Query 018354
Match_columns 357
No_of_seqs 118 out of 139
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2735 Phosphatidylserine syn 100.0 6E-140 1E-144 1030.6 23.4 342 3-357 23-366 (466)
2 PLN02930 CDP-diacylglycerol-se 100.0 2E-138 5E-143 1015.0 30.8 317 41-357 1-318 (353)
3 PF03034 PSS: Phosphatidyl ser 100.0 6E-119 1E-123 858.0 25.8 252 104-357 1-252 (280)
4 PF04892 VanZ: VanZ like famil 65.4 23 0.0005 29.6 6.4 58 187-254 64-127 (133)
5 PF06645 SPC12: Microsomal sig 43.3 41 0.00088 27.0 4.1 36 75-110 32-67 (76)
6 PRK00159 putative septation in 39.6 1.8E+02 0.0038 24.5 7.4 52 38-90 29-82 (87)
7 PRK02251 putative septation in 39.1 1.5E+02 0.0033 24.8 6.9 53 35-90 28-82 (87)
8 PF06781 UPF0233: Uncharacteri 37.3 1.7E+02 0.0037 24.4 6.9 54 36-90 27-82 (87)
9 PF11457 DUF3021: Protein of u 30.2 2.7E+02 0.0058 23.6 7.3 33 106-138 101-133 (136)
10 PF06197 DUF998: Protein of un 29.8 1.5E+02 0.0033 25.7 6.0 29 99-127 125-153 (184)
11 KOG4112 Signal peptidase subun 28.9 1.1E+02 0.0025 26.2 4.6 34 76-109 48-81 (101)
12 CHL00204 ycf1 Ycf1; Provisiona 24.0 1.1E+02 0.0023 37.7 4.9 70 41-113 80-150 (1832)
13 PF07860 CCD: WisP family C-Te 23.3 1.1E+02 0.0024 26.8 3.7 34 323-356 90-132 (141)
14 KOG1688 Golgi proteins involve 22.9 1.1E+02 0.0024 28.9 3.9 29 109-146 63-91 (188)
15 COG5652 Predicted integral mem 22.8 53 0.0012 29.9 1.8 111 115-250 8-133 (148)
16 KOG0252 Inorganic phosphate tr 21.9 3.8E+02 0.0082 29.3 8.0 134 106-254 221-368 (538)
17 PF00689 Cation_ATPase_C: Cati 20.8 2.2E+02 0.0047 24.8 5.2 15 3-17 25-39 (182)
No 1
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=6.4e-140 Score=1030.58 Aligned_cols=342 Identities=53% Similarity=0.944 Sum_probs=322.3
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCccCCcccceecchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhHH
Q 018354 3 GNEPNGHRGVRRKDHVVQENGDTDTSSGSDELDPWTAWAYKPRTISFLLIGACFLIWASGALDPQSDSGDVVTSVKRGIW 82 (357)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ffykPhTit~L~~~~~~l~y~a~~~~~~~~~~~~~~n~~~Gi~ 82 (357)
++||++.|+.|+.....++..+.-.|.. ..|+|++|||||||||+|++++|.++|+|++.++++ ++++|+|||++
T Consensus 23 ~~e~~~~r~~~r~e~~~~~~~~~~ne~~--vdDit~dffykphTiTlL~i~~~~l~y~a~~~~~~~---~t~~N~~rGil 97 (466)
T KOG2735|consen 23 SVEPNGARKLRRDELHEKMHFRMINERV--VDDITTDFFYKPHTITLLLILICFLIYKAFTGDTEN---TTETNVKRGIL 97 (466)
T ss_pred ccCCCCccchhhhhhhhhhccCccceee--eccchhhheecCceehHHHHHHHHHHHHHHhCCCCc---chHHHHHHHHH
Confidence 5778777777666553355554444444 449999999999999999999999999999987644 36789999999
Q ss_pred HHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCC--CCCCcccccCCCcc
Q 018354 83 AMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLG--VELPERSYGADCRI 160 (357)
Q Consensus 83 a~i~~Fl~~~~l~~pdgpf~RPHPa~WR~V~gl~vlYll~LvFLLFq~~~daR~~l~~ldP~Lg--~~l~eksYa~nC~i 160 (357)
|++++||++|++|||||||+|||||+||+|||+||+|+++|+|+||||.+|+||+|+|+||+|| .++|||+||.||++
