Query 018355
Match_columns 357
No_of_seqs 351 out of 2947
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 100.0 4.7E-53 1E-57 402.6 14.2 252 100-353 32-284 (348)
2 cd02123 PA_C_RZF_like PA_C-RZF 99.9 5.7E-23 1.2E-27 178.5 14.0 119 101-220 21-142 (153)
3 cd02125 PA_VSR PA_VSR: Proteas 99.9 6.4E-23 1.4E-27 172.6 11.9 109 110-219 1-121 (127)
4 cd02126 PA_EDEM3_like PA_EDEM3 99.9 1.4E-22 2.9E-27 170.6 11.9 109 106-218 2-119 (126)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 2.9E-22 6.2E-27 166.6 12.3 108 110-221 1-112 (118)
6 cd02122 PA_GRAIL_like PA _GRAI 99.9 3E-21 6.4E-26 164.7 13.0 111 107-219 18-132 (138)
7 cd02132 PA_GO-like PA_GO-like: 99.8 1.2E-20 2.7E-25 161.3 12.2 112 100-219 15-133 (139)
8 cd04813 PA_1 PA_1: Protease-as 99.8 2.1E-20 4.6E-25 155.1 10.8 104 107-217 6-111 (117)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.8 2.2E-19 4.7E-24 148.9 10.2 93 122-217 22-114 (120)
10 cd04818 PA_subtilisin_1 PA_sub 99.8 2.8E-18 6.1E-23 142.6 12.3 107 108-218 2-111 (118)
11 cd04816 PA_SaNapH_like PA_SaNa 99.7 2.2E-17 4.8E-22 138.1 12.3 109 108-219 5-116 (122)
12 cd02130 PA_ScAPY_like PA_ScAPY 99.7 7.9E-17 1.7E-21 134.8 11.8 109 103-219 8-116 (122)
13 COG5540 RING-finger-containing 99.7 1.2E-18 2.5E-23 161.2 0.5 54 295-348 320-373 (374)
14 KOG3920 Uncharacterized conser 99.7 4.9E-17 1.1E-21 137.4 4.3 119 94-216 35-162 (193)
15 cd04817 PA_VapT_like PA_VapT_l 99.6 1.6E-15 3.4E-20 129.2 11.9 101 110-217 26-133 (139)
16 cd02124 PA_PoS1_like PA_PoS1_l 99.6 7.3E-15 1.6E-19 124.0 10.4 90 123-219 34-123 (129)
17 PF02225 PA: PA domain; Inter 99.6 1.1E-15 2.3E-20 122.8 4.8 95 118-215 4-101 (101)
18 PF13639 zf-RING_2: Ring finge 99.6 5.9E-16 1.3E-20 106.2 2.5 44 299-343 1-44 (44)
19 KOG2442 Uncharacterized conser 99.4 4.6E-13 1E-17 131.4 8.4 138 104-251 55-200 (541)
20 cd00538 PA PA: Protease-associ 99.4 9.6E-13 2.1E-17 109.6 8.7 92 126-218 26-119 (126)
21 cd02133 PA_C5a_like PA_C5a_lik 99.4 7.4E-12 1.6E-16 107.6 12.1 100 109-217 15-114 (143)
22 PHA02929 N1R/p28-like protein; 99.3 7E-13 1.5E-17 122.2 4.5 75 272-347 148-227 (238)
23 PF12678 zf-rbx1: RING-H2 zinc 99.3 1.3E-12 2.9E-17 99.4 4.0 46 297-343 18-73 (73)
24 COG5243 HRD1 HRD ubiquitin lig 99.2 3.8E-12 8.3E-17 121.1 4.0 70 274-348 267-346 (491)
25 cd04819 PA_2 PA_2: Protease-as 99.2 1.1E-10 2.3E-15 98.4 10.6 98 117-220 20-122 (127)
26 cd00162 RING RING-finger (Real 99.1 1.2E-10 2.6E-15 78.8 3.7 45 300-346 1-45 (45)
27 cd04815 PA_M28_2 PA_M28_2: Pro 99.0 5E-10 1.1E-14 95.2 6.7 105 110-219 7-128 (134)
28 cd02120 PA_subtilisin_like PA_ 99.0 1.8E-09 3.9E-14 90.2 8.4 84 129-219 36-120 (126)
29 PLN03208 E3 ubiquitin-protein 99.0 3.9E-10 8.4E-15 100.2 4.2 52 295-349 15-81 (193)
30 cd02128 PA_TfR PA_TfR: Proteas 99.0 1.5E-09 3.4E-14 96.3 7.3 110 107-219 16-157 (183)
31 PF13923 zf-C3HC4_2: Zinc fing 98.9 4.7E-10 1E-14 74.8 2.8 39 301-342 1-39 (39)
32 KOG0317 Predicted E3 ubiquitin 98.9 1.7E-09 3.7E-14 100.6 6.9 51 295-349 236-286 (293)
33 PF13920 zf-C3HC4_3: Zinc fing 98.9 6.8E-10 1.5E-14 78.1 3.1 46 298-347 2-48 (50)
34 KOG0823 Predicted E3 ubiquitin 98.9 1.2E-09 2.5E-14 98.9 3.7 52 295-349 44-97 (230)
35 PF12861 zf-Apc11: Anaphase-pr 98.9 1.3E-09 2.7E-14 84.3 3.2 52 297-348 20-83 (85)
36 PF14634 zf-RING_5: zinc-RING 98.8 2.2E-09 4.7E-14 73.5 3.2 44 300-344 1-44 (44)
37 KOG0802 E3 ubiquitin ligase [P 98.8 1.3E-09 2.8E-14 113.0 2.8 54 295-349 288-343 (543)
38 KOG0320 Predicted E3 ubiquitin 98.8 3E-09 6.5E-14 92.4 3.5 57 291-349 124-180 (187)
39 smart00184 RING Ring finger. E 98.8 4.4E-09 9.5E-14 68.5 3.4 39 301-342 1-39 (39)
40 PF00097 zf-C3HC4: Zinc finger 98.8 3E-09 6.6E-14 71.4 2.3 40 301-342 1-41 (41)
41 PHA02926 zinc finger-like prot 98.8 2.6E-09 5.6E-14 96.1 1.9 53 295-347 167-230 (242)
42 PF15227 zf-C3HC4_4: zinc fing 98.7 1.2E-08 2.6E-13 69.2 2.8 39 301-342 1-42 (42)
43 smart00504 Ubox Modified RING 98.6 5.3E-08 1.2E-12 71.4 3.9 46 299-348 2-47 (63)
44 KOG0828 Predicted E3 ubiquitin 98.5 2.5E-08 5.5E-13 98.3 1.8 53 296-348 569-635 (636)
45 smart00744 RINGv The RING-vari 98.5 6.7E-08 1.5E-12 67.7 3.3 43 300-343 1-49 (49)
46 COG5194 APC11 Component of SCF 98.4 1.5E-07 3.3E-12 71.0 3.3 51 298-349 20-83 (88)
47 PF13445 zf-RING_UBOX: RING-ty 98.4 1.4E-07 3.1E-12 64.1 2.5 39 301-340 1-43 (43)
48 TIGR00599 rad18 DNA repair pro 98.4 1.9E-07 4E-12 92.3 3.5 50 295-348 23-72 (397)
49 KOG1734 Predicted RING-contain 98.4 6.3E-08 1.4E-12 89.1 0.1 54 295-348 221-282 (328)
50 KOG1493 Anaphase-promoting com 98.4 1.2E-07 2.6E-12 71.0 1.0 51 297-347 19-81 (84)
51 cd02121 PA_GCPII_like PA_GCPII 98.3 1.2E-06 2.7E-11 80.3 7.6 99 118-219 43-191 (220)
52 COG5219 Uncharacterized conser 98.3 1.6E-07 3.5E-12 98.6 0.4 54 292-347 1463-1523(1525)
53 cd04822 PA_M28_1_3 PA_M28_1_3: 98.2 1E-05 2.2E-10 70.1 10.4 93 118-214 18-131 (151)
54 COG5574 PEX10 RING-finger-cont 98.2 8.2E-07 1.8E-11 81.9 2.6 52 296-350 213-265 (271)
55 KOG0804 Cytoplasmic Zn-finger 98.1 8.9E-07 1.9E-11 86.9 1.6 50 295-347 172-222 (493)
56 cd04814 PA_M28_1 PA_M28_1: Pro 98.1 1.2E-05 2.7E-10 68.8 8.1 71 107-183 10-101 (142)
57 PF11793 FANCL_C: FANCL C-term 98.1 6.9E-07 1.5E-11 67.4 0.1 52 298-349 2-68 (70)
58 TIGR00570 cdk7 CDK-activating 98.1 3.2E-06 7E-11 80.6 4.4 53 298-350 3-57 (309)
59 cd04820 PA_M28_1_1 PA_M28_1_1: 98.1 1.6E-05 3.4E-10 67.8 8.1 65 116-183 18-97 (137)
60 cd02131 PA_hNAALADL2_like PA_h 98.1 7.2E-06 1.6E-10 70.4 5.8 94 117-215 12-137 (153)
61 PF04564 U-box: U-box domain; 98.0 2.3E-06 5E-11 65.0 2.2 49 298-349 4-52 (73)
62 KOG2164 Predicted E3 ubiquitin 98.0 3.1E-06 6.8E-11 84.6 3.0 48 298-348 186-237 (513)
63 KOG4265 Predicted E3 ubiquitin 98.0 4.9E-06 1.1E-10 80.0 3.1 49 296-348 288-337 (349)
64 KOG2177 Predicted E3 ubiquitin 97.9 4.5E-06 9.8E-11 78.2 1.6 46 295-344 10-55 (386)
65 KOG0827 Predicted E3 ubiquitin 97.9 6.3E-06 1.4E-10 79.6 2.2 48 298-346 4-55 (465)
66 KOG2930 SCF ubiquitin ligase, 97.9 8.9E-06 1.9E-10 64.6 2.4 49 297-346 45-107 (114)
67 COG5432 RAD18 RING-finger-cont 97.7 1.6E-05 3.4E-10 74.3 1.7 52 295-350 22-73 (391)
68 KOG4445 Uncharacterized conser 97.7 1.6E-05 3.4E-10 74.6 1.7 58 295-352 112-191 (368)
69 KOG0287 Postreplication repair 97.7 1.6E-05 3.5E-10 75.7 1.7 49 297-349 22-70 (442)
70 KOG0824 Predicted E3 ubiquitin 97.6 3.5E-05 7.5E-10 72.5 2.1 51 298-351 7-57 (324)
71 KOG0825 PHD Zn-finger protein 97.5 1.9E-05 4.1E-10 82.1 -0.3 52 296-348 121-172 (1134)
72 KOG0311 Predicted E3 ubiquitin 97.5 1.8E-05 3.9E-10 75.8 -1.2 54 295-351 40-94 (381)
73 KOG1941 Acetylcholine receptor 97.4 5.7E-05 1.2E-09 73.2 1.5 50 298-347 365-416 (518)
74 KOG1645 RING-finger-containing 97.4 0.00011 2.4E-09 71.7 3.2 49 297-345 3-54 (463)
75 KOG0978 E3 ubiquitin ligase in 97.4 5.1E-05 1.1E-09 79.4 0.9 48 299-349 644-691 (698)
76 KOG1039 Predicted E3 ubiquitin 97.4 0.00011 2.3E-09 71.7 2.8 53 296-348 159-222 (344)
77 KOG3970 Predicted E3 ubiquitin 97.3 0.00019 4.2E-09 64.8 3.8 70 270-350 32-108 (299)
78 KOG4172 Predicted E3 ubiquitin 97.3 8.7E-05 1.9E-09 52.2 0.7 47 296-347 5-54 (62)
79 KOG1428 Inhibitor of type V ad 97.2 0.00029 6.2E-09 77.4 3.6 72 276-348 3465-3545(3738)
80 KOG0801 Predicted E3 ubiquitin 97.2 0.00012 2.7E-09 62.8 0.7 32 295-326 174-205 (205)
81 PF14835 zf-RING_6: zf-RING of 97.0 0.00023 5E-09 52.1 0.5 46 299-349 8-53 (65)
82 KOG1785 Tyrosine kinase negati 96.9 0.00029 6.3E-09 68.6 0.9 50 295-347 366-416 (563)
83 PF11789 zf-Nse: Zinc-finger o 96.9 0.00052 1.1E-08 49.6 1.8 43 297-341 10-53 (57)
84 KOG1814 Predicted E3 ubiquitin 96.8 0.00055 1.2E-08 67.0 1.8 48 296-343 182-236 (445)
85 PHA02862 5L protein; Provision 96.8 0.00089 1.9E-08 56.7 2.6 48 298-349 2-55 (156)
86 PF12906 RINGv: RING-variant d 96.8 0.0011 2.4E-08 45.9 2.5 41 301-342 1-47 (47)
87 PF05883 Baculo_RING: Baculovi 96.7 0.00065 1.4E-08 57.1 1.3 35 298-332 26-66 (134)
88 KOG4159 Predicted E3 ubiquitin 96.7 0.0011 2.4E-08 65.9 3.0 51 295-349 81-131 (398)
89 KOG0827 Predicted E3 ubiquitin 96.4 0.0002 4.3E-09 69.5 -4.1 54 297-351 195-249 (465)
90 PHA02825 LAP/PHD finger-like p 96.4 0.0036 7.8E-08 54.1 3.7 51 295-349 5-61 (162)
91 KOG1571 Predicted E3 ubiquitin 96.3 0.0024 5.2E-08 61.8 2.8 46 295-347 302-347 (355)
92 PF14570 zf-RING_4: RING/Ubox 96.2 0.0029 6.2E-08 43.9 1.7 45 301-346 1-47 (48)
93 KOG0297 TNF receptor-associate 96.1 0.0034 7.5E-08 62.7 2.4 54 295-351 18-71 (391)
94 PF10367 Vps39_2: Vacuolar sor 95.9 0.004 8.8E-08 50.1 1.7 34 295-329 75-108 (109)
95 KOG2879 Predicted E3 ubiquitin 95.6 0.012 2.6E-07 55.0 3.9 52 295-348 236-288 (298)
96 COG5236 Uncharacterized conser 95.3 0.019 4.1E-07 55.3 4.0 62 278-345 42-106 (493)
97 KOG0826 Predicted E3 ubiquitin 95.2 0.0041 8.9E-08 59.4 -0.7 47 295-345 297-344 (357)
98 KOG4185 Predicted E3 ubiquitin 95.2 0.013 2.8E-07 56.2 2.6 49 298-346 3-54 (296)
99 KOG1002 Nucleotide excision re 95.2 0.0093 2E-07 60.3 1.6 52 295-349 533-588 (791)
100 KOG3039 Uncharacterized conser 95.1 0.019 4.1E-07 52.9 3.4 52 297-349 220-272 (303)
101 PHA03096 p28-like protein; Pro 95.0 0.012 2.7E-07 56.1 1.8 46 299-344 179-231 (284)
102 COG5222 Uncharacterized conser 94.9 0.015 3.2E-07 55.0 2.0 47 299-348 275-323 (427)
103 KOG1952 Transcription factor N 94.8 0.016 3.5E-07 61.6 2.2 51 295-345 188-245 (950)
104 KOG2660 Locus-specific chromos 94.7 0.0093 2E-07 57.2 0.1 52 295-349 12-63 (331)
105 PF14447 Prok-RING_4: Prokaryo 94.6 0.021 4.5E-07 40.6 1.7 48 297-350 6-53 (55)
106 KOG1940 Zn-finger protein [Gen 94.5 0.016 3.5E-07 54.8 1.2 45 299-344 159-204 (276)
107 COG5152 Uncharacterized conser 94.3 0.016 3.4E-07 51.7 0.7 44 298-345 196-239 (259)
108 PF08746 zf-RING-like: RING-li 93.8 0.03 6.4E-07 38.0 1.2 42 301-342 1-43 (43)
109 KOG4275 Predicted E3 ubiquitin 93.6 0.02 4.2E-07 54.1 0.0 42 298-347 300-342 (350)
110 cd04821 PA_M28_1_2 PA_M28_1_2: 93.6 0.14 3.1E-06 44.6 5.4 39 144-182 46-103 (157)
111 PF04641 Rtf2: Rtf2 RING-finge 93.5 0.081 1.8E-06 50.0 4.1 52 295-348 110-162 (260)
112 KOG2114 Vacuolar assembly/sort 93.4 0.026 5.5E-07 60.2 0.4 42 298-345 840-881 (933)
113 KOG4692 Predicted E3 ubiquitin 93.3 0.083 1.8E-06 51.1 3.6 49 295-347 419-467 (489)
114 COG5175 MOT2 Transcriptional r 93.2 0.06 1.3E-06 51.8 2.6 54 296-349 12-66 (480)
115 PF14446 Prok-RING_1: Prokaryo 93.0 0.1 2.3E-06 37.0 2.9 34 297-330 4-38 (54)
116 KOG3268 Predicted E3 ubiquitin 92.7 0.071 1.5E-06 46.9 2.1 55 298-352 165-233 (234)
117 KOG1001 Helicase-like transcri 92.6 0.048 1E-06 58.1 1.1 47 299-349 455-502 (674)
118 KOG1813 Predicted E3 ubiquitin 92.5 0.046 1E-06 51.7 0.8 48 297-348 240-287 (313)
119 KOG3053 Uncharacterized conser 92.2 0.063 1.4E-06 49.8 1.2 52 295-346 17-81 (293)
120 KOG2034 Vacuolar sorting prote 92.2 0.066 1.4E-06 57.5 1.5 36 295-331 814-849 (911)
121 PF10272 Tmpp129: Putative tra 91.4 0.22 4.8E-06 49.0 4.1 30 319-348 311-352 (358)
122 PF07800 DUF1644: Protein of u 89.8 0.34 7.4E-06 42.0 3.3 36 298-333 2-47 (162)
123 KOG1609 Protein involved in mR 89.6 0.18 4E-06 48.3 1.8 51 298-348 78-135 (323)
124 COG5183 SSM4 Protein involved 88.6 0.32 7E-06 51.8 2.8 52 295-347 9-66 (1175)
125 KOG3002 Zn finger protein [Gen 88.0 0.3 6.6E-06 47.0 2.0 45 295-347 45-91 (299)
126 KOG2932 E3 ubiquitin ligase in 87.8 0.23 5E-06 47.4 1.1 44 299-347 91-134 (389)
127 KOG3161 Predicted E3 ubiquitin 87.7 0.17 3.8E-06 52.5 0.2 44 298-345 11-55 (861)
128 KOG0298 DEAD box-containing he 86.2 0.24 5.2E-06 55.3 0.3 47 296-345 1151-1197(1394)
129 KOG1829 Uncharacterized conser 86.2 0.25 5.4E-06 51.5 0.3 44 296-343 509-557 (580)
130 KOG0802 E3 ubiquitin ligase [P 85.5 0.45 9.8E-06 49.7 1.9 52 295-354 476-527 (543)
131 KOG1812 Predicted E3 ubiquitin 84.5 0.44 9.5E-06 47.6 1.2 40 296-335 144-184 (384)
132 KOG1100 Predicted E3 ubiquitin 83.8 0.43 9.3E-06 43.6 0.7 40 301-348 161-201 (207)
133 KOG2817 Predicted E3 ubiquitin 82.4 1.1 2.4E-05 44.3 3.0 50 295-344 331-382 (394)
134 KOG0825 PHD Zn-finger protein 81.4 1 2.2E-05 48.1 2.4 53 295-347 93-154 (1134)
135 smart00249 PHD PHD zinc finger 80.9 0.51 1.1E-05 31.2 0.1 31 300-330 1-31 (47)
136 KOG0309 Conserved WD40 repeat- 80.1 1 2.2E-05 47.9 1.9 26 315-341 1044-1069(1081)
137 PF13901 DUF4206: Domain of un 78.2 1.4 3E-05 40.1 2.0 42 297-344 151-197 (202)
138 KOG4362 Transcriptional regula 78.0 0.59 1.3E-05 49.4 -0.5 53 298-353 21-75 (684)
139 KOG3899 Uncharacterized conser 77.4 1.2 2.7E-05 42.2 1.4 30 319-348 325-366 (381)
140 PF03854 zf-P11: P-11 zinc fin 75.2 1.3 2.9E-05 30.5 0.8 33 316-349 15-48 (50)
141 KOG2066 Vacuolar assembly/sort 74.7 1.3 2.8E-05 47.4 0.9 45 296-342 782-830 (846)
142 KOG2195 Transferrin receptor a 74.6 5.3 0.00011 43.0 5.4 37 146-182 183-219 (702)
143 COG5220 TFB3 Cdk activating ki 73.9 1.9 4.1E-05 39.9 1.6 48 297-344 9-61 (314)
144 smart00132 LIM Zinc-binding do 73.2 3.6 7.7E-05 25.9 2.5 38 300-347 1-38 (39)
145 KOG2807 RNA polymerase II tran 73.0 4.4 9.6E-05 39.2 3.9 71 274-345 306-376 (378)
146 KOG3005 GIY-YIG type nuclease 70.3 2.4 5.2E-05 39.9 1.5 51 296-346 180-242 (276)
147 PF05290 Baculo_IE-1: Baculovi 65.8 5.7 0.00012 33.6 2.7 51 297-350 79-135 (140)
148 cd03029 GRX_hybridPRX5 Glutare 64.9 11 0.00023 27.6 3.8 57 149-206 2-59 (72)
149 PF02891 zf-MIZ: MIZ/SP-RING z 64.6 7.5 0.00016 27.0 2.7 41 300-345 4-50 (50)
150 PF09889 DUF2116: Uncharacteri 63.8 14 0.00031 26.8 4.1 29 54-82 20-48 (59)
151 KOG1815 Predicted E3 ubiquitin 61.8 4.8 0.0001 41.0 1.9 38 296-335 68-105 (444)
152 KOG4367 Predicted Zn-finger pr 61.7 4.3 9.3E-05 40.7 1.5 35 297-334 3-37 (699)
153 KOG3800 Predicted E3 ubiquitin 61.6 6.4 0.00014 37.5 2.5 36 314-349 18-53 (300)
154 KOG4739 Uncharacterized protei 59.8 5 0.00011 37.2 1.4 34 299-333 4-37 (233)
155 PF00628 PHD: PHD-finger; Int 59.4 4.2 9.1E-05 27.8 0.7 45 300-344 1-50 (51)
156 TIGR02190 GlrX-dom Glutaredoxi 57.0 16 0.00034 27.5 3.6 59 147-206 7-66 (79)
157 KOG3842 Adaptor protein Pellin 56.9 12 0.00026 36.2 3.5 55 295-349 338-416 (429)
158 KOG4718 Non-SMC (structural ma 55.8 6 0.00013 36.0 1.2 42 298-342 181-222 (235)
159 KOG0269 WD40 repeat-containing 55.8 8.2 0.00018 41.4 2.4 40 300-341 781-820 (839)
160 PF00412 LIM: LIM domain; Int 55.0 10 0.00022 26.4 2.1 40 301-350 1-40 (58)
161 KOG3039 Uncharacterized conser 54.8 8.6 0.00019 35.9 2.1 38 295-335 40-77 (303)
162 PF13717 zinc_ribbon_4: zinc-r 53.9 6.3 0.00014 25.5 0.8 26 299-324 3-36 (36)
163 KOG1729 FYVE finger containing 53.5 3.1 6.7E-05 39.9 -1.0 39 298-336 214-252 (288)
164 KOG3113 Uncharacterized conser 48.7 17 0.00037 34.0 3.1 51 296-349 109-160 (293)
165 PF15435 UNC119_bdg: UNC119-bi 48.1 9.1 0.0002 33.1 1.1 30 44-73 27-56 (197)
166 COG4847 Uncharacterized protei 47.9 13 0.00029 29.4 1.9 33 298-331 6-38 (103)
167 PF10571 UPF0547: Uncharacteri 43.1 12 0.00026 22.5 0.7 22 300-323 2-24 (26)
168 KOG4185 Predicted E3 ubiquitin 41.4 5.9 0.00013 37.8 -1.2 48 298-345 207-265 (296)
169 TIGR00622 ssl1 transcription f 40.9 40 0.00087 27.7 3.8 45 298-343 55-110 (112)
170 PF02009 Rifin_STEVOR: Rifin/s 40.4 3.8 8.2E-05 39.5 -2.7 27 236-262 258-284 (299)
171 TIGR01477 RIFIN variant surfac 40.4 6.1 0.00013 38.8 -1.3 27 236-262 312-338 (353)
172 PF15102 TMEM154: TMEM154 prot 38.9 18 0.00038 31.2 1.4 9 326-334 128-136 (146)
173 KOG1812 Predicted E3 ubiquitin 38.9 15 0.00031 36.9 1.1 45 297-342 305-351 (384)
174 PF07649 C1_3: C1-like domain; 38.9 19 0.0004 22.0 1.2 29 300-328 2-30 (30)
175 cd03027 GRX_DEP Glutaredoxin ( 38.8 55 0.0012 23.8 4.0 55 148-206 1-60 (73)
176 PTZ00046 rifin; Provisional 38.7 6.8 0.00015 38.6 -1.2 27 236-262 317-343 (358)
177 PLN02189 cellulose synthase 38.0 41 0.00088 37.8 4.4 52 296-347 32-87 (1040)
178 PF10083 DUF2321: Uncharacteri 37.8 20 0.00044 31.1 1.6 49 302-354 8-57 (158)
