Query 018353
Match_columns 357
No_of_seqs 162 out of 752
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 13:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018353.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018353hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o14a2 c.23.10.8 (A:160-367) 97.1 0.00085 6.2E-08 56.4 9.4 91 183-312 71-161 (208)
2 d3dc7a1 c.23.10.9 (A:18-224) U 96.9 0.0013 9.8E-08 54.4 8.3 106 183-314 65-170 (207)
3 d3bzwa1 c.23.10.9 (A:38-285) U 83.2 0.21 1.5E-05 40.2 1.8 15 98-112 7-21 (248)
4 d1pvva2 c.78.1.1 (A:151-313) O 75.6 0.6 4.3E-05 37.4 2.2 24 97-122 2-25 (163)
5 d1otha2 c.78.1.1 (A:185-354) O 71.2 0.77 5.6E-05 36.8 1.9 24 97-122 2-25 (170)
6 d1vjga_ c.23.10.6 (A:) Hypothe 66.3 0.99 7.2E-05 35.5 1.5 24 287-312 139-162 (201)
7 d1yzfa1 c.23.10.5 (A:1-195) Li 62.6 1.1 8.2E-05 35.7 1.2 58 287-354 131-188 (195)
8 d1k7ca_ c.23.10.4 (A:) Rhamnog 56.3 11 0.00082 29.7 6.6 79 221-324 108-201 (233)
9 d1dxha2 c.78.1.1 (A:151-335) O 52.9 3.4 0.00025 33.3 2.6 25 97-122 3-27 (185)
10 d1pg5a2 c.78.1.1 (A:147-299) A 49.9 4.2 0.00031 31.6 2.6 27 97-123 1-27 (153)
11 d1fxwf_ c.23.10.3 (F:) Platele 47.7 3.2 0.00023 33.8 1.6 49 183-253 89-137 (212)
12 d2hsja1 c.23.10.3 (A:1-211) Un 47.6 3.4 0.00025 33.4 1.8 128 184-352 83-210 (211)
13 d1es9a_ c.23.10.3 (A:) Platele 45.6 4.1 0.0003 33.0 2.0 48 184-253 90-137 (212)
14 d2at2a2 c.78.1.1 (A:145-295) A 45.6 5.1 0.00037 31.2 2.5 26 98-123 2-27 (151)
15 d1vlva2 c.78.1.1 (A:153-313) O 45.5 5.7 0.00042 30.9 2.8 25 97-122 1-25 (161)
16 d1k7ca_ c.23.10.4 (A:) Rhamnog 44.7 3.4 0.00025 33.1 1.3 11 101-111 2-12 (233)
17 d1jrla_ c.23.10.5 (A:) Thioest 42.5 4.5 0.00033 31.4 1.7 45 184-250 63-107 (179)
18 d1ekxa2 c.78.1.1 (A:151-310) A 40.8 6.8 0.0005 30.5 2.5 26 97-122 2-27 (160)
19 d1p3da1 c.5.1.1 (A:11-106) UDP 38.1 6.4 0.00047 28.1 1.8 25 98-124 7-31 (96)
20 d1vcca_ d.121.1.1 (A:) Vaccini 38.0 2 0.00014 29.6 -1.1 15 100-114 55-70 (77)
21 d1ml4a2 c.78.1.1 (A:152-308) A 33.8 8.9 0.00065 29.5 2.1 26 97-122 2-27 (157)
22 d1duvg2 c.78.1.1 (G:151-333) O 32.3 12 0.00088 29.6 2.8 25 97-122 3-27 (183)
23 d1gph11 c.61.1.1 (1:235-465) G 29.9 18 0.0013 30.2 3.5 33 94-126 99-132 (231)
24 d2hsja1 c.23.10.3 (A:1-211) Un 28.5 43 0.0032 26.2 5.8 14 99-112 31-44 (211)
25 d1j6ua1 c.5.1.1 (A:0-88) UDP-N 27.8 12 0.00091 26.2 1.9 24 99-124 1-24 (89)
26 d1xrda1 f.3.1.1 (A:1-52) Light 23.4 15 0.0011 23.2 1.4 20 4-23 15-34 (52)
27 d2gmwa1 c.108.1.19 (A:24-205) 23.1 17 0.0012 28.3 2.0 29 82-110 103-136 (182)
28 d1ecfa1 c.61.1.1 (A:250-492) G 22.3 22 0.0016 29.7 2.7 32 95-126 106-138 (243)
No 1
>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=97.14 E-value=0.00085 Score=56.44 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=48.8
Q ss_pred cccEEEEeccccccccCCCCCcceeccCccccccccHHHHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCCCCCC
Q 018353 183 TADVLIFDSWHWWLHTGRKQPWDIIQDMNNTYKDMNRLVAYSKALNTWAKWVNSNVDNSKTKVIFRGISPDHMNSSDWGD 262 (357)
Q Consensus 183 ~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~ayr~al~t~~~~v~~~~~~~~~~Vf~Rt~sP~Hf~~g~W~~ 262 (357)
..|+|||..|.-=... .+ ....+.|+..++++++-+.+ ....+++-+..| ++.. .+..