T Consensus 98 ~~i~~FL~~svlafpngpF~RPHPa~WR~vfg~SViYll~L~FlLFQ~~~d~r~~l~wldPkl~~~~~l~EkeYg~nC~~ 177 (466)
T KOG2735|consen 98 AMIAVFLIISVLAFPNGPFIRPHPALWRIVFGVSVIYLLFLQFLLFQTFDDIRQFLKWLDPKLGGQIELPEKEYGVNCSI 177 (466)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHhhhHHHHhHheeeCcccCCCcccchhhhcCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred cccCCCccchhhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhccCCCcchhhhHHHHHHHHhhH
Q 018354 161 YVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNW 240 (357)
Q Consensus 161 ~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~KaliiRd~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~ 240 (357)
|+|| |||++ +|+|++|||+||++||++|||+++||++||+||++|++|+|+||||+||||||||||||+|||
T Consensus 178 ~spd-------ri~sh-~D~Fa~aHf~GW~mKalLIR~~~lcw~iSI~wEltE~~f~hlLPNFaECWWD~iILDVLiCNg 249 (466)
T KOG2735|consen 178 YSPD-------RIWSH-LDIFAFAHFLGWAMKALLIRHWVLCWVISIMWELTELTFRHLLPNFAECWWDSIILDVLICNG 249 (466)
T ss_pred CCHH-------HHhhh-hhhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHheeccc
Confidence 9865 68887 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccccccccccCCCcccchhhhhcccCCCccccccccCCCChhHHHHHHHHHHHHHHHhhhHHHHh
Q 018354 241 FGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLK 320 (357)
Q Consensus 241 lGI~lGm~~~~~l~~k~Y~W~g~~~i~~~~gK~kr~~~QFtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FfLK 320 (357)
+|||+||++||+|+||+|+|+|+++|||++||+||++.||||+||+++||+|.+|++|+++|+.++++||++||||||||
T Consensus 250 lGI~~Gmk~c~~L~mrty~W~sik~i~t~~GK~KR~~lQFTPasW~~~~W~p~ss~~R~~~V~~lviiwlltELNTFFlK 329 (466)
T KOG2735|consen 250 LGIWAGMKTCRWLSMRTYHWESIKNIPTTRGKMKRAALQFTPASWSKFEWHPASSLRRFAAVYTLVIIWLLTELNTFFLK 329 (466)
T ss_pred chhhhHhHHHhhhcccceeeeeeccCcccchhHHHHhhccCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 018354 321 FCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR 357 (357)
Q Consensus 321 ~~Lwipp~h~l~~~RL~l~~l~~~pa~rEyY~yi~D~ 357 (357)
|+|||||+||++++||++|+++|+|++||||.|+||+
T Consensus 330 hvf~ipp~Hpvv~~RlIli~~i~aptiRqyy~y~tD~ 366 (466)
T KOG2735|consen 330 HVFWIPPKHPVVLWRLILIALIAAPTIRQYYVYLTDK 366 (466)
T ss_pred eeEecCCCCceeehhHHHHHhhccchHHHHHHHccCc
Confidence 9999999999999999999999999999999999995
No 2
>PLN02930 CDP-diacylglycerol-serine O-phosphatidyltransferase
Probab=100.00 E-value=2.3e-138 Score=1014.97 Aligned_cols=317 Identities=91% Similarity=1.645 Sum_probs=310.1
Q ss_pred eecchHHHHHHHHHHHHHHHhhccCCCC-CCCccchhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHHHHHHHHHHH
Q 018354 41 AYKPRTISFLLIGACFLIWASGALDPQS-DSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVHGMAVVY 119 (357)
Q Consensus 41 fykPhTit~L~~~~~~l~y~a~~~~~~~-~~~~~~~n~~~Gi~a~i~~Fl~~~~l~~pdgpf~RPHPa~WR~V~gl~vlY 119 (357)
+|||||||+|++++++++|++++.++++ ++.|+++|+|||+.|++++|++||++|+|||||+||||||||+|+|++|+|