179 PF04423 Rad50_zn_hook: Rad50 37.7 8.4 0.00018 27.0 -0.6 12 338-349 22-33 (54)
180 PRK11200 grxA glutaredoxin 1; 37.7 73 0.0016 23.9 4.7 57 149-206 2-67 (85)
181 PF06024 DUF912: Nucleopolyhed 37.5 12 0.00027 30.0 0.3 15 235-249 63-77 (101)
182 PF05605 zf-Di19: Drought indu 37.4 4.2 9E-05 28.6 -2.2 14 298-311 2-15 (54)
183 cd00350 rubredoxin_like Rubred 37.4 20 0.00042 22.6 1.2 7 338-344 19-25 (33)
184 PF06024 DUF912: Nucleopolyhed 36.0 12 0.00026 30.1 -0.0 28 233-260 64-91 (101)
185 COG5109 Uncharacterized conser 35.5 28 0.0006 33.7 2.3 48 295-342 333-382 (396)
186 PF06906 DUF1272: Protein of u 35.3 57 0.0012 23.4 3.3 48 299-349 6-54 (57)
187 PF04710 Pellino: Pellino; In 35.2 13 0.00027 37.1 0.0 48 295-345 274-337 (416)
188 COG0695 GrxC Glutaredoxin and 35.0 83 0.0018 23.8 4.6 57 149-205 2-61 (80)
189 cd03028 GRX_PICOT_like Glutare 34.9 78 0.0017 24.3 4.5 58 148-206 8-72 (90)
190 PF06844 DUF1244: Protein of u 33.9 24 0.00052 26.1 1.2 13 322-334 11-23 (68)
191 PF04710 Pellino: Pellino; In 33.4 14 0.0003 36.8 0.0 52 297-348 327-402 (416)
192 PF06679 DUF1180: Protein of u 32.5 16 0.00034 32.2 0.1 23 241-263 99-121 (163)
193 PF01363 FYVE: FYVE zinc finge 31.9 21 0.00046 26.0 0.8 36 297-332 8-44 (69)
194 PF14569 zf-UDP: Zinc-binding 31.2 52 0.0011 25.2 2.7 53 296-348 7-63 (80)
195 PF14311 DUF4379: Domain of un 31.2 31 0.00068 24.2 1.5 22 319-342 34-55 (55)
196 TIGR02194 GlrX_NrdH Glutaredox 30.9 69 0.0015 23.2 3.5 53 151-204 2-55 (72)
197 PRK10824 glutaredoxin-4; Provi 30.8 61 0.0013 26.7 3.4 60 147-207 14-80 (115)
198 PRK10638 glutaredoxin 3; Provi 30.4 78 0.0017 23.7 3.8 56 149-205 3-60 (83)
199 PF05393 Hum_adeno_E3A: Human 30.0 14 0.0003 28.9 -0.5 18 239-256 36-53 (94)
200 PF13719 zinc_ribbon_5: zinc-r 29.5 25 0.00053 22.8 0.7 26 299-324 3-36 (37)
201 PF07975 C1_4: TFIIH C1-like d 29.0 36 0.00078 23.9 1.5 42 301-343 2-50 (51)
202 TIGR02189 GlrX-like_plant Glut 28.7 92 0.002 24.5 4.0 60 147-206 7-70 (99)
203 cd02066 GRX_family Glutaredoxi 28.6 82 0.0018 21.8 3.5 55 150-204 2-57 (72)
204 KOG3858 Ephrin, ligand for Eph 28.4 30 0.00065 32.1 1.3 10 4-13 127-136 (233)
205 KOG3842 Adaptor protein Pellin 28.2 24 0.00052 34.2 0.6 44 296-344 288-349 (429)
206 PF01034 Syndecan: Syndecan do 27.3 28 0.0006 25.7 0.7 18 248-265 25-42 (64)
207 PF05715 zf-piccolo: Piccolo Z 27.2 43 0.00093 24.3 1.6 13 337-349 3-15 (61)
208 PLN02195 cellulose synthase A 27.2 79 0.0017 35.4 4.4 58 296-353 4-65 (977)
209 PF14169 YdjO: Cold-inducible 26.2 35 0.00076 24.8 1.0 14 337-350 40-53 (59)
210 PLN02436 cellulose synthase A 25.8 86 0.0019 35.5 4.4 52 296-347 34-89 (1094)
211 cd03418 GRX_GRXb_1_3_like Glut 25.7 77 0.0017 22.8 2.9 58 149-206 1-60 (75)
212 cd00065 FYVE FYVE domain; Zinc 25.5 50 0.0011 22.9 1.8 36 298-333 2-38 (57)
213 KOG2071 mRNA cleavage and poly 24.8 35 0.00077 35.7 1.2 35 296-331 511-556 (579)
214 PF07172 GRP: Glycine rich pro 24.7 51 0.0011 26.2 1.8 14 73-86 6-19 (95)
215 TIGR00365 monothiol glutaredox 24.0 1.2E+02 0.0025 23.8 3.8 60 147-207 11-77 (97)
216 KOG3579 Predicted E3 ubiquitin 23.7 50 0.0011 31.6 1.8 38 297-335 267-306 (352)
217 COG0108 RibB 3,4-dihydroxy-2-b 23.4 1.4E+02 0.003 27.2 4.5 45 162-214 7-51 (203)
218 KOG0824 Predicted E3 ubiquitin 23.3 52 0.0011 31.7 1.9 53 294-349 101-153 (324)
219 KOG2068 MOT2 transcription fac 23.1 77 0.0017 30.9 3.0 52 297-350 248-301 (327)
220 PF13832 zf-HC5HC2H_2: PHD-zin 22.8 71 0.0015 25.5 2.4 31 298-330 55-87 (110)
221 PF09943 DUF2175: Uncharacteri 22.6 63 0.0014 26.1 1.9 32 300-332 4-35 (101)
222 PF00130 C1_1: Phorbol esters/ 22.1 48 0.001 22.6 1.1 35 296-330 9-45 (53)
223 PLN02915 cellulose synthase A 22.0 1.3E+02 0.0028 34.0 4.8 53 295-347 12-68 (1044)
224 PF07282 OrfB_Zn_ribbon: Putat 21.8 1.1E+02 0.0023 22.2 3.0 34 296-329 26-62 (69)
225 KOG3165 Predicted nucleic-acid 21.2 66 0.0014 28.3 1.9 25 312-336 124-150 (195)
226 PF10740 DUF2529: Protein of u 21.1 85 0.0018 27.8 2.6 66 145-210 80-148 (172)
227 COG4306 Uncharacterized protei 20.6 52 0.0011 27.6 1.1 28 322-353 29-56 (160)
228 smart00064 FYVE Protein presen 20.6 80 0.0017 22.8 2.1 37 298-334 10-47 (68)
229 PF06796 NapE: Periplasmic nit 20.5 38 0.00083 24.3 0.3 26 72-97 20-45 (56)
230 PF06750 DiS_P_DiS: Bacterial 20.4 1.6E+02 0.0034 23.2 3.8 39 297-348 32-70 (92)
231 PF05768 DUF836: Glutaredoxin- 20.2 1.9E+02 0.0042 21.6 4.3 54 149-206 1-58 (81)
232 PRK00523 hypothetical protein; 20.2 8.5 0.00018 29.0 -3.2 43 236-282 6-48 (72)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-53 Score=402.56 Aligned_cols=252 Identities=41% Similarity=0.743 Sum_probs=216.3
Q ss_pred ccceecccccccccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEec
Q 018355 100 LSLHFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYN 179 (357)
Q Consensus 100 ~~~~~~~~~a~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~ 179 (357)
.+.+|.+.+|+||+.+..++..|.++.++|.|||+++.+.+........+++||+||+|+|++|+++||++|++|+||||
T Consensus 32 ~S~sf~d~~a~f~~s~~~e~~~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVyn 111 (348)
T KOG4628|consen 32 TSLSFADLPALFGPSLPSEGNLGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYN 111 (348)
T ss_pred ccccccCCccccCCccccccceeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEec
Confidence 67789999999999999999999999999999999998744434456789999999999999999999999999999999
Q ss_pred ccCcccccccccCCCcceeeEEEeehhhhhhhhhhcccCCceeeecC-CCCCcccccceeeeehhhHHHHhhhhccccCC
Q 018355 180 DREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHARGETGECCIFP-ESNRGSWSVLMVSVFSLIVVFALFAVAFITPR 258 (357)
Q Consensus 180 ~~~~~~~~~m~~~~~~i~Ip~v~is~~~G~~L~~~l~~~~~~v~I~p-~~s~~~~~im~IsfI~llvi~~vlli~~~~~r 258 (357)
|.+.++++.|..+..++.|+++||+...|+.|.++.......+...+ ....+.|.++.++++.++++..++++.+++++
T Consensus 112 n~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~~~~~~~~~~~~~~~~ws~~~~~~i~~l~v~~il~~~f~i~~ 191 (348)
T KOG4628|consen 112 NVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRTEFECLLIPLGFDTSPWSILAISLISLLTVVAILVTCFFIYR 191 (348)
T ss_pred CCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcccceeeeeccccccCCcchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 98888899999999999999999999999999997655555555444 78888999999888888888888877776666
Q ss_pred CCCCCCCCCCccccccchhHHhhccccccccCCCCCCCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCC
Q 018355 259 PWRPWPGQNQPLSRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTF 338 (357)
Q Consensus 259 ~r~~~~~~~~~~~~~l~~~~i~~lp~~~~~~~~~~~~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~ 338 (357)
.+...+.++..+.+++.++.++++|...|+..+++... +.|+||||+|++||+||+|||+|.||..|||+||.++++.
T Consensus 192 ~~~~~~~r~~~~~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~ 269 (348)
T KOG4628|consen 192 IRRLIRARNRLRRNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTF 269 (348)
T ss_pred HHHHHHHHhHhhhhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCcc
Confidence 55444333334567899999999999999996665222 7999999999999999999999999999999999999888
Q ss_pred CCcccccCcCCCCCC
Q 018355 339 CPVCKHDMRNNSESN 353 (357)
Q Consensus 339 CPlCR~~i~~~~~~~ 353 (357)
||+||+++......+
T Consensus 270 CPvCK~di~~~~~~~ 284 (348)
T KOG4628|consen 270 CPVCKRDIRTDSGSE 284 (348)
T ss_pred CCCCCCcCCCCCCCC
Confidence 999999997765544
No 2
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.90 E-value=5.7e-23 Score=178.49 Aligned_cols=119 Identities=47% Similarity=0.745 Sum_probs=102.2
Q ss_pred cceecccccccccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecc
Q 018355 101 SLHFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYND 180 (357)
Q Consensus 101 ~~~~~~~~a~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~ 180 (357)
+.+|+..+|.||.+.+++++.|.|+.++|.+||+++++++.......++|+||+||+|+|.+|++|||++||++|||||+
T Consensus 21 ~~~~~~~~A~FG~~~~~~~~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~ 100 (153)
T cd02123 21 TDEFDDLPANFGPIPPGSGLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYND 100 (153)
T ss_pred cceEeeecccCCCCCCCCceEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEEC
Confidence 46788899999999999999999999999999999986431123457899999999999999999999999999999998
Q ss_pred cCcccccccccCCC---cceeeEEEeehhhhhhhhhhcccCCc
Q 018355 181 REKGSLVSMTASHE---GVKVHAIFVSLETGVYLKEHARGETG 220 (357)
Q Consensus 181 ~~~~~~~~m~~~~~---~i~Ip~v~is~~~G~~L~~~l~~~~~ 220 (357)
.+ +.+..|.+++. .++||+++|++++|+.|++.++....
T Consensus 101 ~~-~~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 101 ES-NDLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred CC-CcceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 76 45667776554 68999999999999999998877655
No 3
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.89 E-value=6.4e-23 Score=172.61 Aligned_cols=109 Identities=20% Similarity=0.313 Sum_probs=90.2
Q ss_pred ccccccCCCCeEEEEeeC-CCCCCCCCCCCCCCCC---CCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccc
Q 018355 110 KFAVDVNSSGTCGALHVA-DPADACSPLSNPVASN---DADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS 185 (357)
Q Consensus 110 ~Fg~~~~~~~~~g~l~~~-~p~~aC~~~~~~~~~~---~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~ 185 (357)
+||.++|++.+.|.|+++ ++.+||+++++...+. ....++||||+||+|+|.+|++|||++||++|||||+.+ ++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~-~~ 79 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD-EP 79 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCC-Cc
Confidence 699999999999999877 6789999997632121 135689999999999999999999999999999999875 34
Q ss_pred cccccc--------CCCcceeeEEEeehhhhhhhhhhcccCC
Q 018355 186 LVSMTA--------SHEGVKVHAIFVSLETGVYLKEHARGET 219 (357)
Q Consensus 186 ~~~m~~--------~~~~i~Ip~v~is~~~G~~L~~~l~~~~ 219 (357)
++.|.. ..++++||+++|++++|+.|++.+..+.
T Consensus 80 ~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~ 121 (127)
T cd02125 80 LLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGE 121 (127)
T ss_pred cccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCC
Confidence 556643 2345789999999999999999887654
No 4
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.89 E-value=1.4e-22 Score=170.64 Aligned_cols=109 Identities=26% Similarity=0.465 Sum_probs=92.3
Q ss_pred ccccccccccCCC-CeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcc
Q 018355 106 DLPAKFAVDVNSS-GTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKG 184 (357)
Q Consensus 106 ~~~a~Fg~~~~~~-~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~ 184 (357)
..||+||.+++.. ++.|.|+.++|.+||++..++. ...++|+||+||+|+|.+|+++||++||+|||||||.+++
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~~~p~~gC~~~~~~~----~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~ 77 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVKAKPYRACSEITNAE----EVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGS 77 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEeCCchhcccCCCCcc----ccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCc
Confidence 3689999999874 7899999999999999887532 2468999999999999999999999999999999886542
Q ss_pred -----cccccccCC---CcceeeEEEeehhhhhhhhhhcccC
Q 018355 185 -----SLVSMTASH---EGVKVHAIFVSLETGVYLKEHARGE 218 (357)
Q Consensus 185 -----~~~~m~~~~---~~i~Ip~v~is~~~G~~L~~~l~~~ 218 (357)
.++.|.++. +.++||+++|++++|+.|++.++.+
T Consensus 78 ~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l~~~ 119 (126)
T cd02126 78 SSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKEH 119 (126)
T ss_pred cccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHHHhC
Confidence 355666654 3689999999999999999988764
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.88 E-value=2.9e-22 Score=166.57 Aligned_cols=108 Identities=28% Similarity=0.302 Sum_probs=91.6
Q ss_pred ccccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCc--cccc
Q 018355 110 KFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREK--GSLV 187 (357)
Q Consensus 110 ~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~--~~~~ 187 (357)
.||.+++.+...|.|+.++|.+||++..+.. +.+++|+||+||+|+|.+|+++||++||+||||||+.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~lv~~~p~~gC~~~~~~~----~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~ 76 (118)
T cd02127 1 DFGTIFNTRYKHVPLVPADPLEACEELRNIH----DINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYV 76 (118)
T ss_pred CCCccccccccceEEEECCccccCCCCCCcc----ccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccce
Confidence 4899999999999999999999999876432 247899999999999999999999999999999998653 3445
Q ss_pred ccccC--CCcceeeEEEeehhhhhhhhhhcccCCce
Q 018355 188 SMTAS--HEGVKVHAIFVSLETGVYLKEHARGETGE 221 (357)
Q Consensus 188 ~m~~~--~~~i~Ip~v~is~~~G~~L~~~l~~~~~~ 221 (357)
.|.++ ...++||+++|++++|+.|++.++.+...
T Consensus 77 ~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~ 112 (118)
T cd02127 77 EMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLGLP 112 (118)
T ss_pred EecCCCCCCCceEEEEEecHHHHHHHHHHHHcCCce
Confidence 56665 35689999999999999999988776543
No 6
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.86 E-value=3e-21 Score=164.72 Aligned_cols=111 Identities=21% Similarity=0.302 Sum_probs=91.5
Q ss_pred cccccccccCCCCeEEEEeeC---CCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccC-
Q 018355 107 LPAKFAVDVNSSGTCGALHVA---DPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDRE- 182 (357)
Q Consensus 107 ~~a~Fg~~~~~~~~~g~l~~~---~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~- 182 (357)
.+|+||.+++..++.|.|+.+ ++.+||+++++... ..+..++||||+||+|+|.+|++|||++||++|||||+.+
T Consensus 18 ~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~~-~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~ 96 (138)
T cd02122 18 ESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFPI-PPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGT 96 (138)
T ss_pred cccccCCCCCCCccEEEEecCCCCCCcCCCCCCccccC-CccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCC
Confidence 489999999999999998644 45899999975211 1235789999999999999999999999999999999976
Q ss_pred cccccccccCCCcceeeEEEeehhhhhhhhhhcccCC
Q 018355 183 KGSLVSMTASHEGVKVHAIFVSLETGVYLKEHARGET 219 (357)
Q Consensus 183 ~~~~~~m~~~~~~i~Ip~v~is~~~G~~L~~~l~~~~ 219 (357)
...++.|..+.. ..||+++|++++|+.|++.++.+.
T Consensus 97 ~~~~~~m~~~~~-~~ip~v~Is~~~G~~l~~~l~~G~ 132 (138)
T cd02122 97 GNETVKMSHPGT-GDIVAIMITNPKGMEILELLERGI 132 (138)
T ss_pred CCceeeccCCCC-CcceEEEEcHHHHHHHHHHHHcCC
Confidence 344666655443 489999999999999999887653
No 7
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.84 E-value=1.2e-20 Score=161.34 Aligned_cols=112 Identities=23% Similarity=0.402 Sum_probs=93.5
Q ss_pred ccceecccccccccccCC---CCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEE
Q 018355 100 LSLHFPDLPAKFAVDVNS---SGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAI 176 (357)
Q Consensus 100 ~~~~~~~~~a~Fg~~~~~---~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avI 176 (357)
...+|.+.+|.||..++. .+..+.|+.++|.+||+++++ +..++|+||+||+|+|.+|++|||++||++||
T Consensus 15 ~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~------~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avI 88 (139)
T cd02132 15 EGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTS------KLSGSIALVERGECAFTEKAKIAEAGGASALL 88 (139)
T ss_pred cccEEEeeccccCCCCCCcccCccEEEEEECCcccccCCCCc------ccCCeEEEEECCCCCHHHHHHHHHHcCCcEEE
Confidence 456799999999998765 467889999999999999863 23689999999999999999999999999999
Q ss_pred EecccCcccccccccC----CCcceeeEEEeehhhhhhhhhhcccCC
Q 018355 177 VYNDREKGSLVSMTAS----HEGVKVHAIFVSLETGVYLKEHARGET 219 (357)
Q Consensus 177 v~~~~~~~~~~~m~~~----~~~i~Ip~v~is~~~G~~L~~~l~~~~ 219 (357)
|||+.+. +..|... ...+.||+++|++++|+.|++.++.+.