T Consensus 71 ~~D~vvi~~G~ND~~~----------~~------~~~~~~~~~~l~~li~~~~~----~~~~~vl~~~~~-~~~~-~~~~ 128 (208)
T d2o14a2 71 PGDYFMLQLGINDTNP----------KH------KESEAEFKEVMRDMIRQVKA----KGADVILSTPQG-RATD-FTSE 128 (208)
T ss_dssp TTCEEEEECCTGGGCG----------GG------CCCHHHHHHHHHHHHHHHHT----TTCEEEEECCCC-CTTC-BCTT
T ss_pred CCCEEEEEcCCCcccc----------cc------cccHHHHHHHHHHHHHHHHh----cCCceeeccccc-cccc-cccc
Confidence 4699999998652210 01 11245788888888876643 234455544333 2110 0000
Q ss_pred CCCCCCCCCcccCCCCCCCCCCChHHHHHHHHHHhhCCceEEeecccccc
Q 018353 263 RNAKNCIGETRPVMGRSYPGGRHPAEAIVENVVRKISKKVRLLNVTTLSQ 312 (357)
Q Consensus 263 g~~g~C~~~t~P~~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLDit~ls~ 312 (357)
....+ .....+++++++.++ ..+.++|++.++.
T Consensus 129 -------~~~~~--------~~~~~~~~~~~~a~~--~~v~~vD~~~~~~ 161 (208)
T d2o14a2 129 -------GIHSS--------VNRWYRASILALAEE--EKTYLIDLNVLSS 161 (208)
T ss_dssp -------SCBCC--------TTSTTHHHHHHHHHH--TTCEEECHHHHHH
T ss_pred -------cchHH--------HHHHHHHHHHHhhcc--CCcEEeccHHHHH
Confidence 01000 012346778888777 4588999987764
No 2
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]}
Probab=96.89 E-value=0.0013 Score=54.38 Aligned_cols=106 Identities=11% Similarity=0.015 Sum_probs=49.3
Q ss_pred cccEEEEeccccccccCCCCCcceeccCccccccccHHHHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCCCCCC
Q 018353 183 TADVLIFDSWHWWLHTGRKQPWDIIQDMNNTYKDMNRLVAYSKALNTWAKWVNSNVDNSKTKVIFRGISPDHMNSSDWGD 262 (357)
Q Consensus 183 ~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~ayr~al~t~~~~v~~~~~~~~~~Vf~Rt~sP~Hf~~g~W~~ 262 (357)
.+|+||+..|.-=..... +...+ . .. ....|+.+++.+++.+.+. .+.+++++-+..|..-..+
T Consensus 65 ~~d~Vii~~G~ND~~~~~--~~~~~---~----~~-~~~~~~~~~~~~i~~i~~~--~~~~~ii~~~~~~~~~~~~---- 128 (207)
T d3dc7a1 65 DADFIAVFGGVNDYGRDQ--PLGQY---G----DC-DMTTFYGALMMLLTGLQTN--WPTVPKLFISAIHIGSDFG---- 128 (207)
T ss_dssp TCSEEEEECCHHHHHTTC--CCCCT---T----CC-STTSHHHHHHHHHHHHHHH--CTTSCEEEEECCCCCSCSB----
T ss_pred CCCEEEEccCchhhhccc--Ccccc---c----cc-cHHHHHHHHHHHHHHHHHh--CCceEEEEecCCCCccccc----
Confidence 379999999876321110 00000 0 01 1123455555666655442 3466777766555431110
Q ss_pred CCCCCCCCCcccCCCCCCCCCCChHHHHHHHHHHhhCCceEEeecccccccc
Q 018353 263 RNAKNCIGETRPVMGRSYPGGRHPAEAIVENVVRKISKKVRLLNVTTLSQLR 314 (357)
Q Consensus 263 g~~g~C~~~t~P~~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLDit~ls~~R 314 (357)
.+.+.............++.++++.++ ..+.++|++..+..+
T Consensus 129 --------~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~id~~~~~~~~ 170 (207)
T d3dc7a1 129 --------GSFSAVTNGLGYRQSDYEAAIAQMTAD--YGVPHLSLYRDAGMT 170 (207)
T ss_dssp --------TTBCSSCCTTSCCHHHHHHHHHHHHHH--HTCCEEEHHHHSSCC
T ss_pred --------cchhhhhhhHHHHHHHHHHHHHHHHHh--ceeeeeehhhhhhcc
Confidence 001100001111111235566666666 458889987665533
No 3
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=83.23 E-value=0.21 Score=40.20 Aligned_cols=15 Identities=40% Similarity=0.778 Sum_probs=13.0
Q ss_pred cCCeEEEEechhhHH
Q 018353 98 RGKRILFVGDSISLN 112 (357)
Q Consensus 98 rgk~i~FvGDS~~Rq 112 (357)
.||+|+|+|||++-.