T Consensus 1 ~y~phTit~l~~~~~~l~~~~~a~~~~~~~~~~~~~n~~~Gv~a~i~~fl~~~~lq~pdg~f~RPHPa~WR~v~gl~vlY 80 (353)
T PLN02930 1 AYKPHTISLLLIGACFLIWASGALDPESTTSGDLVTSVKRGVWAMIAVFLAYCLLQAPSTVLIRPHPAIWRLVHGMAVVY 80 (353)
T ss_pred CCCCccHHHHHHHHHHHHheeccccCcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHH
Confidence 5999999999999999999988776544 356788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHcCCCCCCCCcccccCCCcccccCCCccchhhhhhcccchHHHHHHHHHHHHHHHHhhh
Q 018354 120 LVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAILIRNQ 199 (357)
Q Consensus 120 ll~LvFLLFq~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~KaliiRd~ 199 (357)
+++|+||||||+|||||+||++|||||+++|||+||+||++||||||+|+|+||+|+++|+|++||++||++||+|+||+
T Consensus 81 l~~LvFLLFq~~~d~R~~l~~ldp~Lg~~lpE~~Y~~nC~~~tp~~p~~~~~ni~~~~~D~F~~aH~lGW~~KaliiRd~ 160 (353)
T PLN02930 81 LVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYTPEHPSSRFKNVYDTLFDEFVVAHILGWWGKAIMIRNQ 160 (353)
T ss_pred HHHHHHHHhccHHHHHHHHHhcChhhCCCCcccccccCceecCCCCcchhHHHhhhcccceehHHHHHHHHHHHHHHhcH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCcchhhhHHHHHHHHhhHHHHHHHHHHhhhccCccccccccccCCCcccchhhhhcc
Q 018354 200 PLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGISRQPNIIGKFKRTLGQ 279 (357)
Q Consensus 200 ~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~~k~Y~W~g~~~i~~~~gK~kr~~~Q 279 (357)
++||++||+||++|+||||+||||+||||||||||||+||++||++||++|||||||+|+|+|++++++++||+||++.|
T Consensus 161 ~l~w~~SI~FEl~Elsf~H~LPNF~ECWWDhiiLDVL~CN~lGI~lGm~~~k~l~~k~Y~W~g~~~~~~~~gk~kR~l~q 240 (353)
T PLN02930 161 PLLWVLSIGFELMELTFRHMLPNFNECWWDSIVLDVLICNWFGIWAGMHTVKYFDGKTYEWVGISRQPNIIGKVKRTLGQ 240 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchHHHHhHHHHHHHHHhhHHHHHHHHHHHHHcCCccccccccCCCCcccchhhhHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCChhHHHHHHHHHHHHHHHhhhHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 018354 280 FTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIAIPTIREYNSYLQDR 357 (357)
Q Consensus 280 FtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FfLK~~Lwipp~h~l~~~RL~l~~l~~~pa~rEyY~yi~D~ 357 (357)
|||+||++|+|++++|++|++++++++++++++|||+||||++|||||+||+|++||++|+++|+||+||||+|++|+
T Consensus 241 FTP~sw~~~~W~~~~s~~rf~~v~~l~~~~~l~eLN~FFLK~~L~ipp~h~l~~~Rl~l~~~i~~~a~rEyY~yitd~ 318 (353)
T PLN02930 241 FTPAQWDKDEWHPLQGPWRFLQVLFLCVVFLTVELNTFFLKFCLWIPPRNPLIVYRLILWWLIAIPTIREYNSFLQDR 318 (353)
T ss_pred cCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2.7.8 from EC). This family represents eukaryotic PSS I and II, membrane bound proteins that catalyse the replacement of the head group of a phospholipid (phosphotidylcholine or phosphotidylethanolamine) by L-serine.; GO: 0006659 phosphatidylserine biosynthetic process
Probab=100.00 E-value=5.5e-119 Score=858.02 Aligned_cols=252 Identities=60% Similarity=1.201 Sum_probs=250.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCCCCCCcccccCCCcccccCCCccchhhhhhcccchHHH