T Consensus 89 v~n~~~~--~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~ 133 (139)
T cd02132 89 IINDQEE--LYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGK 133 (139)
T ss_pred EEECCCc--ccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCC
Confidence 9998653 4455432 124799999999999999999887654
No 8
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.83 E-value=2.1e-20 Score=155.07 Aligned_cols=104 Identities=28% Similarity=0.326 Sum_probs=83.8
Q ss_pred cccccccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccc
Q 018355 107 LPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSL 186 (357)
Q Consensus 107 ~~a~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~ 186 (357)
..|.||++++.+--. . +.++|.+||++++. .+.+++||||+||+|+|.+|++|||++||++|||||+.+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~-~-~~~~p~~gC~~~~~-----~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~ 78 (117)
T cd04813 6 RYASFSPILNPHLRG-S-YKVSPTDACSLQEH-----AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGL 78 (117)
T ss_pred cccccCCccCccccc-c-ccCCCCCCCCCCCc-----CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccc
Confidence 468899998877322 2 23789999998832 1347899999999999999999999999999999998765555
Q ss_pred ccccc--CCCcceeeEEEeehhhhhhhhhhccc
Q 018355 187 VSMTA--SHEGVKVHAIFVSLETGVYLKEHARG 217 (357)
Q Consensus 187 ~~m~~--~~~~i~Ip~v~is~~~G~~L~~~l~~ 217 (357)
+.|.. +...++||+++|++++|+.|+.++..
T Consensus 79 ~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 79 ITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred eecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 56653 34568999999999999999987654
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.80 E-value=2.2e-19 Score=148.93 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=74.2
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccccccCCCcceeeEE
Q 018355 122 GALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAI 201 (357)
Q Consensus 122 g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v 201 (357)
-.|+.++|..||++.+.... +.+++|+||+||+|+|.+|++|||++||+|||||||.+........++...++||++
T Consensus 22 ~~~~~~~~~~gC~~~~~~~~---~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v 98 (120)
T cd02129 22 LPLRNLTSSVLCSASDVPPG---GLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVA 98 (120)
T ss_pred eeeecCCCcCCCCccccCcc---ccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEE
Confidence 35778899999998764321 247899999999999999999999999999999998653221111222356899999
Q ss_pred Eeehhhhhhhhhhccc
Q 018355 202 FVSLETGVYLKEHARG 217 (357)
Q Consensus 202 ~is~~~G~~L~~~l~~ 217 (357)
||++++|+.|++.+..
T Consensus 99 ~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 99 LLSYKDMLDIQQTFGD 114 (120)
T ss_pred EEeHHHHHHHHHHhcc
Confidence 9999999999998764
No 10
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.77 E-value=2.8e-18 Score=142.63 Aligned_cols=107 Identities=28% Similarity=0.373 Sum_probs=90.9
Q ss_pred ccccccccCC---CCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcc
Q 018355 108 PAKFAVDVNS---SGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKG 184 (357)
Q Consensus 108 ~a~Fg~~~~~---~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~ 184 (357)
+|.||+.++. ..+.|.|+.++|.++|++..... +..++|+|++||+|+|.+|+++|+++||+++||||+.+..
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~----~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~ 77 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAPASNTDGCTAFTNAA----AFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGG 77 (118)
T ss_pred CcccCCcCccccccceeEEEecCCcccccCCCCcCC----CCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCC
Confidence 7999998875 66889999999999999887422 2578999999999999999999999999999999987654
Q ss_pred cccccccCCCcceeeEEEeehhhhhhhhhhcccC
Q 018355 185 SLVSMTASHEGVKVHAIFVSLETGVYLKEHARGE 218 (357)
Q Consensus 185 ~~~~m~~~~~~i~Ip~v~is~~~G~~L~~~l~~~ 218 (357)
..+.|..+.....||+++|++++|+.|+++++.+
T Consensus 78 ~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g 111 (118)
T cd04818 78 APITMGGDDPDITIPAVMISQADGDALKAALAAG 111 (118)
T ss_pred cceeccCCCCCCEEeEEEecHHHHHHHHHHHhcC
Confidence 4455655554578999999999999999998754
No 11
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.74 E-value=2.2e-17 Score=138.12 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=86.3
Q ss_pred ccccccccCCCCeEEEEeeCCC--CCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccc
Q 018355 108 PAKFAVDVNSSGTCGALHVADP--ADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS 185 (357)
Q Consensus 108 ~a~Fg~~~~~~~~~g~l~~~~p--~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~ 185 (357)
...|++..+..+++|.|++.++ .+||++.+.+. .+.+++||||+||+|+|.+|+++||++||+++||||+.+...
T Consensus 5 ~~~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~---~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~ 81 (122)
T cd04816 5 SLSYSPSTPPGGVTAPLVPLDPERPAGCDASDYDG---LDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG 81 (122)
T ss_pred EEeccCCCCCCCcEEEEEEcCCCCccCCCccccCC---CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc
Confidence 3568888888999999988765 58999875432 235789999999999999999999999999999999866322
Q ss_pred ccccccC-CCcceeeEEEeehhhhhhhhhhcccCC
Q 018355 186 LVSMTAS-HEGVKVHAIFVSLETGVYLKEHARGET 219 (357)
Q Consensus 186 ~~~m~~~-~~~i~Ip~v~is~~~G~~L~~~l~~~~ 219 (357)
...+..+ .....||+++|++++|+.|+++++.+.
T Consensus 82 ~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~ 116 (122)
T cd04816 82 TAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAGE 116 (122)
T ss_pred ccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCCC
Confidence 2222222 245789999999999999999987654
No 12
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.71 E-value=7.9e-17 Score=134.78 Aligned_cols=109 Identities=30% Similarity=0.396 Sum_probs=81.6
Q ss_pred eecccccccccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccC
Q 018355 103 HFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDRE 182 (357)
Q Consensus 103 ~~~~~~a~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~ 182 (357)
.|+.....|++. .+.+|+|++. +.+||++.+.+. +..++||||+||+|+|.+|+++||++||++|||||+..
T Consensus 8 ~~~~~~~~~~~~---~~~~g~lv~~-~~~gC~~~~~~~----~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~ 79 (122)
T cd02130 8 AIPTTAFTYSPA---GEVTGPLVVV-PNLGCDAADYPA----SVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVP 79 (122)
T ss_pred EEeeeecccCCC---CCcEEEEEEe-CCCCCCcccCCc----CCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 344444444433 5557999885 457999865431 35789999999999999999999999999999999873
Q ss_pred cccccccccCCCcceeeEEEeehhhhhhhhhhcccCC
Q 018355 183 KGSLVSMTASHEGVKVHAIFVSLETGVYLKEHARGET 219 (357)
Q Consensus 183 ~~~~~~m~~~~~~i~Ip~v~is~~~G~~L~~~l~~~~ 219 (357)
......+.++..+..||+++|++++|+.|++.++.++
T Consensus 80 ~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~ 116 (122)
T cd02130 80 AGGLSGTLGEPSGPYVPTVGISQEDGKALVAALANGG 116 (122)
T ss_pred CcccccccCCCCCCEeeEEEecHHHHHHHHHHHhcCC
Confidence 2322223334445789999999999999999887653
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-18 Score=161.19 Aligned_cols=54 Identities=39% Similarity=1.042 Sum_probs=49.0
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...+.+|+|||++|-++|++++|||.|.||..|+++|+.-++..||+||.++++
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 344579999999999999999999999999999999999766679999999876
No 14
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.66 E-value=4.9e-17 Score=137.41 Aligned_cols=119 Identities=29% Similarity=0.421 Sum_probs=96.7
Q ss_pred eEEEcc--ccceecccccc-cccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHc
Q 018355 94 TLVWKP--LSLHFPDLPAK-FAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAA 170 (357)
Q Consensus 94 ~vv~~~--~~~~~~~~~a~-Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~a 170 (357)
|.|+.| ..++|...+|. ||..++..--.-.|+.++|..||+.+.|.-.. .+.|+|++||+|+|..|.+++|++
T Consensus 35 F~vlsP~~l~Yty~~~pAkdfG~~F~~r~e~~~lV~adPp~aC~elrN~~f~----~d~vaL~eRGeCSFl~Ktl~~e~a 110 (193)
T KOG3920|consen 35 FTVLSPYTLAYTYQMKPAKDFGVHFPDRFENLELVLADPPHACEELRNEIFA----PDSVALMERGECSFLVKTLNGEKA 110 (193)
T ss_pred EEecCcccEEEEEEecchhhhccccchhhcCcceeecCChhHHHHHhhcccC----CCcEEEEecCCceeeehhhhhhhc
Confidence 446677 67788888887 99988876555578999999999999875543 458999999999999999999999
Q ss_pred CCcEEEEecccCccc----ccccccCC--CcceeeEEEeehhhhhhhhhhcc
Q 018355 171 GYRAAIVYNDREKGS----LVSMTASH--EGVKVHAIFVSLETGVYLKEHAR 216 (357)
Q Consensus 171 GA~avIv~~~~~~~~----~~~m~~~~--~~i~Ip~v~is~~~G~~L~~~l~ 216 (357)
||.|+||.|+..++. .+.|..|+ .+.+||++++-..+|..+..-++
T Consensus 111 Ga~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 111 GATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLK 162 (193)
T ss_pred CceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHH
Confidence 999999999865543 45676553 35799999999999988776553
No 15
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.65 E-value=1.6e-15 Score=129.20 Aligned_cols=101 Identities=21% Similarity=0.197 Sum_probs=75.9
Q ss_pred ccccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCC-----hHHHHHHHHHcCCcEEEEecccCcc
Q 018355 110 KFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCI-----FEDKIRNAQAAGYRAAIVYNDREKG 184 (357)
Q Consensus 110 ~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~Cs-----F~~K~~~Aq~aGA~avIv~~~~~~~ 184 (357)
.|-...+...++|.|+..... +|+-.. .+..++|+||+||+|+ |.+|+++||++||+|||||||.++.
T Consensus 26 ~~~s~~~~g~~tg~lv~~g~~-g~d~~~------~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~ 98 (139)
T cd04817 26 SYASMPVTGSATGSLYYCGTS-GGSYIC------GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALA 98 (139)
T ss_pred cccccccCCcceEEEEEccCC-CccccC------CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCC
Confidence 344455566788888876653 473211 1246899999999999 9999999999999999999997433
Q ss_pred c-ccccccCCC-cceeeEEEeehhhhhhhhhhccc
Q 018355 185 S-LVSMTASHE-GVKVHAIFVSLETGVYLKEHARG 217 (357)
Q Consensus 185 ~-~~~m~~~~~-~i~Ip~v~is~~~G~~L~~~l~~ 217 (357)
. +..+.++.. .++||+++|++++|+.|++.+..
T Consensus 99 g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~~ 133 (139)
T cd04817 99 GLQNPFLVDTNNDTTIPSVSVDRADGQALLAALGQ 133 (139)
T ss_pred CcccccccCCCCCceEeEEEeeHHHHHHHHHHhcC
Confidence 3 223434433 68999999999999999998754
No 16
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.59 E-value=7.3e-15 Score=124.02 Aligned_cols=90 Identities=26% Similarity=0.381 Sum_probs=68.4
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccccccCCCcceeeEEE
Q 018355 123 ALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIF 202 (357)
Q Consensus 123 ~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~ 202 (357)
.+..+++.+||++++... + +.+++||||+||+|+|.+|++|||++||++|||||+.+. . ..+...+. ..+|.++
T Consensus 34 ~~~~~~~~~gC~~~~~~~-~--~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~-~-~~~~~~~~-~~~~~~~ 107 (129)
T cd02124 34 SLDTSVADDACQPLPDDT-P--DLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSG-P-TDQVGSDA-DSIIAAV 107 (129)
T ss_pred ecccCCCcccCcCCCccc-c--cccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCC-c-ccccCCCC-cceeeEE
Confidence 344567889999986432 2 347899999999999999999999999999999998753 2 23333332 3456666
Q ss_pred eehhhhhhhhhhcccCC
Q 018355 203 VSLETGVYLKEHARGET 219 (357)
Q Consensus 203 is~~~G~~L~~~l~~~~ 219 (357)
+ +++|+.|++.++.+.
T Consensus 108 ~-~~~G~~l~~~l~~G~ 123 (129)
T cd02124 108 T-PEDGEAWIDALAAGS 123 (129)
T ss_pred e-HHHHHHHHHHHhcCC
Confidence 6 999999999887653
No 17
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.59 E-value=1.1e-15 Score=122.84 Aligned_cols=95 Identities=28% Similarity=0.469 Sum_probs=65.5
Q ss_pred CCeEEEEeeCCCC---CCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccccccCCC
Q 018355 118 SGTCGALHVADPA---DACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHE 194 (357)
Q Consensus 118 ~~~~g~l~~~~p~---~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~~m~~~~~ 194 (357)
....|+|+.+.+. ..|.+.+.. ....+++|||++||+|+|.+|+++||++||+||||+|+.+.........+..
T Consensus 4 ~~~~~~lV~~~~~~~~~~~~~~~~~---~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~ 80 (101)
T PF02225_consen 4 GTVTGPLVPAGNGIDEGDCCPSDYN---GSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPD 80 (101)
T ss_dssp EEEEEEEEEETTEEECCHHHHHHTS---TSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTT
T ss_pred CCEEEEEEEecCCCCcccccccccC---CccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCC
Confidence 4466778744332 233332211 2235789999999999999999999999999999999322222222333445
Q ss_pred cceeeEEEeehhhhhhhhhhc
Q 018355 195 GVKVHAIFVSLETGVYLKEHA 215 (357)
Q Consensus 195 ~i~Ip~v~is~~~G~~L~~~l 215 (357)
...||+++|++++|+.|++++
T Consensus 81 ~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 81 PIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp STBSEEEEE-HHHHHHHHHHH
T ss_pred CcEEEEEEeCHHHHhhhhccC
Confidence 589999999999999999863
No 18
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.58 E-value=5.9e-16 Score=106.21 Aligned_cols=44 Identities=50% Similarity=1.241 Sum_probs=40.1
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCccc
Q 018355 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 343 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR 343 (357)
++|+||+++|..++.+..|+|+|.||.+||.+|+++++ +||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-SCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-B-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-cCCccC
Confidence 57999999999999999999999999999999999976 699998
No 19
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.41 E-value=4.6e-13 Score=131.39 Aligned_cols=138 Identities=25% Similarity=0.409 Sum_probs=94.6
Q ss_pred ecccccccccccCCCCeEE---EEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecc
Q 018355 104 FPDLPAKFAVDVNSSGTCG---ALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYND 180 (357)
Q Consensus 104 ~~~~~a~Fg~~~~~~~~~g---~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~ 180 (357)
+....+.||..++...-.. .+...+|.|-|++.+++- ++++++|.||+|+|.+|+++||++||.|++|.||
T Consensus 55 ~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~kl------~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~ 128 (541)
T KOG2442|consen 55 FAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSKL------SGKVALVFRGNCSFTEKAKLAQAAGASALLIINN 128 (541)
T ss_pred hhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCccc------cceeEEEecccceeehhhhhhhhcCceEEEEEcC
Confidence 4456788988655433222 233568999999876432 5699999999999999999999999999999998
Q ss_pred cCcccccccccC----CCcceeeEEEeehhhhhhhhhhccc-CCceeeecCCCCCcccccceeeeehhhHHHHhhh
Q 018355 181 REKGSLVSMTAS----HEGVKVHAIFVSLETGVYLKEHARG-ETGECCIFPESNRGSWSVLMVSVFSLIVVFALFA 251 (357)
Q Consensus 181 ~~~~~~~~m~~~----~~~i~Ip~v~is~~~G~~L~~~l~~-~~~~v~I~p~~s~~~~~im~IsfI~llvi~~vll 251 (357)
.. ++.-|... ..+++||++||++++|+.+.+.... .++++.+..+.. +-..+.+.|+.++.+..+.+
T Consensus 129 ~~--d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaPk~--P~vD~~~v~iwlmAVgTVa~ 200 (541)
T KOG2442|consen 129 KK--DLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAPKR--PAVDYAMVFIWLMAVGTVAC 200 (541)
T ss_pred ch--hhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECCCC--CCccHHHHHHHHHHHhHhhc
Confidence 65 33334332 2358999999999999999985443 345555544433 22334444555555555443
No 20
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.40 E-value=9.6e-13 Score=109.62 Aligned_cols=92 Identities=26% Similarity=0.371 Sum_probs=69.2
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccc-cccccC-CCcceeeEEEe
Q 018355 126 VADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSL-VSMTAS-HEGVKVHAIFV 203 (357)
Q Consensus 126 ~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~-~~m~~~-~~~i~Ip~v~i 203 (357)
...+.++|++... ........++|+|++||+|+|.+|+++||++||+++||+|+.+.... ..+.++ .....||+++|
T Consensus 26 ~~~~~~~C~~~~~-~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~i 104 (126)
T cd00538 26 VAGPLVGCGYGTT-DDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGI 104 (126)
T ss_pred cccceEEEecCcc-cccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEe
Confidence 3457789988752 11112357999999999999999999999999999999998753211 112111 23468999999
Q ss_pred ehhhhhhhhhhcccC
Q 018355 204 SLETGVYLKEHARGE 218 (357)
Q Consensus 204 s~~~G~~L~~~l~~~ 218 (357)
++++|+.|+++++.+
T Consensus 105 s~~~g~~l~~~~~~~ 119 (126)
T cd00538 105 SYADGEALLSLLEAG 119 (126)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988754
No 21
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.36 E-value=7.4e-12 Score=107.57 Aligned_cols=100 Identities=28% Similarity=0.283 Sum_probs=74.1
Q ss_pred cccccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccc
Q 018355 109 AKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVS 188 (357)
Q Consensus 109 a~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~~ 188 (357)
..++.+.+.....+.|++... |.+-+.. ..+.+++|+|++||+|+|.+|+++||++||++|||||+.+.. ..
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g~---g~~~d~~---~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~--~~ 86 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAGL---GTPEDFE---GKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL--IP 86 (143)
T ss_pred ccCCCcCCCCCcEEEEEEccC---CchhccC---CCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc--cc
Confidence 456666666778888886532 2222111 123578999999999999999999999999999999987532 22
Q ss_pred cccCCCcceeeEEEeehhhhhhhhhhccc
Q 018355 189 MTASHEGVKVHAIFVSLETGVYLKEHARG 217 (357)
Q Consensus 189 m~~~~~~i~Ip~v~is~~~G~~L~~~l~~ 217 (357)
+..+. ...||+++|++++|+.|+++++.
T Consensus 87 ~~~~~-~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 87 GTLGE-AVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred ccCCC-CCeEeEEEecHHHHHHHHHHHhC
Confidence 32222 35799999999999999998876
No 22
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.34 E-value=7e-13 Score=122.18 Aligned_cols=75 Identities=27% Similarity=0.582 Sum_probs=55.4
Q ss_pred cccchhHHhhccccccccCCCCCCCCCcccccccccccCCC----ceEE-eCCCCccchhHHHHHHhcCCCCCCcccccC
Q 018355 272 RRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGE----KLKV-LSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (357)
Q Consensus 272 ~~l~~~~i~~lp~~~~~~~~~~~~~~~~~CaICLe~f~~~~----~vr~-LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (357)
.+..+..++.+|....+-........+.+|+||++++.+.+ .+.+ ++|+|.||.+||.+|+..+. +||+||..+
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-tCPlCR~~~ 226 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-TCPVCRTPF 226 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-CCCCCCCEe
Confidence 34467777888877654332223455789999999987653 1234 46999999999999999866 599999887
Q ss_pred c
Q 018355 347 R 347 (357)
Q Consensus 347 ~ 347 (357)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 5
No 23
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.31 E-value=1.3e-12 Score=99.38 Aligned_cols=46 Identities=35% Similarity=0.859 Sum_probs=36.4
Q ss_pred CCcccccccccccCC----------CceEEeCCCCccchhHHHHHHhcCCCCCCccc
Q 018355 297 GGETCAICLEDYQDG----------EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 343 (357)
Q Consensus 297 ~~~~CaICLe~f~~~----------~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR 343 (357)
.++.|+||+++|.+. -.+...+|+|.||..||.+||+.++ +||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 356799999999322 2456668999999999999999987 599998
No 24
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.8e-12 Score=121.06 Aligned_cols=70 Identities=24% Similarity=0.636 Sum_probs=53.2
Q ss_pred cchhHHhhccccccccCCCCCCCCCccccccccc-ccCCC---------ceEEeCCCCccchhHHHHHHhcCCCCCCccc
Q 018355 274 LDSKVVEALPCFLFSSASSSQCHGGETCAICLED-YQDGE---------KLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 343 (357)
Q Consensus 274 l~~~~i~~lp~~~~~~~~~~~~~~~~~CaICLe~-f~~~~---------~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR 343 (357)
..++.-+.+|+...++. ..++..|.||+|+ |+.+. +-+.|||||+||-+|++.|++++++ ||+||
T Consensus 267 ~~kdl~~~~~t~t~eql----~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQT-CPICr 341 (491)
T COG5243 267 ATKDLNAMYPTATEEQL----TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQT-CPICR 341 (491)
T ss_pred HhhHHHhhcchhhhhhh----cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccC-CCccc
Confidence 34455555666655553 3457799999999 55541 3478999999999999999999995 99999
Q ss_pred ccCcC
Q 018355 344 HDMRN 348 (357)
Q Consensus 344 ~~i~~ 348 (357)
+++.-
T Consensus 342 ~p~if 346 (491)
T COG5243 342 RPVIF 346 (491)
T ss_pred Ccccc
Confidence 99543
No 25
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.21 E-value=1.1e-10 Score=98.42 Aligned_cols=98 Identities=20% Similarity=0.045 Sum_probs=70.2
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCC--ChHHHHHHHHHcCCcEEEEecccCccccccc-ccC-
Q 018355 117 SSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQC--IFEDKIRNAQAAGYRAAIVYNDREKGSLVSM-TAS- 192 (357)
Q Consensus 117 ~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~C--sF~~K~~~Aq~aGA~avIv~~~~~~~~~~~m-~~~- 192 (357)
.....|+|++... | .+-+.. ..+..++||||+||.| +|.+|+++|+++||+||||||+.++....+. .+.