T Consensus 7 ~~kkI~~~GDS~T~g 21 (248)
T d3bzwa1 7 QGKKVGYIGDSITDP 21 (248)
T ss_dssp TTCEEEEEESTTTCT
T ss_pred CCCEEEEEehHHccC
Confidence 589999999999853
No 4
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=75.62 E-value=0.6 Score=37.38 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred HcCCeEEEEechhhHHHHHHHHHhhh
Q 018353 97 FRGKRILFVGDSISLNQWQSLTCMLH 122 (357)
Q Consensus 97 lrgk~i~FvGDS~~Rq~~~SL~clL~ 122 (357)
|.|++|+|||| .+|...||+-+|.
T Consensus 2 l~gl~Ia~VGD--~~nv~~Sli~~l~ 25 (163)
T d1pvva2 2 IKGVKVVYVGD--GNNVAHSLMIAGT 25 (163)
T ss_dssp CTTCEEEEESC--CCHHHHHHHHHHH
T ss_pred cCCCEEEEECC--CcHHHHHHHHHHH
Confidence 67999999999 5788899998884
No 5
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.21 E-value=0.77 Score=36.75 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.3
Q ss_pred HcCCeEEEEechhhHHHHHHHHHhhh
Q 018353 97 FRGKRILFVGDSISLNQWQSLTCMLH 122 (357)
Q Consensus 97 lrgk~i~FvGDS~~Rq~~~SL~clL~ 122 (357)
|.|++|+|||| .+|...||+-++.
T Consensus 2 l~gl~I~~vGD--~~nV~~Sli~~~~ 25 (170)
T d1otha2 2 LKGLTLSWIGD--GNNILHSIMMSAA 25 (170)
T ss_dssp CTTCEEEEESC--SSHHHHHHHTTTG
T ss_pred CCCCEEEEEcC--chhHHHHHHHHHH
Confidence 68999999999 3678899988774
No 6
>d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp. pcc 7120 [TaxId: 103690]}
Probab=66.28 E-value=0.99 Score=35.53 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhCCceEEeecccccc
Q 018353 287 AEAIVENVVRKISKKVRLLNVTTLSQ 312 (357)
Q Consensus 287 ~~~i~~~~~~~~~~~v~lLDit~ls~ 312 (357)
.++.++++.++. .+.++|+..+..
T Consensus 139 ~~~~~~~~a~~~--~~~~~d~~~~~~ 162 (201)
T d1vjga_ 139 LSQQLALVCQDL--DVPYLDVFPLLE 162 (201)
T ss_dssp HHHHHHHHHHHH--TCCEECCTGGGS
T ss_pred HHHHHHHHHHhc--CcceechHHHHh
Confidence 355667766663 478888876543
No 7
>d1yzfa1 c.23.10.5 (A:1-195) Lipase/acylhydrolase {Enterococcus faecalis [TaxId: 1351]}
Probab=62.55 E-value=1.1 Score=35.68 Aligned_cols=58 Identities=9% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhCCceEEeecccccccccCCCCCCCCCCCCCCCCeeeecCCChhhHHHHHHHHHhCC
Q 018353 287 AEAIVENVVRKISKKVRLLNVTTLSQLRKDGHPSAYGYGGPRATDCSHWCLPGVPDTWNQLLYAVLFP 354 (357)
Q Consensus 287 ~~~i~~~~~~~~~~~v~lLDit~ls~~R~D~Hp~~y~~~~~~~~DC~HwClPGv~D~Wn~lL~~~L~~ 354 (357)
.++.++++.++ .++.++|++......++- +. + ...|.+|.=--| ...|-+.++..|..
