidence 46899999996 4445455555445899999999998887542 346799999886553211 235788877
Q ss_pred EccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchH
Q 018352 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (357)
Q Consensus 111 ~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~ 151 (357)
+.. .+.+.-..... ..+.+.|.-..+...-|.+.
T Consensus 470 v~~------~d~~~n~~i~~-~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 470 NAI------DDPQTSLQLVE-LVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred EEe------CCHHHHHHHHH-HHHHhCCCCeEEEEECCHHH
Confidence 643 23333333333 44456677777777766544
No 328
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.65 E-value=24 Score=31.04 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=22.6
Q ss_pred EEEEECCCC-ChhHHHH-HHhcCCeEEEEeCCh
Q 018352 34 TVCDLYCGA-GVDVDKW-ETALIANYIGIDVAT 64 (357)
Q Consensus 34 ~VLDlGCG~-G~~l~k~-~~~~~~~v~GiDiS~ 64 (357)
+|+=+|||. |..+.+. ...+..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899994 6554444 455888999999875
No 329
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.65 E-value=43 Score=29.89 Aligned_cols=112 Identities=11% Similarity=-0.013 Sum_probs=62.9
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh-h---hhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~-l---~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....+|++++-+++.++.+.+..... .++.++.+|+.+..-... + ....+.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 568999998654 3344444444458999999988776654444332 157888999876432111 1 111245
Q ss_pred ccEEEEccchhh--ccCCHHH-----------HHHHHHHHHhcccCCcEEEEEe
Q 018352 106 ADLVCCFQHLQM--CFETEER-----------ARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 106 FDlV~~~~~lh~--~fes~~~-----------~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
.|.+++..+... .+...+. ...+++.+...++.+|.++.+.
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 788776553211 0111111 1234555666677788877664
No 330
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=79.32 E-value=6.6 Score=40.77 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=61.2
Q ss_pred CCCEEEEECCCCC-hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-------------Cchh
Q 018352 31 PYVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-------------ENFE 96 (357)
Q Consensus 31 ~~~~VLDlGCG~G-~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-------------~~~~ 96 (357)
++.+||=+|||.= ..+..+++.-...++++|.+++.++.++. + ..+++..|... .++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l-------Ga~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M-------GAEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c-------CCeEEeccccccccccccceeecCHHHH
Confidence 4689999999964 44455555544579999999998777765 2 22333333211 1111
Q ss_pred h----hhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 97 ~----~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
. .+.+.-..+|+|++.-.+.- ...++-+.++..+.+|||+.++=..
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEEEee
Confidence 0 01112356999977652222 1122335667788999999877443
No 331
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=79.13 E-value=12 Score=36.15 Aligned_cols=92 Identities=5% Similarity=-0.073 Sum_probs=55.4
Q ss_pred CCCCCEEEEECCCCChh-HHHHHHh--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 29 SHPYVTVCDLYCGAGVD-VDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~-l~k~~~~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
..++.+||=+|||.=|. +..+++. +..+++++|.+++-++.|++ .. ... ..+ .+. ....
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~-------~~~-~~~----~~~-----~~~g 222 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD-------ETY-LID----DIP-----EDLA 222 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC-------cee-ehh----hhh-----hccC
Confidence 35788999999975333 3454543 45689999999887777753 11 111 111 111 1124
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+-.-+-. .....+....++|++||+++..
T Consensus 223 ~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 223 VDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEEE
Confidence 89987543210 0123567778899999998765
No 332
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.01 E-value=4.4 Score=35.86 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=57.0
Q ss_pred EEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------CC-C--------ceeEEEEcCCCCCchh
Q 018352 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RK-N--------FIAEFFEADPCAENFE 96 (357)
Q Consensus 34 ~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~~-~--------~~v~f~~~D~~~~~~~ 96 (357)
+|.=||+|+ |..+..++.....+|+.+|.+++.++.++++++.. +. . .++. ...|+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl------ 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDL------ 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSG------
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCH------
Confidence 356689986 33333333334459999999999999998876541 00 0 0111 11221
Q ss_pred hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
... ...|+|+=. ..|+.+..+.+++++.+.+.|+-.|.-.+
T Consensus 74 ---~~~-~~adlViEa-----i~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 74 ---EEA-VDADLVIEA-----IPEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp ---GGG-CTESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred ---HHH-hhhheehhh-----ccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 112 267877643 36788889999999999999987665443
No 333
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=78.90 E-value=13 Score=35.53 Aligned_cols=114 Identities=19% Similarity=0.114 Sum_probs=77.6
Q ss_pred CCEEEEECCCCChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
+..|+=+|-- |+..++.+ -..++..+||++..|+.-.+-.+..+.. +++.+..|+.+ ++.+.+ .+.||+
T Consensus 153 gK~I~vvGDD---DLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~-plpe~~---~~kFDv 224 (354)
T COG1568 153 GKEIFVVGDD---DLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRN-PLPEDL---KRKFDV 224 (354)
T ss_pred CCeEEEEcCc---hhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcc-cChHHH---HhhCCe
Confidence 4568888832 44333332 4568999999999999887776665432 57888888876 333222 478999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCC---cEEEEEeCCch-HHHHHHHH
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG---GYFLGITPDSS-TIWAKYQK 158 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpG---G~fi~t~pd~~-~i~~~~~~ 158 (357)
.+.-- -++....+.++..=...||-- |+|-+|.-.++ .-|..+++
T Consensus 225 fiTDP-----peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr 273 (354)
T COG1568 225 FITDP-----PETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQR 273 (354)
T ss_pred eecCc-----hhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHH
Confidence 87654 346677888898888888876 89999976653 33444443
No 334
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=78.77 E-value=1.8 Score=43.44 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=49.3
Q ss_pred cCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCCC
Q 018352 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPC 91 (357)
Q Consensus 28 ~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~~ 91 (357)
+..++..|.|+.||-|-+.......+ ++|++-|.+++|++..+..++-+.... +++.+..|+.
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAK 309 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHH
Confidence 45688999999999998777766655 799999999999999988876554332 3666666653
No 335
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=78.59 E-value=20 Score=34.77 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=54.3
Q ss_pred CCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeC---ChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDV---ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDi---S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
.++.+||=+|||. |..+..+++....++++++. ++.-++.+++. .+.++ |....+... .. ....
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~--------Ga~~v--~~~~~~~~~-~~-~~~~ 238 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL--------GATYV--NSSKTPVAE-VK-LVGE 238 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc--------CCEEe--cCCccchhh-hh-hcCC
Confidence 4678999999874 33445555554448999987 56666655432 12222 221111111 11 1356
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+-..+ +. ..+....++|++||.++..
T Consensus 239 ~d~vid~~g------~~----~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 239 FDLIIEATG------VP----PLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCEEEECcC------CH----HHHHHHHHHccCCcEEEEE
Confidence 999875442 11 2466777899999998755
No 336
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=77.85 E-value=20 Score=34.82 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=56.7
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~ 104 (357)
+.++.+||=.|||. |..+..+++. +..+++++|.++.-++.+++. .. + .++ |....+....+.. ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga-----~-~~i--~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA-----T-HTV--NSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC-----c-eEE--cCCCcCHHHHHHHHhCCC
Confidence 35788999998863 3344555555 444699999999988887542 11 1 111 2222222221111 124
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.+|+|+-.-+ .. ..+....+.|++||+++..
T Consensus 245 g~d~vid~~g------~~----~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 245 GADVVIDAVG------RP----ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCEEEECCC------CH----HHHHHHHHHhccCCEEEEE
Confidence 6899875331 11 2355566789999998865
No 337
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.47 E-value=36 Score=31.03 Aligned_cols=79 Identities=9% Similarity=-0.097 Sum_probs=48.6
Q ss_pred CEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhc-CCc
Q 018352 33 VTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK-ANQ 105 (357)
Q Consensus 33 ~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~-~~~ 105 (357)
.+||=.|++.| ..+.+.+.....+|+++|.+.+.++........ .++.++++|+.+..-... .... .++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 36788887654 333333333445899999998887776555432 257889999976432111 1111 467
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
+|+|+.+.+.
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 8999876654
No 338
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=77.40 E-value=10 Score=36.21 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=56.7
Q ss_pred CCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++.+||-.|||. |..+..+++. +...+++++.++...+.+++. .. + .++ |.....+.. +....+.+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~-----~-~vi--~~~~~~~~~-~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA-----D-ETV--NLARDPLAA-YAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC-----C-EEE--cCCchhhhh-hhccCCCccE
Confidence 678999999874 4455556665 444799999998888765442 11 1 112 111111111 1111245999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
|+..... ...++.+.+.|+++|+++...
T Consensus 235 vld~~g~----------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASGA----------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCCC----------HHHHHHHHHHHhcCCEEEEEe
Confidence 8754321 124677788999999998653
No 339
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=76.94 E-value=31 Score=31.13 Aligned_cols=97 Identities=23% Similarity=0.248 Sum_probs=53.7
Q ss_pred CCEEEEECCCC-ChhH-HHHHHhcCCeEEEEeCC---hHHHHH---------------HHHHhHhcCCCceeEEEEcCCC
Q 018352 32 YVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA---TSGIGE---------------ARDTWENQRKNFIAEFFEADPC 91 (357)
Q Consensus 32 ~~~VLDlGCG~-G~~l-~k~~~~~~~~v~GiDiS---~~~l~~---------------A~~r~~~~~~~~~v~f~~~D~~ 91 (357)
..+|+=+|||. |..+ ..++..+..+++.+|.+ ...|.. +++++...+...++..+..++.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~ 100 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKIT 100 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCC
Confidence 47899999994 4433 44455588899999988 444432 1222222222224444445544
Q ss_pred CCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccC
Q 018352 92 AENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138 (357)
Q Consensus 92 ~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lkp 138 (357)
...+.. .-..+|+|+.. +++.+....+++.+.+..+.
T Consensus 101 ~~~~~~----~~~~~DlVi~a------~Dn~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 101 EENIDK----FFKDADIVCEA------FDNAEAKAMLVNAVLEKYKD 137 (200)
T ss_pred HhHHHH----HhcCCCEEEEC------CCCHHHHHHHHHHHHHHcCC
Confidence 333221 12468999864 23444444556666666654
No 340
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=76.85 E-value=22 Score=34.52 Aligned_cols=99 Identities=11% Similarity=0.036 Sum_probs=59.3
Q ss_pred CCCCCEEEEECC-C-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352 29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGC-G-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~ 105 (357)
..++.+||=.|+ | .|..+..+++....++++++.+++-.+.+++.+... .++..+ ....+...+.. ..+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~-~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD------EAFNYK-EEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC------EEEECC-CcccHHHHHHHHCCCC
Confidence 457889999998 3 466667777775568999999988777665333211 112111 01122221111 1246
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+...+ . ..+..+.++|++||+++..
T Consensus 229 vD~v~d~vG-------~----~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDNVG-------G----DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEECCC-------H----HHHHHHHHHhccCCEEEEE
Confidence 899875331 1 2456777899999998865
No 341
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=76.81 E-value=8.9 Score=36.11 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=42.0
Q ss_pred HHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc
Q 018352 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ 77 (357)
Q Consensus 24 Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~ 77 (357)
+|..+..++..|||-=+|+|..+... ..-..+++|+|++++.++.+.+|+...
T Consensus 215 ~i~~~s~~~diVlDpf~GsGtt~~aa-~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 215 LIRDYSFPGDIVLDPFAGSGTTGIAA-KNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHhcCCCCCEEeecCCCCChHHHHH-HHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 34446778999999999999555544 444458999999999999999998754
No 342
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=76.74 E-value=26 Score=33.19 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=56.6
Q ss_pred CCCCEEEEECCCC-ChhHHHHHHhcCCe-EEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 30 HPYVTVCDLYCGA-GVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~k~~~~~~~~-v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
.++.+||-+|+|. |..+..+++....+ +++++-+++..+.+++.-. . .++.. ...............+|
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~------~-~~~~~--~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA------T-ETVDP--SREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC------e-EEecC--CCCCHHHHHHhcCCCCc
Confidence 4678999998753 44555566654444 8999999888777743211 1 12222 11111110111235699
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+.... . ...+..+.++|+++|+++..
T Consensus 229 ~v~~~~~------~----~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATG------V----PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCC------C----hHHHHHHHHHHhcCCEEEEE
Confidence 9975431 1 13466677889999999865
No 343
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.67 E-value=31 Score=31.39 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=24.7
Q ss_pred CCCEEEEECCCC-ChhHH-HHHHhcCCeEEEEeCC
Q 018352 31 PYVTVCDLYCGA-GVDVD-KWETALIANYIGIDVA 63 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~-k~~~~~~~~v~GiDiS 63 (357)
...+|+=+|||. |..+. .+...+..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 457899999994 55444 4445588899999987
No 344
>PRK11524 putative methyltransferase; Provisional
Probab=76.05 E-value=3.4 Score=39.34 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=37.4
Q ss_pred eEEEEcCCCCCchhhhhhhcCCcccEEEEccch----hhc-----cC---CHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 83 AEFFEADPCAENFETQMQEKANQADLVCCFQHL----QMC-----FE---TEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 83 v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~l----h~~-----fe---s~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
..++++|+... ...+ ++++||+|++.--. .|. +. ..+-...++.++.++|||||.+++..
T Consensus 9 ~~i~~gD~~~~--l~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTE--LKKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHH--HHhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 45788887652 1112 35789999984321 110 00 01224578999999999999998763
No 345
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=75.47 E-value=25 Score=34.39 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=56.3
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~ 105 (357)
+.++.+||=+|+|. |..+..+++. +..+|+++|.+++-++.|++.-. . .+ .|....++...+.. ..+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga------~-~~--i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA------T-AT--VNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC------c-eE--eCCCchhHHHHHHHHhCCC
Confidence 34678899899863 3344555555 44479999999998887754211 1 11 11122222221111 1236
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+..-. .. ..+....++|++||.++..
T Consensus 260 ~d~vid~~G------~~----~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 260 VDYAFEMAG------SV----PALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCEEEECCC------Ch----HHHHHHHHHHhcCCEEEEE
Confidence 899875331 11 2355666789999998865
No 346
>PTZ00357 methyltransferase; Provisional
Probab=75.42 E-value=11 Score=40.33 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=64.9
Q ss_pred CEEEEECCCCChhHHHHHHh----c-CCeEEEEeCChHHHHHHHHHhHh-cCC-------CceeEEEEcCCCCCchhh--
Q 018352 33 VTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWEN-QRK-------NFIAEFFEADPCAENFET-- 97 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~----~-~~~v~GiDiS~~~l~~A~~r~~~-~~~-------~~~v~f~~~D~~~~~~~~-- 97 (357)
..|+=+|+|.|-.....+++ + ..++++|+-++.++.....+... ... ...++++..|+.......
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999777665554 2 23799999997655444444322 111 235899999998754311
Q ss_pred -h--hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccC----CcE
Q 018352 98 -Q--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP----GGY 141 (357)
Q Consensus 98 -~--l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lkp----GG~ 141 (357)
. ++..-+++|+|++-. |- +|.+-+---+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-LG-SFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-LG-SLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhh-hc-ccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0 011124799998621 11 354444445567777777776 675
No 347
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=75.11 E-value=22 Score=33.59 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=39.5
Q ss_pred CCCCEEEEECCCCChhHHHHHHh------cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh
Q 018352 30 HPYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~k~~~~------~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~ 96 (357)
.+...++|+|||+|..+..+... ....++.||-...-. .+-.+.+.......++=+.+|+.+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~ 88 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLS 88 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchh
Confidence 56779999999999666555443 245799999865322 1222222221112355577777776654
No 348
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=73.16 E-value=28 Score=33.28 Aligned_cols=94 Identities=12% Similarity=0.017 Sum_probs=55.9
Q ss_pred CEEEEECC--CCChhHHHHHHhcCC-eEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcccE
Q 018352 33 VTVCDLYC--GAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQADL 108 (357)
Q Consensus 33 ~~VLDlGC--G~G~~l~k~~~~~~~-~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FDl 108 (357)
.+||=.|+ |-|..+..+++.... ++++++-+++..+.+++.+... .++. .....+...+.. ..+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~--~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAIN--YKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEE--CCCCCHHHHHHHHCCCCceE
Confidence 79999886 345566666666444 7999999988777766543211 1121 112223222211 1256999
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+...+ . . .+..+.++|+++|+++..
T Consensus 228 vid~~g------~-~----~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVG------G-E----ISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCC------c-H----HHHHHHHHhccCCEEEEE
Confidence 875331 1 1 245667899999999864
No 349
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.94 E-value=16 Score=34.85 Aligned_cols=106 Identities=13% Similarity=0.127 Sum_probs=59.9
Q ss_pred CEEEEECCCC-Ch-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC--CCceeEEEEcCC----CCCchhhhhhhcCC
Q 018352 33 VTVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADP----CAENFETQMQEKAN 104 (357)
Q Consensus 33 ~~VLDlGCG~-G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~--~~~~v~f~~~D~----~~~~~~~~l~~~~~ 104 (357)
.+|-=||+|+ |. .+..++.++ ..|+..|.+++.++.+.++++..- ...+-.....+. ........+. .-.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG-VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG-DFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH-HhC
Confidence 3688889996 33 333334444 499999999999999887764320 000000000000 0000000010 124
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcc-cCCcEEEEE
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~L-kpGG~fi~t 145 (357)
..|+|+-. ..|+.+-.+.++..+.+.+ +|+.++.-.
T Consensus 84 ~~d~ViEa-----v~E~~~~K~~l~~~l~~~~~~~~~il~sn 120 (286)
T PRK07819 84 DRQLVIEA-----VVEDEAVKTEIFAELDKVVTDPDAVLASN 120 (286)
T ss_pred CCCEEEEe-----cccCHHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 57888654 3678888888999999998 676555433
No 350
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.89 E-value=26 Score=33.79 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=57.8
Q ss_pred CCCEEEEECCCCC--h-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch----hhhhhhcC
Q 018352 31 PYVTVCDLYCGAG--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQEKA 103 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~----~~~l~~~~ 103 (357)
.+..||==|.|.| + .+..+++.+. .++..|++.....+-.+..+..+ .+....+|+++..- ...+...-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 5788999999988 1 2233444444 89999999999988888777553 68889999987432 12233346
Q ss_pred CcccEEEEccch
Q 018352 104 NQADLVCCFQHL 115 (357)
Q Consensus 104 ~~FDlV~~~~~l 115 (357)
+..|+++.+.++
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 789999987753
No 351
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=72.80 E-value=32 Score=33.11 Aligned_cols=90 Identities=12% Similarity=-0.052 Sum_probs=54.5
Q ss_pred CCCCCEEEEECCCCC-hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 29 SHPYVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G-~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
..++.+||=.|||.- ..+..+++....+++++|.+++-++.|++.-.. . ..|... . ..+.+|
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~--------~-vi~~~~--~------~~~~~d 225 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA--------S-AGGAYD--T------PPEPLD 225 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc--------e-eccccc--c------Ccccce
Confidence 457889999998643 344455555445799999999887777653211 1 111111 0 123578
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+++..- ... ..+....+.|++||+++..