T Consensus 20 ~~~~~~~lV~~g~--G-~~~d~~---~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 20 SGEAKGEPVDAGY--G-LPKDFD---GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CCCeeEEEEEeCC--C-CHHHcC---CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 3456888887542 2 111111 1235789999999999 9999999999999999999987654322111 111
Q ss_pred -CCcceeeEEEeehhhhhhhhhhcccCCc
Q 018355 193 -HEGVKVHAIFVSLETGVYLKEHARGETG 220 (357)
Q Consensus 193 -~~~i~Ip~v~is~~~G~~L~~~l~~~~~ 220 (357)
.....||++.|+.+||+.|+++++.++.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 2336899999999999999999887553
No 26
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.07 E-value=1.2e-10 Score=78.81 Aligned_cols=45 Identities=40% Similarity=1.038 Sum_probs=37.5
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccC
Q 018355 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (357)
+|+||++.+ .+.+..++|+|.||..|++.|++..+..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 345666679999999999999998444699999764
No 27
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.03 E-value=5e-10 Score=95.24 Aligned_cols=105 Identities=17% Similarity=0.107 Sum_probs=75.0
Q ss_pred ccccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCC------ChHHH-------HHHHHHcCCcEEE
Q 018355 110 KFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQC------IFEDK-------IRNAQAAGYRAAI 176 (357)
Q Consensus 110 ~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~C------sF~~K-------~~~Aq~aGA~avI 176 (357)
.|++..++.+++|+++.....+ .+.. .+..+..+|||||+||.| +|..| ..+|+++||.|+|
T Consensus 7 ~~s~~t~~~gvta~vv~v~~~~---~~~~--~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avI 81 (134)
T cd04815 7 GGSVATPPEGITAEVVVVKSFD---ELKA--APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVL 81 (134)
T ss_pred CCCCCCCCCCcEEEEEEECCHH---HHHh--cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEE
Confidence 3555566677999988655322 2211 111235799999999999 99999 7999999999999
Q ss_pred EecccCccc--c-cccccC-CCcceeeEEEeehhhhhhhhhhcccCC
Q 018355 177 VYNDREKGS--L-VSMTAS-HEGVKVHAIFVSLETGVYLKEHARGET 219 (357)
Q Consensus 177 v~~~~~~~~--~-~~m~~~-~~~i~Ip~v~is~~~G~~L~~~l~~~~ 219 (357)
|+|+.+... . ..+.+. +....||++.|+.++|+.|.++++.++
T Consensus 82 v~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~ 128 (134)
T cd04815 82 IRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDADMLERLAARGK 128 (134)
T ss_pred EEecCcccCCCCcCCccccCCCCCCCCEEEechhcHHHHHHHHhCCC
Confidence 999753321 1 122222 334689999999999999999887764
No 28
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.98 E-value=1.8e-09 Score=90.25 Aligned_cols=84 Identities=25% Similarity=0.225 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEcCCC-ChHHHHHHHHHcCCcEEEEecccCcccccccccCCCcceeeEEEeehhh
Q 018355 129 PADACSPLSNPVASNDADHINFVLIVRGQC-IFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLET 207 (357)
Q Consensus 129 p~~aC~~~~~~~~~~~~~~~~I~LV~RG~C-sF~~K~~~Aq~aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~is~~~ 207 (357)
....|++..... ....++|||.+||.| +|.+|+.+|+++||.++|++|+..+. ..+... ...||+++|++++
T Consensus 36 ~~~~C~~~~~~~---~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~--~~~~~~--~~~iP~v~I~~~~ 108 (126)
T cd02120 36 DASLCLPGSLDP---SKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDG--LDVVAD--AHVLPAVHVDYED 108 (126)
T ss_pred ccccCCCCCCCh---hhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCC--ceeccc--ccccceEEECHHH
Confidence 346898765332 235789999999999 99999999999999999999986532 222221 3579999999999
Q ss_pred hhhhhhhcccCC
Q 018355 208 GVYLKEHARGET 219 (357)
Q Consensus 208 G~~L~~~l~~~~ 219 (357)
|+.|+++++...
T Consensus 109 g~~l~~y~~~~~ 120 (126)
T cd02120 109 GTAILSYINSTS 120 (126)
T ss_pred HHHHHHHHHcCC
Confidence 999999987653
No 29
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.98 E-value=3.9e-10 Score=100.19 Aligned_cols=52 Identities=35% Similarity=0.731 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc---------------CCCCCCcccccCcCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---------------WGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---------------~~~~CPlCR~~i~~~ 349 (357)
..+..+|+||++.+++. .+++|||.||..||..|+.. ++..||+||.++...
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 34567999999998664 56899999999999999863 124699999998653
No 30
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.96 E-value=1.5e-09 Score=96.34 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=75.1
Q ss_pred cccccccccCCCCeEEEEeeCCCCCCCCCCCCC--CCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcc
Q 018355 107 LPAKFAVDVNSSGTCGALHVADPADACSPLSNP--VASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKG 184 (357)
Q Consensus 107 ~~a~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~--~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~ 184 (357)
.+..|.+--+...++|.|+++.. | .+.+.. .....+..++||||+||+|+|.+|+++||++||+|||||+|..+.
T Consensus 16 ~~~~f~~~s~~G~v~g~lVyvn~--G-~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~ 92 (183)
T cd02128 16 NPGGYVAYSAAGTVTGKLVYANY--G-RKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADF 92 (183)
T ss_pred ccccccCCCCCCceEEEEEEcCC--C-CHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHc
Confidence 34456665566778999988732 3 222111 001124578999999999999999999999999999999984221
Q ss_pred ccc----------c-cccC----------------C---CcceeeEEEeehhhhhhhhhhcccCC
Q 018355 185 SLV----------S-MTAS----------------H---EGVKVHAIFVSLETGVYLKEHARGET 219 (357)
Q Consensus 185 ~~~----------~-m~~~----------------~---~~i~Ip~v~is~~~G~~L~~~l~~~~ 219 (357)
... . ..+| . .--.||++-|+.++++.|++.+.+..
T Consensus 93 ~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~~ 157 (183)
T cd02128 93 PIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGPV 157 (183)
T ss_pred CcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCCC
Confidence 100 0 0111 0 11479999999999999999887643
No 31
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.95 E-value=4.7e-10 Score=74.77 Aligned_cols=39 Identities=41% Similarity=1.048 Sum_probs=33.1
Q ss_pred cccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcc
Q 018355 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (357)
Q Consensus 301 CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (357)
|+||++++.+ .+..++|||.|+.+||.+|++.+ ..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~-~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKN-PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCT-SB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCc-CCCcCC
Confidence 8999998777 56789999999999999999995 569998
No 32
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.7e-09 Score=100.56 Aligned_cols=51 Identities=25% Similarity=0.710 Sum_probs=43.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
......|.+|||..+.. .-+||||+||..||..|+..+. .||+||....+.
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHcccc-CCCcccccCCCc
Confidence 44567999999997654 5789999999999999999977 599999988664
No 33
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.92 E-value=6.8e-10 Score=78.10 Aligned_cols=46 Identities=33% Similarity=0.867 Sum_probs=38.2
Q ss_pred CcccccccccccCCCceEEeCCCCc-cchhHHHHHHhcCCCCCCcccccCc
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
+..|.||+++... +..+||||. |+.+|++.|++... .||+||++|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKK-KCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTS-BBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCC-CCCcCChhhc
Confidence 4689999998554 678899999 99999999999766 5999999885
No 34
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-09 Score=98.87 Aligned_cols=52 Identities=35% Similarity=0.661 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC--CCCCCcccccCcCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW--GTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~--~~~CPlCR~~i~~~ 349 (357)
.....+|.||||.-++. .++.|||+||.-||.+||+.+ +..||+||..|..+
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 45577999999986654 577899999999999999995 34699999988764
No 35
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.88 E-value=1.3e-09 Score=84.30 Aligned_cols=52 Identities=29% Similarity=0.794 Sum_probs=40.2
Q ss_pred CCccccccccccc--------CCCc--eEEeCCCCccchhHHHHHHhcC--CCCCCcccccCcC
Q 018355 297 GGETCAICLEDYQ--------DGEK--LKVLSCKHEFHASCVDSWLTKW--GTFCPVCKHDMRN 348 (357)
Q Consensus 297 ~~~~CaICLe~f~--------~~~~--vr~LpC~H~FH~~CI~~Wl~~~--~~~CPlCR~~i~~ 348 (357)
.++.|.||...|+ +||. +..-.|+|.||..||.+|+.+. +..||+||++..-
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3789999999987 3433 3333599999999999999974 4569999997643
No 36
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.84 E-value=2.2e-09 Score=73.54 Aligned_cols=44 Identities=30% Similarity=0.823 Sum_probs=37.9
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccc
Q 018355 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH 344 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~ 344 (357)
.|.||+++|.+.+..++|+|||+|+.+|+.... .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999777788999999999999999988 33446999985
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.3e-09 Score=112.96 Aligned_cols=54 Identities=39% Similarity=0.888 Sum_probs=46.5
Q ss_pred CCCCcccccccccccCCCc--eEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 295 CHGGETCAICLEDYQDGEK--LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~--vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
....+.|+||+|++..+++ .+.|||+|+||..|+..|+++.++ ||+||..+...
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qt-CP~CR~~~~~~ 343 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQT-CPTCRTVLYDY 343 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCc-CCcchhhhhcc
Confidence 3457899999999999866 789999999999999999999774 99999955443
No 38
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3e-09 Score=92.41 Aligned_cols=57 Identities=23% Similarity=0.607 Sum_probs=45.4
Q ss_pred CCCCCCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 291 SSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 291 ~~~~~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.......-..|+|||+.|.+... .-+.|||+||++||..-+....+ ||+||..|..+
T Consensus 124 ~~~~~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~-CP~C~kkIt~k 180 (187)
T KOG0320|consen 124 DPLRKEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNK-CPTCRKKITHK 180 (187)
T ss_pred cccccccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCC-CCCcccccchh
Confidence 33445566799999999888533 23679999999999999998774 99999888654
No 39
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.80 E-value=4.4e-09 Score=68.55 Aligned_cols=39 Identities=44% Similarity=1.054 Sum_probs=33.1
Q ss_pred cccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcc
Q 018355 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (357)
Q Consensus 301 CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (357)
|+||++. .+....++|+|.||.+|++.|++..+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998 34578899999999999999999544469998
No 40
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.78 E-value=3e-09 Score=71.45 Aligned_cols=40 Identities=40% Similarity=1.074 Sum_probs=34.5
Q ss_pred cccccccccCCCceEEeCCCCccchhHHHHHHh-cCCCCCCcc
Q 018355 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLT-KWGTFCPVC 342 (357)
Q Consensus 301 CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~-~~~~~CPlC 342 (357)
|+||++.+.+. ++.++|+|.|+..||.+|++ .....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998775 36889999999999999999 445569998
No 41
>PHA02926 zinc finger-like protein; Provisional
Probab=98.76 E-value=2.6e-09 Score=96.08 Aligned_cols=53 Identities=28% Similarity=0.757 Sum_probs=39.7
Q ss_pred CCCCcccccccccccCC----C-ceEEe-CCCCccchhHHHHHHhcC-----CCCCCcccccCc
Q 018355 295 CHGGETCAICLEDYQDG----E-KLKVL-SCKHEFHASCVDSWLTKW-----GTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~----~-~vr~L-pC~H~FH~~CI~~Wl~~~-----~~~CPlCR~~i~ 347 (357)
.+.+.+|+||||..-+. + .--+| +|+|.||..||+.|...+ ...||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45578999999986322 1 22345 599999999999999864 235999998764
No 42
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.69 E-value=1.2e-08 Score=69.17 Aligned_cols=39 Identities=36% Similarity=0.855 Sum_probs=30.7
Q ss_pred cccccccccCCCceEEeCCCCccchhHHHHHHhcCC---CCCCcc
Q 018355 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG---TFCPVC 342 (357)
Q Consensus 301 CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~---~~CPlC 342 (357)
|+||++-|++. ..|+|||.|+..||..|.+..+ ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999886 6799999999999999998863 359988
No 43
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.58 E-value=5.3e-08 Score=71.37 Aligned_cols=46 Identities=24% Similarity=0.493 Sum_probs=39.6
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..|+||++.+++. .++||||+|.++||.+|++.+. .||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~-~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHG-TDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCC-CCCCCcCCCCh
Confidence 3699999998874 5679999999999999999865 59999988854
No 44
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.5e-08 Score=98.31 Aligned_cols=53 Identities=25% Similarity=0.735 Sum_probs=41.9
Q ss_pred CCCcccccccccccCC---Cc-----------eEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 296 HGGETCAICLEDYQDG---EK-----------LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~---~~-----------vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
....+|+||+.+.+.. .. ...+||+|+||..|+.+|....+..||+||+++++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3456999999986432 11 33569999999999999999777679999999874
No 45
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.54 E-value=6.7e-08 Score=67.68 Aligned_cols=43 Identities=28% Similarity=0.819 Sum_probs=34.0
Q ss_pred ccccccccccCCCceEEeCCC-----CccchhHHHHHHhcC-CCCCCccc
Q 018355 300 TCAICLEDYQDGEKLKVLSCK-----HEFHASCVDSWLTKW-GTFCPVCK 343 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~-----H~FH~~CI~~Wl~~~-~~~CPlCR 343 (357)
.|.||+++ ..++...++||. |.+|.+|+++|+..+ +.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999994 344455589984 999999999999886 34699995
No 46
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.44 E-value=1.5e-07 Score=71.04 Aligned_cols=51 Identities=31% Similarity=0.765 Sum_probs=37.8
Q ss_pred Ccccccccccc-----------cCCCceEEe--CCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 298 GETCAICLEDY-----------QDGEKLKVL--SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f-----------~~~~~vr~L--pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
-+.|+||...| ..+++..+. -|+|.||..||..||.+++ .||+||+...-.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-~CPld~q~w~~~ 83 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-VCPLDRQTWVLA 83 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-CCCCCCceeEEe
Confidence 35666666554 456655444 4999999999999999976 599999876543
No 47
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.42 E-value=1.4e-07 Score=64.07 Aligned_cols=39 Identities=36% Similarity=0.725 Sum_probs=23.1
Q ss_pred cccccccccCCC-ceEEeCCCCccchhHHHHHHhcC---CCCCC
Q 018355 301 CAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLTKW---GTFCP 340 (357)
Q Consensus 301 CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~~~---~~~CP 340 (357)
|+||+| |...+ .-.+|+|||+|.++||+.++.+. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86544 45789999999999999999974 33577
No 48
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=1.9e-07 Score=92.35 Aligned_cols=50 Identities=24% Similarity=0.603 Sum_probs=42.4
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
......|+||++.|... .+++|+|.||..||..|+.... .||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~-~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQP-KCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCC-CCCCCCCcccc
Confidence 45567999999998764 4689999999999999998865 59999998764
No 49
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6.3e-08 Score=89.13 Aligned_cols=54 Identities=28% Similarity=0.607 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCC-------ceEEeCCCCccchhHHHHHHhcC-CCCCCcccccCcC
Q 018355 295 CHGGETCAICLEDYQDGE-------KLKVLSCKHEFHASCVDSWLTKW-GTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~-------~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPlCR~~i~~ 348 (357)
..++..|+||=..+...+ +.-.|.|+|+||+.||+-|.... +.+||.||..+..
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 456779999998876554 67899999999999999998773 2359999987753
No 50
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.2e-07 Score=71.03 Aligned_cols=51 Identities=33% Similarity=0.847 Sum_probs=38.5
Q ss_pred CCcccccccccccC--------CCceEEe--CCCCccchhHHHHHHhcC--CCCCCcccccCc
Q 018355 297 GGETCAICLEDYQD--------GEKLKVL--SCKHEFHASCVDSWLTKW--GTFCPVCKHDMR 347 (357)
Q Consensus 297 ~~~~CaICLe~f~~--------~~~vr~L--pC~H~FH~~CI~~Wl~~~--~~~CPlCR~~i~ 347 (357)
.+++|-||.-.|+. ||..-.+ .|.|.||..||.+|+... +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45699999998853 4433222 399999999999999984 345999998754
No 51
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.35 E-value=1.2e-06 Score=80.26 Aligned_cols=99 Identities=20% Similarity=0.122 Sum_probs=68.0
Q ss_pred CCeEEEEeeCCCCCCCCCCCCC--CCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccc----------
Q 018355 118 SGTCGALHVADPADACSPLSNP--VASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS---------- 185 (357)
Q Consensus 118 ~~~~g~l~~~~p~~aC~~~~~~--~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~---------- 185 (357)
..++|.|+++. .|..-+.. .....+..++|||+++|.|.+.+|+++||++||+|||||+|..+..
T Consensus 43 g~v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~y 119 (220)
T cd02121 43 GNVTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTY 119 (220)
T ss_pred CCceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccC
Confidence 45788988765 33332211 0112346799999999999999999999999999999999743210
Q ss_pred --------------ccc----cccCC--------------------CcceeeEEEeehhhhhhhhhhcccCC
Q 018355 186 --------------LVS----MTASH--------------------EGVKVHAIFVSLETGVYLKEHARGET 219 (357)
Q Consensus 186 --------------~~~----m~~~~--------------------~~i~Ip~v~is~~~G~~L~~~l~~~~ 219 (357)
.+. ..+|. .-..||+.=|+..+++.|++.+.+..
T Consensus 120 P~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~ 191 (220)
T cd02121 120 PDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG 191 (220)
T ss_pred CCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC
Confidence 011 01110 01369999999999999999887643
No 52
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.29 E-value=1.6e-07 Score=98.59 Aligned_cols=54 Identities=30% Similarity=0.815 Sum_probs=42.5
Q ss_pred CCCCCCCcccccccccccCCCceEEeC------CCCccchhHHHHHHhcC-CCCCCcccccCc
Q 018355 292 SSQCHGGETCAICLEDYQDGEKLKVLS------CKHEFHASCVDSWLTKW-GTFCPVCKHDMR 347 (357)
Q Consensus 292 ~~~~~~~~~CaICLe~f~~~~~vr~Lp------C~H~FH~~CI~~Wl~~~-~~~CPlCR~~i~ 347 (357)
++..++.++|+||..-...-| |.|| |.|.||..|+.+|+.+. +.+||+||.+++
T Consensus 1463 ~~~fsG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhcCCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 344677899999998766322 4444 89999999999999995 346999998875
No 53
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.24 E-value=1e-05 Score=70.08 Aligned_cols=93 Identities=17% Similarity=0.038 Sum_probs=61.7
Q ss_pred CCeEEEEeeCC---CCCCCCCCCCCCCCCCCCcceEEEEEcCC------------------CChHHHHHHHHHcCCcEEE
Q 018355 118 SGTCGALHVAD---PADACSPLSNPVASNDADHINFVLIVRGQ------------------CIFEDKIRNAQAAGYRAAI 176 (357)
Q Consensus 118 ~~~~g~l~~~~---p~~aC~~~~~~~~~~~~~~~~I~LV~RG~------------------CsF~~K~~~Aq~aGA~avI 176 (357)
..++|.|+... ..++|...++. ..+..++||||.||. |+|..|+++|+++||+|||
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~---giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI 94 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYA---GLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVI 94 (151)
T ss_pred CCceEeEEEecCCcCccccchhhcc---CCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEE
Confidence 55788887653 34677654432 234689999999884 9999999999999999999
Q ss_pred EecccCcccccccccCCCcceeeEEEeehhhhhhhhhh
Q 018355 177 VYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEH 214 (357)
Q Consensus 177 v~~~~~~~~~~~m~~~~~~i~Ip~v~is~~~G~~L~~~ 214 (357)
||++.+......-...... .-.++.++....+.+...
T Consensus 95 v~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 95 VVNGPNSHSGDADRLPRFG-GTAPQRVDIAAADPWFTA 131 (151)
T ss_pred EEeCCcccCcccccccccC-ccceEEechHHHHHHhhh
Confidence 9998653211000000001 112677787777777764
No 54
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.2e-07 Score=81.94 Aligned_cols=52 Identities=29% Similarity=0.649 Sum_probs=42.1
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHH-HHhcCCCCCCcccccCcCCC
Q 018355 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDS-WLTKWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~-Wl~~~~~~CPlCR~~i~~~~ 350 (357)
..+..|+||++..+.. ..+||||+|+..||-. |-.++--.||+||+.+.++.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 3467999999986553 5789999999999999 87775445999999887653
No 55
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.12 E-value=8.9e-07 Score=86.89 Aligned_cols=50 Identities=32% Similarity=0.773 Sum_probs=41.2
Q ss_pred CCCCcccccccccccCC-CceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018355 295 CHGGETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
.-+-.+|+||||.+.+. .-++...|.|.||..|+..|-.. +||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 34567999999998876 35677789999999999999655 6999998665
No 56
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.11 E-value=1.2e-05 Score=68.78 Aligned_cols=71 Identities=11% Similarity=-0.006 Sum_probs=50.7
Q ss_pred cccccccccCCCCeEEEEeeCC---CCCCCCCCCCCCCCCCCCcceEEEEEcCCC------------------ChHHHHH
Q 018355 107 LPAKFAVDVNSSGTCGALHVAD---PADACSPLSNPVASNDADHINFVLIVRGQC------------------IFEDKIR 165 (357)
Q Consensus 107 ~~a~Fg~~~~~~~~~g~l~~~~---p~~aC~~~~~~~~~~~~~~~~I~LV~RG~C------------------sF~~K~~ 165 (357)
.+.+|+.. ..+.++|+..- ...+|.-.+.. ..+.++|||||.||.| +|..|++
T Consensus 10 ~~~~~~~~---~~~~aelVfvGyGi~a~~~~~dDYa---g~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~ 83 (142)
T cd04814 10 AMLNVDAV---AIKDAPLVFVGYGIKAPELSWDDYA---GLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYE 83 (142)
T ss_pred cccCCCCc---cccceeeEEecCCcCCCCCChhhcC---CCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHH
Confidence 34455533 34556776432 33467654432 2346899999999999 6999999
Q ss_pred HHHHcCCcEEEEecccCc
Q 018355 166 NAQAAGYRAAIVYNDREK 183 (357)
Q Consensus 166 ~Aq~aGA~avIv~~~~~~ 183 (357)
+|+++||+|||++++.+.