T Consensus 131 ~~~~~~~~a~~--~~v~~vd~~~~~~~~~~~-~~-~-----~~~DgiHpn~~G-~~~~A~~i~~~i~~ 188 (195)
T d1yzfa1 131 LVKVAQEVGAA--HNLPVIDLYKAMTVYPGT-DE-F-----LQADGLHFSQVG-YELLGALIVREIKG 188 (195)
T ss_dssp HHHHHHHHHHH--TTCCEECHHHHHHHSTTG-GG-G-----BCTTSSSBCHHH-HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHh--hCCeEeehHHHHhccCCC-hh-h-----cCCCCCCCCHHH-HHHHHHHHHHHHHH
Confidence 35566666666 468999998765422211 11 1 124666655544 46666666666643
No 8
>d1k7ca_ c.23.10.4 (A:) Rhamnogalacturonan acetylesterase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}
Probab=56.31 E-value=11 Score=29.68 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCChHHHHHHHHHHhhCC
Q 018353 221 VAYSKALNTWAKWVNSNVDNSKTKVIFRGISPDHMNSSDWGDRNAKNCIGETRPVMGRSYPGGRHPAEAIVENVVRKISK 300 (357)
Q Consensus 221 ~ayr~al~t~~~~v~~~~~~~~~~Vf~Rt~sP~Hf~~g~W~~g~~g~C~~~t~P~~~~~~~~~~~~~~~i~~~~~~~~~~ 300 (357)
..|+..|+++++.+.+ ....+++-+..|.-.. ..+ .+.......++.++++.++.
T Consensus 108 ~~~~~~l~~~i~~~~~----~~~~~i~~~~~~~~~~----~~~---------------~~~~~~~~~~~~~~~~a~~~-- 162 (233)
T d1k7ca_ 108 LTFPAYLENAAKLFTA----KGAKVILSSQTPNNPW----ETG---------------TFVNSPTRFVEYAELAAEVA-- 162 (233)
T ss_dssp EBHHHHHHHHHHHHHH----TTCEEEEECCCCCCTT----TTS---------------SCCCCCCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHh----cCCEEEEEecCccccc----ccc---------------chhhhHHHHHHHHHHHHHHc--
Confidence 4566777777665433 3456777665554311 100 11111124567788877764
Q ss_pred ceEEeecccccc--------------cccCC-CCCCCCC
Q 018353 301 KVRLLNVTTLSQ--------------LRKDG-HPSAYGY 324 (357)
Q Consensus 301 ~v~lLDit~ls~--------------~R~D~-Hp~~y~~ 324 (357)
.+.++|++.++. +.+|+ ||...++
T Consensus 163 ~v~~iDl~~~~~~~~~~~~~~~~~~~~~~DgiHpn~~G~ 201 (233)
T d1k7ca_ 163 GVEYVDHWSYVDSIYETLGNATVNSYFPIDHTHTSPAGA 201 (233)
T ss_dssp TCEEECHHHHHHHHHHHHCHHHHHHTCSSSSSCCCHHHH
T ss_pred CCCeeeHHHHHHHHHHHcCchhhhhhcCCCCcCCCHHHH
Confidence 488999887653 44686 9997664
No 9
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=52.93 E-value=3.4 Score=33.33 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.3
Q ss_pred HcCCeEEEEechhhHHHHHHHHHhhh
Q 018353 97 FRGKRILFVGDSISLNQWQSLTCMLH 122 (357)
Q Consensus 97 lrgk~i~FvGDS~~Rq~~~SL~clL~ 122 (357)
|.|.+|+||||..+ |...||+.++.
T Consensus 3 l~~lkia~vGD~~n-nV~~Sli~~~~ 27 (185)
T d1dxha2 3 LHDISYAYLGDARN-NMGNSLLLIGA 27 (185)
T ss_dssp GGGCEEEEESCCSS-HHHHHHHHHHH
T ss_pred CCCCEEEEEcCCcc-hHHHHHHHHHH
Confidence 67899999999756 58999998885
No 10
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=49.88 E-value=4.2 Score=31.61 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=21.3
Q ss_pred HcCCeEEEEechhhHHHHHHHHHhhhc
Q 018353 97 FRGKRILFVGDSISLNQWQSLTCMLHL 123 (357)
Q Consensus 97 lrgk~i~FvGDS~~Rq~~~SL~clL~~ 123 (357)
|.|++|+||||...-+-..||+-+|..