T Consensus 226 ~~i~~~-------~~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 226 AAILFA-------PAG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EEEECC-------CcH---HHHHHHHHhhCCCcEEEEE
Confidence 764322 111 2467777899999999765
No 352
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=71.88 E-value=14 Score=36.91 Aligned_cols=41 Identities=15% Similarity=0.024 Sum_probs=31.1
Q ss_pred CCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHH
Q 018352 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~ 72 (357)
-..|+|+|.|.|.....+.-...-.|++||-|....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 46899999999966555554555589999999777766654
No 353
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.58 E-value=45 Score=33.40 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=48.5
Q ss_pred CCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
...+|+=+|||. |..+.+.+......++.+|.+++.++.+++... .+.++.+|+.+....... .-..+|+|
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~------~~~~i~gd~~~~~~L~~~--~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP------NTLVLHGDGTDQELLEEE--GIDEADAF 301 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC------CCeEEECCCCCHHHHHhc--CCccCCEE
Confidence 457899999985 333333344445589999999998887766532 356789998765432111 23578888
Q ss_pred EEc
Q 018352 110 CCF 112 (357)
Q Consensus 110 ~~~ 112 (357)
++.
T Consensus 302 i~~ 304 (453)
T PRK09496 302 IAL 304 (453)
T ss_pred EEC
Confidence 754
No 354
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=71.52 E-value=37 Score=31.06 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=22.8
Q ss_pred CCEEEEECCCC-ChhH-HHHHHhcCCeEEEEeCC
Q 018352 32 YVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA 63 (357)
Q Consensus 32 ~~~VLDlGCG~-G~~l-~k~~~~~~~~v~GiDiS 63 (357)
..+|+=+|||. |... ..+...+.++++.+|.+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 47999999994 5444 44445588899999743
No 355
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=71.47 E-value=19 Score=34.24 Aligned_cols=85 Identities=12% Similarity=-0.027 Sum_probs=52.0
Q ss_pred CCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
++.+||=+|||. |..+..+++. +...++++|.+++.++.|... ...|.... ....+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~------------~~i~~~~~--------~~~g~Dv 203 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY------------EVLDPEKD--------PRRDYRA 203 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc------------cccChhhc--------cCCCCCE
Confidence 567899889874 4455556655 555578889988776655421 01111110 1246899
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+-.-+- ...+..+.+.|++||+++..
T Consensus 204 vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 204 IYDASGD----------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred EEECCCC----------HHHHHHHHHhhhcCcEEEEE
Confidence 8764421 12356677799999998865
No 356
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.19 E-value=42 Score=31.72 Aligned_cols=96 Identities=20% Similarity=0.111 Sum_probs=58.4
Q ss_pred CCCCCEEEEECCC-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 29 SHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 29 ~~~~~~VLDlGCG-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
..++.+||-+||| .|..+..+++....++++++.+++.++.+++.. . + .++.. ........ ..+.+|
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~-----~-~~~~~--~~~~~~~~---~~~~~d 227 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-A-----D-EVVDS--GAELDEQA---AAGGAD 227 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-C-----c-EEecc--CCcchHHh---ccCCCC
Confidence 4567899999987 566666666665558999999998887774421 1 1 11111 11111111 124689
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+|+.... +. ..+..+.+.|+++|.++...
T Consensus 228 ~vi~~~~------~~----~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 228 VILVTVV------SG----AAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEEECCC------cH----HHHHHHHHhcccCCEEEEEC
Confidence 8875421 11 24667778999999998763
No 357
>PRK13699 putative methylase; Provisional
Probab=71.06 E-value=4.7 Score=37.22 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=34.7
Q ss_pred EEEEcCCCCCchhhhhhhcCCcccEEEEccch----hhc-------cCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 84 EFFEADPCAENFETQMQEKANQADLVCCFQHL----QMC-------FETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 84 ~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~l----h~~-------fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+++++|+.+. -..+ +++++|+|+..--. ++. -...+-...++.+++|+|||||.+++.+
T Consensus 3 ~l~~gD~le~--l~~l--pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDV--MARF--PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHH--HHhC--CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4566776442 1111 46788888764211 100 0012335678999999999999887643
No 358
>PRK08324 short chain dehydrogenase; Validated
Probab=71.00 E-value=35 Score=36.62 Aligned_cols=112 Identities=14% Similarity=0.031 Sum_probs=65.6
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
++.+||=.|++.| ..+.+++.....+|+++|.++..++.+.+..... .++.++.+|+.+..-.. ......+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3578998887443 3444444444458999999998877666554332 25788999987643211 1111235
Q ss_pred cccEEEEccchhhc--c--CCHHH-----------HHHHHHHHHhcccC---CcEEEEE
Q 018352 105 QADLVCCFQHLQMC--F--ETEER-----------ARRLLQNVSSLLKP---GGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~~--f--es~~~-----------~~~~L~~i~~~Lkp---GG~fi~t 145 (357)
.+|+|+.+.+.-.. + .+.+. ...+++.+.+.++. ||.++.+
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 78999876652210 0 01111 23456666777766 6877766
No 359
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.83 E-value=33 Score=32.47 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=56.0
Q ss_pred CEEEEECCCCCh-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc------CCCc-----------eeEEEEcCCCCCc
Q 018352 33 VTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQ------RKNF-----------IAEFFEADPCAEN 94 (357)
Q Consensus 33 ~~VLDlGCG~G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~------~~~~-----------~v~f~~~D~~~~~ 94 (357)
.+|.=||+|.-| .+...+.....+|+.+|.+++.++.++++.+.. .... ++.+ .. +
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~-----d 77 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TT-----D 77 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eC-----C
Confidence 367788999633 333333333458999999999999887764321 0000 1111 11 1
Q ss_pred hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEE
Q 018352 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (357)
Q Consensus 95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~f 142 (357)
+.+ .-...|+|+..- .+..+..+.+++.+...++++-.+
T Consensus 78 ~~~----a~~~aDlVieav-----pe~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 78 LAE----AVKDADLVIEAV-----PEDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred HHH----HhcCCCEEEEec-----cCCHHHHHHHHHHHHhhCCCCCEE
Confidence 111 124578887654 345556778899999888777544
No 360
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=70.78 E-value=33 Score=33.62 Aligned_cols=77 Identities=21% Similarity=0.120 Sum_probs=46.5
Q ss_pred CCEEEEECCCC-ChhH-HHHHHhcCCeEEEEeCCh--------------H-------HHHHHHHHhHhcCCCceeEEEEc
Q 018352 32 YVTVCDLYCGA-GVDV-DKWETALIANYIGIDVAT--------------S-------GIGEARDTWENQRKNFIAEFFEA 88 (357)
Q Consensus 32 ~~~VLDlGCG~-G~~l-~k~~~~~~~~v~GiDiS~--------------~-------~l~~A~~r~~~~~~~~~v~f~~~ 88 (357)
..+||=+|||. |..+ ..++..+.++++.+|.+. . -.+.|+++++..+...+++.+..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~ 103 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ 103 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 57899999994 4433 445556888999999863 1 12234445554443445666666
Q ss_pred CCCCCchhhhhhhcCCcccEEEEc
Q 018352 89 DPCAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 89 D~~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
++........ -..+|+|+..
T Consensus 104 ~~~~~~~~~~----~~~~DlVid~ 123 (339)
T PRK07688 104 DVTAEELEEL----VTGVDLIIDA 123 (339)
T ss_pred cCCHHHHHHH----HcCCCEEEEc
Confidence 6654333221 2568998864
No 361
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=70.74 E-value=55 Score=31.19 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=54.5
Q ss_pred CCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 018352 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (357)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~ 105 (357)
.++.+||=+|+|. |..+..+++. +..+++++|.+++-++.+++.-. . .++ |..... ...+.. ....
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga-~------~~i--~~~~~~-~~~~~~~~~~~~ 231 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA-D------FVI--NSGQDD-VQEIRELTSGAG 231 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-C------EEE--cCCcch-HHHHHHHhCCCC
Confidence 4688999998763 2344455555 44349999999988877754311 0 111 211111 111111 2346
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+.... +. ..+....+.|+++|+++..
T Consensus 232 ~d~vid~~g------~~----~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 232 ADVAIECSG------NT----AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCEEEECCC------CH----HHHHHHHHHhhcCCEEEEE
Confidence 999875431 11 2345566789999999865
No 362
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=70.67 E-value=57 Score=28.55 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=66.8
Q ss_pred CCCCCEEEEECCCCChhHHHHHH--hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc-hhhhhhhcCCc
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQEKANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~--~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-~~~~l~~~~~~ 105 (357)
.....+|+-|||=+- ...+.. ....+++..|++ .|+...+. + .|+.-|..... +... -.++
T Consensus 23 ~~~~~~iaclstPsl--~~~l~~~~~~~~~~~Lle~D--------~RF~~~~~--~-~F~fyD~~~p~~~~~~---l~~~ 86 (162)
T PF10237_consen 23 ALDDTRIACLSTPSL--YEALKKESKPRIQSFLLEYD--------RRFEQFGG--D-EFVFYDYNEPEELPEE---LKGK 86 (162)
T ss_pred cCCCCEEEEEeCcHH--HHHHHhhcCCCccEEEEeec--------chHHhcCC--c-ceEECCCCChhhhhhh---cCCC
Confidence 345689999999764 223333 245589999999 45554311 2 46777765432 2111 2479
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
||+|++---+ -+++-..+..+.+.-++|+++.++.+++..
T Consensus 87 ~d~vv~DPPF----l~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 87 FDVVVIDPPF----LSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred ceEEEECCCC----CCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 9999987643 366767777788888889999999887654
No 363
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.65 E-value=47 Score=33.30 Aligned_cols=97 Identities=10% Similarity=0.073 Sum_probs=55.0
Q ss_pred EEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 34 ~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
+|+=+|||. |..+.+.+......|+++|.+++.++.+++.. .+.++.+|..+....... .-..+|.|++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~--~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREA--GAEDADLLIAV 72 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHc--CCCcCCEEEEe
Confidence 577788874 33333333344458999999998877665421 467788998764432211 13568887764
Q ss_pred cchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 113 ~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
. +.......+....+.+.|.-..+..+
T Consensus 73 ~-------~~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 73 T-------DSDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred c-------CChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3 11223333444455554555555554
No 364
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=70.56 E-value=21 Score=36.13 Aligned_cols=86 Identities=14% Similarity=0.049 Sum_probs=53.8
Q ss_pred CCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
++.+|+=+|||. |..+.+.++....+|+.+|+++.-++.|+.. + +... + ..+. -..+|+|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G----~~~~--~-----~~e~----v~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----G----YEVM--T-----MEEA----VKEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----C----CEEc--c-----HHHH----HcCCCEE
Confidence 688999999996 5445555555445899999998877766542 1 1111 1 1111 1357999
Q ss_pred EEccchhhccCCHHHHHHHHHH-HHhcccCCcEEEEE
Q 018352 110 CCFQHLQMCFETEERARRLLQN-VSSLLKPGGYFLGI 145 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~-i~~~LkpGG~fi~t 145 (357)
+..-+-. .++.. ..+.+|+||+++..
T Consensus 262 I~atG~~----------~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 262 VTTTGNK----------DIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EECCCCH----------HHHHHHHHhcCCCCcEEEEe
Confidence 8643211 23333 47799999999766
No 365
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=70.09 E-value=47 Score=31.60 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=55.6
Q ss_pred CCCCEEEEECCCC-ChhHHHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 018352 30 HPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (357)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~ 105 (357)
.++.+||-.|+|. |..+..+++... ..+++++.++...+.+++.- . ..++ +.....+...+.. ..+.
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi--~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDII--NPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEE--cCCcchHHHHHHHHcCCCC
Confidence 4678999987753 445555555533 47899988887776655321 1 0112 1112222221111 2356
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+....- ...+..+.+.|+++|+++..
T Consensus 237 ~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 237 VDCVIEAVGF----------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CcEEEEccCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 9998753211 12467777899999998855
No 366
>PRK07411 hypothetical protein; Validated
Probab=70.07 E-value=46 Score=33.25 Aligned_cols=95 Identities=17% Similarity=0.099 Sum_probs=52.9
Q ss_pred CCEEEEECCCC-ChhHH-HHHHhcCCeEEEEeCChHHH-------------------HHHHHHhHhcCCCceeEEEEcCC
Q 018352 32 YVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEADP 90 (357)
Q Consensus 32 ~~~VLDlGCG~-G~~l~-k~~~~~~~~v~GiDiS~~~l-------------------~~A~~r~~~~~~~~~v~f~~~D~ 90 (357)
..+||=+|||. |..+. .++..++++++-+|.+...+ +.|+++++..+...+++.+...+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~ 117 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRL 117 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEeccc
Confidence 57999999994 54444 44455899999999543222 23344444443334555565555
Q ss_pred CCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhccc
Q 018352 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLK 137 (357)
Q Consensus 91 ~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~Lk 137 (357)
....... .-..||+|++.. .+. ..+.++.+++...+
T Consensus 118 ~~~~~~~----~~~~~D~Vvd~~------d~~-~~r~~ln~~~~~~~ 153 (390)
T PRK07411 118 SSENALD----ILAPYDVVVDGT------DNF-PTRYLVNDACVLLN 153 (390)
T ss_pred CHHhHHH----HHhCCCEEEECC------CCH-HHHHHHHHHHHHcC
Confidence 4432211 125699998743 122 24455666655443
No 367
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=69.82 E-value=25 Score=33.41 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=58.1
Q ss_pred CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------CCCc------eeEEEEcCCCCCchhhh
Q 018352 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKNF------IAEFFEADPCAENFETQ 98 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~~~~------~v~f~~~D~~~~~~~~~ 98 (357)
.+|.=||+|. |..+...+.....+|+++|.+++.++.++++++.. +... ...-.... .+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~-- 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT---TNLE-- 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee---CCHH--
Confidence 4678889995 43443333333459999999999998877654321 0000 00000000 0110
Q ss_pred hhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 99 l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
.-...|+|+..- .++.+....+++++...++++.+++
T Consensus 80 ---~~~~aD~Vieav-----~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 80 ---ELRDADFIIEAI-----VESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred ---HhCCCCEEEEcC-----ccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 124578887643 4567777888999999999987654
No 368
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=69.09 E-value=44 Score=29.24 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=39.7
Q ss_pred EEcCCCCCchhhhhhhcCCcccEEEEccchhhc--c--------CCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 86 FEADPCAENFETQMQEKANQADLVCCFQHLQMC--F--------ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 86 ~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~--f--------es~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
...|++...-. .....+.||.|+-+|- |.. . .+.+-...+++++..+|+++|.+.+|..+.
T Consensus 58 ~~VDat~l~~~--~~~~~~~FDrIiFNFP-H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 58 HGVDATKLHKH--FRLKNQRFDRIIFNFP-HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred cCCCCCccccc--ccccCCcCCEEEEeCC-CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45566654322 1113578999987763 211 0 112345679999999999999999996653
No 369
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=68.97 E-value=35 Score=31.80 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=54.0
Q ss_pred CCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh--hcCCcc
Q 018352 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~--~~~~~F 106 (357)
++.+||=+|+|. |..+..+++. +..+++++|.++.-++.|++.-.. .++ |.... ...+. .....+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-------~~i--~~~~~--~~~~~~~~~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT-------ALA--EPEVL--AERQGGLQNGRGV 188 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc-------Eec--Cchhh--HHHHHHHhCCCCC
Confidence 678999998864 3344455555 444599999998887777553111 111 11110 11111 012468
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+|+-..+ + ...+..+.+.|+++|+++..
T Consensus 189 d~vid~~G------~----~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 189 DVALEFSG------A----TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CEEEECCC------C----hHHHHHHHHHhcCCCEEEEe
Confidence 99865331 1 12456677899999999865
No 370
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=68.79 E-value=29 Score=34.79 Aligned_cols=120 Identities=17% Similarity=0.077 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHh-------cCC-CceeEEEEc
Q 018352 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWEN-------QRK-NFIAEFFEA 88 (357)
Q Consensus 18 nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~-------~~~-~~~v~f~~~ 88 (357)
+.+.+..=+.-+.++....|+|.|-|+.....+. ++...-+|+.+....-+.|....+. .+. ...++.+++
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 3334443334456889999999999987765544 3566778888877665555443321 111 335777888
Q ss_pred CCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 89 D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+.........+ ....++|+++.+ .| +.+...+ +.++..-+++|-++|-+
T Consensus 259 sf~~~~~v~eI---~~eatvi~vNN~---~F-dp~L~lr-~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 259 SFLDPKRVTEI---QTEATVIFVNNV---AF-DPELKLR-SKEILQKCKDGTRIISS 307 (419)
T ss_pred ccCCHHHHHHH---hhcceEEEEecc---cC-CHHHHHh-hHHHHhhCCCcceEecc
Confidence 87765543333 246888877763 45 4444444 44888999999888866
No 371
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.57 E-value=38 Score=32.01 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=55.1
Q ss_pred EEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------CCC---------ceeEEEEcCCCCCchh
Q 018352 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAENFE 96 (357)
Q Consensus 34 ~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~~~---------~~v~f~~~D~~~~~~~ 96 (357)
+|.=||+|. |..+...+.....+|+.+|.+++.++.+.++.... +.. .++. ...| +.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~-----~~ 76 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLD-----LK 76 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCc-----HH
Confidence 577789985 33333333333348999999999999887654321 000 0011 1111 10
Q ss_pred hhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEE
Q 018352 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (357)
Q Consensus 97 ~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~ 144 (357)
+ .-...|+|+..- .++.+..+.++..+.+.++++.++..
T Consensus 77 ~----~~~~aD~Vi~av-----pe~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 77 A----AVADADLVIEAV-----PEKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred H----hhcCCCEEEEec-----cCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 0 124578887543 34445566788889899988776543
No 372
>PRK09242 tropinone reductase; Provisional
Probab=68.52 E-value=93 Score=28.21 Aligned_cols=85 Identities=11% Similarity=0.003 Sum_probs=51.6
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
.+.++|=.|++.| ..+.+.+.....+|+.++.+.+.++...+.........++.++.+|+.+..-.. ......+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3568999998654 333333333445899999998887766655543211236788899987643211 1111235
Q ss_pred cccEEEEccch
Q 018352 105 QADLVCCFQHL 115 (357)
Q Consensus 105 ~FDlV~~~~~l 115 (357)
..|+|+...+.