Q 018354 104 PHPAIWRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVL 183 (357)
Q Consensus 104 PHPa~WR~V~gl~vlYll~LvFLLFq~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tp~~p~~~~~ni~~~~~DiF~~ 183 (357)
|||||||+|+|++|+|+++|+||||||+|||||+|+++||+||+++|||+||+||++++||||+|. +||+++ +|+|++
T Consensus 1 PHPa~WR~v~g~~v~Y~~~L~fllfq~~~~~r~~l~~~dp~Lg~~~~e~~Ya~nC~~~~~~~p~~~-~ni~~~-~D~f~~ 78 (280)
T PF03034_consen 1 PHPAFWRIVFGLSVLYLLFLVFLLFQNRDDARQILKYLDPSLGKPLPEKSYAENCRIYTPENPESP-HNIWDT-FDIFVL 78 (280)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCcccCCCCCCcCccCCCeeCCCCCCCcc-hhhHhh-cchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 999999 799999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhccCCCcchhhhHHHHHHHHhhHHHHHHHHHHhhhccCcccccccc
Q 018354 184 AHIFGWWGKAILIRNQPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGI 263 (357)
Q Consensus 184 aH~~GW~~KaliiRd~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~~k~Y~W~g~ 263 (357)
||++||++||+|+||+++||++||+||++|+||||+||||+||||||||||||+||++||++||++|||||||+|+|+|+
T Consensus 79 aH~~GW~~Kali~Rd~~l~w~~Si~fE~~Elsf~h~LPnF~ECWWD~~iLDvl~CN~~Gi~~Gm~~~~~l~~k~Y~W~g~ 158 (280)
T PF03034_consen 79 AHFLGWFGKALILRDWWLCWILSIAFELLELSFQHLLPNFNECWWDHWILDVLICNGLGIWLGMKTCRYLEMKEYDWRGI 158 (280)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccchhhhhcccCCCccccccccCCCChhHHHHHHHHHHHHHHHhhhHHHHhhhhhcCCCChhHHHHHHHHHHHH
Q 018354 264 SRQPNIIGKFKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLTLCIIFLTVELNTFFLKFCLWVPPRNPVIIYRLILWWLIA 343 (357)
Q Consensus 264 ~~i~~~~gK~kr~~~QFtP~sw~~~~W~~~~s~~R~~~v~~l~~~~ll~ELN~FfLK~~Lwipp~h~l~~~RL~l~~l~~ 343 (357)
+++|+++||+||+++||||+||++|+|++++|++|++++++++++++++|||+||||++|||||+||+|++||++|+++|
T Consensus 159 ~~~~~~~gk~kr~~~QFtP~sw~~~~W~~~~s~~rf~~v~~l~~~~ll~ELN~FFLK~vLwIPp~H~Lv~~RL~l~~li~ 238 (280)
T PF03034_consen 159 RDIPTYRGKLKRALLQFTPYSWTKYEWKPFSSPKRFLQVLFLLIVFLLSELNTFFLKHVLWIPPSHPLVIYRLLLWFLIG 238 (280)
T ss_pred ccCCchhHHHHHHHHccCCCcCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCC
Q 018354 344 IPTIREYNSYLQDR 357 (357)
Q Consensus 344 ~pa~rEyY~yi~D~ 357 (357)
+||+||||+|++|+
T Consensus 239 ~pAiREyY~yitd~ 252 (280)
T PF03034_consen 239 APAIREYYEYITDP 252 (280)
T ss_pred HHHHHHHHHHccCC
Confidence 99999999999996
No 4
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=65.45 E-value=23 Score=29.60 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=36.0
Q ss_pred HHHHHHHHHHh--hh----hHHHHHHHHHHHHHHHhhhccCCCcchhhhHHHHHHHHhhHHHHHHHHHHhhhcc
Q 018354 187 FGWWGKAILIR--NQ----PLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTVRYFD 254 (357)
Q Consensus 187 ~GW~~KaliiR--d~----~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~~l~ 254 (357)
+|+..-...-| .+ .+|-..|++.|+. |-.+|.- ..- +-|+ ++|++|..+|..+.+.+.