T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~ 27 (153)
T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTR 27 (153)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHH
Confidence 469999999997754468888888853
No 11
>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha2 [TaxId: 9913]}
Probab=47.66 E-value=3.2 Score=33.79 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=29.4
Q ss_pred cccEEEEeccccccccCCCCCcceeccCccccccccHHHHHHHHHHHHHHHHHhccCCCCceEEEEecCCC
Q 018353 183 TADVLIFDSWHWWLHTGRKQPWDIIQDMNNTYKDMNRLVAYSKALNTWAKWVNSNVDNSKTKVIFRGISPD 253 (357)
Q Consensus 183 ~~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~ayr~al~t~~~~v~~~~~~~~~~Vf~Rt~sP~ 253 (357)
.+|+|||..|.==. +. -.+.+...++.+++.+.+. .++++|++-+..|.
T Consensus 89 ~P~~vvi~~G~ND~-------------~~-------~~~~~~~~~~~~i~~i~~~--~p~~~Ii~~~~~P~ 137 (212)
T d1fxwf_ 89 KPKVIVVWVGTNNH-------------EN-------TAEEVAGGIEAIVQLINTR--QPQAKIIVLGLLPR 137 (212)
T ss_dssp CCSEEEEECCTTCT-------------TS-------CHHHHHHHHHHHHHHHHHH--CTTCEEEEECCCCC
T ss_pred CCCEEEEEeccccc-------------cc-------ccHHHHHHHHHHHHHHHHH--hccccccceeeccc
Confidence 37999998875421 00 0223445566666655442 35778998888774
No 12
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=47.61 E-value=3.4 Score=33.37 Aligned_cols=128 Identities=13% Similarity=0.032 Sum_probs=61.0
Q ss_pred ccEEEEeccccccccCCCCCcceeccCccccccccHHHHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCCCCCCC
Q 018353 184 ADVLIFDSWHWWLHTGRKQPWDIIQDMNNTYKDMNRLVAYSKALNTWAKWVNSNVDNSKTKVIFRGISPDHMNSSDWGDR 263 (357)
Q Consensus 184 ~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~ayr~al~t~~~~v~~~~~~~~~~Vf~Rt~sP~Hf~~g~W~~g 263 (357)
+|+|||..|.-=... + .. .+.+...++.+++-+.+ ..+.+.|++-+..|.-..
T Consensus 83 pd~vii~~G~ND~~~-----------~------~~-~~~~~~~~~~li~~i~~--~~p~~~i~v~~~~P~~~~------- 135 (211)
T d2hsja1 83 VDKIFLLIGTNDIGK-----------D------VP-VNEALNNLEAIIQSVAR--DYPLTEIKLLSILPVNER------- 135 (211)
T ss_dssp CCEEEEECCHHHHHT-----------T------CC-HHHHHHHHHHHHHHHHH--HCTTCEEEEECCCCCCCS-------
T ss_pred CCEEEEEeCcchhcc-----------C------cc-hHHHHHhhhhhhhhhcc--ccccceEEEeeecCCCcc-------
Confidence 799999888652211 1 11 22344555555554443 235778999888876521
Q ss_pred CCCCCCCCcccCCCCCCCCCCChHHHHHHHHHHhhCCceEEeecccccccccCCCCCCCCCCCCCCCCeeeecCCChhhH
Q 018353 264 NAKNCIGETRPVMGRSYPGGRHPAEAIVENVVRKISKKVRLLNVTTLSQLRKDGHPSAYGYGGPRATDCSHWCLPGVPDT 343 (357)
Q Consensus 264 ~~g~C~~~t~P~~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLDit~ls~~R~D~Hp~~y~~~~~~~~DC~HwClPGv~D~ 343 (357)
+ ....+.. ..........++.++++.++ ...+.++|++....- .++.+... ...|-+|-=--| ...