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 78998776543
No 373
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=67.93 E-value=24 Score=32.45 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=48.0
Q ss_pred CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
++++=+|||. |..+.+.+......++.+|.+++.+++.... ......+++|.++...-... .-..+|++++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~a--gi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEA--GIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhc--CCCcCCEEEE
Confidence 3677889996 5555555555556999999999887763331 11567899999886542222 2367999876
Q ss_pred c
Q 018352 112 F 112 (357)
Q Consensus 112 ~ 112 (357)
.
T Consensus 73 ~ 73 (225)
T COG0569 73 A 73 (225)
T ss_pred e
Confidence 3
No 374
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=67.73 E-value=39 Score=31.03 Aligned_cols=93 Identities=17% Similarity=0.091 Sum_probs=55.2
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHhcCCe-EEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~-v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
..++.+||=.|||. |..+..+++....+ +++++.+++.++.+++.-... .+ ... .. .. . ....+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~----~~--~~~--~~-~~---~--~~~~~ 160 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD----PV--AAD--TA-DE---I--GGRGA 160 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc----cc--ccc--ch-hh---h--cCCCC
Confidence 34678899998864 44555666654445 999999998887665531000 00 100 00 00 0 23568
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+|+.... . ...+....+.|+++|.++..
T Consensus 161 d~vl~~~~------~----~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 161 DVVIEASG------S----PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CEEEEccC------C----hHHHHHHHHHhcCCcEEEEE
Confidence 99875321 1 12456677889999999865
No 375
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=67.67 E-value=53 Score=31.14 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=57.3
Q ss_pred CCCCCEEEEECC--CCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGC--G~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~ 105 (357)
+.++.+||=.|. |-|..+..+++....++++++-+++-.+.+++ +.. + .++..+-. ..+...+.. ..+.
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa-----~-~vi~~~~~-~~~~~~~~~~~~~g 207 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGF-----D-VAFNYKTV-KSLEETLKKASPDG 207 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC-----C-EEEecccc-ccHHHHHHHhCCCC
Confidence 457889998885 34556667777655689999999887777643 211 1 11111110 111111111 1246
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+...+ . ..+....++|++||+++..
T Consensus 208 vdvv~d~~G-------~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 208 YDCYFDNVG-------G----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred eEEEEECCC-------H----HHHHHHHHHhCcCcEEEEe
Confidence 899875331 1 1246677899999999865
No 376
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=67.61 E-value=9.1 Score=43.44 Aligned_cols=96 Identities=14% Similarity=-0.022 Sum_probs=56.5
Q ss_pred CCEEEEECCCCChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
...+||+|.|.- .+-+... ....|+.+|+-+.+ ...........|+++|-....++ ....+|.++
T Consensus 823 ~~~~lDLGTGPE--~RiLsliP~~~pvtmvD~RP~a-------e~m~~w~t~T~y~~~DYl~~~~~-----~~~~~D~vt 888 (1289)
T PF06016_consen 823 PDHWLDLGTGPE--CRILSLIPPDTPVTMVDTRPFA-------EPMNCWNTQTQYIQADYLSDAWW-----NGTPFDAVT 888 (1289)
T ss_dssp C-CEEEET--TT---CHHHCS-TTSEEEEEESS--S-------SSCCCCSTTEEEEES-TTSCCGG-----CC---SEEE
T ss_pred cceEEEccCCcc--ceeeeccCCCCceEEEecCCcc-------cccchhhhcceeeeeccccceeE-----ecCCCCEEE
Confidence 578999998865 2222222 44589999997643 11112234578999999887775 357899999
Q ss_pred Eccchhhcc-CCHHHHHHHHHHHHhcccCCcE
Q 018352 111 CFQHLQMCF-ETEERARRLLQNVSSLLKPGGY 141 (357)
Q Consensus 111 ~~~~lh~~f-es~~~~~~~L~~i~~~LkpGG~ 141 (357)
|.++|.-++ ...-...+.++++.+.++..|.
T Consensus 889 ailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 889 AILSLGAAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp ECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred EEeeehhhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 999887643 1223467788888888887774
No 377
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.49 E-value=28 Score=28.93 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=57.0
Q ss_pred CEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
.+|.++|-|.=.+..+.+......++++||.+. +.+ ..+.|+.-|+++..+.- -...|+|.+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-----~g~~~v~DDitnP~~~i-----Y~~A~lIYS- 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-----EGLRFVVDDITNPNISI-----YEGADLIYS- 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-----ccceEEEccCCCccHHH-----hhCccceee-
Confidence 499999999766666666555469999999975 111 15788999999876521 244677653
Q ss_pred cchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 113 ~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.....+....+-.+++.++- -+++.
T Consensus 77 ------iRpppEl~~~ildva~aVga--~l~I~ 101 (129)
T COG1255 77 ------IRPPPELQSAILDVAKAVGA--PLYIK 101 (129)
T ss_pred ------cCCCHHHHHHHHHHHHhhCC--CEEEE
Confidence 33445566666667776654 34444
No 378
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=67.44 E-value=46 Score=31.66 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=58.8
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCCc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~~ 105 (357)
+.++.+||-.|+|. |..+..+++....+++++.-+++..+.+++.. .. +++ |.....+...+.. ....
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g-~~------~v~--~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG-AD------DTI--NVGDEDVAARLRELTDGEG 227 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC-CC------EEe--cCcccCHHHHHHHHhCCCC
Confidence 45788999998763 55666666665568999988888777664432 10 111 2222222222211 2346
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+.... . ...+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g------~----~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG------N----PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC------C----HHHHHHHHHHHhcCCEEEEE
Confidence 999875431 1 12367778899999999865
No 379
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=67.25 E-value=12 Score=39.95 Aligned_cols=116 Identities=13% Similarity=0.258 Sum_probs=63.1
Q ss_pred CCCEEEEECCCCChhHH-HHHHh-------c-----CCeEEEEeC---ChHHHHHHHHHhHh----------------cC
Q 018352 31 PYVTVCDLYCGAGVDVD-KWETA-------L-----IANYIGIDV---ATSGIGEARDTWEN----------------QR 78 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~-k~~~~-------~-----~~~v~GiDi---S~~~l~~A~~r~~~----------------~~ 78 (357)
..-+|||+|=|+|-... .|... + .-++++++. +.+-+..+.+.+.. .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999996332 22111 1 237999995 34444444322110 00
Q ss_pred --------CCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCH----HHHHHHHHHHHhcccCCcEEEEEe
Q 018352 79 --------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE----ERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 79 --------~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~----~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
.....+...+|+.. .+..-...||+|..-. |... -=-..+++.++++++|||.|. |.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~-----~~~~~~~~~d~~~lD~-----FsP~~np~~W~~~~~~~l~~~~~~~~~~~-t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANE-----LLPQLDARADAWFLDG-----FAPAKNPDMWSPNLFNALARLARPGATLA-TF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHH-----HHHhccccccEEEeCC-----CCCccChhhccHHHHHHHHHHhCCCCEEE-Ee
Confidence 01134455566533 1221235699997643 2111 113568999999999999887 33
Q ss_pred CCchHHHHHHH
Q 018352 147 PDSSTIWAKYQ 157 (357)
Q Consensus 147 pd~~~i~~~~~ 157 (357)
..+..+.+.+.
T Consensus 206 t~a~~vr~~l~ 216 (662)
T PRK01747 206 TSAGFVRRGLQ 216 (662)
T ss_pred ehHHHHHHHHH
Confidence 34444444443
No 380
>PLN02740 Alcohol dehydrogenase-like
Probab=67.09 E-value=45 Score=32.74 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~ 105 (357)
+.++.+||=+|||. |..+..+++. +..+|+++|.+++-++.|++. .. . .++..+-...++...+.. ..+.
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga-----~-~~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI-----T-DFINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC-----c-EEEecccccchHHHHHHHHhCCC
Confidence 35788999999864 3344455555 444799999999988887542 11 1 122211111112221111 1236
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t 145 (357)
+|+|+-.-+ .. ..+....+.+++| |+++..
T Consensus 269 ~dvvid~~G------~~----~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 269 VDYSFECAG------NV----EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCEEEECCC------Ch----HHHHHHHHhhhcCCCEEEEE
Confidence 999876442 11 2355566688886 887654
No 381
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=66.91 E-value=19 Score=33.87 Aligned_cols=107 Identities=12% Similarity=0.026 Sum_probs=57.3
Q ss_pred CCEEEEECCCCChhHHHHHH---h---cCCeEEEEeC--------------------------ChHHHHHHHHHhHhcCC
Q 018352 32 YVTVCDLYCGAGVDVDKWET---A---LIANYIGIDV--------------------------ATSGIGEARDTWENQRK 79 (357)
Q Consensus 32 ~~~VLDlGCG~G~~l~k~~~---~---~~~~v~GiDi--------------------------S~~~l~~A~~r~~~~~~ 79 (357)
...|+|+||=.|+.+..+.. . ...++++.|- ....++..++++...+.
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 46899999999986654322 1 2357888883 11234444444333221
Q ss_pred -CceeEEEEcCCCCCchhhhhhh-cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 80 -NFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 80 -~~~v~f~~~D~~~~~~~~~l~~-~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
..++.|+.+.... .++. +..++-++.+- ..-.+.....|+.++..|.|||++++.-.+.
T Consensus 155 ~~~~v~~vkG~F~d-----TLp~~p~~~IAll~lD------~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 LDDNVRFVKGWFPD-----TLPDAPIERIALLHLD------CDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp SSTTEEEEES-HHH-----HCCC-TT--EEEEEE---------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CcccEEEECCcchh-----hhccCCCccEEEEEEe------ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 2368888887532 1111 12233222211 1224567889999999999999999886554
No 382
>PRK07576 short chain dehydrogenase; Provisional
Probab=66.86 E-value=91 Score=28.64 Aligned_cols=81 Identities=10% Similarity=-0.073 Sum_probs=47.4
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~ 104 (357)
++.+||=.|.+.| ..+.+.+.....+|+++|.+++.++...+...... .++.++.+|+.+..-... .....+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3568888886443 33333333344589999999887766554444321 246788999876431111 111235
Q ss_pred cccEEEEcc
Q 018352 105 QADLVCCFQ 113 (357)
Q Consensus 105 ~FDlV~~~~ 113 (357)
..|++++..
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 689988654
No 383
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.44 E-value=69 Score=30.27 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=56.4
Q ss_pred CEEEEECCCCCh-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------CCC---------ceeEEEEcCCCCCch
Q 018352 33 VTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAENF 95 (357)
Q Consensus 33 ~~VLDlGCG~G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~~~---------~~v~f~~~D~~~~~~ 95 (357)
.+|.=||+|.-| .+...+......|+.+|.+++.++.+.++.... ... .++.+ ..| +
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~-----~ 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATD-----L 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCC-----H
Confidence 467888999633 333333333348999999999998876544321 000 00111 111 1
Q ss_pred hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
. .-...|+|+..- .+..+..+.+++.+...++++.+++
T Consensus 79 ~-----~~~~aD~Vieav-----pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 79 E-----DLADCDLVIEAA-----TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred H-----HhcCCCEEEEcC-----cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 124678887643 3444556778899999999987665
No 384
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=66.21 E-value=59 Score=31.04 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=59.0
Q ss_pred CCCCCEEEEECC--CCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGC--G~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~ 105 (357)
+.++.+||=.|+ |-|..+..+++....++++++.+++..+.+++.+... .++..+ ....+...+.. ..+.
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~-~~~~~~~~i~~~~~~g 221 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD------DAFNYK-EEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc------eeEEcC-CcccHHHHHHHhCCCC
Confidence 457889999887 3455666677765558999999988877776533211 112111 01122221111 1246
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+-..+ . ..+..+.++|+++|.++..
T Consensus 222 vd~v~d~~g-------~----~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 222 IDIYFDNVG-------G----KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred cEEEEECCC-------H----HHHHHHHHHhccCcEEEEe
Confidence 898865331 1 2366778899999999855
No 385
>PRK06701 short chain dehydrogenase; Provisional
Probab=66.19 E-value=1.1e+02 Score=28.79 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=59.8
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChH-HHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCC
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATS-GIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~-~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~ 104 (357)
+.+||=.|++.| ..+.+.+.....+|+.++.+.. .++......+.. ..++.++.+|+.+...... .....+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 568999997665 2233333333458888888753 333333333322 2267889999877442211 111225
Q ss_pred cccEEEEccchhh---cc--CCHHH-----------HHHHHHHHHhcccCCcEEEEE
Q 018352 105 QADLVCCFQHLQM---CF--ETEER-----------ARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~---~f--es~~~-----------~~~~L~~i~~~LkpGG~fi~t 145 (357)
..|+|+...+... .+ .+.++ ...+++.+...++++|.++.+
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 6898876543211 01 11111 234555666667777887766
No 386
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.17 E-value=99 Score=27.65 Aligned_cols=81 Identities=12% Similarity=-0.078 Sum_probs=49.8
Q ss_pred CCEEEEECCCC--ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCCc
Q 018352 32 YVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~--G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~~ 105 (357)
+.+||=.|+.. |..+.+.+.....+|++++-++..++........ ..++.++.+|+.+..-... .....+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 46888888754 3344444444445799999998877665555432 1257889999877442211 1112356
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
+|+|+...+.
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 8999876643
No 387
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=65.89 E-value=56 Score=30.74 Aligned_cols=97 Identities=13% Similarity=-0.000 Sum_probs=58.4
Q ss_pred CCCCCEEEEECC--CCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCc
Q 018352 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGC--G~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~ 105 (357)
..++.+||=.|. |.|..+..+++....++++++-+++-.+.+++ +.. + .++ |....++...+.. ..+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga-----~-~vi--~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGF-----D-AVF--NYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC-----C-EEE--eCCCccHHHHHHHHCCCC
Confidence 357889998884 34556666777655589999999887777755 211 1 112 2222233222211 1256
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+...+ . ..+....++|+++|+++..
T Consensus 212 vd~vld~~g-------~----~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-------G----EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-------H----HHHHHHHHhhccCCEEEEE
Confidence 898875331 1 2357778899999999765
No 388
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.60 E-value=43 Score=33.16 Aligned_cols=33 Identities=15% Similarity=-0.032 Sum_probs=24.4
Q ss_pred CCCEEEEECCCC-ChhH-HHHHHhcCCeEEEEeCC
Q 018352 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA 63 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l-~k~~~~~~~~v~GiDiS 63 (357)
...+||=+|||. |..+ ..++..+.++++.+|-+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 457899999984 5444 44455688899999987
No 389
>PRK12939 short chain dehydrogenase; Provisional
Probab=65.20 E-value=88 Score=27.98 Aligned_cols=81 Identities=11% Similarity=-0.144 Sum_probs=48.0
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....++++++-+++.++...+..+.. ..++.++.+|+.+..-... ....-+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA--GGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 567887776443 3333333334458999999888777665555432 2267889999976432111 1111257
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
.|+|+...+
T Consensus 85 id~vi~~ag 93 (250)
T PRK12939 85 LDGLVNNAG 93 (250)
T ss_pred CCEEEECCC
Confidence 899876554
No 390
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=65.11 E-value=72 Score=30.00 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=49.7
Q ss_pred EEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 34 ~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
+|.=||+|. |+.+...+.....+|+++|.+++.++.+.++-. +. ....... .-...|+|+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~-------~~-----~~~~~~~-----~~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL-------VD-----EASTDLS-----LLKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-------cc-----cccCCHh-----HhcCCCEEEEc
Confidence 566789885 443333333333489999999988877754310 10 0111110 12457998764
Q ss_pred cchhhccCCHHHHHHHHHHHHhcccCCcEE
Q 018352 113 QHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (357)
Q Consensus 113 ~~lh~~fes~~~~~~~L~~i~~~LkpGG~f 142 (357)
- ......++++++...++++-.+
T Consensus 65 v-------p~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 65 L-------PIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred C-------CHHHHHHHHHHHHHhCCCCcEE
Confidence 4 2344566788888888877544
No 391
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=64.63 E-value=50 Score=28.36 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=55.7
Q ss_pred EEEEECCCCCh--hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 34 TVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 34 ~VLDlGCG~G~--~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
+|-=||+|.-+ .+..+.+++. .+++.|.+++..+...+.- ...++- ..+ .-...|+|++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g----------~~~~~s----~~e----~~~~~dvvi~ 63 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAG----------AEVADS----PAE----AAEQADVVIL 63 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTT----------EEEESS----HHH----HHHHBSEEEE
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhh----------hhhhhh----hhh----HhhcccceEe
Confidence 56668888632 3344444455 8999999987766554331 122221 111 1134698876
Q ss_pred ccchhhccCCHHHHHHHHHH--HHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352 112 FQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDSSTIWAKYQK 158 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~--i~~~LkpGG~fi~t~pd~~~i~~~~~~ 158 (357)
. ..+.+..+.++.. +...|++|..++-++-.+.....++.+
T Consensus 64 ~------v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~ 106 (163)
T PF03446_consen 64 C------VPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE 106 (163)
T ss_dssp -------SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH
T ss_pred e------cccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh
Confidence 3 3456778888888 999999999888664444443444443
No 392
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=64.47 E-value=11 Score=37.73 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=46.7
Q ss_pred ceeEEEEcCCCCCchhhhhh-hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 81 FIAEFFEADPCAENFETQMQ-EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 81 ~~v~f~~~D~~~~~~~~~l~-~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
.+++++++++.+ .+. .+++++|.++....+-| + +.+...+.++.+.+.++|||+++.-+
T Consensus 275 drv~i~t~si~~-----~L~~~~~~s~~~~vL~D~~Dw-m-~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEE-----VLRRLPPGSFDRFVLSDHMDW-M-DPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHH-----HHHhCCCCCeeEEEecchhhh-C-CHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 467777776543 121 14689999999999999 5 56889999999999999999999773
No 393
>PRK08328 hypothetical protein; Provisional
Probab=64.40 E-value=62 Score=29.74 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=23.6
Q ss_pred CCEEEEECCCC-ChhH-HHHHHhcCCeEEEEeCC
Q 018352 32 YVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA 63 (357)
Q Consensus 32 ~~~VLDlGCG~-G~~l-~k~~~~~~~~v~GiDiS 63 (357)
+.+||=+|||. |..+ ..++..+.++++.+|.+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 57899999994 5444 44455688999999954
No 394
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=64.20 E-value=75 Score=29.38 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=24.0
Q ss_pred CCEEEEECCC-CChhH-HHHHHhcCCeEEEEeCCh
Q 018352 32 YVTVCDLYCG-AGVDV-DKWETALIANYIGIDVAT 64 (357)
Q Consensus 32 ~~~VLDlGCG-~G~~l-~k~~~~~~~~v~GiDiS~ 64 (357)
..+||=+||| .|..+ ..++..+.++++-+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999998 45544 445556889999999653
No 395
>PRK07109 short chain dehydrogenase; Provisional
Probab=63.96 E-value=96 Score=29.94 Aligned_cols=81 Identities=12% Similarity=-0.079 Sum_probs=50.2
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....+|+.++-+++.++...+..+..+ .++.++.+|+.+..-... ....-+.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 467888887655 23333333344589999999888877666555432 257788999877432111 1112357
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
.|+++.+.+
T Consensus 86 iD~lInnAg 94 (334)
T PRK07109 86 IDTWVNNAM 94 (334)
T ss_pred CCEEEECCC
Confidence 899887654
No 396
>PRK08223 hypothetical protein; Validated
Probab=63.88 E-value=39 Score=32.47 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=45.4
Q ss_pred CCCEEEEECCCC-Chh-HHHHHHhcCCeEEEEeCChHHH-------------------HHHHHHhHhcCCCceeEEEEcC
Q 018352 31 PYVTVCDLYCGA-GVD-VDKWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~-l~k~~~~~~~~v~GiDiS~~~l-------------------~~A~~r~~~~~~~~~v~f~~~D 89 (357)
...+||=+|||- |.. +..++.++.++++.+|.+...+ +.|+++.++.+...+++.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 357999999994 554 4555566999999999643222 2234444443333345555555
Q ss_pred CCCCchhhhhhhcCCcccEEEE
Q 018352 90 PCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 90 ~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
+......+. -..+|+|+.