T Consensus 84 ~A~~~GA~gvIii~~~~~ 101 (142)
T cd04814 84 EAARHGAAGVLIVHELAP 101 (142)
T ss_pred HHHHCCCcEEEEEeCCCc
Confidence 999999999999998653
No 57
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.09 E-value=6.9e-07 Score=67.36 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=25.3
Q ss_pred CcccccccccccCCCce--EEe---CCCCccchhHHHHHHhcC---C-------CCCCcccccCcCC
Q 018355 298 GETCAICLEDYQDGEKL--KVL---SCKHEFHASCVDSWLTKW---G-------TFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~v--r~L---pC~H~FH~~CI~~Wl~~~---~-------~~CPlCR~~i~~~ 349 (357)
+.+|.||.+.+.+++.+ .+- .|++.||..||.+||... + ..||.|+.+|.-+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 46899999987633322 222 389999999999999862 1 1499999988643
No 58
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=3.2e-06 Score=80.59 Aligned_cols=53 Identities=32% Similarity=0.686 Sum_probs=40.3
Q ss_pred Cccccccccc-ccCCC-ceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCC
Q 018355 298 GETCAICLED-YQDGE-KLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 298 ~~~CaICLe~-f~~~~-~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (357)
+..|+||+.+ |...+ ++.+-+|||.||..||+..+......||.|+..+..+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4689999997 33332 33444899999999999977765556999998886654
No 59
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.08 E-value=1.6e-05 Score=67.77 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=49.4
Q ss_pred CCCCeEEEEeeCC---CCCCCCCCCCCCCCCCCCcceEEEEEcCCCC------------hHHHHHHHHHcCCcEEEEecc
Q 018355 116 NSSGTCGALHVAD---PADACSPLSNPVASNDADHINFVLIVRGQCI------------FEDKIRNAQAAGYRAAIVYND 180 (357)
Q Consensus 116 ~~~~~~g~l~~~~---p~~aC~~~~~~~~~~~~~~~~I~LV~RG~Cs------------F~~K~~~Aq~aGA~avIv~~~ 180 (357)
+...+.|.|+... ..++|...+.. ..+..+|||||++|.|+ +..|+++|+++||+|||||++
T Consensus 18 ~~g~v~gelVfvGyG~~~~~~~~~Dy~---~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 18 PAASVEAPLVFVGYGLVAPELGHDDYA---GLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred CCCCceEeEEEecCCcCccCcCHhhcc---CCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 3456788887653 34567654432 23468999999999995 889999999999999999998
Q ss_pred cCc
Q 018355 181 REK 183 (357)
Q Consensus 181 ~~~ 183 (357)
...
T Consensus 95 ~~~ 97 (137)
T cd04820 95 PRS 97 (137)
T ss_pred Ccc
Confidence 653
No 60
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.06 E-value=7.2e-06 Score=70.44 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=62.6
Q ss_pred CCCeEEEEeeCCC---CCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccc------
Q 018355 117 SSGTCGALHVADP---ADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLV------ 187 (357)
Q Consensus 117 ~~~~~g~l~~~~p---~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~------ 187 (357)
...++|++++++- .|- +.+.+ . -+.+++|+|++.|.-.+..|+++||++||.+||||.|..+....
T Consensus 12 sG~Vtg~~VYvNyG~~eDf-~~L~~-~---V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~~ 86 (153)
T cd02131 12 KGTLQAEVVDVQYGSVEDL-RRIRD-N---MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWHQ 86 (153)
T ss_pred CCceEEEEEEecCCCHHHH-HHHHh-C---CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCccc
Confidence 4567888887652 110 01111 1 23578999999999999999999999999999999985332100
Q ss_pred ----cc--ccCC-----------------CcceeeEEEeehhhhhhhhhhc
Q 018355 188 ----SM--TASH-----------------EGVKVHAIFVSLETGVYLKEHA 215 (357)
Q Consensus 188 ----~m--~~~~-----------------~~i~Ip~v~is~~~G~~L~~~l 215 (357)
.. .+|. .--+||+.=|+..++..|++.-
T Consensus 87 v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~ 137 (153)
T cd02131 87 AFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAP 137 (153)
T ss_pred eEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCC
Confidence 00 1221 0146888888888888877754
No 61
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.05 E-value=2.3e-06 Score=65.00 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=37.9
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+||.+-+.+. .++||||.|-+.||+.|+.++...||+|+..+...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 46899999998885 57899999999999999999555799999988653
No 62
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.1e-06 Score=84.60 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=38.0
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcC----CCCCCcccccCcC
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW----GTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~----~~~CPlCR~~i~~ 348 (357)
...|+|||++.... + .+.|||+||..||-+.+... -..||+||..|..
T Consensus 186 ~~~CPICL~~~~~p--~-~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP--V-RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc--c-ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67999999996654 2 33499999999999887774 1259999988865
No 63
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.9e-06 Score=80.02 Aligned_cols=49 Identities=31% Similarity=0.794 Sum_probs=39.3
Q ss_pred CCCcccccccccccCCCceEEeCCCCc-cchhHHHHHHhcCCCCCCcccccCcC
Q 018355 296 HGGETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
+...+|.|||.+-++ ..+|||.|. .|..|-+..--+++ .||+||++|.+
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n-~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTN-NCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhc-CCCccccchHh
Confidence 557899999998555 579999997 88889887654545 49999999865
No 64
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.5e-06 Score=78.18 Aligned_cols=46 Identities=33% Similarity=0.728 Sum_probs=40.1
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH 344 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~ 344 (357)
..+...|+||++.|.+. ++|||+|.|+..||..+.. ....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 34567999999999997 8999999999999999988 4557999994
No 65
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6.3e-06 Score=79.62 Aligned_cols=48 Identities=29% Similarity=0.771 Sum_probs=35.8
Q ss_pred CcccccccccccCC-CceEEeC-CCCccchhHHHHHHhcC--CCCCCcccccC
Q 018355 298 GETCAICLEDYQDG-EKLKVLS-CKHEFHASCVDSWLTKW--GTFCPVCKHDM 346 (357)
Q Consensus 298 ~~~CaICLe~f~~~-~~vr~Lp-C~H~FH~~CI~~Wl~~~--~~~CPlCR~~i 346 (357)
.-.|.|| +++.+. +.+.-+- |||+||..|+.+|+..- +..||+||-.+
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred cceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 3589999 665554 4555554 99999999999999983 22599999433
No 66
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=8.9e-06 Score=64.57 Aligned_cols=49 Identities=31% Similarity=0.754 Sum_probs=35.7
Q ss_pred CCcccccccccc------------cCCCceEEe--CCCCccchhHHHHHHhcCCCCCCcccccC
Q 018355 297 GGETCAICLEDY------------QDGEKLKVL--SCKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (357)
Q Consensus 297 ~~~~CaICLe~f------------~~~~~vr~L--pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (357)
.-+.|+||...+ ...+++.+. -|+|.||..||..||++++. ||+|.++-
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~v-CPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNV-CPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCc-CCCcCcce
Confidence 356788886643 122334333 49999999999999999884 99997753
No 67
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.69 E-value=1.6e-05 Score=74.28 Aligned_cols=52 Identities=27% Similarity=0.515 Sum_probs=42.8
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (357)
.+....|-||-+-|... ..++|||.||.-||..-|..+- .||+||.+..+..
T Consensus 22 LDs~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp-~CP~Cr~~~~esr 73 (391)
T COG5432 22 LDSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQP-FCPVCREDPCESR 73 (391)
T ss_pred chhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCC-CCccccccHHhhh
Confidence 33457999999888775 5778999999999999999976 5999998876543
No 68
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.69 E-value=1.6e-05 Score=74.58 Aligned_cols=58 Identities=29% Similarity=0.735 Sum_probs=47.6
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc----------------------CCCCCCcccccCcCCCCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK----------------------WGTFCPVCKHDMRNNSES 352 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~----------------------~~~~CPlCR~~i~~~~~~ 352 (357)
....-.|+|||--|..++...+++|-|.||..|+...|+. -+..||+||..|..+.+.
T Consensus 112 n~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s 191 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS 191 (368)
T ss_pred CCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence 5567799999999999999999999999999998765543 134699999998766543
No 69
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.68 E-value=1.6e-05 Score=75.66 Aligned_cols=49 Identities=24% Similarity=0.607 Sum_probs=42.0
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.--.|-||.|-|... .++||+|.||.-||+..|..+- .||.|+..+.+.
T Consensus 22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p-~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKP-QCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCC-CCCceecccchh
Confidence 346899999999886 6889999999999999998865 599999877654
No 70
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=3.5e-05 Score=72.50 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=41.4
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCC
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (357)
..+|+||+.+-... ..|+|+|.|+..||.-=.......||+||++|.+.-.
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 57999999986554 6789999999999997666655569999999987543
No 71
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.52 E-value=1.9e-05 Score=82.12 Aligned_cols=52 Identities=29% Similarity=0.525 Sum_probs=44.7
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
.....|++||..+.++......+|+|.||..||+.|-..-++ ||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqT-CPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQT-CPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhccc-Cchhhhhhhe
Confidence 345689999999988877777789999999999999999885 9999987654
No 72
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=1.8e-05 Score=75.83 Aligned_cols=54 Identities=22% Similarity=0.475 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCCCceEEeC-CCCccchhHHHHHHhcCCCCCCcccccCcCCCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (357)
...+..|+|||+-++.. +.++ |.|.||.+||..=+...+..||.||+.+..+.+
T Consensus 40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 44567999999988774 3333 999999999999999977789999998866543
No 73
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.41 E-value=5.7e-05 Score=73.18 Aligned_cols=50 Identities=32% Similarity=0.664 Sum_probs=41.0
Q ss_pred CcccccccccccCC-CceEEeCCCCccchhHHHHHHhcCC-CCCCcccccCc
Q 018355 298 GETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTKWG-TFCPVCKHDMR 347 (357)
Q Consensus 298 ~~~CaICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~~~-~~CPlCR~~i~ 347 (357)
+-.|-.|=|.+-.. +.+.-|||.|+||..|+.+.|.++. .+||.||+-..
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 45899999988554 6788999999999999999998864 35999994443
No 74
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00011 Score=71.68 Aligned_cols=49 Identities=37% Similarity=0.950 Sum_probs=38.1
Q ss_pred CCcccccccccccCC-C-ceEEeCCCCccchhHHHHHHhcC-CCCCCccccc
Q 018355 297 GGETCAICLEDYQDG-E-KLKVLSCKHEFHASCVDSWLTKW-GTFCPVCKHD 345 (357)
Q Consensus 297 ~~~~CaICLe~f~~~-~-~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPlCR~~ 345 (357)
...+|+|||++|+.. | .+..|.|+|.|-.+||+.||-+. ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 457999999999754 3 34455699999999999999642 2459999754
No 75
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=5.1e-05 Score=79.39 Aligned_cols=48 Identities=25% Similarity=0.647 Sum_probs=39.9
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
-.|+.|-...++ +.++.|+|+||.+||..=+..++..||.|...+..+
T Consensus 644 LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 499999977666 245569999999999999999877899999877654
No 76
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00011 Score=71.68 Aligned_cols=53 Identities=25% Similarity=0.728 Sum_probs=39.6
Q ss_pred CCCcccccccccccCCC----ceEEeC-CCCccchhHHHHHHhcCC------CCCCcccccCcC
Q 018355 296 HGGETCAICLEDYQDGE----KLKVLS-CKHEFHASCVDSWLTKWG------TFCPVCKHDMRN 348 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~----~vr~Lp-C~H~FH~~CI~~Wl~~~~------~~CPlCR~~i~~ 348 (357)
..+.+|.||+|...+.- ...+|| |.|.|+..||+.|-..++ ..||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45789999999865432 134556 999999999999985433 469999976543
No 77
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00019 Score=64.84 Aligned_cols=70 Identities=20% Similarity=0.459 Sum_probs=52.4
Q ss_pred cccccchhHHhhccccccccCCCCCCCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc-------CCCCCCcc
Q 018355 270 LSRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK-------WGTFCPVC 342 (357)
Q Consensus 270 ~~~~l~~~~i~~lp~~~~~~~~~~~~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~-------~~~~CPlC 342 (357)
+.+-+-+..++.|.. .+....|..|-..+..||.+| |-|-|+||.+|+++|-.. ....||-|
T Consensus 32 HpkCiVQSYLqWL~D----------sDY~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~C 100 (299)
T KOG3970|consen 32 HPKCIVQSYLQWLQD----------SDYNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCC 100 (299)
T ss_pred CchhhHHHHHHHHhh----------cCCCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCC
Confidence 344445555555433 233568999999999998775 789999999999999776 23469999
Q ss_pred cccCcCCC
Q 018355 343 KHDMRNNS 350 (357)
Q Consensus 343 R~~i~~~~ 350 (357)
..+|.++.
T Consensus 101 s~eiFPp~ 108 (299)
T KOG3970|consen 101 SQEIFPPI 108 (299)
T ss_pred CCccCCCc
Confidence 99998764
No 78
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=8.7e-05 Score=52.22 Aligned_cols=47 Identities=30% Similarity=0.736 Sum_probs=32.6
Q ss_pred CCCcccccccccccCCCceEEe-CCCCc-cchhH-HHHHHhcCCCCCCcccccCc
Q 018355 296 HGGETCAICLEDYQDGEKLKVL-SCKHE-FHASC-VDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~L-pC~H~-FH~~C-I~~Wl~~~~~~CPlCR~~i~ 347 (357)
+-+++|.||+|.-.+. +| .|||. .+.+| ++.|-..+. .||+||++|.
T Consensus 5 ~~~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g-~CPiCRapi~ 54 (62)
T KOG4172|consen 5 QWSDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHG-CCPICRAPIK 54 (62)
T ss_pred ccccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCC-cCcchhhHHH
Confidence 3458999999984442 44 59997 56667 445544555 5999999874
No 79
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.17 E-value=0.00029 Score=77.41 Aligned_cols=72 Identities=24% Similarity=0.586 Sum_probs=53.0
Q ss_pred hhHHhhccccccccCCCCCCCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC---------CCCCCcccccC
Q 018355 276 SKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---------GTFCPVCKHDM 346 (357)
Q Consensus 276 ~~~i~~lp~~~~~~~~~~~~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---------~~~CPlCR~~i 346 (357)
+.+.+-||....++... ..+.++.|.||+.+--......+|.|+|+||-+|.+.-|+++ =..||+|+.+|
T Consensus 3465 kNEE~CLPCl~Cdks~t-kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3465 KNEEHCLPCLHCDKSAT-KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred cchhhcccccccChhhh-hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 34445566666444332 366788999999987666778899999999999998777663 12699999887
Q ss_pred cC
Q 018355 347 RN 348 (357)
Q Consensus 347 ~~ 348 (357)
..
T Consensus 3544 nH 3545 (3738)
T KOG1428|consen 3544 NH 3545 (3738)
T ss_pred hh
Confidence 53
No 80
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00012 Score=62.85 Aligned_cols=32 Identities=31% Similarity=0.698 Sum_probs=28.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchh
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHAS 326 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~ 326 (357)
.++..+|.|||||++.||.+..|||-.+||+.
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK~ 205 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHKQ 205 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeecC
Confidence 34567999999999999999999999999974
No 81
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.97 E-value=0.00023 Score=52.12 Aligned_cols=46 Identities=26% Similarity=0.662 Sum_probs=23.2
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
-.|++|.+-+++. |....|.|+|+..||..=+.. .||+|+.+.-.+
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~q 53 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQ 53 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTTT---B-SSS--B-S-S
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcCC---CCCCcCChHHHH
Confidence 4799999987763 555679999999999884443 499999877544
No 82
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.92 E-value=0.00029 Score=68.56 Aligned_cols=50 Identities=30% Similarity=0.771 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC-CCCCCcccccCc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-GTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPlCR~~i~ 347 (357)
....+.|-||-|. +..|++=||||..|..|+..|-... ...||.||.+|-
T Consensus 366 gsTFeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 366 GSTFELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred cchHHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 4567799999886 3348889999999999999998664 335999998874
No 83
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.89 E-value=0.00052 Score=49.55 Aligned_cols=43 Identities=26% Similarity=0.586 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC-CCCCCc
Q 018355 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-GTFCPV 341 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPl 341 (357)
....|+|.+..|++ .|+...|+|+|-++.|.++++.+ ...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45799999999876 68888999999999999999443 346998
No 84
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00055 Score=67.05 Aligned_cols=48 Identities=31% Similarity=0.582 Sum_probs=39.4
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC-------CCCCCccc
Q 018355 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-------GTFCPVCK 343 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-------~~~CPlCR 343 (357)
.....|.||+++..-.+....|||+|+|++.|+...+..+ ...||-|+
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 3457999999997666888999999999999999998873 34587664
No 85
>PHA02862 5L protein; Provisional
Probab=96.77 E-value=0.00089 Score=56.69 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=36.7
Q ss_pred CcccccccccccCCCceEEeCCC-----CccchhHHHHHHhcCC-CCCCcccccCcCC
Q 018355 298 GETCAICLEDYQDGEKLKVLSCK-----HEFHASCVDSWLTKWG-TFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~-----H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~ 349 (357)
++.|-||+++-++. .-||+ ...|.+|+.+|++..+ ..||+|+.+..-+
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 47899999985432 36863 5689999999998854 4699999876543
No 86
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.76 E-value=0.0011 Score=45.92 Aligned_cols=41 Identities=32% Similarity=0.888 Sum_probs=28.5
Q ss_pred cccccccccCCCceEEeCCC-----CccchhHHHHHHhcC-CCCCCcc
Q 018355 301 CAICLEDYQDGEKLKVLSCK-----HEFHASCVDSWLTKW-GTFCPVC 342 (357)
Q Consensus 301 CaICLe~f~~~~~vr~LpC~-----H~FH~~CI~~Wl~~~-~~~CPlC 342 (357)
|-||+++-.+.+ --+.||+ -..|.+|++.|+..+ +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999977766 3467863 378999999999974 3459988
No 87
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.70 E-value=0.00065 Score=57.12 Aligned_cols=35 Identities=20% Similarity=0.559 Sum_probs=31.0
Q ss_pred CcccccccccccCCCceEEeCCC------CccchhHHHHHH
Q 018355 298 GETCAICLEDYQDGEKLKVLSCK------HEFHASCVDSWL 332 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~------H~FH~~CI~~Wl 332 (357)
..+|.||++....++-|..++|+ |.||.+|+..|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 67999999999986678888885 899999999994
No 88
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0011 Score=65.94 Aligned_cols=51 Identities=25% Similarity=0.605 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...+.+|.||+..+.+. ..+||||.|+..||+.-+.+ .+.||+||..+.+-
T Consensus 81 ~~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVEL 131 (398)
T ss_pred ccchhhhhhhHhhcCCC---ccccccccccHHHHHHHhcc-CCCCcccccccccc
Confidence 45678999999887775 56799999999999996664 55699999998763
No 89
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0002 Score=69.48 Aligned_cols=54 Identities=22% Similarity=0.546 Sum_probs=47.7
Q ss_pred CCcccccccccccCC-CceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCC
Q 018355 297 GGETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (357)
Q Consensus 297 ~~~~CaICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (357)
....|+||.++|++. +++..+-|||.+|.+||.+||.+.+ .||.|++.+.....
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~-kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKR-KLPSCRRELPKNGF 249 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH-HhHHHHhhhhhhhH
Confidence 356899999999998 8999999999999999999999966 49999999876543
No 90
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.37 E-value=0.0036 Score=54.07 Aligned_cols=51 Identities=22% Similarity=0.585 Sum_probs=37.6
Q ss_pred CCCCcccccccccccCCCceEEeCC--CC---ccchhHHHHHHhcCC-CCCCcccccCcCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSC--KH---EFHASCVDSWLTKWG-TFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC--~H---~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~ 349 (357)
...+..|-||.++... . .-|| .. ..|.+|++.|+...+ ..||+|+.+..-.
T Consensus 5 s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 3457899999988432 2 3575 44 579999999999864 5699999876543
No 91
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0024 Score=61.81 Aligned_cols=46 Identities=24% Similarity=0.593 Sum_probs=35.2
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
....+.|.||+++.++ ...+||||+-+ |...-. +...||+||+.|.
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccc---eeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 5567899999999766 57899999955 766643 3345999999874
No 92
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.18 E-value=0.0029 Score=43.86 Aligned_cols=45 Identities=22% Similarity=0.612 Sum_probs=22.0
Q ss_pred cccccccccCCCceEEeC--CCCccchhHHHHHHhcCCCCCCcccccC
Q 018355 301 CAICLEDYQDGEKLKVLS--CKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (357)
Q Consensus 301 CaICLe~f~~~~~vr~Lp--C~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (357)
|++|.+++...+ ...+| |++..+..|...-++..+..||-||++.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999995543 34556 7899999998887764344699999864
No 93
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.06 E-value=0.0034 Score=62.70 Aligned_cols=54 Identities=28% Similarity=0.679 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (357)
.+.+..|+||...+.+. +..+.|||.|+..|+..|+..+. .||.|++.+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~-~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQ-KCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCC--CCCCCCCCcccccccchhhccCc-CCcccccccchhhc
Confidence 34567999999997775 33368999999999999999966 59999988766543
No 94
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.89 E-value=0.004 Score=50.10 Aligned_cols=34 Identities=24% Similarity=0.618 Sum_probs=28.7
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHH
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVD 329 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~ 329 (357)
..+...|++|-..+.. ....+.||||+||..|++
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 4557789999999877 567788999999999975
No 95
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.012 Score=54.99 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=39.6
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC-CCCCCcccccCcC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-GTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPlCR~~i~~ 348 (357)
.....+|++|-+.=. ......+|+|+||.-||..=+... ..+||.|-.++.+
T Consensus 236 ~t~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccCCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 566789999988733 345677899999999998755542 2469999888763
No 96
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.28 E-value=0.019 Score=55.30 Aligned_cols=62 Identities=23% Similarity=0.431 Sum_probs=41.5
Q ss_pred HHhhccccccccCCCCCCCCCcccccccccccCCCceEEeCCCCccchhHHHH---HHhcCCCCCCccccc
Q 018355 278 VVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDS---WLTKWGTFCPVCKHD 345 (357)
Q Consensus 278 ~i~~lp~~~~~~~~~~~~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~---Wl~~~~~~CPlCR~~ 345 (357)
.+...|...-.+.++ ..++...|.||-+...- +.++||+|..+..|--. ... +..||+||..