T Consensus 136 ----~-~~~~~~~-~~~~~~i~~~n~~~~~~a~~-~~~v~~iD~~~~~~~-~~g~~~~~-----~~~DglHpn~~G-y~~ 201 (211)
T d2hsja1 136 ----E-EYQQAVY-IRSNEKIQNWNQAYQELASA-YMQVEFVPVFDCLTD-QAGQLKKE-----YTTDGLHLSIAG-YQA 201 (211)
T ss_dssp ----G-GGHHHHT-TCCHHHHHHHHHHHHHHHTT-CTTEEEECCGGGSBC-TTSSBCGG-----GBSSSSSBCHHH-HHH
T ss_pred ----c-ccchhhh-hhHHHHHHHHHHHHHHHHHh-hCCeeEeehhHHHhc-ccCCCchh-----hCCCCCCcCHHH-HHH
Confidence 1 0000000 00000001123445544433 246999999876532 22222111 113666644433 356
Q ss_pred HHHHHHHHh
Q 018353 344 WNQLLYAVL 352 (357)
Q Consensus 344 Wn~lL~~~L 352 (357)
|-+.|...|
T Consensus 202 ~a~~i~~~L 210 (211)
T d2hsja1 202 LSKSLKDYL 210 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666665
No 13
>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha1 [TaxId: 9913]}
Probab=45.64 E-value=4.1 Score=33.03 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=28.1
Q ss_pred ccEEEEeccccccccCCCCCcceeccCccccccccHHHHHHHHHHHHHHHHHhccCCCCceEEEEecCCC
Q 018353 184 ADVLIFDSWHWWLHTGRKQPWDIIQDMNNTYKDMNRLVAYSKALNTWAKWVNSNVDNSKTKVIFRGISPD 253 (357)
Q Consensus 184 ~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~ayr~al~t~~~~v~~~~~~~~~~Vf~Rt~sP~ 253 (357)
+|+||+..|.==. +. ..+.+...++++++.+.+ ..+.++|++-+..|.
T Consensus 90 pd~vvi~~G~ND~-------------~~-------~~~~~~~~~~~ii~~l~~--~~p~~~Ii~~~~~p~ 137 (212)
T d1es9a_ 90 PKIVVVWVGTNNH-------------GH-------TAEQVTGGIKAIVQLVNE--RQPQARVVVLGLLPR 137 (212)
T ss_dssp CSEEEEECCTTCT-------------TS-------CHHHHHHHHHHHHHHHHH--HSTTCEEEEECCCCC
T ss_pred CCEEEEecccccc-------------CC-------CHHHHHHHHHHHHHHHHH--hhccccccceeeeec
Confidence 7999998875411 00 023344556666665543 235778888887763
No 14
>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}
Probab=45.63 E-value=5.1 Score=31.22 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=21.4
Q ss_pred cCCeEEEEechhhHHHHHHHHHhhhc
Q 018353 98 RGKRILFVGDSISLNQWQSLTCMLHL 123 (357)
Q Consensus 98 rgk~i~FvGDS~~Rq~~~SL~clL~~ 123 (357)
.|.+|+||||...-+...||+-++..
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~ 27 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTR 27 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999998766678888888754
No 15
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}
Probab=45.49 E-value=5.7 Score=30.94 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.0
Q ss_pred HcCCeEEEEechhhHHHHHHHHHhhh
Q 018353 97 FRGKRILFVGDSISLNQWQSLTCMLH 122 (357)
Q Consensus 97 lrgk~i~FvGDS~~Rq~~~SL~clL~ 122 (357)
|+|++|+||||=.+ |...|++-++.
T Consensus 1 l~g~ki~~vGD~~n-nV~~Sli~~~~ 25 (161)
T d1vlva2 1 LKGVKVVFMGDTRN-NVATSLMIACA 25 (161)
T ss_dssp STTCEEEEESCTTS-HHHHHHHHHHH
T ss_pred CCCCEEEEEcCCcc-HHHHHHHHHHH
Confidence 58999999999324 58889988774
No 16
>d1k7ca_ c.23.10.4 (A:) Rhamnogalacturonan acetylesterase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}
Probab=44.71 E-value=3.4 Score=33.11 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=9.5
Q ss_pred eEEEEechhhH
Q 018353 101 RILFVGDSISL 111 (357)
Q Consensus 101 ~i~FvGDS~~R 111 (357)
+|+|+|||++-
T Consensus 2 ti~~~GDS~~~ 12 (233)
T d1k7ca_ 2 TVYLAGDSTMA 12 (233)
T ss_dssp EEEEECCTTTS
T ss_pred EEEEEehhhcc
Confidence 79999999863
No 17
>d1jrla_ c.23.10.5 (A:) Thioesterase I, TAP {Escherichia coli [TaxId: 562]}
Probab=42.52 E-value=4.5 Score=31.40 Aligned_cols=45 Identities=7% Similarity=-0.085 Sum_probs=26.3
Q ss_pred ccEEEEeccccccccCCCCCcceeccCccccccccHHHHHHHHHHHHHHHHHhccCCCCceEEEEec
Q 018353 184 ADVLIFDSWHWWLHTGRKQPWDIIQDMNNTYKDMNRLVAYSKALNTWAKWVNSNVDNSKTKVIFRGI 250 (357)
Q Consensus 184 ~DvlV~ntG~W~~~~~~~~~~~~~~~g~~~~~~~~~~~ayr~al~t~~~~v~~~~~~~~~~Vf~Rt~ 250 (357)
+|+||+..|.-=... + .. ...+++.++.+++.+.+ ...+|++-+.