T Consensus 106 l~~~n~~~l----l~~~DlVvD 123 (287)
T PRK08223 106 IGKENADAF----LDGVDVYVD 123 (287)
T ss_pred cCccCHHHH----HhCCCEEEE
Confidence 544433222 246999874
No 397
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=63.87 E-value=58 Score=27.12 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=21.0
Q ss_pred EEEEECCC-CChhHH-HHHHhcCCeEEEEeCC
Q 018352 34 TVCDLYCG-AGVDVD-KWETALIANYIGIDVA 63 (357)
Q Consensus 34 ~VLDlGCG-~G~~l~-k~~~~~~~~v~GiDiS 63 (357)
+||=+||| .|..+. .+...+.++++.+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 47788998 454444 4445588899999965
No 398
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=63.40 E-value=64 Score=29.99 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=23.5
Q ss_pred CCCEEEEECCC-CChhHH-HHHHhcCCeEEEEeCC
Q 018352 31 PYVTVCDLYCG-AGVDVD-KWETALIANYIGIDVA 63 (357)
Q Consensus 31 ~~~~VLDlGCG-~G~~l~-k~~~~~~~~v~GiDiS 63 (357)
...+||=+||| .|..+. .++..+.++++-+|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35799999998 454444 4445588899998854
No 399
>PRK07063 short chain dehydrogenase; Provisional
Probab=63.04 E-value=74 Score=28.92 Aligned_cols=83 Identities=10% Similarity=-0.110 Sum_probs=52.0
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....+|+.+|.+++.++...+.+.......++.++.+|+.+..-.. ......+.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 86 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGP 86 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 568998898765 233333333445899999999888877766654212236788999997743211 11112357
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
.|+++.+.+
T Consensus 87 id~li~~ag 95 (260)
T PRK07063 87 LDVLVNNAG 95 (260)
T ss_pred CcEEEECCC
Confidence 899887654
No 400
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.95 E-value=26 Score=33.04 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=55.2
Q ss_pred EEEEECCCC-Ch-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------CC-C--------ceeEEEEcCCCCCch
Q 018352 34 TVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RK-N--------FIAEFFEADPCAENF 95 (357)
Q Consensus 34 ~VLDlGCG~-G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~~-~--------~~v~f~~~D~~~~~~ 95 (357)
+|.=||+|. |+ .+..++..+ .+|+++|++++.++.++++++.. +. . .++. ...| .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~-~~~~-----~ 77 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT-GTTD-----L 77 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCC-----H
Confidence 577789985 33 333444444 48999999999998776544321 10 0 0111 1111 1
Q ss_pred hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEE
Q 018352 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (357)
Q Consensus 96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~f 142 (357)
. .-...|+|+..- .++.+..+.+++.+.+.++++..+
T Consensus 78 ~-----~~~~aDlVi~av-----~e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 78 D-----DLKDADLVIEAA-----TENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred H-----HhccCCeeeecc-----cccHHHHHHHHHHHHhhCCCCcEE
Confidence 0 124578886532 344555678999999999998766
No 401
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=62.83 E-value=18 Score=37.14 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=47.2
Q ss_pred CCCEEEEECCCC-ChhHHHHHH-hcCCeEEEEeCChHHHHH-------------------HHHHhHhcCCCceeEEEEcC
Q 018352 31 PYVTVCDLYCGA-GVDVDKWET-ALIANYIGIDVATSGIGE-------------------ARDTWENQRKNFIAEFFEAD 89 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k~~~-~~~~~v~GiDiS~~~l~~-------------------A~~r~~~~~~~~~v~f~~~D 89 (357)
.+.+||=+|||. |..+.|.+. .++.++.-||.+---|.. |.+..+..+...++..++++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 468999999984 666666554 488888888864332221 22222222233467888999
Q ss_pred CCCCchhhhhhhcCCcccEEE
Q 018352 90 PCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 90 ~~~~~~~~~l~~~~~~FDlV~ 110 (357)
+.+..+... ..++||+|.
T Consensus 91 I~e~~fnv~---ff~qfdiV~ 108 (603)
T KOG2013|consen 91 IKEPKFNVE---FFRQFDIVL 108 (603)
T ss_pred ccCcchHHH---HHHHHHHHH
Confidence 887644221 136799874
No 402
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.76 E-value=42 Score=30.15 Aligned_cols=81 Identities=14% Similarity=-0.016 Sum_probs=49.5
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.++|=.|++.| ..+.+.+.....+++++|.++..++.+.+.+... ..++.++++|+.+..-.. ......+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 568898887544 3333333334458999999988777666655443 225778899987643211 11111256
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
+|+|+...+
T Consensus 83 id~vi~~ag 91 (253)
T PRK08217 83 LNGLINNAG 91 (253)
T ss_pred CCEEEECCC
Confidence 899887654
No 403
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.30 E-value=75 Score=30.46 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=56.4
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~ 104 (357)
..++.+||=.|||. |..+..+++. +...++++|.+++.++.+++. .. . .++ |.....+...+.. ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~-----~-~~v--~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA-----T-DIV--DYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC-----c-eEe--cCCCCCHHHHHHHHhCCC
Confidence 34678999998763 3344445554 455799999998887776542 11 1 111 1112222211111 234
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.+|+|+.... . ...+..+.++|+++|+++..
T Consensus 235 ~~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGG------G----QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCC------C----HHHHHHHHHHhhcCCEEEEe
Confidence 6999875321 1 13467778889999998854
No 404
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=62.27 E-value=53 Score=32.17 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=48.0
Q ss_pred CCEEEEECCCC-ChhH-HHHHHhcCCeEEEEeCChH---------------------HHHHHHHHhHhcCCCceeEEEEc
Q 018352 32 YVTVCDLYCGA-GVDV-DKWETALIANYIGIDVATS---------------------GIGEARDTWENQRKNFIAEFFEA 88 (357)
Q Consensus 32 ~~~VLDlGCG~-G~~l-~k~~~~~~~~v~GiDiS~~---------------------~l~~A~~r~~~~~~~~~v~f~~~ 88 (357)
..+||=+|||. |..+ ..++..+.++++.+|.+.. =.+.|+++.+..+...+++.+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~ 103 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVT 103 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEec
Confidence 57899999994 4433 4455568889999998741 12334455555444446666777
Q ss_pred CCCCCchhhhhhhcCCcccEEEEcc
Q 018352 89 DPCAENFETQMQEKANQADLVCCFQ 113 (357)
Q Consensus 89 D~~~~~~~~~l~~~~~~FDlV~~~~ 113 (357)
|+....+... -..+|+|+...
T Consensus 104 ~~~~~~~~~~----~~~~DlVid~~ 124 (338)
T PRK12475 104 DVTVEELEEL----VKEVDLIIDAT 124 (338)
T ss_pred cCCHHHHHHH----hcCCCEEEEcC
Confidence 7654333221 25699988643
No 405
>PLN02827 Alcohol dehydrogenase-like
Probab=61.86 E-value=72 Score=31.36 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC--Cchhhhhhh-cC
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA 103 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~--~~~~~~l~~-~~ 103 (357)
+.++.+||=.|||. |..+..+++. +...++++|.+++-++.|++. +. . .++ |... .+....+.. ..
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga--~-~~i--~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GV--T-DFI--NPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC--c-EEE--cccccchHHHHHHHHHhC
Confidence 35788999998864 3334445554 545699999999877776442 11 1 111 2111 122121111 12
Q ss_pred CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (357)
Q Consensus 104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t 145 (357)
+.+|+|+-.-+ .. ..+....+.|++| |+++..
T Consensus 262 ~g~d~vid~~G------~~----~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSFECVG------DT----GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEEECCC------Ch----HHHHHHHHhhccCCCEEEEE
Confidence 36899875432 11 1355566788998 998754
No 406
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.84 E-value=28 Score=33.88 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=59.4
Q ss_pred CEEEEECCCC-Ch-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCC-CCCchhhhhhhcCCcccE
Q 018352 33 VTVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADP-CAENFETQMQEKANQADL 108 (357)
Q Consensus 33 ~~VLDlGCG~-G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~-~~~~~~~~l~~~~~~FDl 108 (357)
.+|-=||+|+ |. .+..++.++ .+|+..|++++.++.++.+.+..-... ......... ....+...+...-...|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 4688889995 32 333344444 499999999999988776554210000 000000000 000000011111245788
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+-. ..|+.+-.+.+++.+.+.++|+- ++.+
T Consensus 87 ViEa-----vpE~l~vK~~lf~~l~~~~~~~a-IlaS 117 (321)
T PRK07066 87 IQES-----APEREALKLELHERISRAAKPDA-IIAS 117 (321)
T ss_pred EEEC-----CcCCHHHHHHHHHHHHHhCCCCe-EEEE
Confidence 7654 36778888899999999999986 4444
No 407
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=61.81 E-value=18 Score=35.27 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=49.1
Q ss_pred EEEECCCCChhHHHHHH-h--cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcccEEE
Q 018352 35 VCDLYCGAGVDVDKWET-A--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQADLVC 110 (357)
Q Consensus 35 VLDlGCG~G~~l~k~~~-~--~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FDlV~ 110 (357)
=+|||.|.- ...|+. + ..-..+++|+.+..+..|+....+++....+..++......-+.+.+.. ++..||.+.
T Consensus 106 GiDIgtgas--ci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419)
T KOG2912|consen 106 GIDIGTGAS--CIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419)
T ss_pred eeeccCchh--hhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEe
Confidence 378887664 344433 2 2347889999999999999998887666566666664432222222211 245688888
Q ss_pred Eccc
Q 018352 111 CFQH 114 (357)
Q Consensus 111 ~~~~ 114 (357)
|+-.
T Consensus 184 cNPP 187 (419)
T KOG2912|consen 184 CNPP 187 (419)
T ss_pred cCCc
Confidence 8653
No 408
>PRK10083 putative oxidoreductase; Provisional
Probab=61.78 E-value=80 Score=29.94 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=55.4
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHH-h-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~-~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~ 105 (357)
..++.+||=.|||. |..+..+++ . +...++++|.+++..+.+++.-.. .+ .|.....+...+......
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-------~~--i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-------WV--INNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-------EE--ecCccccHHHHHhcCCCC
Confidence 34678999999763 233344555 2 656799999999888777543110 11 111122232323212223
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+|+...+ . ...+....+.|+++|.++..
T Consensus 229 ~d~vid~~g------~----~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 229 PTLIIDAAC------H----PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCEEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence 567764321 1 12466777899999999866
No 409
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=61.09 E-value=23 Score=35.36 Aligned_cols=46 Identities=9% Similarity=-0.062 Sum_probs=35.6
Q ss_pred CCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhH
Q 018352 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~ 75 (357)
+.++.+||-|+.|-. .+..++..+.++|++||+|+..+...+-+..
T Consensus 33 i~~~d~vl~ItSaG~-N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTITSAGC-NALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEccCCc-hHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 347889999987655 5555567777899999999999887765544
No 410
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=60.93 E-value=13 Score=35.94 Aligned_cols=36 Identities=31% Similarity=0.330 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHHH
Q 018352 122 EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (357)
Q Consensus 122 ~~~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~~ 157 (357)
.+..+.+|..+.++|+|||++++++..+ +.++++.-
T Consensus 216 L~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~~f 253 (305)
T TIGR00006 216 LEELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKNFF 253 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHH
Confidence 3557889999999999999999988877 66776643
No 411
>PRK05854 short chain dehydrogenase; Provisional
Probab=60.63 E-value=73 Score=30.36 Aligned_cols=83 Identities=10% Similarity=-0.096 Sum_probs=50.8
Q ss_pred CCEEEEECCCCCh---hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh----hhhhhcCC
Q 018352 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKAN 104 (357)
Q Consensus 32 ~~~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~----~~l~~~~~ 104 (357)
+.++|=.|++.|- .+..+++.+ .+|+.++-+.+..+.+.+.+.......++.++.+|+.+..-. ..+....+
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 5688888877662 222333334 589999999887777666554322223578899999764321 11222346
Q ss_pred cccEEEEccch
Q 018352 105 QADLVCCFQHL 115 (357)
Q Consensus 105 ~FDlV~~~~~l 115 (357)
..|+++.+.+.
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 78998877653
No 412
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=60.61 E-value=91 Score=29.98 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=42.2
Q ss_pred EEEEECCC-CChhHHHHH-HhcCCeEEEEeCChHH--------------H-----HHHHHHhHhcCCCceeEEEEcCCCC
Q 018352 34 TVCDLYCG-AGVDVDKWE-TALIANYIGIDVATSG--------------I-----GEARDTWENQRKNFIAEFFEADPCA 92 (357)
Q Consensus 34 ~VLDlGCG-~G~~l~k~~-~~~~~~v~GiDiS~~~--------------l-----~~A~~r~~~~~~~~~v~f~~~D~~~ 92 (357)
+||=+||| .|..+.+.+ ..+.++++.+|.+.-. + +.|.++++..+...+++.+..++..
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 47889998 465555544 4588999999853221 1 2233344443333456666666544
Q ss_pred CchhhhhhhcCCcccEEEEc
Q 018352 93 ENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 93 ~~~~~~l~~~~~~FDlV~~~ 112 (357)
.+. . --.+||+|++.
T Consensus 81 ~~~--~---f~~~fdvVi~a 95 (291)
T cd01488 81 KDE--E---FYRQFNIIICG 95 (291)
T ss_pred hhH--H---HhcCCCEEEEC
Confidence 221 1 13579999873
No 413
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=60.29 E-value=46 Score=27.84 Aligned_cols=81 Identities=12% Similarity=0.020 Sum_probs=51.7
Q ss_pred EEEEECCCCCh---hHHHHHHhcCCeEEEEeCC--hHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 34 TVCDLYCGAGV---DVDKWETALIANYIGIDVA--TSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 34 ~VLDlGCG~G~---~l~k~~~~~~~~v~GiDiS--~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
+||=.|++.|- .+..++..+...++.+.-+ .+.++.....++..+ .++.++++|+.+..-.. ......+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 57778877661 3344444556688899988 666666666665442 47899999987643211 1222357
Q ss_pred cccEEEEccchh
Q 018352 105 QADLVCCFQHLQ 116 (357)
Q Consensus 105 ~FDlV~~~~~lh 116 (357)
..|+++++.+..
T Consensus 80 ~ld~li~~ag~~ 91 (167)
T PF00106_consen 80 PLDILINNAGIF 91 (167)
T ss_dssp SESEEEEECSCT
T ss_pred cccccccccccc
Confidence 899998766543
No 414
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=60.21 E-value=36 Score=32.82 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=32.7
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHH
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARD 72 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~ 72 (357)
..++.+||=+|||. |..+..+++....+++++|.+++-++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 45788999999965 445555666544489999999998887754
No 415
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=60.19 E-value=61 Score=31.58 Aligned_cols=95 Identities=18% Similarity=0.110 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccE
Q 018352 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (357)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDl 108 (357)
.++.+||=.|||. |..+..+++....+++++|.+++....+.+.+. +..+. +..... .+....+.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~G-------a~~vi-~~~~~~---~~~~~~~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLG-------ADSFL-VSTDPE---KMKAAIGTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCC-------CcEEE-cCCCHH---HHHhhcCCCCE
Confidence 4678898899874 334455555545578889888764433322221 11111 111110 11111235898
Q ss_pred EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 109 V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+-..+ . ...+....++|++||.++..
T Consensus 251 vid~~g------~----~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 251 IIDTVS------A----VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EEECCC------C----HHHHHHHHHHhcCCcEEEEe
Confidence 875431 1 12456677899999998865
No 416
>PRK08265 short chain dehydrogenase; Provisional
Probab=59.23 E-value=1.4e+02 Score=27.29 Aligned_cols=78 Identities=10% Similarity=-0.025 Sum_probs=46.3
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.++|=.|++.| ..+.+.+.....+|+.+|.+.+.++...+... .++.++.+|+.+..-.. ......+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 468888887554 23333333334489999999876655444331 25788999998753211 11112356
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
.|+++.+.+
T Consensus 81 id~lv~~ag 89 (261)
T PRK08265 81 VDILVNLAC 89 (261)
T ss_pred CCEEEECCC
Confidence 899887654
No 417
>PRK07806 short chain dehydrogenase; Provisional
Probab=59.11 E-value=1.3e+02 Score=26.85 Aligned_cols=112 Identities=15% Similarity=-0.008 Sum_probs=58.6
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCCh-HHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCC
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVAT-SGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~-~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~ 104 (357)
+.+||-.|+..| ..+.+.+.....+|++++-+. ..++......+.. ..++.++.+|+.+..-... +....+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 468898987543 333333333344788887654 3344333333332 1256788999877432111 111224
Q ss_pred cccEEEEccchhhcc---------CCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 105 QADLVCCFQHLQMCF---------ETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~~f---------es~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
..|+|+.+.+..... .+..-...+++.+...++.+|.++..