T Consensus 42 nlsaEPnlttsSadd-tDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~--~K~C~~CrTE 106 (493)
T COG5236 42 NLSAEPNLTTSSADD-TDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYM--QKGCPLCRTE 106 (493)
T ss_pred ccccCCccccccccc-cccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHh--ccCCCccccc
Confidence 334445544333333 36778899999887554 57899999999999433 233 3359999975
No 97
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.0041 Score=59.43 Aligned_cols=47 Identities=30% Similarity=0.610 Sum_probs=35.7
Q ss_pred CCCCcccccccccccCCCceEEeC-CCCccchhHHHHHHhcCCCCCCccccc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHD 345 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (357)
..+...|++|+..-... .+|. -|-+||..||-..+.+++. ||+=..+
T Consensus 297 ~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~-CPVT~~p 344 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGH-CPVTGYP 344 (357)
T ss_pred CCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCC-CCccCCc
Confidence 45567999999985553 2232 4999999999999999885 9985443
No 98
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.013 Score=56.15 Aligned_cols=49 Identities=31% Similarity=0.720 Sum_probs=42.1
Q ss_pred CcccccccccccCCCc---eEEeCCCCccchhHHHHHHhcCCCCCCcccccC
Q 018355 298 GETCAICLEDYQDGEK---LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~---vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (357)
...|-||-++|..++. -|+|.|||.|+..|+.+-+......||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 4689999999988743 467789999999999999888777799999874
No 99
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.16 E-value=0.0093 Score=60.27 Aligned_cols=52 Identities=25% Similarity=0.654 Sum_probs=40.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc----CCCCCCcccccCcCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK----WGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~----~~~~CPlCR~~i~~~ 349 (357)
..+..+|-+|-+.-++ ..+..|+|.||+-||.+++.. .+.+||.|...+.-+
T Consensus 533 nk~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 5567799999887443 356789999999999888766 456799998877554
No 100
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.019 Score=52.88 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=44.7
Q ss_pred CCcccccccccccCCCceEEe-CCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 297 GGETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
....|+||.+.+.+.-.+.+| ||||+|..+|++..+.... .||+|-.++.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCccc
Confidence 456999999999998888888 6999999999999877755 699998877654
No 101
>PHA03096 p28-like protein; Provisional
Probab=94.97 E-value=0.012 Score=56.07 Aligned_cols=46 Identities=33% Similarity=0.646 Sum_probs=33.7
Q ss_pred cccccccccccCC----CceEEeC-CCCccchhHHHHHHhcCC--CCCCcccc
Q 018355 299 ETCAICLEDYQDG----EKLKVLS-CKHEFHASCVDSWLTKWG--TFCPVCKH 344 (357)
Q Consensus 299 ~~CaICLe~f~~~----~~vr~Lp-C~H~FH~~CI~~Wl~~~~--~~CPlCR~ 344 (357)
..|.||+|..... ..--.|+ |.|.|+..||..|-.... ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 7899999986543 2344676 999999999999987742 23555543
No 102
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.89 E-value=0.015 Score=54.97 Aligned_cols=47 Identities=26% Similarity=0.602 Sum_probs=35.8
Q ss_pred cccccccccccCCCceEEeC-CCCccchhHHHHHHhcCCCCCCcc-cccCcC
Q 018355 299 ETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVC-KHDMRN 348 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlC-R~~i~~ 348 (357)
-.|+.|-.-.... ++. | |+|.|+++||..-|......||.| |++|.-
T Consensus 275 LkCplc~~Llrnp--~kT-~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll 323 (427)
T COG5222 275 LKCPLCHCLLRNP--MKT-PCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL 323 (427)
T ss_pred ccCcchhhhhhCc--ccC-ccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence 5899987765443 444 5 899999999998888877789999 555543
No 103
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.77 E-value=0.016 Score=61.55 Aligned_cols=51 Identities=27% Similarity=0.615 Sum_probs=39.6
Q ss_pred CCCCcccccccccccCCCceEEe-CCCCccchhHHHHHHhcCC------CCCCccccc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWG------TFCPVCKHD 345 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~------~~CPlCR~~ 345 (357)
.....+|.||.+.++..+.+--- .|-|+||-.||..|-.+.. =.||.|+..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 34567999999999887765433 3999999999999988732 159999843
No 104
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.66 E-value=0.0093 Score=57.17 Aligned_cols=52 Identities=25% Similarity=0.602 Sum_probs=41.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.....+|.+|-.-|-+.. .+..|-|.||+.||-..|...+ .||.|...|...
T Consensus 12 ~n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~-~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESK-YCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhc-cCCccceeccCc
Confidence 445679999988776642 3456999999999999999966 599999877654
No 105
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.60 E-value=0.021 Score=40.60 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=33.9
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCC
Q 018355 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (357)
....|..|...=.. -.++||+|+....|.+-+ +-+ -||+|-+++...+
T Consensus 6 ~~~~~~~~~~~~~~---~~~~pCgH~I~~~~f~~~--rYn-gCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK---GTVLPCGHLICDNCFPGE--RYN-GCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccc---cccccccceeeccccChh--hcc-CCCCCCCcccCCC
Confidence 34567766655333 468999999999998864 223 4999988886543
No 106
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.46 E-value=0.016 Score=54.82 Aligned_cols=45 Identities=31% Similarity=0.676 Sum_probs=38.8
Q ss_pred cccccccccccCC-CceEEeCCCCccchhHHHHHHhcCCCCCCcccc
Q 018355 299 ETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH 344 (357)
Q Consensus 299 ~~CaICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~ 344 (357)
..|+||.+.+-.. +.+..++|+|.-|..|++.-...+ ..||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3499999997766 457789999999999999988887 78999987
No 107
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.31 E-value=0.016 Score=51.73 Aligned_cols=44 Identities=32% Similarity=0.594 Sum_probs=35.6
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCccccc
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHD 345 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (357)
...|-||-++|+.. .++.|||.||..|.-.=.+... .|-+|-..
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~-~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGD-ECGVCGKA 239 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCC-cceecchh
Confidence 45999999999985 4678999999999877666644 59999654
No 108
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.81 E-value=0.03 Score=37.99 Aligned_cols=42 Identities=24% Similarity=0.694 Sum_probs=24.9
Q ss_pred cccccccccCCCceEEeCCCCccchhHHHHHHhcCCC-CCCcc
Q 018355 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGT-FCPVC 342 (357)
Q Consensus 301 CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~-~CPlC 342 (357)
|.+|-+-...|+....-.|+=.+|..|++.+++.++. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6788888777754444458889999999999999663 49988
No 109
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.02 Score=54.06 Aligned_cols=42 Identities=26% Similarity=0.645 Sum_probs=29.5
Q ss_pred CcccccccccccCCCceEEeCCCCc-cchhHHHHHHhcCCCCCCcccccCc
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
...|+||++.-. .+..|+|||. =+.+|-.. -..||+||+.|.
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 568999999733 3678999996 34455322 125999998764
No 110
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.60 E-value=0.14 Score=44.65 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCCcceEEEEEcCCCCh-------------------HHHHHHHHHcCCcEEEEecccC
Q 018355 144 DADHINFVLIVRGQCIF-------------------EDKIRNAQAAGYRAAIVYNDRE 182 (357)
Q Consensus 144 ~~~~~~I~LV~RG~CsF-------------------~~K~~~Aq~aGA~avIv~~~~~ 182 (357)
.+.++|||||.+|+=.| ..|.+.|+++||+|||++++..
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 45678888888775433 3599999999999999998643
No 111
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.55 E-value=0.081 Score=49.96 Aligned_cols=52 Identities=19% Similarity=0.468 Sum_probs=40.2
Q ss_pred CCCCcccccccccccCCCceEEe-CCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
......|+|...+|....+...| ||||+|-..+|++- . ....||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 45567999999999666555555 89999999999996 3 23359999887653
No 112
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=0.026 Score=60.18 Aligned_cols=42 Identities=21% Similarity=0.594 Sum_probs=31.9
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCccccc
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHD 345 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (357)
...|+.|--..+.. ...--|+|.||..|++ .+...||-|+-+
T Consensus 840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLE----DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccc--eeeeecccHHHHHhhc----cCcccCCccchh
Confidence 36999998776653 3445699999999998 334569999873
No 113
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.083 Score=51.13 Aligned_cols=49 Identities=20% Similarity=0.434 Sum_probs=39.8
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
..+++.|+||...- -.-...||+|.=|..||.+=+.+.+. |=.|+..+.
T Consensus 419 ~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~-CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKR-CFFCKTTVI 467 (489)
T ss_pred CcccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCe-eeEecceee
Confidence 45678999998752 22357799999999999999999874 999998776
No 114
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.23 E-value=0.06 Score=51.81 Aligned_cols=54 Identities=17% Similarity=0.484 Sum_probs=38.4
Q ss_pred CCCcccccccccccCCCc-eEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 296 HGGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
++++.|+.|+|++...|+ ..-.|||-..|.-|-..--+.-+..||-||+...++
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 346679999999988775 334468888888886554333234699999977654
No 115
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.00 E-value=0.1 Score=37.00 Aligned_cols=34 Identities=26% Similarity=0.813 Sum_probs=29.5
Q ss_pred CCcccccccccccCCCceEEeC-CCCccchhHHHH
Q 018355 297 GGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDS 330 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~Lp-C~H~FH~~CI~~ 330 (357)
....|.+|-+.|+++|.+.+-| |+-.||++|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4578999999999888888887 999999999654
No 116
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.071 Score=46.88 Aligned_cols=55 Identities=25% Similarity=0.622 Sum_probs=38.1
Q ss_pred CcccccccccccCC----CceEEeCCCCccchhHHHHHHhc----CC------CCCCcccccCcCCCCC
Q 018355 298 GETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTK----WG------TFCPVCKHDMRNNSES 352 (357)
Q Consensus 298 ~~~CaICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~----~~------~~CPlCR~~i~~~~~~ 352 (357)
--.|-||..---.| +.+--..||.-||.-|+..||+. ++ ..||.|-.+|.-+.++
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmSg 233 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMSG 233 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeeccC
Confidence 45788887533233 22334459999999999999976 21 1599999988776544
No 117
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.60 E-value=0.048 Score=58.10 Aligned_cols=47 Identities=21% Similarity=0.682 Sum_probs=38.2
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCC-CCCcccccCcCC
Q 018355 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGT-FCPVCKHDMRNN 349 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~-~CPlCR~~i~~~ 349 (357)
..|.||++ .+...+.+|+|.|+.+|+.+-++.... .||+||..+.+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 79999999 456778899999999999987777432 499999877543
No 118
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=0.046 Score=51.74 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=38.7
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
-...|-||-+.|... .++.|+|.|+..|--.=++... .|++|-+.+..
T Consensus 240 ~Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~g 287 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTHG 287 (313)
T ss_pred CCccccccccccccc---hhhcCCceeehhhhccccccCC-cceeccccccc
Confidence 356899999999886 5678999999999777666655 49999876643
No 119
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=0.063 Score=49.83 Aligned_cols=52 Identities=25% Similarity=0.583 Sum_probs=38.4
Q ss_pred CCCCcccccccccccCCCce-EEeCC-----CCccchhHHHHHHhcCC-------CCCCcccccC
Q 018355 295 CHGGETCAICLEDYQDGEKL-KVLSC-----KHEFHASCVDSWLTKWG-------TFCPVCKHDM 346 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~v-r~LpC-----~H~FH~~CI~~Wl~~~~-------~~CPlCR~~i 346 (357)
.+.+..|=||++.=+++..- -+-|| .|-.|.+|+..|+..++ ..||-|+.+.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 45677999999984444211 25576 48899999999998842 3699998865
No 120
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=0.066 Score=57.46 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=29.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHH
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSW 331 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~W 331 (357)
...+++|.+|.-.+... .-.+-||||.||++||..=
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHH
Confidence 56689999998887664 5667899999999998753
No 121
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.44 E-value=0.22 Score=49.00 Aligned_cols=30 Identities=20% Similarity=0.726 Sum_probs=23.5
Q ss_pred CCCccchhHHHHHHhcCC------------CCCCcccccCcC
Q 018355 319 CKHEFHASCVDSWLTKWG------------TFCPVCKHDMRN 348 (357)
Q Consensus 319 C~H~FH~~CI~~Wl~~~~------------~~CPlCR~~i~~ 348 (357)
|.=.+|.+|+-+||..+| ..||+||+...-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 556789999999998853 269999998653
No 122
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.79 E-value=0.34 Score=41.98 Aligned_cols=36 Identities=25% Similarity=0.622 Sum_probs=21.3
Q ss_pred CcccccccccccCCC---------ceEEeCCCCc-cchhHHHHHHh
Q 018355 298 GETCAICLEDYQDGE---------KLKVLSCKHE-FHASCVDSWLT 333 (357)
Q Consensus 298 ~~~CaICLe~f~~~~---------~vr~LpC~H~-FH~~CI~~Wl~ 333 (357)
+..|+||||-=.+.- -+|---|+-. =|..|+|+.-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 568999999733320 0122225433 47889998744
No 123
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.61 E-value=0.18 Score=48.30 Aligned_cols=51 Identities=31% Similarity=0.760 Sum_probs=38.1
Q ss_pred CcccccccccccCCCc-eEEeCCC-----CccchhHHHHHHhcCC-CCCCcccccCcC
Q 018355 298 GETCAICLEDYQDGEK-LKVLSCK-----HEFHASCVDSWLTKWG-TFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~-vr~LpC~-----H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~ 348 (357)
+..|-||.++..+.+. .-+.||. +..|+.|++.|+..++ ..|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 5789999998765432 4567873 5689999999999653 469999876543
No 124
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.62 E-value=0.32 Score=51.85 Aligned_cols=52 Identities=23% Similarity=0.623 Sum_probs=40.6
Q ss_pred CCCCcccccccccccCCCceEEeCCCC-----ccchhHHHHHHhcCC-CCCCcccccCc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKH-----EFHASCVDSWLTKWG-TFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H-----~FH~~CI~~Wl~~~~-~~CPlCR~~i~ 347 (357)
.++...|-||..+=.+++.+ .-||+. ..|++|+.+|+.... +.|-+|+.++.
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 44568999999997777766 458743 489999999999854 45999988764
No 125
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=87.99 E-value=0.3 Score=47.01 Aligned_cols=45 Identities=20% Similarity=0.524 Sum_probs=34.7
Q ss_pred CCCCcccccccccccCCCceEEeCC--CCccchhHHHHHHhcCCCCCCcccccCc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSC--KHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC--~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
..+-.+|+||.+.+... +..| ||+-+..|-.+ . .+.||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~-~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---V-SNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc----ceecCCCcEehhhhhhh---h-cccCCccccccc
Confidence 34456999999998885 5557 89999999653 2 335999999886
No 126
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=0.23 Score=47.37 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=28.0
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018355 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
-.|--|=-.+. -.=|.+||+|+||.+|-.. .. .+.||.|--.|.
T Consensus 91 HfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~-dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIA--IYGRMIPCKHVFCLECARS--DS-DKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcce--eeecccccchhhhhhhhhc--Cc-cccCcCcccHHH
Confidence 35555533322 2347899999999999653 12 236999965553
No 127
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=0.17 Score=52.51 Aligned_cols=44 Identities=30% Similarity=0.531 Sum_probs=32.6
Q ss_pred CcccccccccccCCCc-eEEeCCCCccchhHHHHHHhcCCCCCCccccc
Q 018355 298 GETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHD 345 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (357)
.-.|.||+..|..... -+.|-|||..+..|+..-.+. +|| |+++
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCcc
Confidence 3489999998876532 245569999999999886544 599 7654
No 128
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.25 E-value=0.24 Score=55.33 Aligned_cols=47 Identities=32% Similarity=0.692 Sum_probs=38.0
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCccccc
Q 018355 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHD 345 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (357)
.....|.||++....- --+..|+|.++..|+..|+..+. .||+|+..
T Consensus 1151 ~~~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s-~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASS-RCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhc-cCcchhhh
Confidence 3445999999998732 14667999999999999999977 59999853
No 129
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=86.16 E-value=0.25 Score=51.45 Aligned_cols=44 Identities=23% Similarity=0.692 Sum_probs=30.3
Q ss_pred CCCccccccccc-----ccCCCceEEeCCCCccchhHHHHHHhcCCCCCCccc
Q 018355 296 HGGETCAICLED-----YQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 343 (357)
Q Consensus 296 ~~~~~CaICLe~-----f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR 343 (357)
.....|.||-.+ |+.....|...|+|+||+.|+.. .+..||.|-
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC~ 557 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRCE 557 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCchH
Confidence 345688888332 44444456677999999999654 444599993
No 130
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.54 E-value=0.45 Score=49.69 Aligned_cols=52 Identities=27% Similarity=0.743 Sum_probs=43.0
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCCCCC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNE 354 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~~ 354 (357)
.+..+.|.||+++. ..|+.+|. |..|+..|+..+. .||+|+..+..+.+.+.
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~-~~pl~~~~~~~~~~~~~ 527 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQE-VCPLCHTYMKEDDFLSK 527 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhcc-ccCCCchhhhcccccCc
Confidence 45578999999998 45788899 9999999999966 59999988877666554
No 131
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=0.44 Score=47.63 Aligned_cols=40 Identities=28% Similarity=0.607 Sum_probs=30.7
Q ss_pred CCCcccccccccc-cCCCceEEeCCCCccchhHHHHHHhcC
Q 018355 296 HGGETCAICLEDY-QDGEKLKVLSCKHEFHASCVDSWLTKW 335 (357)
Q Consensus 296 ~~~~~CaICLe~f-~~~~~vr~LpC~H~FH~~CI~~Wl~~~ 335 (357)
....+|.||..++ ...+...++-|+|.|+.+|+.+-+..+
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 3467999999544 443555567799999999999888854
No 132
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.79 E-value=0.43 Score=43.59 Aligned_cols=40 Identities=28% Similarity=0.714 Sum_probs=27.9
Q ss_pred cccccccccCCCceEEeCCCC-ccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 301 CAICLEDYQDGEKLKVLSCKH-EFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 301 CaICLe~f~~~~~vr~LpC~H-~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
|-.|-+. +-.|..|||.| .++..|=+. -..||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 7777665 44588999977 577778554 1249999976544
No 133
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.36 E-value=1.1 Score=44.26 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=42.0
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCC--CCCCcccc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG--TFCPVCKH 344 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~--~~CPlCR~ 344 (357)
..+...|+|=.+.=.+.+.-..|.|||+..++=|+.--+... ..||.|=.
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 455679999988888888888999999999999999777765 56999943
No 134
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.35 E-value=1 Score=48.11 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCC-CceEEeC---CCCccchhHHHHHHhc-----CCCCCCcccccCc
Q 018355 295 CHGGETCAICLEDYQDG-EKLKVLS---CKHEFHASCVDSWLTK-----WGTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~-~~vr~Lp---C~H~FH~~CI~~Wl~~-----~~~~CPlCR~~i~ 347 (357)
..+.+.|.||.-++... |..-.+| |.|.|+..||..|... ....|++|...|.
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 44567888888888773 3455666 9999999999999887 2345899987653
No 135
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.08 E-value=1 Score=47.94 Aligned_cols=26 Identities=31% Similarity=0.674 Sum_probs=21.9
Q ss_pred EEeCCCCccchhHHHHHHhcCCCCCCc
Q 018355 315 KVLSCKHEFHASCVDSWLTKWGTFCPV 341 (357)
Q Consensus 315 r~LpC~H~FH~~CI~~Wl~~~~~~CPl 341 (357)
....|+|+-|.+|..+|+.... .||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCC-cCCC
Confidence 3445999999999999999977 5984
No 137
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=78.20 E-value=1.4 Score=40.08 Aligned_cols=42 Identities=36% Similarity=0.796 Sum_probs=30.1
Q ss_pred CCccccccccc-----ccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccc
Q 018355 297 GGETCAICLED-----YQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH 344 (357)
Q Consensus 297 ~~~~CaICLe~-----f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~ 344 (357)
.+..|-||-++ |+....++--.|+-+||++|... + .||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~-~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----K-SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----C-CCCCcHh
Confidence 35789999764 55544445555999999999773 3 4999954
No 138
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.05 E-value=0.59 Score=49.42 Aligned_cols=53 Identities=28% Similarity=0.625 Sum_probs=40.7
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCC--CCCCcccccCcCCCCCC
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG--TFCPVCKHDMRNNSESN 353 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~--~~CPlCR~~i~~~~~~~ 353 (357)
..+|.||++.+.+. ..+.|.|.|...|+..-|...+ ..||+|+..+......+
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E 75 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE 75 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence 57999999999886 4567999999999887666533 35999998776554433
No 139
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.36 E-value=1.2 Score=42.22 Aligned_cols=30 Identities=20% Similarity=0.616 Sum_probs=23.1
Q ss_pred CCCccchhHHHHHHhcC------------CCCCCcccccCcC
Q 018355 319 CKHEFHASCVDSWLTKW------------GTFCPVCKHDMRN 348 (357)
Q Consensus 319 C~H~FH~~CI~~Wl~~~------------~~~CPlCR~~i~~ 348 (357)
|.-.++.+|+.+|+.-+ +-.||+||++..-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 56788999999998653 2369999998753
No 140
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=75.16 E-value=1.3 Score=30.48 Aligned_cols=33 Identities=21% Similarity=0.688 Sum_probs=21.7
Q ss_pred EeCC-CCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 316 VLSC-KHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 316 ~LpC-~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...| .|..+-.|+..-|.... .||+|..+++.+
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~-~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSD-RCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSS-EETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhcccc-CCCcccCcCccc
Confidence 4458 59999999999888766 599999998754
No 141
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.68 E-value=1.3 Score=47.35 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=34.4
Q ss_pred CCCcccccccccccCC----CceEEeCCCCccchhHHHHHHhcCCCCCCcc
Q 018355 296 HGGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (357)
...+.|.-|++..... +.+.++-|+|.||+.|+..-..+++ |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChh
Confidence 3445899999886533 4688899999999999987777755 6665
No 142
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=74.58 E-value=5.3 Score=43.03 Aligned_cols=37 Identities=32% Similarity=0.374 Sum_probs=33.9
Q ss_pred CcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccC
Q 018355 146 DHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDRE 182 (357)
Q Consensus 146 ~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~ 182 (357)
..++|+|++-|.=++..|+.||+++||.+||+|.+..