T Consensus 63 pd~vii~~G~ND~~~-----------~------~~-~~~~~~~~~~~i~~~~~----~~~~vil~~~ 107 (179)
T d1jrla_ 63 PRWVLVELGGNDGLR-----------G------FQ-PQQTEQTLRQILQDVKA----ANAEPLLMQI 107 (179)
T ss_dssp CSEEEEECCTTTTTT-----------T------CC-HHHHHHHHHHHHHHHHH----TTCEEEEECC
T ss_pred CcEEEEEEecccccc-----------c------cc-hhhhhhhHHHHHHHHHh----ccCcEEEEec
Confidence 699999998743211 1 11 34666667766665543 3456666554
No 18
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}
Probab=40.77 E-value=6.8 Score=30.46 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=19.8
Q ss_pred HcCCeEEEEechhhHHHHHHHHHhhh
Q 018353 97 FRGKRILFVGDSISLNQWQSLTCMLH 122 (357)
Q Consensus 97 lrgk~i~FvGDS~~Rq~~~SL~clL~ 122 (357)
+.|.+|+||||...-+-..||+-+|.
T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~ 27 (160)
T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALA 27 (160)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHH
Confidence 57999999999875445677777664
No 19
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=38.08 E-value=6.4 Score=28.14 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=19.7
Q ss_pred cCCeEEEEechhhHHHHHHHHHhhhcc
Q 018353 98 RGKRILFVGDSISLNQWQSLTCMLHLA 124 (357)
Q Consensus 98 rgk~i~FvGDS~~Rq~~~SL~clL~~~ 124 (357)
+.|++.||| +..-=+.+|.++|...
T Consensus 7 ~~~~ihfiG--igG~GMs~LA~~L~~~ 31 (96)
T d1p3da1 7 RVQQIHFIG--IGGAGMSGIAEILLNE 31 (96)
T ss_dssp TCCEEEEET--TTSTTHHHHHHHHHHH
T ss_pred hCCEEEEEE--ECHHHHHHHHHHHHhC
Confidence 578999998 6666678888888654
No 20
>d1vcca_ d.121.1.1 (A:) Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment {Vaccinia virus, strain WR [TaxId: 10245]}
Probab=38.01 E-value=2 Score=29.60 Aligned_cols=15 Identities=47% Similarity=0.833 Sum_probs=12.1
Q ss_pred CeEEEEe-chhhHHHH
Q 018353 100 KRILFVG-DSISLNQW 114 (357)
Q Consensus 100 k~i~FvG-DS~~Rq~~ 114 (357)
.+++||| ||-+|.||
T Consensus 55 ~~LIfvG~DSKgrkQY 70 (77)
T d1vcca_ 55 TRLIFVGSDSKGRRQY 70 (77)
T ss_dssp TSEEEEEECTTSCEEE
T ss_pred CceEEEeecCCCceEE
Confidence 4589999 88888775
No 21
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=33.83 E-value=8.9 Score=29.51 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=19.7
Q ss_pred HcCCeEEEEechhhHHHHHHHHHhhh
Q 018353 97 FRGKRILFVGDSISLNQWQSLTCMLH 122 (357)
Q Consensus 97 lrgk~i~FvGDS~~Rq~~~SL~clL~ 122 (357)
|.|++|+||||=.--+-..||+.++.
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~ 27 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALT 27 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGG
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHH
Confidence 57999999999653344678888774
No 22
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}
Probab=32.34 E-value=12 Score=29.63 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=19.8
Q ss_pred HcCCeEEEEechhhHHHHHHHHHhhh
Q 018353 97 FRGKRILFVGDSISLNQWQSLTCMLH 122 (357)
Q Consensus 97 lrgk~i~FvGDS~~Rq~~~SL~clL~ 122 (357)
|.|-+|+||||.-+ |...||+-++.
