Query 018354
Match_columns 357
No_of_seqs 118 out of 139
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_B Na+,K+-ATPase beta subu 10.1 2.6E+02 0.0089 26.7 4.4 54 37-106 13-84 (305)
2 1uwd_A Hypothetical protein TM 9.9 1.4E+02 0.0047 23.3 2.1 29 130-158 7-36 (103)
3 1jb0_J Photosystem 1 reaction 9.7 2.7E+02 0.0092 19.4 3.2 19 300-318 15-33 (41)
4 1wex_A Hypothetical protein (r 7.7 1.9E+02 0.0067 22.4 2.1 43 124-166 54-99 (104)
5 1jb0_K Photosystem 1 reaction 6.6 1.2E+02 0.0041 24.2 0.3 21 232-252 16-36 (83)
6 3arc_T Photosystem II reaction 6.6 4.6E+02 0.016 17.4 3.1 18 50-67 9-27 (32)
7 1pxv_A Cysteine protease; hydr 6.1 2.5E+02 0.0085 25.3 2.2 20 132-151 51-71 (183)
8 3cq1_A Putative uncharacterize 6.0 2E+02 0.0067 22.4 1.3 23 131-153 8-31 (103)
9 1wqc_A OMTX1; toxin; NMR {Opis 5.7 2.1E+02 0.0072 18.1 1.0 14 212-226 4-17 (26)
10 1mm0_A Termicin; termite, cyte 5.6 1E+02 0.0035 21.0 -0.5 6 222-227 3-8 (36)
No 1
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=10.06 E-value=2.6e+02 Score=26.73 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=20.2
Q ss_pred cccceecchHHHHHH-----HHHHHHHHHhhccCCCCCCCccchhhhhhHHHHHHHHHhhhhcc-------------CCC
Q 018354 37 WTAWAYKPRTISFLL-----IGACFLIWASGALDPQSDSGDVVTSVKRGIWAMIAVFLTYCLLQ-------------APS 98 (357)
Q Consensus 37 ~~~ffykPhTit~L~-----~~~~~l~y~a~~~~~~~~~~~~~~n~~~Gi~a~i~~Fl~~~~l~-------------~pd 98 (357)
.-.|+|.|.|=++|. -+-+++.|.++ .|++|+++.+++..++| .+-
T Consensus 13 ~k~f~~n~~~~~~lGRT~~sW~~IllFYliF----------------Y~~La~lF~~~m~v~l~tl~~~~Pk~q~~i~~P 76 (305)
T 2zxe_B 13 WKKFLWDSEKKEFLGRTGSSWFKIFLFYLIF----------------YGCLAGIFIGTIQVLLLTLSDFEPKYQDRVAPP 76 (305)
T ss_dssp ---------------CCSTTHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHTSCSSSCSCCTTTCSC
T ss_pred hhhheeCcccCeEecccHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHccccCCccccCCCCC
Confidence 457888888877664 12233444433 23455555555444443 334
Q ss_pred CcccCCCh
Q 018354 99 TVLIRPHP 106 (357)
Q Consensus 99 gpf~RPHP 106 (357)
|.-+||.|
T Consensus 77 GL~~~P~~ 84 (305)
T 2zxe_B 77 GLSHAPYA 84 (305)
T ss_dssp CBCCSSCC
T ss_pred eeeEecCC
Confidence 89999998
No 2
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=9.93 E-value=1.4e+02 Score=23.27 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=21.3
Q ss_pred ChHHHHHHHH-HHcCCCCCCCCcccccCCC
Q 018354 130 KRDDARQFMK-FLHPDLGVELPERSYGADC 158 (357)
Q Consensus 130 ~~~daR~~l~-~ldP~Lg~~l~eksYa~nC 158 (357)
+.+++++.|+ ..||++|..+.+-..=.++
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v 36 (103)
T 1uwd_A 7 TKEDVLNALKNVIDFELGLDVVSLGLVYDI 36 (103)
T ss_dssp CHHHHHHHHTTCBCTTTSSBTTTTTCCCCE
T ss_pred hHHHHHHHHcCCCCCCCCcChhhcCCeeEE
Confidence 5688999997 5599999988775433333
No 3
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=9.69 E-value=2.7e+02 Score=19.43 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 018354 300 IQVLTLCIIFLTVELNTFF 318 (357)
Q Consensus 300 ~~v~~l~~~~ll~ELN~Ff 318 (357)
..+.+-....++.|.|-||
T Consensus 15 a~~w~~~tAg~lIEiNRff 33 (41)
T 1jb0_J 15 AAIWMTITAGILIEFNRFY 33 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3344445677889999998
No 4
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=7.68 E-value=1.9e+02 Score=22.35 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=29.8
Q ss_pred HHHhccChHHHHHHHHHHcC---CCCCCCCcccccCCCcccccCCC