T Consensus 183 ~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~ 219 (702)
T KOG2195|consen 183 LSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPY 219 (702)
T ss_pred ccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccc
Confidence 5689999999999999999999999999999998743
No 143
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=73.87 E-value=1.9 Score=39.93 Aligned_cols=48 Identities=27% Similarity=0.625 Sum_probs=36.2
Q ss_pred CCcccccccccccCC-C-ceEEeC-CCCccchhHHHHHHhcCCCCCC--cccc
Q 018355 297 GGETCAICLEDYQDG-E-KLKVLS-CKHEFHASCVDSWLTKWGTFCP--VCKH 344 (357)
Q Consensus 297 ~~~~CaICLe~f~~~-~-~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CP--lCR~ 344 (357)
.+..|+||-.+-=.. | ++-+-| |-|..|.+|++.-|......|| -|-.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 356899999884333 2 344447 9999999999999999776799 6743
No 144
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=73.17 E-value=3.6 Score=25.93 Aligned_cols=38 Identities=24% Similarity=0.574 Sum_probs=25.7
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018355 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
.|..|-+.+..++.. +..=+..||.+|+ .|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf---------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF---------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC---------CCcccCCcCc
Confidence 377888877766322 2233789999983 5888887664
No 145
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=73.01 E-value=4.4 Score=39.19 Aligned_cols=71 Identities=21% Similarity=0.455 Sum_probs=47.0
Q ss_pred cchhHHhhccccccccCCCCCCCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCccccc
Q 018355 274 LDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHD 345 (357)
Q Consensus 274 l~~~~i~~lp~~~~~~~~~~~~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (357)
+.+....-+|...|.+...........|-.|.++.+.....+.-.|.|.|+.+|=. .+-..=..||-|.+.
T Consensus 306 LARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 306 LARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHESLHNCPGCEHK 376 (378)
T ss_pred HHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchH-HHHhhhhcCCCcCCC
Confidence 33444444676667665555455566799998888887777777799999999922 121111249999743
No 146
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=70.31 E-value=2.4 Score=39.89 Aligned_cols=51 Identities=18% Similarity=0.444 Sum_probs=36.4
Q ss_pred CCCcccccccccccCCCceEEe-C---CCCccchhHHHHHHhc-C-------CCCCCcccccC
Q 018355 296 HGGETCAICLEDYQDGEKLKVL-S---CKHEFHASCVDSWLTK-W-------GTFCPVCKHDM 346 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~L-p---C~H~FH~~CI~~Wl~~-~-------~~~CPlCR~~i 346 (357)
....+|.+|.+++.+.+..+.+ | |.-.+|..|+..-+.. . ...||.|++.+
T Consensus 180 ~~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 180 ALNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred ccchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 3457999999999665555444 2 8889999999984333 1 22599998754
No 147
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=65.82 E-value=5.7 Score=33.56 Aligned_cols=51 Identities=25% Similarity=0.544 Sum_probs=35.0
Q ss_pred CCcccccccccccCCCceEEe-C---CCCccchhHHHHHHhcC--CCCCCcccccCcCCC
Q 018355 297 GGETCAICLEDYQDGEKLKVL-S---CKHEFHASCVDSWLTKW--GTFCPVCKHDMRNNS 350 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~L-p---C~H~FH~~CI~~Wl~~~--~~~CPlCR~~i~~~~ 350 (357)
.-.+|.||-|.-.+. |.| | ||-..+.-|--...+.. -..||.|+...-...
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 467999999986665 344 4 89888888754433332 236999999875543
No 148
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=64.85 E-value=11 Score=27.63 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=33.7
Q ss_pred eEEEEEcCCCChHHHHHHHHH-cCCcEEEEecccCcccccccccCCCcceeeEEEeehh
Q 018355 149 NFVLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLE 206 (357)
Q Consensus 149 ~I~LV~RG~CsF~~K~~~Aq~-aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~is~~ 206 (357)
+|.|..+-+|.+-.|++.+.+ .|..... .|...+...-.+.......++|.++|..+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~-~~v~~~~~~~~~~~~~g~~~vP~ifi~g~ 59 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEE-IPLGKDITGRSLRAVTGAMTVPQVFIDGE 59 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEE-EECCCChhHHHHHHHhCCCCcCeEEECCE
Confidence 578889999999999999875 4555433 33222111111111112247899988753
No 149
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=64.56 E-value=7.5 Score=27.04 Aligned_cols=41 Identities=24% Similarity=0.660 Sum_probs=19.6
Q ss_pred ccccccccccCCCceEEeCCCCccchhH--HHHHHhcC----CCCCCccccc
Q 018355 300 TCAICLEDYQDGEKLKVLSCKHEFHASC--VDSWLTKW----GTFCPVCKHD 345 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~C--I~~Wl~~~----~~~CPlCR~~ 345 (357)
.|+|....++. .+|-..|.|. +| ++.||..+ .-.||+|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~~C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKNCKHL---QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT--SS-----EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCcCccc---ceECHHHHHHHhhccCCeECcCCcCc
Confidence 57777776555 5787789987 45 34555553 2259999864
No 150
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=63.81 E-value=14 Score=26.77 Aligned_cols=29 Identities=34% Similarity=0.474 Sum_probs=20.2
Q ss_pred CCchhhhhhhhhhhHHHHhhHHHHHHHHH
Q 018355 54 CSNSQRAEGAKQESKMREKFLMKFLIIYL 82 (357)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (357)
||+.=|.+-.|..++|++.+.+++.++++
T Consensus 20 CS~~C~~~~~k~qk~~~~~~~i~~~~~i~ 48 (59)
T PF09889_consen 20 CSPKCREEYRKRQKRMRKTQYIFFGIFIL 48 (59)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888777666555444
No 151
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.84 E-value=4.8 Score=40.98 Aligned_cols=38 Identities=32% Similarity=0.753 Sum_probs=32.5
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC
Q 018355 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW 335 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~ 335 (357)
....+|-||.+.+.. .+..+.|+|.|+..|....+.++
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 456799999999877 56677899999999999998883
No 152
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=61.75 E-value=4.3 Score=40.70 Aligned_cols=35 Identities=23% Similarity=0.621 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhc
Q 018355 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK 334 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~ 334 (357)
+.-.|+||..-|++. .+|||+|..+..|-..-+.+
T Consensus 3 eelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 456899999998886 68999999999998876665
No 153
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.65 E-value=6.4 Score=37.51 Aligned_cols=36 Identities=33% Similarity=0.626 Sum_probs=29.3
Q ss_pred eEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 314 LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 314 vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
+.+=||+|--|.+|++.-+..+...||-|-..+..+
T Consensus 18 ~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 18 LMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred eeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 334489999999999999999887899997655433
No 154
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.81 E-value=5 Score=37.21 Aligned_cols=34 Identities=18% Similarity=0.482 Sum_probs=25.6
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHh
Q 018355 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLT 333 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~ 333 (357)
..|.-|..-= .++....+.|+|+||..|...=..
T Consensus 4 VhCn~C~~~~-~~~~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 4 VHCNKCFRFP-SQDPFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred EEeccccccC-CCCceeeeechhhhhhhhcccCCc
Confidence 4577776543 378899999999999999765444
No 155
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=59.38 E-value=4.2 Score=27.84 Aligned_cols=45 Identities=27% Similarity=0.668 Sum_probs=29.9
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhc-----CCCCCCcccc
Q 018355 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK-----WGTFCPVCKH 344 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~-----~~~~CPlCR~ 344 (357)
.|.||-..-..++.|.--.|+..||..|+..=... ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 48899985555554444469999999998653331 1345888864
No 156
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=57.01 E-value=16 Score=27.46 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=35.2
Q ss_pred cceEEEEEcCCCChHHHHHHHHH-cCCcEEEEecccCcccccccccCCCcceeeEEEeehh
Q 018355 147 HINFVLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLE 206 (357)
Q Consensus 147 ~~~I~LV~RG~CsF~~K~~~Aq~-aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~is~~ 206 (357)
+..|.|..+-+|.+-.+++..-+ .|..... +|-..+.....+.......++|++++...
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~-idi~~~~~~~~~~~~~g~~~vP~i~i~g~ 66 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEE-IPLGNDARGRSLRAVTGATTVPQVFIGGK 66 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEE-EECCCChHHHHHHHHHCCCCcCeEEECCE
Confidence 56899999999999999998764 5655444 33221111111111111247899888643
No 157
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=56.94 E-value=12 Score=36.16 Aligned_cols=55 Identities=18% Similarity=0.401 Sum_probs=37.4
Q ss_pred CCCCcccccccccc---------------cCC-CceEEeCCCCccchhHHHHHHhcC--------CCCCCcccccCcCC
Q 018355 295 CHGGETCAICLEDY---------------QDG-EKLKVLSCKHEFHASCVDSWLTKW--------GTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f---------------~~~-~~vr~LpC~H~FH~~CI~~Wl~~~--------~~~CPlCR~~i~~~ 349 (357)
.....+|++|+..= ..| -....-||||+--++-..-|-+.. ...||.|-+.+..+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 44567999999861 111 123456899998888888887761 23599998877543
No 158
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=55.83 E-value=6 Score=36.04 Aligned_cols=42 Identities=26% Similarity=0.796 Sum_probs=33.3
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcc
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (357)
-..|.+|-+-.-.+ +|.=.|+-.||..|+...+++.. .||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~-~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRD-ICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccC-cCCch
Confidence 45899998875444 34446888999999999999954 69999
No 159
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=55.81 E-value=8.2 Score=41.38 Aligned_cols=40 Identities=28% Similarity=0.538 Sum_probs=27.2
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCc
Q 018355 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPV 341 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPl 341 (357)
.|.+|-.-.. |..+-.--|+|.=|.+|+.+|+..+.. ||.
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~-ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASP-CAK 820 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCC-Ccc
Confidence 6777744322 211222239999999999999999875 876
No 160
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=55.03 E-value=10 Score=26.42 Aligned_cols=40 Identities=20% Similarity=0.489 Sum_probs=27.9
Q ss_pred cccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCC
Q 018355 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 301 CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (357)
|+-|-+.+..++.+ +..-+..||.+| ..|-.|+++|....
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C---------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC---------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT---------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc---------cccCCCCCccCCCe
Confidence 66777777755432 335788999988 35888888886653
No 161
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.77 E-value=8.6 Score=35.86 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW 335 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~ 335 (357)
..+.+.|+.||..+... .+.|=||+|.++||-+.+..+
T Consensus 40 iK~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP---VITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred cCCcceeeeecccccCC---ccCCCCeeeeHHHHHHHHHHH
Confidence 45688999999998775 567789999999999887653
No 162
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=53.85 E-value=6.3 Score=25.48 Aligned_cols=26 Identities=27% Similarity=0.677 Sum_probs=17.0
Q ss_pred cccccccccccCCCc--------eEEeCCCCccc
Q 018355 299 ETCAICLEDYQDGEK--------LKVLSCKHEFH 324 (357)
Q Consensus 299 ~~CaICLe~f~~~~~--------vr~LpC~H~FH 324 (357)
.+|+=|...|+..|. ++--.|+|+|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 368888888876653 34444778775
No 163
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=53.52 E-value=3.1 Score=39.92 Aligned_cols=39 Identities=28% Similarity=0.605 Sum_probs=32.7
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCC
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG 336 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~ 336 (357)
..+|.+|+++|..+.....+.|.-+||..|+..|+.+..
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ceecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 349999999999876667777666999999999999854
No 164
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.74 E-value=17 Score=34.03 Aligned_cols=51 Identities=14% Similarity=0.334 Sum_probs=36.0
Q ss_pred CCCcccccccccccCCCceEEe-CCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 296 HGGETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.....|+|=--+|........| +|||+|-..-+.+-= ...|++|...+.+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQED 160 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCccccc
Confidence 3455899877777665444444 699999999887732 23599998876553
No 165
>PF15435 UNC119_bdg: UNC119-binding protein C5orf30 homologue
Probab=48.15 E-value=9.1 Score=33.10 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=21.3
Q ss_pred ccCCCccccCCCchhhhhhhhhhhHHHHhh
Q 018355 44 LDAPFCSSEICSNSQRAEGAKQESKMREKF 73 (357)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
.+-|-|||.||||-||--.--|---|.+-.
T Consensus 27 aekPRCsSTPCSPir~tVsGYQILHMdsNy 56 (197)
T PF15435_consen 27 AEKPRCSSTPCSPIRRTVSGYQILHMDSNY 56 (197)
T ss_pred cCCCCcCCCCCchhhccccceEEEeeccce
Confidence 457999999999998866555544444433
No 166
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.92 E-value=13 Score=29.45 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=28.9
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHH
Q 018355 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSW 331 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~W 331 (357)
.-.|.||-++..+|++...++ .-..|.+|+..=
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s 38 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAES 38 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHH
Confidence 458999999999999999889 778899998763
No 167
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.07 E-value=12 Score=22.47 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=10.2
Q ss_pred ccccccccccCCCceEEeC-CCCcc
Q 018355 300 TCAICLEDYQDGEKLKVLS-CKHEF 323 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~Lp-C~H~F 323 (357)
.|+-|-.+.... .+.-| |||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 455555554332 23334 55555
No 168
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.41 E-value=5.9 Score=37.80 Aligned_cols=48 Identities=31% Similarity=0.650 Sum_probs=38.8
Q ss_pred CcccccccccccCCC---ceEEeC--------CCCccchhHHHHHHhcCCCCCCccccc
Q 018355 298 GETCAICLEDYQDGE---KLKVLS--------CKHEFHASCVDSWLTKWGTFCPVCKHD 345 (357)
Q Consensus 298 ~~~CaICLe~f~~~~---~vr~Lp--------C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (357)
...|.||...|...+ .-+++. |+|..+..|++.=+.+....||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 468999999998432 345667 999999999999888766679999864
No 169
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.94 E-value=40 Score=27.70 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=29.2
Q ss_pred CcccccccccccCCC-----------ceEEeCCCCccchhHHHHHHhcCCCCCCccc
Q 018355 298 GETCAICLEDYQDGE-----------KLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 343 (357)
Q Consensus 298 ~~~CaICLe~f~~~~-----------~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR 343 (357)
...|--|+..|.... ..+--.|++.|+.+|=.-+-+.=. .||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh-~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLH-CCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhcc-CCcCCC
Confidence 457999999886531 122334999999999333333323 399996
No 170
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=40.37 E-value=3.8 Score=39.55 Aligned_cols=27 Identities=11% Similarity=0.487 Sum_probs=19.3
Q ss_pred ceeeeehhhHHHHhhhhccccCCCCCC
Q 018355 236 LMVSVFSLIVVFALFAVAFITPRPWRP 262 (357)
Q Consensus 236 m~IsfI~llvi~~vlli~~~~~r~r~~ 262 (357)
+..+++++++|+++++++|++.|+||.
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRK 284 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRK 284 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888887777653
No 171
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=40.37 E-value=6.1 Score=38.84 Aligned_cols=27 Identities=11% Similarity=0.487 Sum_probs=21.1
Q ss_pred ceeeeehhhHHHHhhhhccccCCCCCC
Q 018355 236 LMVSVFSLIVVFALFAVAFITPRPWRP 262 (357)
Q Consensus 236 m~IsfI~llvi~~vlli~~~~~r~r~~ 262 (357)
+..+++++++++++++++|++.|+|+.
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456777888888888888888888755
No 172
>PF15102 TMEM154: TMEM154 protein family
Probab=38.95 E-value=18 Score=31.18 Aligned_cols=9 Identities=22% Similarity=0.793 Sum_probs=6.5
Q ss_pred hHHHHHHhc
Q 018355 326 SCVDSWLTK 334 (357)
Q Consensus 326 ~CI~~Wl~~ 334 (357)
+=||+|..+
T Consensus 128 eeldkwm~s 136 (146)
T PF15102_consen 128 EELDKWMNS 136 (146)
T ss_pred HHHHhHHHh
Confidence 347888877
No 173
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.90 E-value=15 Score=36.86 Aligned_cols=45 Identities=27% Similarity=0.538 Sum_probs=32.4
Q ss_pred CCcccccccccccCCCceEEe--CCCCccchhHHHHHHhcCCCCCCcc
Q 018355 297 GGETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSWLTKWGTFCPVC 342 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~L--pC~H~FH~~CI~~Wl~~~~~~CPlC 342 (357)
....|++|.-.++..+-.... .|+|.|+..|...|...+.. |..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~-~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGE-CYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCcc-ccCc
Confidence 356888888776655433333 38999999999999888663 6555
No 174
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=38.87 E-value=19 Score=21.99 Aligned_cols=29 Identities=21% Similarity=0.602 Sum_probs=11.0
Q ss_pred ccccccccccCCCceEEeCCCCccchhHH
Q 018355 300 TCAICLEDYQDGEKLKVLSCKHEFHASCV 328 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI 328 (357)
.|.+|-+....+-..+-..|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57888887666444556678999999885
No 175
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=38.75 E-value=55 Score=23.80 Aligned_cols=55 Identities=18% Similarity=0.027 Sum_probs=33.7
Q ss_pred ceEEEEEcCCCChHHHHHHHH-HcCCcEEEEecccCccc----ccccccCCCcceeeEEEeehh
Q 018355 148 INFVLIVRGQCIFEDKIRNAQ-AAGYRAAIVYNDREKGS----LVSMTASHEGVKVHAIFVSLE 206 (357)
Q Consensus 148 ~~I~LV~RG~CsF~~K~~~Aq-~aGA~avIv~~~~~~~~----~~~m~~~~~~i~Ip~v~is~~ 206 (357)
++|.|..+.+|++-.|++.+- +.|..... +|-..+.. +..+.+ ..++|.+++..+
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~-~di~~~~~~~~el~~~~g---~~~vP~v~i~~~ 60 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVE-INIDIFPERKAELEERTG---SSVVPQIFFNEK 60 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEE-EECCCCHHHHHHHHHHhC---CCCcCEEEECCE
Confidence 367888899999999999855 56766444 34322211 111111 246788888753
No 176
>PTZ00046 rifin; Provisional
Probab=38.65 E-value=6.8 Score=38.63 Aligned_cols=27 Identities=15% Similarity=0.484 Sum_probs=21.0
Q ss_pred ceeeeehhhHHHHhhhhccccCCCCCC
Q 018355 236 LMVSVFSLIVVFALFAVAFITPRPWRP 262 (357)
Q Consensus 236 m~IsfI~llvi~~vlli~~~~~r~r~~ 262 (357)
+..+++++++++++++++|++.|+|+.
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456777888888888888888888755
No 177
>PLN02189 cellulose synthase
Probab=38.01 E-value=41 Score=37.82 Aligned_cols=52 Identities=23% Similarity=0.539 Sum_probs=35.8
Q ss_pred CCCccccccccccc---CCCceEEe-CCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018355 296 HGGETCAICLEDYQ---DGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 296 ~~~~~CaICLe~f~---~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
...+.|.||-++.. +||.-..- -|+--.|+.|.+-=-+..+..||-||....
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34679999999964 34433222 388889999986433333446999998775
No 178
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.76 E-value=20 Score=31.09 Aligned_cols=49 Identities=20% Similarity=0.445 Sum_probs=32.9
Q ss_pred ccccccccCCCceEEeC-CCCccchhHHHHHHhcCCCCCCcccccCcCCCCCCC
Q 018355 302 AICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNE 354 (357)
Q Consensus 302 aICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~~ 354 (357)
.||+.--...+.+-.-| =.|-||.+|=.+-..+ ||.|..+|.-.-..++
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~~----Cp~C~~~IrG~y~v~g 57 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTITS----CPNCSTPIRGDYHVEG 57 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHHH----CcCCCCCCCCceecCC
Confidence 46766544444443333 2578999998886655 9999999987655544
No 179
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.73 E-value=8.4 Score=27.04 Aligned_cols=12 Identities=25% Similarity=0.963 Sum_probs=6.0
Q ss_pred CCCcccccCcCC
Q 018355 338 FCPVCKHDMRNN 349 (357)
Q Consensus 338 ~CPlCR~~i~~~ 349 (357)
.||+|.+++.+.
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 599999888654
No 180
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=37.69 E-value=73 Score=23.93 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=35.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHc-----CCcEEEEecccCc----ccccccccCCCcceeeEEEeehh
Q 018355 149 NFVLIVRGQCIFEDKIRNAQAA-----GYRAAIVYNDREK----GSLVSMTASHEGVKVHAIFVSLE 206 (357)
Q Consensus 149 ~I~LV~RG~CsF~~K~~~Aq~a-----GA~avIv~~~~~~----~~~~~m~~~~~~i~Ip~v~is~~ 206 (357)
+|.+.-+.+|.+-.|++..-+. ........|-..+ +.+..+.+. ...++|.++|..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~-~~~~vP~ifi~g~ 67 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK-PVETVPQIFVDQK 67 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC-CCCcCCEEEECCE
Confidence 5788889999999999998776 3334444443221 122222232 1147899998643
No 181
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=37.46 E-value=12 Score=30.01 Aligned_cols=15 Identities=13% Similarity=0.735 Sum_probs=6.2
Q ss_pred cceeeeehhhHHHHh
Q 018355 235 VLMVSVFSLIVVFAL 249 (357)
Q Consensus 235 im~IsfI~llvi~~v 249 (357)
.++++++++++++.+
T Consensus 63 iili~lls~v~IlVi 77 (101)
T PF06024_consen 63 IILISLLSFVCILVI 77 (101)
T ss_pred chHHHHHHHHHHHHH
Confidence 344444444444333
No 182
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=37.42 E-value=4.2 Score=28.60 Aligned_cols=14 Identities=21% Similarity=0.641 Sum_probs=10.1
Q ss_pred CcccccccccccCC
Q 018355 298 GETCAICLEDYQDG 311 (357)
Q Consensus 298 ~~~CaICLe~f~~~ 311 (357)
...|+.|-++|...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 45799998866553
No 183
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.39 E-value=20 Score=22.56 Aligned_cols=7 Identities=57% Similarity=1.531 Sum_probs=5.7
Q ss_pred CCCcccc
Q 018355 338 FCPVCKH 344 (357)
Q Consensus 338 ~CPlCR~ 344 (357)
.||+|..
T Consensus 19 ~CP~Cg~ 25 (33)
T cd00350 19 VCPVCGA 25 (33)
T ss_pred cCcCCCC
Confidence 5999965
No 184
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=36.02 E-value=12 Score=30.10 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=16.8
Q ss_pred cccceeeeehhhHHHHhhhhccccCCCC
Q 018355 233 WSVLMVSVFSLIVVFALFAVAFITPRPW 260 (357)
Q Consensus 233 ~~im~IsfI~llvi~~vlli~~~~~r~r 260 (357)
..+.+++|+++++++.++.-|+++|.++
T Consensus 64 ili~lls~v~IlVily~IyYFVILRer~ 91 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFVILRERQ 91 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEEEEeccc
Confidence 3455666777777777766555554443
No 185
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.48 E-value=28 Score=33.73 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=37.6
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC--CCCCCcc
Q 018355 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW--GTFCPVC 342 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~--~~~CPlC 342 (357)
..+-..|++=-|.-.+.+.-..|.|||+.-++-++..-+.. +..||.|
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 45567999988877777777889999999999999855442 2359999
No 186
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.30 E-value=57 Score=23.41 Aligned_cols=48 Identities=23% Similarity=0.562 Sum_probs=31.8
Q ss_pred cccccccccccCCC-ceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 299 ETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 299 ~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..|-.|-.++..+. .-++-.=...|+.+|.+.-|.. .||.|--.+...