T Consensus 3 ~~~l~i~~vGD~~n-nv~~Sli~~~~ 27 (183)
T d1duvg2 3 FNEMTLVYAGDARN-NMGNSMLEAAA 27 (183)
T ss_dssp GGGCEEEEESCTTS-HHHHHHHHHHH
T ss_pred cCCCEEEEEcCCcc-HHHHHHHHHHH
Confidence 56889999999645 57888887774
No 23
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=29.86 E-value=18 Score=30.24 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=25.6
Q ss_pred HHHHcCCeEEEEechhhHH-HHHHHHHhhhccCC
Q 018353 94 LERFRGKRILFVGDSISLN-QWQSLTCMLHLAVP 126 (357)
Q Consensus 94 l~~lrgk~i~FvGDS~~Rq-~~~SL~clL~~~~~ 126 (357)
-+.++||+|++|=||+-|. ....++.+|..+.+
T Consensus 99 ~~~i~gK~vvlVDDSIVRGtT~k~iv~~lr~aGa 132 (231)
T d1gph11 99 RGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGA 132 (231)
T ss_dssp HHHHTTCEEEEEESCCSSSHHHHHHHHHHHHTTC
T ss_pred hheeccCceEEeehhhhccchHHHHHHHHHHcCC
Confidence 3568999999999999985 45578888875443
No 24
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=28.50 E-value=43 Score=26.15 Aligned_cols=14 Identities=50% Similarity=0.698 Sum_probs=11.8
Q ss_pred CCeEEEEechhhHH
Q 018353 99 GKRILFVGDSISLN 112 (357)
Q Consensus 99 gk~i~FvGDS~~Rq 112 (357)
...|+|+|||++..
T Consensus 31 ~~~ivf~GDSit~~ 44 (211)
T d2hsja1 31 EPNILFIGDSIVEY 44 (211)
T ss_dssp CCSEEEEESHHHHT
T ss_pred CCCEEEEECHHHcC
Confidence 45799999999964
No 25
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=27.83 E-value=12 Score=26.20 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=18.6
Q ss_pred CCeEEEEechhhHHHHHHHHHhhhcc
Q 018353 99 GKRILFVGDSISLNQWQSLTCMLHLA 124 (357)
Q Consensus 99 gk~i~FvGDS~~Rq~~~SL~clL~~~ 124 (357)
+.||.||| +.--=+.+|.++|...
T Consensus 1 ~~~ihfiG--IgG~GMs~LA~~L~~~ 24 (89)
T d1j6ua1 1 HMKIHFVG--IGGIGMSAVALHEFSN 24 (89)
T ss_dssp CCEEEEET--TTSHHHHHHHHHHHHT
T ss_pred CcEEEEEe--ECHHHHHHHHHHHHhC
Confidence 45789998 7777788898888653
No 26
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=23.37 E-value=15 Score=23.17 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHhhhccccc
Q 018353 4 VALAGTLLVVALFLHRGVYG 23 (357)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (357)
|++..+|+++++.+|+..++
T Consensus 15 va~~~fL~~LAl~IHfiLLS 34 (52)
T d1xrda1 15 VGLATFLFVLALLIHFILLS 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 67888899999999888776
No 27
>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}
Probab=23.14 E-value=17 Score=28.29 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=19.7
Q ss_pred CCCCCCCChHHHHHHHc-----CCeEEEEechhh
Q 018353 82 SCKLPRFRGGVFLERFR-----GKRILFVGDSIS 110 (357)
Q Consensus 82 ~C~l~~fd~~~fl~~lr-----gk~i~FvGDS~~ 110 (357)
.|..++-+|.-+++.++ -+..+|||||..
T Consensus 103 ~~~~rKP~p~m~~~~~~~~~i~~~~s~mVGDs~~ 136 (182)
T d2gmwa1 103 VCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLE 136 (182)
T ss_dssp CCSSSTTSCHHHHHHHHHHTBCGGGCEEEESSHH
T ss_pred cccccCCccccccchhhhcccccccccccCCCHH
Confidence 45556666776666653 456899999863
No 28
>d1ecfa1 c.61.1.1 (A:250-492) Glutamine PRPP amidotransferase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.25 E-value=22 Score=29.74 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=25.7
Q ss_pred HHHcCCeEEEEechhhHH-HHHHHHHhhhccCC
Q 018353 95 ERFRGKRILFVGDSISLN-QWQSLTCMLHLAVP 126 (357)
Q Consensus 95 ~~lrgk~i~FvGDS~~Rq-~~~SL~clL~~~~~ 126 (357)
..++||+|++|=||+-|. ....++.+|..+.+
T Consensus 106 ~~i~gk~vvlVDDSIVRGtT~k~iv~~L~~~ga 138 (243)
T d1ecfa1 106 AEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGA 138 (243)
T ss_dssp GGTTTCCEEEEESCCSSSHHHHHHHHHHHHTTC
T ss_pred heeccceEEEEhhHHHhhhhHHHHHHHHHHcCC
Confidence 457999999999999985 45678888886544
Done!