T Consensus 64 lG~l~~~~~~~~~~~~~~~~~~~~~sl~iE~~----Q~~~~~r-~~d----~~Dv-~~n~~G~~lG~~l~~~~~ 127 (133)
T PF04892_consen 64 LGFLLPLLFRRLRSWLLAILIGFLFSLFIELI----QLFLPGR-SFD----IDDV-LANTLGALLGYLLYRLIR 127 (133)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHH----hccCCCC-CCC----HHHH-HHHHHHHHHHHHHHHHHH
Confidence 45555444432 33 4455666666665 6777765 222 3344 789999999999887654
No 5
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=43.32 E-value=41 Score=27.02 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.1
Q ss_pred hhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHH
Q 018354 75 TSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWR 110 (357)
Q Consensus 75 ~n~~~Gi~a~i~~Fl~~~~l~~pdgpf~RPHPa~WR 110 (357)
++.+..+.+.++.+++-.++..||=|+-|-||.=|.
T Consensus 32 q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~ 67 (76)
T PF06645_consen 32 QSFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWL 67 (76)
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccCC
Confidence 366777766666667777788999999999998774
No 6
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=39.64 E-value=1.8e+02 Score=24.46 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=26.0
Q ss_pred ccceecchHHHHHHHHHHHH--HHHhhccCCCCCCCccchhhhhhHHHHHHHHHh
Q 018354 38 TAWAYKPRTISFLLIGACFL--IWASGALDPQSDSGDVVTSVKRGIWAMIAVFLT 90 (357)
Q Consensus 38 ~~ffykPhTit~L~~~~~~l--~y~a~~~~~~~~~~~~~~n~~~Gi~a~i~~Fl~ 90 (357)
..=-|.|--+.+++++++-+ -|.+...-|-- ++=-.-|.-.|...+++.|++
T Consensus 29 sp~W~~~~m~glm~~GllWlvvyYl~~~~~P~m-~~lG~WN~~IGFg~~i~G~lm 82 (87)
T PRK00159 29 SSVWYVVLMLGLMLIGLAWLVVNYLAGPAIPWM-ADLGPWNYAIGFALMITGLLM 82 (87)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhccCCCCCC-cccCchhHHHHHHHHHHHHHH
Confidence 34445998888888877633 23322111100 000124777776555555543
No 7
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=39.12 E-value=1.5e+02 Score=24.81 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=26.6
Q ss_pred CCcccceecchHHHHHHHHHHHH--HHHhhccCCCCCCCccchhhhhhHHHHHHHHHh
Q 018354 35 DPWTAWAYKPRTISFLLIGACFL--IWASGALDPQSDSGDVVTSVKRGIWAMIAVFLT 90 (357)
Q Consensus 35 D~~~~ffykPhTit~L~~~~~~l--~y~a~~~~~~~~~~~~~~n~~~Gi~a~i~~Fl~ 90 (357)
.++-.| |.|--+.+++++++-+ -|.+...-| - ++=-.-|.-.|....++.|++
T Consensus 28 ~~sP~W-~~~~m~~lm~~Gl~WlvvyYl~~~~~P-~-~~lG~WN~~IGfg~~~~G~~m 82 (87)
T PRK02251 28 KSNPRW-FVPLFVALMIIGLIWLVVYYLSNGSLP-I-PALGAWNLVIGFGLIMAGFGM 82 (87)
T ss_pred CCCCch-HHHHHHHHHHHHHHHHHHHhhhCCCcC-c-ccccchhHHHHHHHHHHHHHH
Confidence 334444 5898888888877633 233221111 1 100124777776555555543
No 8
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=37.27 E-value=1.7e+02 Score=24.44 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=29.1
