BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018355
         (357 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
           38
          Length = 75

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHD 345
           C +C+ D++  + L+VL C HEFHA CVD WL K    CP+C+ D
Sbjct: 26  CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL-KANRTCPICRAD 69


>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Of Ring Finger Protein 126
          Length = 78

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 288 SSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347
           SS +      G  C +C EDY  GE ++ L C H FH SC+  WL +  + CPVC+  + 
Sbjct: 5   SSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS-CPVCRKSLT 63

Query: 348 N-NSESNEVGV 357
             N+ +N  G+
Sbjct: 64  GQNTATNPPGL 74


>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
          Length = 55

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 298 GETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCK 343
           G  CA+CL + +DGE+ + L  C H FHA CVD WL    T CP+C+
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST-CPLCR 50


>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
          Length = 69

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346
           C ICL   ++GE ++ L C H FH  CVD WL      CP+C+ D+
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDI 61


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
           Protein 24
          Length = 74

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342
           E CA+CLED++  ++L +  CKH FH  C+  WL +    CP+C
Sbjct: 16  ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWL-EVRKVCPLC 58


>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
           Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
           Northeast Structural Genomics Consortium (Nesg) Target
           Hr4710b
          Length = 91

 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 267 NQPLSRRLDSKVVEALPCFLFSSASSSQCHGGETCA-ICLEDYQDGEKLKVLSCKHEFHA 325
           N P S+    + ++ALP  L +    +   G E C  IC  +Y  G+    L C H FH 
Sbjct: 14  NPPASK----ESIDALPEILVTEDHGAV--GQEMCCPICCSEYVKGDVATELPCHHYFHK 67

Query: 326 SCVDSWLTKWGTFCPVCK 343
            CV  WL K GT CPVC+
Sbjct: 68  PCVSIWLQKSGT-CPVCR 84


>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
           C5a Peptidase From Streptococcus Pyogenes (Scpa)
          Length = 936

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 150 FVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGV 209
             LI RG   F+DKI NA+ AG    ++Y++++KG  + +    +   + A F+S + G+
Sbjct: 292 IALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQ---MPAAFISRKDGL 348

Query: 210 YLKEHAR 216
            LK++++
Sbjct: 349 LLKDNSK 355


>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
 pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
           Bestatin
          Length = 421

 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 150 FVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGV 209
             LI RG   F DK+RNA   G +A I+YN+ + G L       +   V A+ ++ + G 
Sbjct: 117 IALIQRGNISFADKVRNAAKQGAKAVIIYNNTD-GKLNGTLGGSDASFVAAVGITKQEGD 175

Query: 210 YLKEHAR 216
            L  + R
Sbjct: 176 ALAANLR 182


>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 141
          Length = 70

 Score = 36.2 bits (82), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESN 353
           E C IC+    DG    +L C H F   C+D W  +    CP+C+  M   +ES+
Sbjct: 16  EECCICM----DGRADLILPCAHSFCQKCIDKWSDRH-RNCPICRLQMTGANESS 65


>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
           Ubiquitination Activity
          Length = 83

 Score = 36.2 bits (82), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 295 CHGGET---CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347
           C  G T   C IC E+ +D   +K+  C H    SC+ SW    G  CP C+ +++
Sbjct: 18  CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 70


>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
          Length = 84

 Score = 35.8 bits (81), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 295 CHGGET---CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347
           C  G T   C IC E+ +D   +K+  C H    SC+ SW    G  CP C+ +++
Sbjct: 21  CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 73


>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
          Length = 391

 Score = 34.7 bits (78), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 295 CHGGET---CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350
           C  G T   C IC E+ +D   +K+  C H    SC+ SW    G  CP C+ +++   
Sbjct: 328 CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 383


>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
           Ubiquitin-Protein Ligases
          Length = 388

 Score = 34.7 bits (78), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 295 CHGGET---CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350
           C  G T   C IC E+ +D   +K+  C H    SC+ SW    G  CP C+ +++   
Sbjct: 326 CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381


>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
           Complex
          Length = 391

 Score = 34.7 bits (78), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 295 CHGGET---CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350
           C  G T   C IC E+ +D   +K+  C H    SC+ SW    G  CP C+ +++   
Sbjct: 328 CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 383


>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
 pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
 pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
 pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
 pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
 pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
 pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
 pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
          Length = 389