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 688877554322100 01112345667777777667777655
No 418
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=58.85 E-value=62 Score=32.47 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=48.7
Q ss_pred CEEEEECCCC-Ch-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEE
Q 018352 33 VTVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (357)
Q Consensus 33 ~~VLDlGCG~-G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~ 110 (357)
.+||=||||. |. .+.++++.+..+|+..|-|.+..+.+...... ++++.+.|+...+-...+ -..+|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~l---i~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVAL---IKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHH---HhcCCEEE
Confidence 4789999985 43 33444555657999999998888777655432 578899998775321111 24469887
Q ss_pred Ecc
Q 018352 111 CFQ 113 (357)
Q Consensus 111 ~~~ 113 (357)
...
T Consensus 74 n~~ 76 (389)
T COG1748 74 NAA 76 (389)
T ss_pred EeC
Confidence 644
No 419
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=58.54 E-value=1e+02 Score=29.92 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=59.5
Q ss_pred CCCCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352 29 SHPYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (357)
Q Consensus 29 ~~~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~ 104 (357)
++++.+||=.|...| ..+..++++....++++--|++-.+.+++.-... -+.+... ++.+.+.. ...
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~----vi~y~~~-----~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADH----VINYREE-----DFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCE----EEcCCcc-----cHHHHHHHHcCCC
Confidence 357899999986544 5667777764437788888876666554443221 1222222 23333321 124
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
.+|+|+..-.-.+ +.+..+.|+++|.++...
T Consensus 211 gvDvv~D~vG~~~-----------~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 211 GVDVVLDTVGGDT-----------FAASLAALAPGGRLVSIG 241 (326)
T ss_pred CceEEEECCCHHH-----------HHHHHHHhccCCEEEEEe
Confidence 6999987654333 555677999999998763
No 420
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=58.45 E-value=74 Score=31.36 Aligned_cols=79 Identities=15% Similarity=-0.014 Sum_probs=46.7
Q ss_pred CCCEEEEECCCC-ChhH-HHHHHhcCCeEEEEeCCh-------------------HHHHHHHHHhHhcCCCceeEEEEcC
Q 018352 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEAD 89 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l-~k~~~~~~~~v~GiDiS~-------------------~~l~~A~~r~~~~~~~~~v~f~~~D 89 (357)
...+||=+|||. |..+ ..++..++++++.+|.+. .-.+.|+++++..+...+++.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 357999999995 4444 444555889999999654 2233455555554443455555555
Q ss_pred CCCCchhhhhhhcCCcccEEEEcc
Q 018352 90 PCAENFETQMQEKANQADLVCCFQ 113 (357)
Q Consensus 90 ~~~~~~~~~l~~~~~~FDlV~~~~ 113 (357)
+......+ .-..||+|+...
T Consensus 107 i~~~~~~~----~~~~~DvVvd~~ 126 (355)
T PRK05597 107 LTWSNALD----ELRDADVILDGS 126 (355)
T ss_pred cCHHHHHH----HHhCCCEEEECC
Confidence 44322211 125699998753
No 421
>PRK07062 short chain dehydrogenase; Provisional
Probab=58.16 E-value=96 Score=28.26 Aligned_cols=85 Identities=7% Similarity=-0.121 Sum_probs=52.1
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
.+.++|=.|++.| ..+.+.+.....+|++++.+++.++.+.+.........++.++.+|+.+..-.. ......+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 3568999998776 233333333445899999998888776665543221235778899987743211 1111236
Q ss_pred cccEEEEccch
Q 018352 105 QADLVCCFQHL 115 (357)
Q Consensus 105 ~FDlV~~~~~l 115 (357)
..|+++.+.+.
T Consensus 87 ~id~li~~Ag~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
Confidence 78998876653
No 422
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=58.10 E-value=1.2e+02 Score=29.52 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=55.4
Q ss_pred CCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCcc
Q 018352 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA 106 (357)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~F 106 (357)
.++.+||=.|+|. |..+..++++ +...++++|.++...+.+++.-. ..++. .....+...+.. ....+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~--~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVIN--PKEEDLVAAIREITGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEec--CCCcCHHHHHHHHhCCCC
Confidence 4678899988753 3344445554 55579999999887776644211 11121 111222221110 13569
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+|+..-. + ...+..+.+.|+++|.++..
T Consensus 256 d~vld~~g------~----~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 256 DYALDTTG------V----PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred cEEEECCC------C----cHHHHHHHHHhccCCEEEEe
Confidence 99875321 1 12356777889999998865
No 423
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=58.04 E-value=26 Score=29.32 Aligned_cols=37 Identities=8% Similarity=0.034 Sum_probs=24.5
Q ss_pred EECCCCC--hhHHHHHH--h-cCCeEEEEeCChHHHHHHHHH
Q 018352 37 DLYCGAG--VDVDKWET--A-LIANYIGIDVATSGIGEARDT 73 (357)
Q Consensus 37 DlGCG~G--~~l~k~~~--~-~~~~v~GiDiS~~~l~~A~~r 73 (357)
|+|+..| ..+..+.. . ...+++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66665542 2 456899999999999988887
No 424
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=57.51 E-value=91 Score=29.69 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=51.9
Q ss_pred CEEEEECCCC-ChhH-HHHHHhcC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 33 VTVCDLYCGA-GVDV-DKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l-~k~~~~~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.+|.=||+|. |+.+ ..+...+. .+|+++|.+++.++.+++. +. ... ...+ ... .-...|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~--~~~-~~~~-----~~~----~~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL--GDR-VTTS-----AAE----AVKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC--Cce-ecCC-----HHH----HhcCCCEE
Confidence 5788899997 3333 33333343 4899999999887766432 11 000 1111 111 12458998
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+..-. ......+++.+...+++|..++..
T Consensus 71 iiavp-------~~~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 71 ILCVP-------VGASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred EECCC-------HHHHHHHHHHHHhhCCCCCEEEeC
Confidence 76442 223456677788889998866543
No 425
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=57.48 E-value=96 Score=30.79 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=57.8
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~ 104 (357)
..++.+||=.|||. |..+..+++. +...++.+|.+++-++.|++.- +..+... ...++...+.. ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~G--------a~~v~~~-~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFG--------CETVDLS-KDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcC--------CeEEecC-CcccHHHHHHHHcCCC
Confidence 34677887788864 3344445554 5555777899888777776531 1111110 11122221111 224
Q ss_pred cccEEEEccchh---hccCC-HHHHHHHHHHHHhcccCCcEEEEE
Q 018352 105 QADLVCCFQHLQ---MCFET-EERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh---~~fes-~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.+|+|+-.-+-. ++++- ..+....++...+++++||.++..
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 689987544321 00000 011224677788899999999865
No 426
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=56.54 E-value=99 Score=29.36 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=55.6
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHhcCCe-EEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-CchhhhhhhcCCc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~-v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~~~~~ 105 (357)
..++.+||-.|+|. |..+..+++....+ +++++-+++..+.+++ +.. ..++..+-.. ..+.... ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~-~g~------~~~~~~~~~~~~~~~~~~--~~~~ 227 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE-LGA------DDTINPKEEDVEKVRELT--EGRG 227 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-cCC------CEEecCccccHHHHHHHh--CCCC
Confidence 34778999998764 44555666654444 9999998877766532 211 1112111111 1111111 2245
Q ss_pred ccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 106 FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
+|+|+.... . ...+..+.++|+++|.++...
T Consensus 228 ~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 228 ADLVIEAAG------S----PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCEEEECCC------C----HHHHHHHHHHhhcCCEEEEEc
Confidence 999875320 1 124667788999999988663
No 427
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=56.32 E-value=88 Score=29.14 Aligned_cols=83 Identities=8% Similarity=0.101 Sum_probs=45.1
Q ss_pred CeEEEEeCChHHHHHHHHHhHhcCCCc-eeEEEEcCCCCCchhhhhhhcCCcccEEEEccch---------hhccCCHHH
Q 018352 55 ANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADLVCCFQHL---------QMCFETEER 124 (357)
Q Consensus 55 ~~v~GiDiS~~~l~~A~~r~~~~~~~~-~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~l---------h~~fes~~~ 124 (357)
.+++.+|++++.++......+...... ...+...+ +... .-...|+|++.... ..+.++.+-
T Consensus 27 ~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~----d~~~----~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i 98 (263)
T cd00650 27 IELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITD----DPYE----AFKDADVVIITAGVGRKPGMGRLDLLKRNVPI 98 (263)
T ss_pred eEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECC----chHH----HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence 589999999877766555443321110 12222221 1111 12458998884422 122334455
Q ss_pred HHHHHHHHHhcccCCcEEEEEe
Q 018352 125 ARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 125 ~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
.+.+.+.+.+.- |.|+++..+
T Consensus 99 ~~~i~~~i~~~~-p~a~~i~~t 119 (263)
T cd00650 99 VKEIGDNIEKYS-PDAWIIVVS 119 (263)
T ss_pred HHHHHHHHHHHC-CCeEEEEec
Confidence 666677776655 888877664
No 428
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=56.32 E-value=18 Score=34.91 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHH
Q 018352 122 EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKY 156 (357)
Q Consensus 122 ~~~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~ 156 (357)
.+..+.+|.++..+|+|||++++++..+ +.++++.
T Consensus 212 l~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~ 248 (296)
T PRK00050 212 LEELERALEAALDLLKPGGRLAVISFHSLEDRIVKRF 248 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHH
Confidence 3567889999999999999999888877 6666664
No 429
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=56.19 E-value=1.2e+02 Score=29.10 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=53.5
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhh-hcCCc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ 105 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~-~~~~~ 105 (357)
..++.+||=+|||. |..+..+++. +...++++|.+++-++.+++. .. . .++.. .......... .....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga-----~-~~i~~--~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GA-----M-QTFNS--REMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC-----c-eEecC--cccCHHHHHHHhcCCC
Confidence 34678999998864 3344455554 444589999999887776432 11 1 11111 1111111000 02245
Q ss_pred cc-EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 106 AD-LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 106 FD-lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+| +|+-..+ . ...+....++|++||.++..
T Consensus 229 ~d~~v~d~~G------~----~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 229 FDQLILETAG------V----PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCeEEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence 77 6543221 1 12466677899999998866
No 430
>PRK06125 short chain dehydrogenase; Provisional
Probab=55.62 E-value=86 Score=28.53 Aligned_cols=83 Identities=8% Similarity=-0.043 Sum_probs=49.8
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
+.+||=.|++.| ..+.+.+.....+|++++.+++.++.+.+.+.... ..++.++.+|+.+..-...+-...+..|++
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~l 85 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDIL 85 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 568888898655 23333333334499999999887776665554321 125678889987643211111123578998
Q ss_pred EEccch
Q 018352 110 CCFQHL 115 (357)
Q Consensus 110 ~~~~~l 115 (357)
+...+.
T Consensus 86 v~~ag~ 91 (259)
T PRK06125 86 VNNAGA 91 (259)
T ss_pred EECCCC
Confidence 776543
No 431
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=55.36 E-value=13 Score=36.00 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCc--hHHHHHHHH
Q 018352 122 EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQK 158 (357)
Q Consensus 122 ~~~~~~~L~~i~~~LkpGG~fi~t~pd~--~~i~~~~~~ 158 (357)
.+..+.+|.++..+|+|||++++++..+ +.+++++-+
T Consensus 217 L~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~ 255 (310)
T PF01795_consen 217 LEELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFR 255 (310)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHH
Confidence 3567889999999999999999998887 666666543
No 432
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.01 E-value=67 Score=30.58 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=54.7
Q ss_pred CEEEEECCCCC-hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-CC--C--------ceeEEEEcCCCCCchhhhhh
Q 018352 33 VTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQ-RK--N--------FIAEFFEADPCAENFETQMQ 100 (357)
Q Consensus 33 ~~VLDlGCG~G-~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-~~--~--------~~v~f~~~D~~~~~~~~~l~ 100 (357)
.+|.=||+|.- +.+...+.....+|+++|.+++.++.++++.... +. . -++.+ ..| ...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~-----~~~--- 75 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAG-----LAA--- 75 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCC-----HHH---
Confidence 46788899963 3333333333348999999999998887653211 00 0 00111 111 110
Q ss_pred hcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCc
Q 018352 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (357)
Q Consensus 101 ~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~ 149 (357)
.-...|+|+..- .+..+....++..+...++++- ++.+..+.
T Consensus 76 -~~~~aDlVi~av-----~~~~~~~~~v~~~l~~~~~~~~-ii~s~tsg 117 (311)
T PRK06130 76 -AVSGADLVIEAV-----PEKLELKRDVFARLDGLCDPDT-IFATNTSG 117 (311)
T ss_pred -HhccCCEEEEec-----cCcHHHHHHHHHHHHHhCCCCc-EEEECCCC
Confidence 124578887543 2233446678888888776654 44453333
No 433
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=54.98 E-value=59 Score=27.76 Aligned_cols=101 Identities=15% Similarity=0.055 Sum_probs=54.9
Q ss_pred EEEEECCCCChhHHHHHH-hcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEc
Q 018352 34 TVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 34 ~VLDlGCG~G~~l~k~~~-~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
+|.=||+|.++.+....- ....+|+....+++.++.-++.-..........+...-....++... -...|+|+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a----~~~ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEA----LEDADIIIIA 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHH----HTT-SEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHH----hCcccEEEec
Confidence 466789998876654433 34458999999998887666543321110011111000001122221 2457888764
Q ss_pred cchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 113 ~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
-.-+. .+.+++++...|+++=.++..
T Consensus 77 vPs~~-------~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 77 VPSQA-------HREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp S-GGG-------HHHHHHHHTTTSHTT-EEEET
T ss_pred ccHHH-------HHHHHHHHhhccCCCCEEEEe
Confidence 43222 567899999999887777655
No 434
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=54.80 E-value=1.2e+02 Score=30.00 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=57.4
Q ss_pred CCCCCEEEEEC-CC-CChhHHHHHHh---cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCC-Cchhhhhhh-
Q 018352 29 SHPYVTVCDLY-CG-AGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE- 101 (357)
Q Consensus 29 ~~~~~~VLDlG-CG-~G~~l~k~~~~---~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~l~~- 101 (357)
+.++.+||=+| || -|..+..+++. +..+++++|.+++-++.|++.+........+.....|... .++...+..
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 34678999887 45 34455555554 2348999999999999887753211000001111122211 122221111
Q ss_pred -cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 102 -KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 102 -~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
....+|+|+..-+ . ...+....+.|+++|.++..
T Consensus 253 t~g~g~D~vid~~g------~----~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVP------V----PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCC------C----HHHHHHHHHHhccCCeEEEE
Confidence 2346998875321 1 12456677889988866543
No 435
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=54.68 E-value=1.5e+02 Score=28.74 Aligned_cols=93 Identities=18% Similarity=0.127 Sum_probs=50.3
Q ss_pred EEEEECCC-CChhHH-HHHHhcCCeEEEEeCChHHH-------------------HHHHHHhHhcCCCceeEEEEcCCCC
Q 018352 34 TVCDLYCG-AGVDVD-KWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEADPCA 92 (357)
Q Consensus 34 ~VLDlGCG-~G~~l~-k~~~~~~~~v~GiDiS~~~l-------------------~~A~~r~~~~~~~~~v~f~~~D~~~ 92 (357)
+||=+||| .|..+. .++..+.++++.+|.+.-.+ +.|.+++++.+...+++.+..++..
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 47889998 354444 44456899999999532221 2233444443333456666666654
Q ss_pred CchhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcc
Q 018352 93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL 136 (357)
Q Consensus 93 ~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~L 136 (357)
..+... .-.+||+|++.. .+.+ .+..+.++++..
T Consensus 81 ~~~~~~---f~~~~DvVv~a~------Dn~~-ar~~in~~c~~~ 114 (312)
T cd01489 81 PDFNVE---FFKQFDLVFNAL------DNLA-ARRHVNKMCLAA 114 (312)
T ss_pred ccchHH---HHhcCCEEEECC------CCHH-HHHHHHHHHHHC
Confidence 322111 125799998743 2233 455555555443
No 436
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=54.38 E-value=1.5e+02 Score=28.24 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
..++.+||=.|||. |..+..+++....++++++.+++.++.+++ +... .++ +.....+...+... ..+|
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~~------~~i--~~~~~~~~~~~~~~-~~~d 230 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGAH------HYI--DTSKEDVAEALQEL-GGAK 230 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCCc------EEe--cCCCccHHHHHHhc-CCCC
Confidence 34678999999753 334445555544579999999888777743 2111 111 22222232222212 3589
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+...+ + ...+..+.+.|+++|.++..
T Consensus 231 ~vi~~~g------~----~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 231 LILATAP------N----AKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred EEEECCC------c----hHHHHHHHHHcccCCEEEEE
Confidence 8875321 1 12466778899999999865
No 437
>PRK07904 short chain dehydrogenase; Provisional
Probab=54.29 E-value=98 Score=28.34 Aligned_cols=84 Identities=10% Similarity=-0.008 Sum_probs=49.7
Q ss_pred CCCCEEEEECCCCCh--h-HHHHHHhcCCeEEEEeCChHH-HHHHHHHhHhcCCCceeEEEEcCCCCCchh----hhhhh
Q 018352 30 HPYVTVCDLYCGAGV--D-VDKWETALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQE 101 (357)
Q Consensus 30 ~~~~~VLDlGCG~G~--~-l~k~~~~~~~~v~GiDiS~~~-l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~----~~l~~ 101 (357)
..+.+||=.||+.|- . +..+++.+..+|+.++-+++. ++.+.+..+... ..++.++.+|+.+..-. .....
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh
Confidence 345689999987651 2 222333344589999988764 665555444321 12688999999764421 11111
Q ss_pred cCCcccEEEEccch
Q 018352 102 KANQADLVCCFQHL 115 (357)
Q Consensus 102 ~~~~FDlV~~~~~l 115 (357)
.+..|++++..+.