Q ss_pred CcccceecchHHHHHHHHHHHH-HHHhhccC-CCCCCCccchhhhhhHHHHHHHHHh
Q 018354 36 PWTAWAYKPRTISFLLIGACFL-IWASGALD-PQSDSGDVVTSVKRGIWAMIAVFLT 90 (357)
Q Consensus 36 ~~~~ffykPhTit~L~~~~~~l-~y~a~~~~-~~~~~~~~~~n~~~Gi~a~i~~Fl~ 90 (357)
....=-|.|--+++++++++-+ +|+....+ +.-.+ =-.-|.-.|...+++.|++
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~~i~pi~~-lG~WN~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGGQIPPIPD-LGNWNLAIGFGLMIVGFLM 82 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccCCCCCccc-ccchHHHHHHHHHHHHHHH
Confidence 3444446999999888887633 33322221 11110 0124777777666666654
No 9
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=30.23 E-value=2.7e+02 Score=23.57 Aligned_cols=33 Identities=9% Similarity=0.263 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 018354 106 PAIWRLVHGMAVVYLVALTFLLFQKRDDARQFM 138 (357)
Q Consensus 106 Pa~WR~V~gl~vlYll~LvFLLFq~~~daR~~l 138 (357)
++++-......++|++.-...-.|++.|+|++=
T Consensus 101 ~~~~~~~~~fi~IYliIw~~~y~~~k~~i~kiN 133 (136)
T PF11457_consen 101 ISLLIFILIFIIIYLIIWLIFYLYWKKDIKKIN 133 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777788889999999999999999999873
No 10
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=29.84 E-value=1.5e+02 Score=25.74 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=14.1
Q ss_pred CcccCCChhHHHHHHHHHHHHHHHHHHHh
Q 018354 99 TVLIRPHPAIWRLVHGMAVVYLVALTFLL 127 (357)
Q Consensus 99 gpf~RPHPa~WR~V~gl~vlYll~LvFLL 127 (357)
....|+.++.-|...+++++=...+..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
T PF06197_consen 125 SLRRRRRWARRRLFSAVALLLFVALLLLF 153 (184)
T ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444444443
No 11
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.90 E-value=1.1e+02 Score=26.20 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHHhhhhccCCCCcccCCChhHH
Q 018354 76 SVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIW 109 (357)
Q Consensus 76 n~~~Gi~a~i~~Fl~~~~l~~pdgpf~RPHPa~W 109 (357)
....-+.++.+.|..=+.+..|-=|+.|-||-.|
T Consensus 48 qls~tvy~vg~~~v~t~li~LPpwP~y~rn~LkW 81 (101)
T KOG4112|consen 48 QLSVTVYIVGAGFVFTLLITLPPWPWYRRNPLKW 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhhcCcccc
Confidence 3444455566666666778899999999999877
No 12
>CHL00204 ycf1 Ycf1; Provisional
Probab=24.04 E-value=1.1e+02 Score=37.70 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=33.8
Q ss_pred eecchHHHHHHHHHHHHHHHhhcc-CCCCCCCccchhhhhhHHHHHHHHHhhhhccCCCCcccCCChhHHHHHH
Q 018354 41 AYKPRTISFLLIGACFLIWASGAL-DPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQAPSTVLIRPHPAIWRLVH 113 (357)
Q Consensus 41 fykPhTit~L~~~~~~l~y~a~~~-~~~~~~~~~~~n~~~Gi~a~i~~Fl~~~~l~~pdgpf~RPHPa~WR~V~ 113 (357)
+-||||||+|++--..+=++-... +..+ -+.+..|.-|.+-.-++ ||-=-++|+= .||+=|-|.+=|+|.