 Score = 34.7 bits (78), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 295 CHGGET---CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350
           C  G T   C IC E+ +D   +K+  C H    SC+ SW    G  CP C+ +++   
Sbjct: 326 CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381


>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
           Tyr363 Phosphorylated Form
          Length = 82

 Score = 34.7 bits (78), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 295 CHGGET---CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347
           C  G T   C IC E+ +D   +K+  C H    SC+ +W    G  CP C+ +++
Sbjct: 20  CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 72


>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
          Length = 138

 Score = 33.9 bits (76), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350
           C IC E + +      L+C H F + C++ W+ K    CP+C+ D+++ +
Sbjct: 56  CIICSEYFIEA---VTLNCAHSFCSYCINEWM-KRKIECPICRKDIKSKT 101


>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
          Length = 138

 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350
           C IC E + +      L+C H F + C++ W+ K    CP+C+ D+++ +
Sbjct: 56  CIICSEYFIEA---VTLNCAHSFCSYCINEWM-KRKIECPICRKDIKSKT 101


>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
          Length = 149

 Score = 33.5 bits (75), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352
           C IC E + +      L+C H F + C++ W+ K    CP+C+ D+++ + S
Sbjct: 67  CIICSEYFIEA---VTLNCAHSFCSYCINEWM-KRKIECPICRKDIKSKTYS 114


>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
 pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
 pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
          Length = 394

 Score = 32.7 bits (73), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 295 CHGGET---CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347
           C  G T   C IC E+ +D   +K+  C H    SC+ +W    G  CP C+ +++
Sbjct: 332 CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 384


>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
          Length = 165

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 268 QPLSR-------RLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCK 320
           QPLS+        L     EA+   L    S    H    C ICL+  ++    K   C 
Sbjct: 17  QPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTK--ECL 74

Query: 321 HEFHASCVDSWLTKWGTFCPVCKHDM 346
           H F A C+ + L      CP C+  +
Sbjct: 75  HRFCADCIITALRSGNKECPTCRKKL 100


>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
          Length = 121

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 267 NQPLSR-------RLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSC 319
            QPLS+        L     EA+   L    S    H    C ICL+  ++    K   C
Sbjct: 15  TQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTK--EC 72

Query: 320 KHEFHASCVDSWLTKWGTFCPVCKHDM 346
            H F A C+ + L      CP C+  +
Sbjct: 73  LHRFCADCIITALRSGNKECPTCRKKL 99


>pdb|3ICU|A Chain A, Protease-Associated Domain Of The E3 Ligase Grail
          Length = 194

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 131 DACSPLSN---PVASNDADHINFVLIVR--GQCIFEDKIRNAQAAGYRAAIVYN-DREKG 184
           +AC+P +N   P        ++++ +++  G C F DKI  A   G   A+++N    + 
Sbjct: 84  NACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRN 143

Query: 185 SLVSMTASHEG-VKVHAIFV-SLETGVYLKEHARGETGECCIFPESNRGSW 233
            ++ M  SH G V + AI + +L+    L+   RG      I      G W
Sbjct: 144 EVIPM--SHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPW 192


>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Ring-Box Protein 2
          Length = 81

 Score = 30.0 bits (66), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 13/59 (22%)

Query: 299 ETCAIC------------LEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHD 345
           +TCAIC             E+ Q+   +    C H FH  C+  W+ K    CP+C+ D
Sbjct: 16  DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-KQNNRCPLCQQD 73


>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
           Ligase Complex
          Length = 100

 Score = 30.0 bits (66), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 291 SSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346
           S    H    C ICL+  ++    K   C H F A C+ + L      CP C+  +
Sbjct: 27  SPRSLHSELMCPICLDMLKNTMTTK--ECLHRFCADCIITALRSGNKECPTCRKKL 80


>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
           Tripartite Motif-containing Protein 31
          Length = 73

 Score = 29.3 bits (64), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDS-WLTKWGTF-CPVCKHDMRNNS 350
           C ICL+  Q   K   + C H F   C+     T  G F CP+CK  +R N+
Sbjct: 23  CPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71


>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
           Heterodimer
          Length = 112

 Score = 27.7 bits (60), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLT--KWGTFCPVCKHDMRNNS 350
           C ICLE  ++    K   C H F   C+   L   K  + CP+CK+D+   S
Sbjct: 24  CPICLELIKEPVSTK---CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,697,586
Number of Sequences: 62578
Number of extensions: 366127
Number of successful extensions: 686
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 33
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)