T Consensus 85 -~g~id~li~~ag~ 97 (253)
T PRK07904 85 -GGDVDVAIVAFGL 97 (253)
T ss_pred -cCCCCEEEEeeec
Confidence 2579988765543
No 438
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=54.00 E-value=59 Score=31.11 Aligned_cols=42 Identities=12% Similarity=-0.125 Sum_probs=28.7
Q ss_pred CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHh
Q 018352 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTW 74 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~ 74 (357)
.+|.=||+|. |..+...+.....+|+++|.+++.++.++.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~ 45 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYI 45 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHH
Confidence 3678889885 43333333333348999999999888877653
No 439
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=53.74 E-value=1e+02 Score=29.38 Aligned_cols=104 Identities=19% Similarity=0.154 Sum_probs=63.8
Q ss_pred CEEEEECCCC-ChhHHHHHHh-cC-CeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 33 VTVCDLYCGA-GVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~-~~-~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.+|+=+|.|. |+.+...++. +. ..++|.|.+...++.|.+.- +.+-..+. ... ......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--------v~d~~~~~---~~~----~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--------VIDELTVA---GLA----EAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--------cccccccc---hhh----hhcccCCEE
Confidence 5788889885 4444333333 33 45799999988877665431 11111110 000 023568999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~ 158 (357)
+..- .......+++++...|++|-.+.-++.....+++.+++
T Consensus 69 ivav-------Pi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~ 110 (279)
T COG0287 69 IVAV-------PIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEK 110 (279)
T ss_pred EEec-------cHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHH
Confidence 7654 34457788999999999998887666666666665543
No 440
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=53.70 E-value=1.2e+02 Score=28.05 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=24.3
Q ss_pred CCEEEEECCCC-ChhHH-HHHHhcCCeEEEEeCChH
Q 018352 32 YVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATS 65 (357)
Q Consensus 32 ~~~VLDlGCG~-G~~l~-k~~~~~~~~v~GiDiS~~ 65 (357)
+.+||=+|||. |..+. .++..+.++++.+|.+..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 47899999984 54444 444558889999986543
No 441
>PRK07890 short chain dehydrogenase; Provisional
Probab=53.58 E-value=1.1e+02 Score=27.68 Aligned_cols=81 Identities=12% Similarity=-0.020 Sum_probs=49.8
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....+|+++|.++..++...+...... .++.++.+|+.+..-.. .....-+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 568888887655 23333333344589999999887776665554322 25788999987643211 11112356
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
.|+|+.+.+
T Consensus 83 ~d~vi~~ag 91 (258)
T PRK07890 83 VDALVNNAF 91 (258)
T ss_pred ccEEEECCc
Confidence 899887664
No 442
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.49 E-value=1.8e+02 Score=26.58 Aligned_cols=109 Identities=15% Similarity=0.076 Sum_probs=58.5
Q ss_pred CCEEEEECCC--CC--hhHHHHHHhcCCeEEEEeCCh--HHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhh
Q 018352 32 YVTVCDLYCG--AG--VDVDKWETALIANYIGIDVAT--SGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE 101 (357)
Q Consensus 32 ~~~VLDlGCG--~G--~~l~k~~~~~~~~v~GiDiS~--~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~ 101 (357)
+.++|=.|+| .| ..+.+.+.....+|+.+|.+. +.++...+.... ++.++.+|+.+..-.. ....
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPE-----PAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCC-----CCcEEeCCCCCHHHHHHHHHHHHH
Confidence 4688989983 33 233333333445888888764 344443333221 4667889987743211 1112
Q ss_pred cCCcccEEEEccchhh------ccC--CHHHHH-----------HHHHHHHhcccCCcEEEEE
Q 018352 102 KANQADLVCCFQHLQM------CFE--TEERAR-----------RLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 102 ~~~~FDlV~~~~~lh~------~fe--s~~~~~-----------~~L~~i~~~LkpGG~fi~t 145 (357)
..+.+|+++.+.++.. -+. +.++.. .+.+.+...++++|.++.+
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~i 144 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGL 144 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEE
Confidence 2467999888665421 011 122221 2445566677778877655
No 443
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=53.49 E-value=1.3e+02 Score=27.24 Aligned_cols=82 Identities=10% Similarity=-0.015 Sum_probs=50.8
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
.+.+||=.|++.| ..+.+.+.....+|++++-+++.++...+..+... .++.++.+|+.+..-.. ......+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678998897654 23333333334589999999888776666554432 25778999987643211 1111235
Q ss_pred cccEEEEccc
Q 018352 105 QADLVCCFQH 114 (357)
Q Consensus 105 ~FDlV~~~~~ 114 (357)
+.|+|+...+
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 6899887654
No 444
>PRK06940 short chain dehydrogenase; Provisional
Probab=53.48 E-value=98 Score=28.73 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=58.1
Q ss_pred EEEEECCC-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh-hh--hcCCcccEE
Q 018352 34 TVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQ--EKANQADLV 109 (357)
Q Consensus 34 ~VLDlGCG-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~-l~--~~~~~FDlV 109 (357)
.+|=-|+| -|..+.+.+. ...+|+++|.+++.++.+.+..+.. ..++.++.+|+.+..-... +. ...+..|++
T Consensus 4 ~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 45555643 2223333333 4468999999988777666555432 2257788999977432111 11 123578998
Q ss_pred EEccchhhccCCHH--------HHHHHHHHHHhcccCCcEEEEE
Q 018352 110 CCFQHLQMCFETEE--------RARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 110 ~~~~~lh~~fes~~--------~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+.+.+.....+..+ -.-.+++.+...++.+|..+.+
T Consensus 81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 87765432111111 1123455555666666655443
No 445
>PRK12829 short chain dehydrogenase; Provisional
Probab=53.19 E-value=83 Score=28.46 Aligned_cols=80 Identities=11% Similarity=-0.052 Sum_probs=48.7
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
++.+||=.|++.| ..+.+.+.....+|++++-+++.++...+..... ++.++.+|+.+..-.. ......+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----KVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5679999998644 3333333344458999999887776554444322 5678899987643211 1111225
Q ss_pred cccEEEEccc
Q 018352 105 QADLVCCFQH 114 (357)
Q Consensus 105 ~FDlV~~~~~ 114 (357)
.+|+|+...+
T Consensus 86 ~~d~vi~~ag 95 (264)
T PRK12829 86 GLDVLVNNAG 95 (264)
T ss_pred CCCEEEECCC
Confidence 6899887554
No 446
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=52.51 E-value=20 Score=39.09 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=61.6
Q ss_pred CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCc---------hhhhhhhc
Q 018352 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN---------FETQMQEK 102 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~---------~~~~l~~~ 102 (357)
.+|-=||+|+ |.-+..+.......|+.+|.+++.++.+.++.+..-.. .+ ..+-+.... ....+. .
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~-~~--~~g~~~~~~~~~~~~~i~~~~~~~-~ 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNK-KV--KRKKITSLERDSILSNLTPTLDYS-G 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHH-HH--HcCCCCHHHHHHHHhCeEEeCCHH-H
Confidence 4688899997 33333333333449999999999999988876532000 00 000000000 000000 1
Q ss_pred CCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 103 ~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
-...|+|+ .-.+|+.+-.+++++++..+++|+.+|.-.
T Consensus 412 ~~~aDlVi-----EAv~E~l~~K~~vf~~l~~~~~~~~ilasN 449 (737)
T TIGR02441 412 FKNADMVI-----EAVFEDLSLKHKVIKEVEAVVPPHCIIASN 449 (737)
T ss_pred hccCCeeh-----hhccccHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 13466664 335889999999999999999999766533
No 447
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=52.40 E-value=1.7e+02 Score=26.00 Aligned_cols=82 Identities=12% Similarity=-0.047 Sum_probs=47.3
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh-h---hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-T---QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~---~l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....+|++++-+...+..+........ .++.++.+|+.+..-. . ......+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 467888886543 22333333333489999998776665555444332 2578899998764311 1 11112246
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
+|+|++..+.
T Consensus 84 ~d~vi~~ag~ 93 (251)
T PRK12826 84 LDILVANAGI 93 (251)
T ss_pred CCEEEECCCC
Confidence 8998876643
No 448
>PRK09072 short chain dehydrogenase; Provisional
Probab=52.31 E-value=1.8e+02 Score=26.35 Aligned_cols=80 Identities=9% Similarity=-0.061 Sum_probs=49.3
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....+|++++.+++.++........ ..++.++.+|+.+..-.. ... ..+.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~-~~~~ 80 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAR-EMGG 80 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHH-hcCC
Confidence 467888887654 333333333445899999998887766555421 226788899987743211 111 1356
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
.|+|+...+.
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 8998876543
No 449
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=52.22 E-value=58 Score=30.41 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=50.9
Q ss_pred HHHhc-CCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEEccchhhccCCHHHHHH
Q 018352 49 WETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR 127 (357)
Q Consensus 49 ~~~~~-~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~ 127 (357)
+.+.+ ..+|+|+|.++..++.|.+.-- ... ... .. + .-..+|+|+..- .......
T Consensus 5 L~~~g~~~~v~g~d~~~~~~~~a~~~g~----~~~---~~~-----~~-~----~~~~~Dlvvlav-------P~~~~~~ 60 (258)
T PF02153_consen 5 LRKAGPDVEVYGYDRDPETLEAALELGI----IDE---AST-----DI-E----AVEDADLVVLAV-------PVSAIED 60 (258)
T ss_dssp HHHTTTTSEEEEE-SSHHHHHHHHHTTS----SSE---EES-----HH-H----HGGCCSEEEE-S--------HHHHHH
T ss_pred HHhCCCCeEEEEEeCCHHHHHHHHHCCC----eee---ccC-----CH-h----HhcCCCEEEEcC-------CHHHHHH
Confidence 33444 4699999999999888754411 000 111 00 1 124579987544 4556888
Q ss_pred HHHHHHhcccCCcEEEEEeCCchHHHHHHHH
Q 018352 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (357)
Q Consensus 128 ~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~~ 158 (357)
+++++...+++|+.+.=+..-...+.+.+++
T Consensus 61 ~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~ 91 (258)
T PF02153_consen 61 VLEEIAPYLKPGAIVTDVGSVKAPIVEAMER 91 (258)
T ss_dssp HHHHHHCGS-TTSEEEE--S-CHHHHHHHHH
T ss_pred HHHHhhhhcCCCcEEEEeCCCCHHHHHHHHH
Confidence 9999999999998777666555666666654
No 450
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=52.21 E-value=69 Score=34.78 Aligned_cols=104 Identities=8% Similarity=-0.074 Sum_probs=60.6
Q ss_pred CEEEEECCCCC-h-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcC----CCceeEEEEcCC--CCCchhhhhhhcCC
Q 018352 33 VTVCDLYCGAG-V-DVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADP--CAENFETQMQEKAN 104 (357)
Q Consensus 33 ~~VLDlGCG~G-~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~----~~~~v~f~~~D~--~~~~~~~~l~~~~~ 104 (357)
.+|-=||+|+= . .+..++.++ -.|+.+|.+++.++.+.++....- ....++-...+. ........+. .-.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG-TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD 391 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 36888999973 3 333344444 499999999999998887664310 000000000000 0000000000 124
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
..|+|+=. .+|+.+-.+++++++.++++|+.+|.
T Consensus 392 ~aDlViEa-----v~E~l~~K~~vf~~l~~~~~~~~ila 425 (714)
T TIGR02437 392 NVDIVVEA-----VVENPKVKAAVLAEVEQHVREDAILA 425 (714)
T ss_pred CCCEEEEc-----CcccHHHHHHHHHHHHhhCCCCcEEE
Confidence 57777543 48889999999999999999986654
No 451
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=52.13 E-value=1.6e+02 Score=28.18 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh--cCC
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~--~~~ 104 (357)
..++.+||=.|+|. |..+..+++. +..++++++.+++..+.+++. .. + .+ .|.....+...+.. ..+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga-----~-~~--i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA-----T-IV--LDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC-----C-EE--ECCCccCHHHHHHHHhCCC
Confidence 34678888888652 3344455555 444899999999888777542 11 1 11 12222223222211 224
Q ss_pred cccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 105 ~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
.+|+|+-... . ...++.+.+.|+++|.++..
T Consensus 241 ~~d~vid~~g------~----~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 241 GVDVSFDCAG------V----QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCEEEECCC------C----HHHHHHHHHhccCCCEEEEE
Confidence 5999875431 1 12456777899999998865
No 452
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.07 E-value=1.9e+02 Score=26.41 Aligned_cols=111 Identities=10% Similarity=-0.019 Sum_probs=58.5
Q ss_pred CCCEEEEECCCC--C--hhH-HHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchh----hhhhh
Q 018352 31 PYVTVCDLYCGA--G--VDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQE 101 (357)
Q Consensus 31 ~~~~VLDlGCG~--G--~~l-~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~----~~l~~ 101 (357)
.+.++|=.|++. | ..+ ..+++.+ .+|+.+|.+....+...+..+... .+.++.+|+.+..-. .....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 356889899764 3 222 3333334 488888888654332322222211 245688898764321 11222
Q ss_pred cCCcccEEEEccchhhc------c--CCHHHHHH-----------HHHHHHhcccCCcEEEEE
Q 018352 102 KANQADLVCCFQHLQMC------F--ETEERARR-----------LLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 102 ~~~~FDlV~~~~~lh~~------f--es~~~~~~-----------~L~~i~~~LkpGG~fi~t 145 (357)
..+..|+++++.++... + .+.++.+. +.+.+...++.+|.++.+
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 23678998877654210 1 12333332 235556666777877654
No 453
>PRK05867 short chain dehydrogenase; Provisional
Probab=52.05 E-value=1.2e+02 Score=27.39 Aligned_cols=83 Identities=11% Similarity=-0.078 Sum_probs=51.3
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
.+.++|=.|++.| ..+.+.+.....+|++++.+.+.++...+..+... .++.++.+|+.+..-.. ......+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4578999998765 22333333344589999999888777666554432 25778899987643211 1111235
Q ss_pred cccEEEEccch
Q 018352 105 QADLVCCFQHL 115 (357)
Q Consensus 105 ~FDlV~~~~~l 115 (357)
..|+++.+.+.
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 78998876554
No 454
>PRK06172 short chain dehydrogenase; Provisional
Probab=51.75 E-value=1.1e+02 Score=27.62 Aligned_cols=81 Identities=14% Similarity=-0.099 Sum_probs=49.8
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch-hh---hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ET---QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~-~~---~l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....+|+.++-+++.++.+.+..+... .++.++.+|+.+..- .. ......+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 568898987654 23333333344589999999887776655554332 257889999976431 11 11112357
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
.|+|+...+
T Consensus 85 id~li~~ag 93 (253)
T PRK06172 85 LDYAFNNAG 93 (253)
T ss_pred CCEEEECCC
Confidence 899987664
No 455
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=51.63 E-value=1.3e+02 Score=28.61 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=56.1
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHhcCCe-EEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch---hhhhhh--
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF---ETQMQE-- 101 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~-v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~---~~~l~~-- 101 (357)
+.++.+||-.|+|. |..+..+++....+ +++++-+++..+.+++. ... .++..+ .... ...+..
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~vi~~~--~~~~~~~~~~~~~~~ 230 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT------HTVNVR--TEDTPESAEKIAELL 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc------EEeccc--cccchhHHHHHHHHh
Confidence 45788888888764 44555565653334 89999888877766442 111 111111 1111 111111
Q ss_pred cCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEe
Q 018352 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 102 ~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~ 146 (357)
....+|+|+-... . ...+....+.|+++|+++...
T Consensus 231 ~~~~~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTG------A----ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCC------C----HHHHHHHHHHhhcCCEEEEEc
Confidence 2345999975431 1 114667788999999988653
No 456
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=51.14 E-value=1.4e+02 Score=27.29 Aligned_cols=83 Identities=11% Similarity=0.010 Sum_probs=52.2
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
.+.++|=.|++.| ..+.+.+.....+++.++-+++.++.+.+.++..+ .++.++.+|+.+..-.. ......+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4568999998765 23333333344589999999888877666665432 25778899987643211 1111235
Q ss_pred cccEEEEccch
Q 018352 105 QADLVCCFQHL 115 (357)
Q Consensus 105 ~FDlV~~~~~l 115 (357)
..|++++..+.
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 78999877654
No 457
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=50.90 E-value=64 Score=30.88 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=51.0
Q ss_pred CCCEEEEECCCCC-hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~G-~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.+.+|+=+|+|.- ..+...++....+|+.+|.++...+.++. . .+.+...+ .+.. .-..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~----G~~~~~~~----~l~~----~l~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----M----GLSPFHLS----ELAE----EVGKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----c----CCeeecHH----HHHH----HhCCCCEE
Confidence 5789999999863 33444444444599999999876555432 1 12222111 1111 12569999
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+..-..+ .+-+...+.+++|+.++=+
T Consensus 215 I~t~p~~----------~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 215 FNTIPAL----------VLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred EECCChh----------hhhHHHHHcCCCCcEEEEE
Confidence 8743211 1224455678898887744
No 458
>PRK07677 short chain dehydrogenase; Provisional
Probab=50.57 E-value=90 Score=28.23 Aligned_cols=80 Identities=15% Similarity=-0.052 Sum_probs=48.7
Q ss_pred CEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCCcc
Q 018352 33 VTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQA 106 (357)
Q Consensus 33 ~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~~F 106 (357)
.++|=.|++.| ..+.+.+.....+|+++|-+...++.+.+..+... .++.++.+|+.+..-... .....+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57888888765 33333333344589999999887776666554321 257889999876432111 11123568
Q ss_pred cEEEEccc
Q 018352 107 DLVCCFQH 114 (357)
Q Consensus 107 DlV~~~~~ 114 (357)
|+|+...+
T Consensus 80 d~lI~~ag 87 (252)
T PRK07677 80 DALINNAA 87 (252)
T ss_pred cEEEECCC
Confidence 99876543
No 459
>PRK06197 short chain dehydrogenase; Provisional
Probab=50.49 E-value=1.1e+02 Score=28.76 Aligned_cols=85 Identities=9% Similarity=-0.122 Sum_probs=49.8
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
.+.+||=.|+..| ..+.+.+.....++++++-+.+..+.+.+.........++.++.+|+.+..-.. .+....+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 4568888886544 222222223334899999888777666555443211235788999997754211 1111235
Q ss_pred cccEEEEccch
Q 018352 105 QADLVCCFQHL 115 (357)
Q Consensus 105 ~FDlV~~~~~l 115 (357)
..|+|+.+.++
T Consensus 95 ~iD~li~nAg~ 105 (306)
T PRK06197 95 RIDLLINNAGV 105 (306)
T ss_pred CCCEEEECCcc
Confidence 68999877654
No 460
>PRK07877 hypothetical protein; Provisional
Probab=50.44 E-value=1.2e+02 Score=33.08 Aligned_cols=78 Identities=12% Similarity=0.010 Sum_probs=48.0
Q ss_pred CCCEEEEECCCCChhHHHHHH-hcC-CeEEEEeCChHHH------------------HHHHHHhHhcCCCceeEEEEcCC
Q 018352 31 PYVTVCDLYCGAGVDVDKWET-ALI-ANYIGIDVATSGI------------------GEARDTWENQRKNFIAEFFEADP 90 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~-~~~-~~v~GiDiS~~~l------------------~~A~~r~~~~~~~~~v~f~~~D~ 90 (357)
...+|+=+|||-|+.....+. .+. ++++-+|.+.-.+ +.|++++...+...+++.+...+
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 357999999998876655544 574 8999988543222 22444444444444666777766
Q ss_pred CCCchhhhhhhcCCcccEEEEc
Q 018352 91 CAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 91 ~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
....+... -..+|+|+..