T Consensus 80 LgRPHtITvL~lPYllFhffw~n~K~ff~-y~stt~nSmrn~~iq~v-FlnnlifQl~-N~~iLpss~LaRLvn 150 (1832)
T CHL00204 80 LGRPHTITVLALPYLLFHFFWNNHKHFFD-YGSTTRNSMRNLSIQCV-FLNNLIFQLF-NHFILPSSMLARLVN 150 (1832)
T ss_pred HcCchhhHHHHHHHHHHHHHHhcCCCccc-cCCCccccccchhHHHH-HHhhHHHHHh-hHhhcccHHHHHHHH
Confidence 368999999886433331121111 1111 11112243333332222 3222223333 378999999999874
No 13
>PF07860 CCD: WisP family C-Terminal Region; InterPro: IPR012421 This entry represents the C-terminal domain found in the Tropheryma whipplei WisP family of proteins [].
Probab=23.33 E-value=1.1e+02 Score=26.83 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=21.4
Q ss_pred hhcCCCChhHHHHHHHHHHHH---------HHHHHHHHhhccC
Q 018354 323 LWVPPRNPVIIYRLILWWLIA---------IPTIREYNSYLQD 356 (357)
Q Consensus 323 Lwipp~h~l~~~RL~l~~l~~---------~pa~rEyY~yi~D 356 (357)
-+-||+||+-..---+=..-| ..+.+.|+.|++|
T Consensus 90 tqkppehplksvneqiktvtgavnnfqksvltslkdfftyltd 132 (141)
T PF07860_consen 90 TQKPPEHPLKSVNEQIKTVTGAVNNFQKSVLTSLKDFFTYLTD 132 (141)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345777777665444333332 3467889999987
No 14
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.91 E-value=1.1e+02 Score=28.89 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHcCCCC
Q 018354 109 WRLVHGMAVVYLVALTFLLFQKRDDARQFMKFLHPDLG 146 (357)
Q Consensus 109 WR~V~gl~vlYll~LvFLLFq~~~daR~~l~~ldP~Lg 146 (357)
|=+|--..-+|++= .|+.|.++. .||+++
T Consensus 63 ~YII~Y~LgIYlLN-lfiaFLtPk--------~Dp~~~ 91 (188)
T KOG1688|consen 63 FYIITYALGIYLLN-LFIAFLTPK--------VDPELQ 91 (188)
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCC--------CCchhh
Confidence 44444444455543 355666665 888884
No 15
>COG5652 Predicted integral membrane protein [Function unknown]
Probab=22.77 E-value=53 Score=29.94 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHcCCCCCCCCcccccCCCcccccCCCccchhhhhhcccchHHHHHHHHHHHHHH
Q 018354 115 MAVVYLVALTFLLFQKRDDARQFMKFLHPDLGVELPERSYGADCRIYVHENPTSRFKNVYETLFDEFVLAHIFGWWGKAI 194 (357)
Q Consensus 115 l~vlYll~LvFLLFq~~~daR~~l~~ldP~Lg~~l~eksYa~nC~i~tp~~p~~~~~ni~~~~~DiF~~aH~~GW~~Kal 194 (357)
.+++|+..+-++--|++|.+|+-+-..+=..... +.+|. |..|.++.+..++ -.||++|.+.+++
T Consensus 8 ~~i~~~~~v~~~s~~Pp~~~r~~l~v~~fl~~~~------~~~~~---~~~~~~~~~~~~~------k~aH~~~Yf~lg~ 72 (148)
T COG5652 8 AGILWMKLVFPFSSQPPDSYRLTLLVHNFLSVYD------ALKPL---PPRPLPVVNHRID------KLAHFLGYFSLGI 72 (148)
T ss_pred HHhhHHhhccccCCCChhHhhhhchHHHHHHHHH------HhccC---CCCCCCcccchHH------HHHHHHHHHHHHH
Confidence 4556666666666677765555433222110000 22232 1122222344444 4699999999985
Q ss_pred HH----hh-----------hhHHHHHHHHHHHHHHHhhhccCCCcchhhhHHHHHHHHhhHHHHHHHHHHh
Q 018354 195 LI----RN-----------QPLLWLLSIGFELMELTFRHMLPNFNECWWDSIILDILICNWFGIWAGMHTV 250 (357)
Q Consensus 195 ii----Rd-----------~~l~w~~SI~fEl~Elsf~H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~ 250 (357)
++ |+ ..+|..++++.|.-...+ |- =+.-+-|| +.|++|-.+|+...