Q 018354 124 TFLLFQKRDDARQFMKFLHP---DLGVELPERSYGADCRIYVHENP 166 (357)
Q Consensus 124 vFLLFq~~~daR~~l~~ldP---~Lg~~l~eksYa~nC~i~tp~~p 166 (357)
.|.-|.+.++|.+.++.++- .++...-.-+|+..=++..|.|+
T Consensus 54 aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~~~~~ 99 (104)
T 1wex_A 54 ALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNS 99 (104)
T ss_dssp EEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccccCCCCC
Confidence 78889999999999998753 35433334567766666666554
No 5
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=6.61 E-value=1.2e+02 Score=24.16 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=13.7
Q ss_pred HHHHHHhhHHHHHHHHHHhhh
Q 018354 232 ILDILICNWFGIWAGMHTVRY 252 (357)
Q Consensus 232 iLDVL~CN~lGI~lGm~~~~~ 252 (357)
=+=..+||.+.|.+|-.+.|+
T Consensus 16 ~iIMI~cN~lai~igk~~I~~ 36 (83)
T 1jb0_K 16 GLVVILCNLFAIALGRYAIQS 36 (83)
T ss_dssp ----CHHHHHHHHHHHC-CCC
T ss_pred ceeehhHHHHHHHHHHHHHcC
Confidence 344579999999999887743
No 6
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=6.60 E-value=4.6e+02 Score=17.36 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=9.0
Q ss_pred HHHHHH-HHHHHhhccCCC
Q 018354 50 LLIGAC-FLIWASGALDPQ 67 (357)
Q Consensus 50 L~~~~~-~l~y~a~~~~~~ 67 (357)
+++++. ++.++.+.++|+
T Consensus 9 ll~~tlgiiFFAI~FRePP 27 (32)
T 3arc_T 9 IFACIIALFFFAIFFREPP 27 (32)
T ss_dssp HHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhhhhcCCC
Confidence 444444 444444667664
No 7
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=6.14 E-value=2.5e+02 Score=25.32 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCCC-CCCCc
Q 018354 132 DDARQFMKFLHPDLG-VELPE 151 (357)
Q Consensus 132 ~daR~~l~~ldP~Lg-~~l~e 151 (357)
-.|+++|+.+.|++. ++++.
T Consensus 51 ~nA~~iMr~~yPN~s~~~l~~ 71 (183)
T 1pxv_A 51 YNAHDIMRTLYPEVSEQDLPN 71 (183)
T ss_dssp CCHHHHHHHHSTTSCTTTGGG
T ss_pred CCHHHHHHHHCCCCChhHHhh
Confidence 359999999999995 44554
No 8
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=6.04 E-value=2e+02 Score=22.41 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=18.4
Q ss_pred hHHHHHHHHH-HcCCCCCCCCccc
Q 018354 131 RDDARQFMKF-LHPDLGVELPERS 153 (357)
Q Consensus 131 ~~daR~~l~~-ldP~Lg~~l~eks 153 (357)
.+++++.|+- .||++|..+.+-.
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG 31 (103)
T 3cq1_A 8 EAQAWALLEAVYDPELGLDVVNLG 31 (103)
T ss_dssp HHHHHHHHTTCBCTTTCSBTTTTT
T ss_pred HHHHHHHHhCCCCCCCCcCchhcC
Confidence 5788999975 7999999887643
No 9
>1wqc_A OMTX1; toxin; NMR {Opisthacanthus madagascariensis} PDB: 1wqd_A
Probab=5.75 E-value=2.1e+02 Score=18.08 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=10.4
Q ss_pred HHHHhhhccCCCcch
Q 018354 212 MELTFRHMLPNFNEC 226 (357)
Q Consensus 212 ~Elsf~H~LPNF~EC 226 (357)
.|.-+|| -||-+||
T Consensus 4 ~evClqh-~gNVkeC 17 (26)
T 1wqc_A 4 YEVCLQQ-HGNVKEC 17 (26)
T ss_dssp HHHHHHH-CCCSHHH
T ss_pred HHHHHHh-CCCHHHH
Confidence 4666777 4888888
No 10
>1mm0_A Termicin; termite, cytein-rich, antimicrobial peptide, insect defensin, CSAB motif, antimicrobial protein; NMR {Pseudacanthotermes spiniger} SCOP: g.3.7.4
Probab=5.59 E-value=1e+02 Score=21.00 Aligned_cols=6 Identities=67% Similarity=2.073 Sum_probs=0.0
Q ss_pred CCcchh
Q 018354 222 NFNECW 227 (357)
Q Consensus 222 NF~ECW 227 (357)
||++||
T Consensus 3 ~~~sCW 8 (36)
T 1mm0_A 3 NFQSCW 8 (36)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Done!