T Consensus 186 ~~~n~~~~----l~~~DlVvD~ 203 (722)
T PRK07877 186 TEDNVDAF----LDGLDVVVEE 203 (722)
T ss_pred CHHHHHHH----hcCCCEEEEC
Confidence 55444322 2458999863
No 461
>PRK06128 oxidoreductase; Provisional
Probab=50.42 E-value=1.8e+02 Score=27.23 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=58.9
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChH--HHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcC
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATS--GIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~--~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~ 103 (357)
+.+||=.|++.| ..+.+.+.....+|+.++.+.+ ..+...+..+.. ..++.++.+|+.+..-.. ......
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 468999997655 2222222333347777766533 233333333322 125678899997743211 111123
Q ss_pred CcccEEEEccchhhc---cC--CHHHHH-----------HHHHHHHhcccCCcEEEEE
Q 018352 104 NQADLVCCFQHLQMC---FE--TEERAR-----------RLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 104 ~~FDlV~~~~~lh~~---fe--s~~~~~-----------~~L~~i~~~LkpGG~fi~t 145 (357)
+..|+++.+.+.... +. +.++.. .+++.+...++.+|.++.+
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 578999877654211 11 222222 3556666677788887765
No 462
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=50.38 E-value=1.2e+02 Score=29.47 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=61.6
Q ss_pred CCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
.+.+|.=||+|. |..+.+.+.....+|++.|.++..... .+.+ . ..+.+ .-...|+|
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~------------~~~~-~-----~~l~e----ll~~aDiV 202 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD------------FLTY-K-----DSVKE----AIKDADII 202 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh------------hhhc-c-----CCHHH----HHhcCCEE
Confidence 467899999997 444455555545589999998643210 0000 0 11211 12568998
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE----eCCchHHHHHHH
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI----TPDSSTIWAKYQ 157 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t----~pd~~~i~~~~~ 157 (357)
++.-.. +.+....+.+++...+|+|.+|+-+ ..|.+.+++.++
T Consensus 203 il~lP~-----t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 203 SLHVPA-----NKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred EEeCCC-----cHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 764421 3333445567888899999988866 567777877665
No 463
>PRK06181 short chain dehydrogenase; Provisional
Probab=50.20 E-value=2e+02 Score=26.06 Aligned_cols=80 Identities=8% Similarity=-0.072 Sum_probs=46.3
Q ss_pred CEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCCcc
Q 018352 33 VTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQA 106 (357)
Q Consensus 33 ~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~~F 106 (357)
.+||=.|+..| ..+.+.+.....+|++++.++..++...+..... ..++.++.+|+.+..-... ....-+..
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH--GGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46787786443 2333333334458999999987776655544433 2257788999877432111 11112468
Q ss_pred cEEEEccc
Q 018352 107 DLVCCFQH 114 (357)
Q Consensus 107 DlV~~~~~ 114 (357)
|+|+...+
T Consensus 80 d~vi~~ag 87 (263)
T PRK06181 80 DILVNNAG 87 (263)
T ss_pred CEEEECCC
Confidence 99887654
No 464
>PRK14852 hypothetical protein; Provisional
Probab=49.85 E-value=2.1e+02 Score=32.39 Aligned_cols=77 Identities=14% Similarity=-0.015 Sum_probs=46.1
Q ss_pred CCCEEEEECCC-CChhHH-HHHHhcCCeEEEEeCChHHH-------------------HHHHHHhHhcCCCceeEEEEcC
Q 018352 31 PYVTVCDLYCG-AGVDVD-KWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (357)
Q Consensus 31 ~~~~VLDlGCG-~G~~l~-k~~~~~~~~v~GiDiS~~~l-------------------~~A~~r~~~~~~~~~v~f~~~D 89 (357)
...+|+=+||| -|+... .++..++++++.+|.+.-.+ +.++++++..+...+++.+...
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~ 410 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG 410 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence 36799999999 566544 44455889999988543222 2234444444334456666555
Q ss_pred CCCCchhhhhhhcCCcccEEEE
Q 018352 90 PCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 90 ~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
+........ -..+|+|+.
T Consensus 411 I~~en~~~f----l~~~DiVVD 428 (989)
T PRK14852 411 VAAETIDAF----LKDVDLLVD 428 (989)
T ss_pred CCHHHHHHH----hhCCCEEEE
Confidence 544333221 246999986
No 465
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.80 E-value=2.1e+02 Score=26.20 Aligned_cols=80 Identities=13% Similarity=-0.014 Sum_probs=43.7
Q ss_pred CCCEEEEECCC----CChhHHHHHHhcCCeEEEEeCCh---HHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hh
Q 018352 31 PYVTVCDLYCG----AGVDVDKWETALIANYIGIDVAT---SGIGEARDTWENQRKNFIAEFFEADPCAENFET----QM 99 (357)
Q Consensus 31 ~~~~VLDlGCG----~G~~l~k~~~~~~~~v~GiDiS~---~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l 99 (357)
.+.++|=.|++ -|..+.+.+.....+|+.++.+. +.++...+..+ ..++.++.+|+.+..-.. .+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE----GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC----CCceEEEecCCCCHHHHHHHHHHH
Confidence 35688988975 34333333333344788876542 33443333322 125778899998753211 12
Q ss_pred hhcCCcccEEEEccc
Q 018352 100 QEKANQADLVCCFQH 114 (357)
Q Consensus 100 ~~~~~~FDlV~~~~~ 114 (357)
....+..|+++.+.+
T Consensus 82 ~~~~g~ld~lv~nag 96 (257)
T PRK08594 82 KEEVGVIHGVAHCIA 96 (257)
T ss_pred HHhCCCccEEEECcc
Confidence 222467899876544
No 466
>PRK06194 hypothetical protein; Provisional
Probab=49.77 E-value=1.1e+02 Score=28.23 Aligned_cols=82 Identities=12% Similarity=-0.001 Sum_probs=49.1
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....+|+.+|.+.+.++...+..... ..++.++.+|+.+..-.. ......+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 467887776543 2333333334458999999988777665555432 225788999987643211 11112356
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
.|+|+...+.
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 8999887654
No 467
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=49.65 E-value=1.1e+02 Score=27.81 Aligned_cols=77 Identities=10% Similarity=-0.069 Sum_probs=48.0
Q ss_pred EEEEECCCCC--h-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCcc
Q 018352 34 TVCDLYCGAG--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQA 106 (357)
Q Consensus 34 ~VLDlGCG~G--~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~F 106 (357)
+||=.|++.| . .+..+++.+ .+|+.++.+++.++.+.+..+... ++.++.+|+.+..-.. ......+..
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKG-ARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 5777887665 2 223333344 489999999988877766654331 5678899987643211 111123678
Q ss_pred cEEEEccc
Q 018352 107 DLVCCFQH 114 (357)
Q Consensus 107 DlV~~~~~ 114 (357)
|+++.+.+
T Consensus 78 d~li~naG 85 (259)
T PRK08340 78 DALVWNAG 85 (259)
T ss_pred CEEEECCC
Confidence 99887654
No 468
>PRK09186 flagellin modification protein A; Provisional
Probab=49.63 E-value=1.2e+02 Score=27.31 Aligned_cols=82 Identities=15% Similarity=-0.007 Sum_probs=48.0
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....++++++.+++.++.+.+..........+.++.+|+.+..-.. .....-+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 83 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGK 83 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 567888887543 333333333445899999998887766655532211124567789997743211 11112355
Q ss_pred ccEEEEcc
Q 018352 106 ADLVCCFQ 113 (357)
Q Consensus 106 FDlV~~~~ 113 (357)
.|+|+.+.
T Consensus 84 id~vi~~A 91 (256)
T PRK09186 84 IDGAVNCA 91 (256)
T ss_pred ccEEEECC
Confidence 89988664
No 469
>PRK07831 short chain dehydrogenase; Provisional
Probab=49.59 E-value=1.1e+02 Score=27.74 Aligned_cols=84 Identities=17% Similarity=0.057 Sum_probs=50.9
Q ss_pred CCEEEEECC-C--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCC
Q 018352 32 YVTVCDLYC-G--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (357)
Q Consensus 32 ~~~VLDlGC-G--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~ 104 (357)
+.++|=.|+ | -|..+.+.+.....+|+.+|.+...++.+.+..+......++.++.+|+.+..-... .....+
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 96 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLG 96 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567888885 3 344444444444457999999988887776665432111257788999876432111 111235
Q ss_pred cccEEEEccch
Q 018352 105 QADLVCCFQHL 115 (357)
Q Consensus 105 ~FDlV~~~~~l 115 (357)
..|+++.+.+.
T Consensus 97 ~id~li~~ag~ 107 (262)
T PRK07831 97 RLDVLVNNAGL 107 (262)
T ss_pred CCCEEEECCCC
Confidence 78998877654
No 470
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.50 E-value=1.9e+02 Score=26.72 Aligned_cols=96 Identities=19% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCC--CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG--~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
..++.+||=.|++ .|..+..+++....++++++.+++..+.+++ + + +..+..+ ...+...+......+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~---g----~~~~~~~--~~~~~~~i~~~~~~~ 209 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE-L---G----ADEVVID--DGAIAEQLRAAPGGF 209 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---C----CcEEEec--CccHHHHHHHhCCCc
Confidence 3467899988863 4555566666655689999999877666532 1 1 1111111 122322222113569
Q ss_pred cEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 DlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+|+.... . ..+..+.+.|+++|.++..
T Consensus 210 d~vl~~~~------~-----~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 210 DKVLELVG------T-----ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred eEEEECCC------h-----HHHHHHHHHhccCCEEEEE
Confidence 99875331 1 2466777899999998765
No 471
>PRK08251 short chain dehydrogenase; Provisional
Probab=49.34 E-value=1.7e+02 Score=26.14 Aligned_cols=80 Identities=8% Similarity=-0.049 Sum_probs=48.9
Q ss_pred CEEEEECCCCChhHH----HHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 33 VTVCDLYCGAGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 33 ~~VLDlGCG~G~~l~----k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
.+||=.|+..| .-. .+++.+ .+|+.++-+++.++.............++.++.+|+.+..-.. .+....+
T Consensus 3 k~vlItGas~g-iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSG-LGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56888886554 332 333334 5899999998888766655543322336888999998753211 1111235
Q ss_pred cccEEEEccc
Q 018352 105 QADLVCCFQH 114 (357)
Q Consensus 105 ~FDlV~~~~~ 114 (357)
..|+|+.+.+
T Consensus 81 ~id~vi~~ag 90 (248)
T PRK08251 81 GLDRVIVNAG 90 (248)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 472
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=49.04 E-value=1.5e+02 Score=27.78 Aligned_cols=90 Identities=17% Similarity=0.059 Sum_probs=54.0
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCccc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FD 107 (357)
..++.+||=.|+|. |..+..+++....++++++.+++..+.+++ +... . ..+.... . ..+.+|
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~~-------~-~~~~~~~-~------~~~~~d 216 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGVE-------T-VLPDEAE-S------EGGGFD 216 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCc-------E-EeCcccc-c------cCCCCC
Confidence 34678898887652 333344455544569999999988887765 2111 0 0111110 1 235699
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~ 144 (357)
+|+...+ . ...+..+.+.|+++|.++.
T Consensus 217 ~vid~~g------~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 217 VVVEATG------S----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEEECCC------C----hHHHHHHHHHhhcCCEEEE
Confidence 9876431 1 1245667778999999986
No 473
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=48.79 E-value=1.2e+02 Score=30.06 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=24.0
Q ss_pred CCCEEEEECCCC-ChhHHH-HHHhcCCeEEEEeCC
Q 018352 31 PYVTVCDLYCGA-GVDVDK-WETALIANYIGIDVA 63 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k-~~~~~~~~v~GiDiS 63 (357)
...+||=+|||. |..+.+ ++..+.++++.+|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 357999999994 444444 444588899999975
No 474
>PRK07035 short chain dehydrogenase; Provisional
Probab=48.73 E-value=1.7e+02 Score=26.22 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=49.3
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.+||=.|++.| ..+...+.....+|+++|.+...++...+.....+ .++.++.+|+.+..-.. .....-+.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHGR 85 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 467888898876 23333333334599999999887776665554332 25678889987643211 11112356
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
.|++++..+
T Consensus 86 id~li~~ag 94 (252)
T PRK07035 86 LDILVNNAA 94 (252)
T ss_pred CCEEEECCC
Confidence 899887654
No 475
>PRK08655 prephenate dehydrogenase; Provisional
Probab=48.21 E-value=1.6e+02 Score=29.90 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=53.7
Q ss_pred EEEEEC-CC-CChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEEEE
Q 018352 34 TVCDLY-CG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (357)
Q Consensus 34 ~VLDlG-CG-~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV~~ 111 (357)
+|+=+| +| -|+.+...+.....+|+++|.+++........ . .+.+ ..| ... .-...|+|+.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~---~----gv~~-~~~-----~~e----~~~~aDvVIl 64 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE---L----GVEY-AND-----NID----AAKDADIVII 64 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH---c----CCee-ccC-----HHH----HhccCCEEEE
Confidence 567786 66 45444444444334899999987664322111 1 1111 111 111 1245799876
Q ss_pred ccchhhccCCHHHHHHHHHHHHhcccCCcEEEEEeCCchHHHHHHH
Q 018352 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (357)
Q Consensus 112 ~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t~pd~~~i~~~~~ 157 (357)
.-. ......++..+...+++|..++-+..-...+.+.+.
T Consensus 65 avp-------~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~ 103 (437)
T PRK08655 65 SVP-------INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAME 103 (437)
T ss_pred ecC-------HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHH
Confidence 442 234567788888889888755544332344444444
No 476
>PRK05884 short chain dehydrogenase; Provisional
Probab=47.37 E-value=2.1e+02 Score=25.57 Aligned_cols=106 Identities=10% Similarity=0.011 Sum_probs=55.8
Q ss_pred EEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh-hhhcCCcccEEE
Q 018352 34 TVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQEKANQADLVC 110 (357)
Q Consensus 34 ~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~-l~~~~~~FDlV~ 110 (357)
++|=.|++.| ..+.+.+.....+++.++.+.+.++...+.. ++.++.+|+.+..-... ...-.+.+|+++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~~id~lv 74 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-------DVDAIVCDNTDPASLEEARGLFPHHLDTIV 74 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-------cCcEEecCCCCHHHHHHHHHHHhhcCcEEE
Confidence 4677777554 3333333334458999999887665543332 24567889876432111 111113588887
Q ss_pred Eccchhh--------cc-CCHHHHH-----------HHHHHHHhcccCCcEEEEEe
Q 018352 111 CFQHLQM--------CF-ETEERAR-----------RLLQNVSSLLKPGGYFLGIT 146 (357)
Q Consensus 111 ~~~~lh~--------~f-es~~~~~-----------~~L~~i~~~LkpGG~fi~t~ 146 (357)
.+.+..+ .+ ++.++.+ .+++.+...|+.+|.++.+.
T Consensus 75 ~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~is 130 (223)
T PRK05884 75 NVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVV 130 (223)
T ss_pred ECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 6543211 01 1222222 24455556667788877663
No 477
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=47.37 E-value=2e+02 Score=27.05 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=54.6
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhhcCCcc
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~F 106 (357)
..++.+||=.|||. |..+..+++. ...++++++-+++..+.+++ +.. + .++... ....+...+....+.+
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~-----~-~v~~~~-~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGA-----D-LTINSK-RVEDVAKIIQEKTGGA 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCC-----c-EEeccc-ccccHHHHHHHhcCCC
Confidence 45778999999652 3344555554 35589999999988888743 211 1 111111 0011222222112357
Q ss_pred cE-EEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 107 DL-VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 107 Dl-V~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
|+ +.+.. +. ..+..+.+.|+++|.++..
T Consensus 232 d~vi~~~~-------~~----~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 232 HAAVVTAV-------AK----AAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred cEEEEeCC-------CH----HHHHHHHHhccCCCEEEEE
Confidence 74 43321 11 2467778899999999865
No 478
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=47.23 E-value=1.5e+02 Score=26.85 Aligned_cols=83 Identities=10% Similarity=0.002 Sum_probs=50.3
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
.+.+||=.|+..| ..+.+.+.....+|+++|-+++.++...+.++.. ..++.++.+|+.+..-.. ......+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 3568998886443 2222222223448999999988877666665543 225778899987743211 1112235
Q ss_pred cccEEEEccch
Q 018352 105 QADLVCCFQHL 115 (357)
Q Consensus 105 ~FDlV~~~~~l 115 (357)
..|+|+...+.
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 68998876653
No 479
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=47.22 E-value=1.3e+02 Score=27.17 Aligned_cols=82 Identities=13% Similarity=0.007 Sum_probs=49.6
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~~ 105 (357)
+.+||=.|+..| ..+...+.....+|++++-++..++.+.+.++... .++.++.+|+.+..-... .....+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 467887777443 22222223334489999999988877777665432 257789999877442211 1112356
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
.|+|+...+.