T Consensus 73 l~f~ls~~~r~~~~~ai~av~i~~~~~~ldE~~Q~f~----PG-----R~~sl~Dv-i~d~iGA~lg~~~~ 133 (148)
T COG5652 73 LLFGLSRSTRLTGVIAIAAVFIGTLYGILDEVHQTFL----PG-----RAASLVDV-IADTIGAVLGHIWE 133 (148)
T ss_pred HhheeecccccceeehhhHHHHHHHHHHHHHHHHhhc----CC-----cchHHHHH-HHHHhhhheeeeEE
Confidence 53 22 257888899998765544 32 14567888 67888998887653
No 16
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=21.89 E-value=3.8e+02 Score=29.29 Aligned_cols=134 Identities=17% Similarity=0.291 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHcCC-----CCCCCCc-ccccCCCcccccCCCccchhhhhhccc
Q 018354 106 PAIWRLVHGMAVVYLVALTFLLFQKRDDARQF-MKFLHPD-----LGVELPE-RSYGADCRIYVHENPTSRFKNVYETLF 178 (357)
Q Consensus 106 Pa~WR~V~gl~vlYll~LvFLLFq~~~daR~~-l~~ldP~-----Lg~~l~e-ksYa~nC~i~tp~~p~~~~~ni~~~~~ 178 (357)
-.+||+++|++.+--+....-=---+|++|.- |.-=||+ ..++++. -+-+++-+. +...|.+.+.
T Consensus 221 d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~-~~~~~~~~~~------- 292 (538)
T KOG0252|consen 221 DGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAES-DVPPPSNSFG------- 292 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhcccc-CCCCcccccc-------
Confidence 47999999999887665554444455555554 2122322 2222221 000111111 1112222222
Q ss_pred chHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHH----Hhh--hccCCCcchhhhHHHHHHHHhhHHHHHHHHHHhh
Q 018354 179 DEFVLAHIFGWWGKAILIRNQPLLWL-LSIGFELMEL----TFR--HMLPNFNECWWDSIILDILICNWFGIWAGMHTVR 251 (357)
Q Consensus 179 DiF~~aH~~GW~~KaliiRd~~l~w~-~SI~fEl~El----sf~--H~LPNF~ECWWDh~iLDVL~CN~lGI~lGm~~~~ 251 (357)
-+..|+.-|-+|-++- --.+|+ +.|+|==.-+ -++ -+.|-=+|= |...++-.-|.+=+.+|-.---
T Consensus 293 --~F~~~f~~~hg~~Llg--t~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~vPGy 365 (538)
T KOG0252|consen 293 --LFSRLFLRWHGKHLLG--TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCSTVPGY 365 (538)
T ss_pred --hHHHHHHHHHHHHHHH--HHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHccCCce
Confidence 2456677775554432 223343 2333211111 123 345666666 8888888888877766654444
Q ss_pred hcc
Q 018354 252 YFD 254 (357)
Q Consensus 252 ~l~ 254 (357)
++.
T Consensus 366 w~t 368 (538)
T KOG0252|consen 366 WFT 368 (538)
T ss_pred eEE
Confidence 333
No 17
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=20.77 E-value=2.2e+02 Score=24.81 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=8.0
Q ss_pred CCCCCCCCCcccccc
Q 018354 3 GNEPNGHRGVRRKDH 17 (357)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (357)
|+||+.++-++++|.
T Consensus 25 ~~e~~~~~im~r~Pr 39 (182)
T PF00689_consen 25 GFEPPDPDIMKRPPR 39 (182)
T ss_dssp GGSS-STTGGGS---
T ss_pred hcCcchhhhhhcccc
Confidence 677877777776665
Done!