T Consensus 85 ~d~vi~~ag~ 94 (262)
T PRK13394 85 VDILVSNAGI 94 (262)
T ss_pred CCEEEECCcc
Confidence 8988776543
No 480
>PRK06153 hypothetical protein; Provisional
Probab=46.22 E-value=1.4e+02 Score=30.08 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=24.1
Q ss_pred CCEEEEECCC-CChhH-HHHHHhcCCeEEEEeCC
Q 018352 32 YVTVCDLYCG-AGVDV-DKWETALIANYIGIDVA 63 (357)
Q Consensus 32 ~~~VLDlGCG-~G~~l-~k~~~~~~~~v~GiDiS 63 (357)
+.+|+=+||| +|+.+ ..+++.+.++++.+|.+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 5799999998 46544 44555688999999965
No 481
>PRK05875 short chain dehydrogenase; Provisional
Probab=46.18 E-value=1.5e+02 Score=27.05 Aligned_cols=83 Identities=14% Similarity=-0.016 Sum_probs=48.5
Q ss_pred CCEEEEECCCC--ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh-h---hhcCCc
Q 018352 32 YVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~--G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~-l---~~~~~~ 105 (357)
+.+||=.|++. |..+.+.+.....+|++++-+++.++...+.........++.++.+|+.+..-... + ....+.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGR 86 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 56889888753 44444444444448999998877666554444322111257888999876432111 1 111346
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
.|+|+...+
T Consensus 87 ~d~li~~ag 95 (276)
T PRK05875 87 LHGVVHCAG 95 (276)
T ss_pred CCEEEECCC
Confidence 899887654
No 482
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.14 E-value=2.2e+02 Score=25.45 Aligned_cols=81 Identities=11% Similarity=-0.050 Sum_probs=47.6
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.+||=.|...| ..+.+.+.....++++++-++...+......+.. ..++.++.+|+.+..-.. .+....+.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 457887775433 2333333334458999999988777665555432 225778899987643211 11112356
Q ss_pred ccEEEEccc
Q 018352 106 ADLVCCFQH 114 (357)
Q Consensus 106 FDlV~~~~~ 114 (357)
.|+|++..+
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 899887654
No 483
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=46.14 E-value=1.9e+02 Score=27.66 Aligned_cols=98 Identities=11% Similarity=-0.018 Sum_probs=51.9
Q ss_pred CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHH--hHhcCCCceeEEEEcCCCCCchhhhhhhcCCcccEE
Q 018352 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDT--WENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r--~~~~~~~~~v~f~~~D~~~~~~~~~l~~~~~~FDlV 109 (357)
++|+=+|||. |+.+...+......|+.++-+.+.++.-++. +.-........+ ....... .....||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~-~~~~~~~-------~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLY-AIPAETA-------DAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceee-ccCCCCc-------ccccccCEE
Confidence 5799999995 5544444444335899999987655544321 100000000001 1111000 023579998
Q ss_pred EEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 110 ~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+..- .+ -+...+++.+...+.++..++..
T Consensus 75 iv~v------K~-~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 75 LLAC------KA-YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred EEEC------CH-HhHHHHHHHHHhhCCCCCEEEEE
Confidence 7532 11 13556788889999998865544
No 484
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=46.11 E-value=1.8e+02 Score=27.71 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=54.7
Q ss_pred CCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhhhhh-cCCccc
Q 018352 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (357)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~l~~-~~~~FD 107 (357)
++.+||-.|||. |..+..+++. +..++++++.+++..+.+++ +. +.. ..|.....+...+.. ..+.+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g-------~~~-~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-AG-------ADV-VVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hC-------CcE-EecCCCccHHHHHHHHhCCCCc
Confidence 577898888753 3344455555 44589999999887776643 21 111 112122222221111 122689
Q ss_pred EEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEEEE
Q 018352 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi~t 145 (357)
+|+.... .. ..+..+.+.|+++|+++..
T Consensus 246 ~vid~~g------~~----~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 246 AVIDFVN------NS----ATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEEECCC------CH----HHHHHHHHHhhcCCeEEEE
Confidence 9875431 11 2367778899999999865
No 485
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=46.08 E-value=27 Score=37.82 Aligned_cols=95 Identities=20% Similarity=0.111 Sum_probs=61.2
Q ss_pred CEEEEECCCC-ChhH-HHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------CC-C--------ceeEEEEcCCCCCc
Q 018352 33 VTVCDLYCGA-GVDV-DKWETALIANYIGIDVATSGIGEARDTWENQ-------RK-N--------FIAEFFEADPCAEN 94 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l-~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~~-~--------~~v~f~~~D~~~~~ 94 (357)
.+|.=||+|+ |.-+ ..++......|+.+|++++.++.+..+.+.. +. . .++.+. .|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~----- 383 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD----- 383 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC-----
Confidence 5789999997 4333 3333243459999999999999987766431 00 0 011111 11
Q ss_pred hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
+ . .-...|+|+=. .+|+.+-.+++++++.+.++|+.+|.
T Consensus 384 ~----~-~~~~aDlViEa-----v~E~~~~K~~v~~~le~~~~~~~ila 422 (708)
T PRK11154 384 Y----R-GFKHADVVIEA-----VFEDLALKQQMVAEVEQNCAPHTIFA 422 (708)
T ss_pred h----H-HhccCCEEeec-----ccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 0 12457776533 47888989999999999999996665
No 486
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=45.80 E-value=39 Score=31.41 Aligned_cols=65 Identities=15% Similarity=-0.010 Sum_probs=46.8
Q ss_pred CCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh
Q 018352 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (357)
Q Consensus 31 ~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~ 97 (357)
.+.-|.+||-|.||.+..+..++.+++..++++...+.-.+-..+... .+...+..|+....+.+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~I~~ 114 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFKIEK 114 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceehHHh
Confidence 356899999999999999999988899999988776654443333221 24566777877655543
No 487
>PRK05876 short chain dehydrogenase; Provisional
Probab=45.78 E-value=1.9e+02 Score=26.78 Aligned_cols=82 Identities=13% Similarity=-0.020 Sum_probs=50.0
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.++|=.|++.| ..+.+.+.....+|+.+|.+...++.+.+..+.. ..++.++.+|+.+..-.. ......+.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 457888887765 2222222334458999999988877666555433 235788899997743211 11112356
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
.|+++.+.+.
T Consensus 84 id~li~nAg~ 93 (275)
T PRK05876 84 VDVVFSNAGI 93 (275)
T ss_pred CCEEEECCCc
Confidence 8998876653
No 488
>PRK07478 short chain dehydrogenase; Provisional
Probab=45.58 E-value=2e+02 Score=25.90 Aligned_cols=82 Identities=10% Similarity=-0.097 Sum_probs=50.7
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
+.++|=.|++.| ..+.+.+.....+++.++-+++.++.+.+..+... .++.++.+|+.+..-.. .+....+.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 457888887765 23333333334489999999888877766655432 25778899987643211 11112357
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
.|+++.+.+.
T Consensus 84 id~li~~ag~ 93 (254)
T PRK07478 84 LDIAFNNAGT 93 (254)
T ss_pred CCEEEECCCC
Confidence 8998876654
No 489
>PRK07814 short chain dehydrogenase; Provisional
Probab=45.56 E-value=1.6e+02 Score=26.93 Aligned_cols=82 Identities=13% Similarity=-0.013 Sum_probs=49.7
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~ 104 (357)
++.+||=.|++.| ..+.+++.....+|++++.+++.++...+..+... .++.++.+|+.+..-... ....-+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678898886554 23333333344599999999887776655554322 257788999877442111 111125
Q ss_pred cccEEEEccc
Q 018352 105 QADLVCCFQH 114 (357)
Q Consensus 105 ~FDlV~~~~~ 114 (357)
.+|+|+...+
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 7899887654
No 490
>PRK14851 hypothetical protein; Provisional
Probab=45.45 E-value=1.9e+02 Score=31.23 Aligned_cols=78 Identities=14% Similarity=-0.028 Sum_probs=46.9
Q ss_pred CCCEEEEECCC-CChhH-HHHHHhcCCeEEEEeCChHHH-------------------HHHHHHhHhcCCCceeEEEEcC
Q 018352 31 PYVTVCDLYCG-AGVDV-DKWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (357)
Q Consensus 31 ~~~~VLDlGCG-~G~~l-~k~~~~~~~~v~GiDiS~~~l-------------------~~A~~r~~~~~~~~~v~f~~~D 89 (357)
.+.+|+=+||| -|+.. ..++..++++++-+|.+.-.+ +.++++....+...+++.+...
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 36899999999 56644 455556889999998533222 2233344433334456666666
Q ss_pred CCCCchhhhhhhcCCcccEEEEc
Q 018352 90 PCAENFETQMQEKANQADLVCCF 112 (357)
Q Consensus 90 ~~~~~~~~~l~~~~~~FDlV~~~ 112 (357)
+...++...+ ..+|+|+..
T Consensus 122 i~~~n~~~~l----~~~DvVid~ 140 (679)
T PRK14851 122 INADNMDAFL----DGVDVVLDG 140 (679)
T ss_pred CChHHHHHHH----hCCCEEEEC
Confidence 6554432222 469998853
No 491
>PRK12742 oxidoreductase; Provisional
Probab=45.38 E-value=2.2e+02 Score=25.19 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=53.6
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeC-ChHHHHHHHHHhHhcCCCceeEEEEcCCCCCch-hhhhhhcCCccc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDV-ATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQMQEKANQAD 107 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDi-S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~-~~~l~~~~~~FD 107 (357)
+.+||=.|++.| ..+.+.+.....+++.++. +++.++..... . .+.++.+|+.+..- ...+. ..+.+|
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~---~----~~~~~~~D~~~~~~~~~~~~-~~~~id 77 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQE---T----GATAVQTDSADRDAVIDVVR-KSGALD 77 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH---h----CCeEEecCCCCHHHHHHHHH-HhCCCc
Confidence 568898887655 2333333333347777655 34433332221 1 34567888865332 11121 235689
Q ss_pred EEEEccchhhc--c--CCHHHHHH-----------HHHHHHhcccCCcEEEEE
Q 018352 108 LVCCFQHLQMC--F--ETEERARR-----------LLQNVSSLLKPGGYFLGI 145 (357)
Q Consensus 108 lV~~~~~lh~~--f--es~~~~~~-----------~L~~i~~~LkpGG~fi~t 145 (357)
+++...+.... . .+.++.+. +++.+...++.+|.++.+
T Consensus 78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 130 (237)
T PRK12742 78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIII 130 (237)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 98876543210 0 12222222 234555666777877765
No 492
>PRK05866 short chain dehydrogenase; Provisional
Probab=45.29 E-value=1.4e+02 Score=28.06 Aligned_cols=82 Identities=7% Similarity=-0.087 Sum_probs=50.2
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhhh----hhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~----l~~~~~~ 105 (357)
+.+||=.|++.| ..+.+.+.....+|+.++-+.+.++...+...... ..+.++.+|+.+...... +....+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467888887655 22222222344589999999888777666554332 256788999876442211 1112357
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
.|+|+.+.+.
T Consensus 118 id~li~~AG~ 127 (293)
T PRK05866 118 VDILINNAGR 127 (293)
T ss_pred CCEEEECCCC
Confidence 8999876543
No 493
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=45.25 E-value=1e+02 Score=33.45 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=60.9
Q ss_pred CEEEEECCCC-ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------CC---------CceeEEEEcCCCCCch
Q 018352 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RK---------NFIAEFFEADPCAENF 95 (357)
Q Consensus 33 ~~VLDlGCG~-G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~~---------~~~v~f~~~D~~~~~~ 95 (357)
.+|.=||+|+ |.-+..+.......|+.+|++++.++.+.++.+.. +. ..++++. .| +
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~-----~ 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LD-----Y 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CC-----H
Confidence 4789999998 43333333333449999999999999888766431 00 0011111 11 1
Q ss_pred hhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 96 ~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
. .-...|+|+=. .+|+.+-.+++++++.++++|+-+|.
T Consensus 388 ----~-~~~~aDlViEa-----v~E~l~~K~~vf~~l~~~~~~~~ila 425 (715)
T PRK11730 388 ----A-GFERVDVVVEA-----VVENPKVKAAVLAEVEQKVREDTILA 425 (715)
T ss_pred ----H-HhcCCCEEEec-----ccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence 0 12457777533 47888889999999999999985553
No 494
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=45.23 E-value=1.5e+02 Score=26.83 Aligned_cols=82 Identities=15% Similarity=0.004 Sum_probs=49.5
Q ss_pred CCCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCC
Q 018352 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (357)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~ 104 (357)
.+.+||=.|+..| ..+.+.+.....+|+.++-+...++...+..... ..++.++.+|+.+..-.. .+....+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4578998986443 2222222333448999999988777666555432 225778999998743221 1111235
Q ss_pred cccEEEEccc
Q 018352 105 QADLVCCFQH 114 (357)
Q Consensus 105 ~FDlV~~~~~ 114 (357)
..|+|+...+
T Consensus 89 ~id~vi~~ag 98 (259)
T PRK08213 89 HVDILVNNAG 98 (259)
T ss_pred CCCEEEECCC
Confidence 6899887654
No 495
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=45.12 E-value=91 Score=32.36 Aligned_cols=94 Identities=20% Similarity=0.105 Sum_probs=57.4
Q ss_pred CEEEEECCCC-Ch-hHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-------CCC---------ceeEEEEcCCCCCc
Q 018352 33 VTVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAEN 94 (357)
Q Consensus 33 ~~VLDlGCG~-G~-~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-------~~~---------~~v~f~~~D~~~~~ 94 (357)
.+|-=||+|+ |. .+..++.++. .|+..|.+++.++.+.++++.. +.. .++.. ..|
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-~~~----- 78 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP-VTD----- 78 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE-eCC-----
Confidence 4688889996 32 3344444454 8999999999999887665431 000 00111 111
Q ss_pred hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcccCCcEEE
Q 018352 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (357)
Q Consensus 95 ~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpGG~fi 143 (357)
+ . .-...|+|+..- +++.+-.+.+++.+...++++-++.
T Consensus 79 ~----~-~l~~aDlVIEav-----~E~~~vK~~vf~~l~~~~~~~~Ila 117 (503)
T TIGR02279 79 L----H-ALADAGLVIEAI-----VENLEVKKALFAQLEELCPADTIIA 117 (503)
T ss_pred H----H-HhCCCCEEEEcC-----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 1 113578887643 6777777888898888887765543
No 496
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=45.04 E-value=2e+02 Score=27.95 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=55.4
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHHh-cCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCC--chhhhhhh-cC
Q 018352 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQE-KA 103 (357)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~k~~~~-~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~--~~~~~l~~-~~ 103 (357)
+.++.+||=+|||. |..+..+++. +..+++++|.+++-++.+++. .. . .++ |.... ++...+.. ..
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga-----~-~~i--~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GA-----T-DCV--NPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC-----C-EEE--cccccchHHHHHHHHHhC
Confidence 35788999998763 3344455555 444799999999988877542 11 1 112 21111 12221111 12
Q ss_pred CcccEEEEccchhhccCCHHHHHHHHHHHHhcccCC-cEEEEE
Q 018352 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (357)
Q Consensus 104 ~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~LkpG-G~fi~t 145 (357)
+.+|+|+-.-+ . ...+....+.|+++ |+++..
T Consensus 255 ~g~d~vid~~g------~----~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 255 GGVDYTFECIG------N----VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCCcEEEECCC------C----hHHHHHHHHhhccCCCeEEEE
Confidence 36999875321 1 12456667789887 988765
No 497
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=44.72 E-value=32 Score=31.61 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEEECCCCChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHh
Q 018352 15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (357)
Q Consensus 15 ~~~nwvks~Li~~~~~~~~~VLDlGCG~G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~ 76 (357)
++..||...+-.. ...+++|.=||.|..+..+.. ....++.-|++...+...+...+.
T Consensus 7 ~l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 7 KLAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHhc
Confidence 4556655433211 678999999999976655533 566899999999988877755443
No 498
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=44.61 E-value=1.7e+02 Score=31.00 Aligned_cols=82 Identities=10% Similarity=-0.113 Sum_probs=46.2
Q ss_pred CCCEEEEECCCC--ChhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhc-----C--CCceeEEEEcCCCCCchhhhhhh
Q 018352 31 PYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----R--KNFIAEFFEADPCAENFETQMQE 101 (357)
Q Consensus 31 ~~~~VLDlGCG~--G~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~-----~--~~~~v~f~~~D~~~~~~~~~l~~ 101 (357)
.+.+||=.|+.. |..+.+.+.....+|++++-+.+.++...+.+... + ...++.++.+|+.+..- +..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es---I~~ 155 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ---IGP 155 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH---HHH
Confidence 456788888642 22222222233458999999887765544333211 0 01257889999976332 111
Q ss_pred cCCcccEEEEccch
Q 018352 102 KANQADLVCCFQHL 115 (357)
Q Consensus 102 ~~~~FDlV~~~~~l 115 (357)
.-+..|+|++..+.
T Consensus 156 aLggiDiVVn~AG~ 169 (576)
T PLN03209 156 ALGNASVVICCIGA 169 (576)
T ss_pred HhcCCCEEEEcccc
Confidence 23568998876543
No 499
>PRK07454 short chain dehydrogenase; Provisional
Probab=44.07 E-value=1.7e+02 Score=26.04 Aligned_cols=82 Identities=6% Similarity=-0.063 Sum_probs=48.3
Q ss_pred CCEEEEECCCCC--hhHHHHHHhcCCeEEEEeCChHHHHHHHHHhHhcCCCceeEEEEcCCCCCchhh----hhhhcCCc
Q 018352 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (357)
Q Consensus 32 ~~~VLDlGCG~G--~~l~k~~~~~~~~v~GiDiS~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~----~l~~~~~~ 105 (357)
..++|=.|+..| ..+.+.+.....+|++++-++..++...+..+.. ..++.++.+|+.+..-.. ......+.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 457888886433 2233333334448999999987766655544432 226788999998744211 11112356
Q ss_pred ccEEEEccch
Q 018352 106 ADLVCCFQHL 115 (357)
Q Consensus 106 FDlV~~~~~l 115 (357)
.|+|+...+.
T Consensus 84 id~lv~~ag~ 93 (241)
T PRK07454 84 PDVLINNAGM 93 (241)
T ss_pred CCEEEECCCc
Confidence 8998876654
No 500
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=44.01 E-value=2.7e+02 Score=25.80 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=49.2
Q ss_pred EEEEECCC-CChhHHHH-HHhcCCeEEEEeCChHHH-------------------HHHHHHhHhcCCCceeEEEEcCCCC
Q 018352 34 TVCDLYCG-AGVDVDKW-ETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEADPCA 92 (357)
Q Consensus 34 ~VLDlGCG-~G~~l~k~-~~~~~~~v~GiDiS~~~l-------------------~~A~~r~~~~~~~~~v~f~~~D~~~ 92 (357)
+||=+||| .|..+.+. +..+.++++.+|.+.-.. +.|.++.++.+...++..+..++..
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 47888998 45555444 445889999999643222 1223333333333355566666532
Q ss_pred Cc-hhhhhhhcCCcccEEEEccchhhccCCHHHHHHHHHHHHhcc
Q 018352 93 EN-FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL 136 (357)
Q Consensus 93 ~~-~~~~l~~~~~~FDlV~~~~~lh~~fes~~~~~~~L~~i~~~L 136 (357)
.. +... --.+||+|++.. .+.+ .+..+.++...+
T Consensus 81 ~~~~~~~---f~~~~DvVi~a~------Dn~~-aR~~ln~~c~~~ 115 (234)
T cd01484 81 EQDFNDT---FFEQFHIIVNAL------DNII-ARRYVNGMLIFL 115 (234)
T ss_pred hhhchHH---HHhCCCEEEECC------CCHH-HHHHHHHHHHHc
Confidence 11 1111 125799998742 2233 455566655544
Done!