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~---~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG---VCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC---cCcCCCCccccC
Confidence 45667777776654 2233221347999999997633 599998877654
No 187
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=35.21 E-value=13 Score=37.14 Aligned_cols=48 Identities=21% Similarity=0.519 Sum_probs=0.4
Q ss_pred CCCCccccccccccc-----------CCCceEEeCCCCccchhHHHHHHhcC-----CCCCCccccc
Q 018355 295 CHGGETCAICLEDYQ-----------DGEKLKVLSCKHEFHASCVDSWLTKW-----GTFCPVCKHD 345 (357)
Q Consensus 295 ~~~~~~CaICLe~f~-----------~~~~vr~LpC~H~FH~~CI~~Wl~~~-----~~~CPlCR~~ 345 (357)
.....+|++=|..+. +.+.-.-|.|||++- ...|-... ...||+||..
T Consensus 274 Na~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG---~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 274 NAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHG---YHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp S------------------------------------------------------------------
T ss_pred hhcCCCCCcCCCccccccccccccccccCceeeccccceee---ecccccccccccccccCCCcccc
Confidence 334556776665542 223345677999754 23564421 2359999864
No 188
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=34.96 E-value=83 Score=23.78 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=35.1
Q ss_pred eEEEEEcCCCChHHHHHHHH-HcCCcEEEEecccCc-ccccccccCC-CcceeeEEEeeh
Q 018355 149 NFVLIVRGQCIFEDKIRNAQ-AAGYRAAIVYNDREK-GSLVSMTASH-EGVKVHAIFVSL 205 (357)
Q Consensus 149 ~I~LV~RG~CsF~~K~~~Aq-~aGA~avIv~~~~~~-~~~~~m~~~~-~~i~Ip~v~is~ 205 (357)
.|.+..+-+|.|-.|++++. +.|.....|..+... ...-.|.... ...++|.++|..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 35566677799999999877 568776654443322 1221222211 235889999987
No 189
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=34.89 E-value=78 Score=24.32 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=32.4
Q ss_pred ceEEEEEcC-----CCChHHHHHHHH-HcCCcEEEEecccCcccccc-cccCCCcceeeEEEeehh
Q 018355 148 INFVLIVRG-----QCIFEDKIRNAQ-AAGYRAAIVYNDREKGSLVS-MTASHEGVKVHAIFVSLE 206 (357)
Q Consensus 148 ~~I~LV~RG-----~CsF~~K~~~Aq-~aGA~avIv~~~~~~~~~~~-m~~~~~~i~Ip~v~is~~ 206 (357)
.+|++...| .|.|-.|++..- +.|...-. +|-..+..... +......-++|.+||...
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~-idv~~~~~~~~~l~~~~g~~tvP~vfi~g~ 72 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGT-FDILEDEEVRQGLKEYSNWPTFPQLYVNGE 72 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEE-EEcCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence 467777665 899999998866 45655333 34222211111 111111247899998754
No 190
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=33.86 E-value=24 Score=26.14 Aligned_cols=13 Identities=23% Similarity=0.879 Sum_probs=9.6
Q ss_pred ccchhHHHHHHhc
Q 018355 322 EFHASCVDSWLTK 334 (357)
Q Consensus 322 ~FH~~CI~~Wl~~ 334 (357)
.||+.|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
No 191
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=33.44 E-value=14 Score=36.82 Aligned_cols=52 Identities=19% Similarity=0.447 Sum_probs=0.0
Q ss_pred CCcccccccccc--------------cCC--CceEEeCCCCccchhHHHHHHhc---C-----CCCCCcccccCcC
Q 018355 297 GGETCAICLEDY--------------QDG--EKLKVLSCKHEFHASCVDSWLTK---W-----GTFCPVCKHDMRN 348 (357)
Q Consensus 297 ~~~~CaICLe~f--------------~~~--~~vr~LpC~H~FH~~CI~~Wl~~---~-----~~~CPlCR~~i~~ 348 (357)
...+|++|+..- .+. -....-||||+--.+...-|-+. | +..||.|-..|..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 367999999761 111 12456689999888888889776 2 2369999887763
No 192
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=32.47 E-value=16 Score=32.16 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=10.5
Q ss_pred ehhhHHHHhhhhccccCCCCCCC
Q 018355 241 FSLIVVFALFAVAFITPRPWRPW 263 (357)
Q Consensus 241 I~llvi~~vlli~~~~~r~r~~~ 263 (357)
++++.+.++++++|+++.+|.++
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444445555444443
No 193
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=31.90 E-value=21 Score=26.02 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=17.7
Q ss_pred CCcccccccccccCCCc-eEEeCCCCccchhHHHHHH
Q 018355 297 GGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWL 332 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl 332 (357)
+...|.+|..+|..-.. ..---||++|+.+|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 46799999999965421 1112389999999976543
No 194
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=31.18 E-value=52 Score=25.21 Aligned_cols=53 Identities=25% Similarity=0.530 Sum_probs=21.5
Q ss_pred CCCcccccccccccC---CCc-eEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 296 HGGETCAICLEDYQD---GEK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 296 ~~~~~CaICLe~f~~---~~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
.....|-||=++.-. |+. |..--|+--.++.|.+-=.+..+..||-|+.....
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 346899999998633 332 22234788889999876555544469999987654
No 195
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=31.17 E-value=31 Score=24.15 Aligned_cols=22 Identities=45% Similarity=0.904 Sum_probs=12.4
Q ss_pred CCCccchhHHHHHHhcCCCCCCcc
Q 018355 319 CKHEFHASCVDSWLTKWGTFCPVC 342 (357)
Q Consensus 319 C~H~FH~~CI~~Wl~~~~~~CPlC 342 (357)
|+|.|...=-+.- .....||.|
T Consensus 34 Cgh~w~~~v~~R~--~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDRT--RRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhhc--cCCCCCCCC
Confidence 6777665533332 233459988
No 196
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=30.92 E-value=69 Score=23.25 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=29.1
Q ss_pred EEEEcCCCChHHHHHHHHH-cCCcEEEEecccCcccccccccCCCcceeeEEEee
Q 018355 151 VLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVS 204 (357)
Q Consensus 151 ~LV~RG~CsF~~K~~~Aq~-aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~is 204 (357)
.|..+-+|.+-.|++.+-+ .|-..-. .|-..+..............+|++++.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i~~~~-~di~~~~~~~~~~~~~g~~~vP~v~~~ 55 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGIAFEE-INIDEQPEAIDYVKAQGFRQVPVIVAD 55 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCceEE-EECCCCHHHHHHHHHcCCcccCEEEEC
Confidence 4566788999999999664 4544333 343222211111111112478888885
No 197
>PRK10824 glutaredoxin-4; Provisional
Probab=30.75 E-value=61 Score=26.66 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=34.4
Q ss_pred cceEEEEEcC-----CCChHHHHHHHH-HcCCcEEEEecccCcccc-cccccCCCcceeeEEEeehhh
Q 018355 147 HINFVLIVRG-----QCIFEDKIRNAQ-AAGYRAAIVYNDREKGSL-VSMTASHEGVKVHAIFVSLET 207 (357)
Q Consensus 147 ~~~I~LV~RG-----~CsF~~K~~~Aq-~aGA~avIv~~~~~~~~~-~~m~~~~~~i~Ip~v~is~~~ 207 (357)
...|++...| .|.|..+++..- +.|...-. +|-.++... -.+..-...-++|-|||..+-
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~-idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~ 80 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAY-VDILQNPDIRAELPKYANWPTFPQLWVDGEL 80 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceE-EEecCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 3578888887 899999998876 56755322 222111111 111111122488999998654
No 198
>PRK10638 glutaredoxin 3; Provisional
Probab=30.39 E-value=78 Score=23.69 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=33.4
Q ss_pred eEEEEEcCCCChHHHHHHHH-HcCCcEEEEecccCcccc-cccccCCCcceeeEEEeeh
Q 018355 149 NFVLIVRGQCIFEDKIRNAQ-AAGYRAAIVYNDREKGSL-VSMTASHEGVKVHAIFVSL 205 (357)
Q Consensus 149 ~I~LV~RG~CsF~~K~~~Aq-~aGA~avIv~~~~~~~~~-~~m~~~~~~i~Ip~v~is~ 205 (357)
+|.|..+-.|.|-.|++.+- +.|....++ |-..+... -.+.......++|++++..
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~-dv~~~~~~~~~l~~~~g~~~vP~i~~~g 60 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEI-PIDGDAAKREEMIKRSGRTTVPQIFIDA 60 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEE-ECCCCHHHHHHHHHHhCCCCcCEEEECC
Confidence 57788889999999999876 467665554 32221111 1111111124789998864
No 199
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.05 E-value=14 Score=28.93 Aligned_cols=18 Identities=11% Similarity=0.336 Sum_probs=7.0
Q ss_pred eeehhhHHHHhhhhcccc
Q 018355 239 SVFSLIVVFALFAVAFIT 256 (357)
Q Consensus 239 sfI~llvi~~vlli~~~~ 256 (357)
.|+++..++.++++.|++
T Consensus 36 ~~lvI~~iFil~Vilwfv 53 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFV 53 (94)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344443443333333333
No 200
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=29.46 E-value=25 Score=22.75 Aligned_cols=26 Identities=27% Similarity=0.650 Sum_probs=16.4
Q ss_pred cccccccccccCCC--------ceEEeCCCCccc
Q 018355 299 ETCAICLEDYQDGE--------KLKVLSCKHEFH 324 (357)
Q Consensus 299 ~~CaICLe~f~~~~--------~vr~LpC~H~FH 324 (357)
.+|+=|-..|+..+ +||---|+|+|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 36788888776654 234334777775
No 201
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=29.02 E-value=36 Score=23.93 Aligned_cols=42 Identities=29% Similarity=0.674 Sum_probs=18.9
Q ss_pred cccccccccCCC------ceEEeC-CCCccchhHHHHHHhcCCCCCCccc
Q 018355 301 CAICLEDYQDGE------KLKVLS-CKHEFHASCVDSWLTKWGTFCPVCK 343 (357)
Q Consensus 301 CaICLe~f~~~~------~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR 343 (357)
|--|+..|.... ..-.-| |++.|+-+| |-.+-..=..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 556777776652 122233 999999998 222222112499884
No 202
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=28.65 E-value=92 Score=24.54 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=35.1
Q ss_pred cceEEEEEcCCCChHHHHHHHHH-cCCcEE-EEecccCc-ccccc-cccCCCcceeeEEEeehh
Q 018355 147 HINFVLIVRGQCIFEDKIRNAQA-AGYRAA-IVYNDREK-GSLVS-MTASHEGVKVHAIFVSLE 206 (357)
Q Consensus 147 ~~~I~LV~RG~CsF~~K~~~Aq~-aGA~av-Iv~~~~~~-~~~~~-m~~~~~~i~Ip~v~is~~ 206 (357)
...|++..+..|.|-.+++...+ .|...- +-+|..++ ..... +..-...-++|.++|..+
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~ 70 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGK 70 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCE
Confidence 35789999999999999999874 565433 22332211 11111 111111248899999864
No 203
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=28.63 E-value=82 Score=21.78 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=30.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccc-ccccCCCcceeeEEEee
Q 018355 150 FVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLV-SMTASHEGVKVHAIFVS 204 (357)
Q Consensus 150 I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~-~m~~~~~~i~Ip~v~is 204 (357)
|.|..+..|.+-.|++.+.+.-......+|-..+.... .+..-....++|++++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~ 57 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFIN 57 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 56777888999999998765433444444433222111 11110112467777764
No 204
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=28.45 E-value=30 Score=32.13 Aligned_cols=10 Identities=80% Similarity=1.182 Sum_probs=7.4
Q ss_pred eEEEecCccc
Q 018355 4 YYYISTSRGW 13 (357)
Q Consensus 4 ~~~~~~~~~~ 13 (357)
|||||||-|=
T Consensus 127 YY~IStStg~ 136 (233)
T KOG3858|consen 127 YYYISTSTGD 136 (233)
T ss_pred EEEEeCCCcc
Confidence 7888887663
No 205
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=28.24 E-value=24 Score=34.16 Aligned_cols=44 Identities=23% Similarity=0.647 Sum_probs=27.2
Q ss_pred CCCccccccccccc-----------CCCceEEeCCCCc--cchhHHHHHHhc-----CCCCCCcccc
Q 018355 296 HGGETCAICLEDYQ-----------DGEKLKVLSCKHE--FHASCVDSWLTK-----WGTFCPVCKH 344 (357)
Q Consensus 296 ~~~~~CaICLe~f~-----------~~~~vr~LpC~H~--FH~~CI~~Wl~~-----~~~~CPlCR~ 344 (357)
....+|++=|..+. +.+.-.-|.|||+ +| .|=.+ +...||+||.
T Consensus 288 A~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 288 AARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH-----NWGVRENTGQRERECPMCRV 349 (429)
T ss_pred ccCCCCCcccceeecccccccccccccCCeEEEecccccccc-----ccccccccCcccCcCCeeee
Confidence 34557877776642 2334567889986 66 45433 1236999985
No 206
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=27.27 E-value=28 Score=25.68 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=0.5
Q ss_pred HhhhhccccCCCCCCCCC
Q 018355 248 ALFAVAFITPRPWRPWPG 265 (357)
Q Consensus 248 ~vlli~~~~~r~r~~~~~ 265 (357)
+++++.+++.|.|++...
T Consensus 25 ailLIlf~iyR~rkkdEG 42 (64)
T PF01034_consen 25 AILLILFLIYRMRKKDEG 42 (64)
T ss_dssp ------------S-----
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 344444555555544433
No 207
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=27.17 E-value=43 Score=24.29 Aligned_cols=13 Identities=31% Similarity=1.027 Sum_probs=9.3
Q ss_pred CCCCcccccCcCC
Q 018355 337 TFCPVCKHDMRNN 349 (357)
Q Consensus 337 ~~CPlCR~~i~~~ 349 (357)
..||+|+..+...
T Consensus 3 ~~CPlCkt~~n~g 15 (61)
T PF05715_consen 3 SLCPLCKTTLNVG 15 (61)
T ss_pred ccCCcccchhhcC
Confidence 3599998877443
No 208
>PLN02195 cellulose synthase A
Probab=27.15 E-value=79 Score=35.38 Aligned_cols=58 Identities=19% Similarity=0.406 Sum_probs=38.3
Q ss_pred CCCcccccccccccC---CCc-eEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCCCC
Q 018355 296 HGGETCAICLEDYQD---GEK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESN 353 (357)
Q Consensus 296 ~~~~~CaICLe~f~~---~~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~ 353 (357)
+..+.|.||=++... ||. |..--|+--.|+.|.+-=-+..+..||-|+....++++.+
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~~~~~ 65 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAENVFD 65 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccccccc
Confidence 346799999987643 332 3333588889999985322333346999999887544443
No 209
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.23 E-value=35 Score=24.75 Aligned_cols=14 Identities=36% Similarity=0.952 Sum_probs=10.4
Q ss_pred CCCCcccccCcCCC
Q 018355 337 TFCPVCKHDMRNNS 350 (357)
Q Consensus 337 ~~CPlCR~~i~~~~ 350 (357)
..||+|..+.....
T Consensus 40 p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 40 PVCPLCKSPMVSGT 53 (59)
T ss_pred ccCCCcCCccccce
Confidence 46999998876543
No 210
>PLN02436 cellulose synthase A
Probab=25.83 E-value=86 Score=35.46 Aligned_cols=52 Identities=27% Similarity=0.577 Sum_probs=35.6
Q ss_pred CCCcccccccccc---cCCCceEE-eCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018355 296 HGGETCAICLEDY---QDGEKLKV-LSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 296 ~~~~~CaICLe~f---~~~~~vr~-LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
...+.|-||=++. .+||.-.- --|+--.|+.|.+-=-+..+..||-||+...
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3457999999996 34443222 2378889999996433444446999998775
No 211
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=25.73 E-value=77 Score=22.79 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=32.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccc-cccc-CCCcceeeEEEeehh
Q 018355 149 NFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLV-SMTA-SHEGVKVHAIFVSLE 206 (357)
Q Consensus 149 ~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~-~m~~-~~~~i~Ip~v~is~~ 206 (357)
+|.|..+-.|++-.+++..-+.-....-.+|-..+.... .+.. .+....+|.++|..+
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV 60 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence 367778888999999999665433344444433221111 1110 111237899988753
No 212
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.54 E-value=50 Score=22.86 Aligned_cols=36 Identities=14% Similarity=0.418 Sum_probs=24.8
Q ss_pred CcccccccccccCCC-ceEEeCCCCccchhHHHHHHh
Q 018355 298 GETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLT 333 (357)
Q Consensus 298 ~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~ 333 (357)
...|.+|-..|..-. +..--.||++|+.+|...-..
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 367999988887643 222234899999999765443
No 213
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=24.84 E-value=35 Score=35.74 Aligned_cols=35 Identities=20% Similarity=0.496 Sum_probs=24.5
Q ss_pred CCCcccccccccccCC-----------CceEEeCCCCccchhHHHHH
Q 018355 296 HGGETCAICLEDYQDG-----------EKLKVLSCKHEFHASCVDSW 331 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~-----------~~vr~LpC~H~FH~~CI~~W 331 (357)
+....|+||-|.|+.- |.|.+. =|-+||..|+.+=
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 4567999999998642 123332 5789999998753
No 214
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.67 E-value=51 Score=26.22 Aligned_cols=14 Identities=29% Similarity=0.315 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHHh
Q 018355 73 FLMKFLIIYLNLCF 86 (357)
Q Consensus 73 ~~~~~~~l~~~~~~ 86 (357)
+++|.++|.++|+.
T Consensus 6 ~llL~l~LA~lLli 19 (95)
T PF07172_consen 6 FLLLGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 33433333333333
No 215
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=23.96 E-value=1.2e+02 Score=23.82 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=34.5
Q ss_pred cceEEEEEcC-----CCChHHHHHHHH-HcCCcEEEEecccCccccc-ccccCCCcceeeEEEeehhh
Q 018355 147 HINFVLIVRG-----QCIFEDKIRNAQ-AAGYRAAIVYNDREKGSLV-SMTASHEGVKVHAIFVSLET 207 (357)
Q Consensus 147 ~~~I~LV~RG-----~CsF~~K~~~Aq-~aGA~avIv~~~~~~~~~~-~m~~~~~~i~Ip~v~is~~~ 207 (357)
.++|+|..+| .|.|-.|++..- +.|...- .+|-.++.... .+..-...-++|.++|..+-
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~-~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~ 77 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFA-YVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEF 77 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEE-EEECCCCHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 3477887775 699999999876 5676644 34432221111 11100112488999998653
No 216
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.69 E-value=50 Score=31.56 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=28.3
Q ss_pred CCcccccccccccCCCceEEeC--CCCccchhHHHHHHhcC
Q 018355 297 GGETCAICLEDYQDGEKLKVLS--CKHEFHASCVDSWLTKW 335 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~Lp--C~H~FH~~CI~~Wl~~~ 335 (357)
..-.|.+|-|.+++-. ..+-| =.|.||.-|-++-++.+
T Consensus 267 apLcCTLC~ERLEDTH-FVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTH-FVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCc-eeecCCCcccceecccCHHHHHhh
Confidence 3469999999988753 23333 28999999998887774
No 217
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=23.44 E-value=1.4e+02 Score=27.21 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCcEEEEecccCcccccccccCCCcceeeEEEeehhhhhhhhhh
Q 018355 162 DKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEH 214 (357)
Q Consensus 162 ~K~~~Aq~aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~is~~~G~~L~~~ 214 (357)
+.+..|-++| +.|||+|+++.++ +.++-+|+-.++.+.=..+.+.
T Consensus 7 e~ai~al~~G-~~Viv~DdedREn-------EgDli~aAe~vT~e~i~fm~~~ 51 (203)
T COG0108 7 EEAIEALRAG-KPVIVVDDEDREN-------EGDLIFAAEAVTPEQIAFMRRH 51 (203)
T ss_pred HHHHHHHHCC-CeEEEEcCCCCCC-------cccEEEEhhhCCHHHHHHHHHh
Confidence 4556666666 8999999876442 3345667777776665555543
No 218
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.29 E-value=52 Score=31.70 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=40.8
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018355 294 QCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 294 ~~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.....+.|-||...+...+. .--|.|.|...|...|....+. ||-||..+.+.
T Consensus 101 ~~~~~~~~~~~~g~l~vpt~--~qg~w~qf~~~~p~~~~~~~~~-~~d~~~~~~pv 153 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPTR--IQGCWHQFCYVCPKSNFAMGND-CPDCRGKISPV 153 (324)
T ss_pred ccCCccceeeeeeeEEeccc--ccCceeeeeecCCchhhhhhhc-cchhhcCcCce
Confidence 35667899999988766542 2239999999999999999774 99998766543
No 219
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=23.08 E-value=77 Score=30.92 Aligned_cols=52 Identities=25% Similarity=0.521 Sum_probs=34.0
Q ss_pred CCcccccccccccCCCceEEeC--CCCccchhHHHHHHhcCCCCCCcccccCcCCC
Q 018355 297 GGETCAICLEDYQDGEKLKVLS--CKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~Lp--C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (357)
....|+||-+.....+ .-.|| |+|.-|..|...-...+. +||.||.+...+.
T Consensus 248 v~~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~-~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDG-RCPGCRKPYERNT 301 (327)
T ss_pred cCCCCCCCCCcccccc-cccccccccccchhhhhhcccccCC-CCCccCCccccCc
Confidence 4579999999875443 33566 566655556555444444 6999997765543
No 220
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=22.80 E-value=71 Score=25.47 Aligned_cols=31 Identities=29% Similarity=0.717 Sum_probs=22.5
Q ss_pred CcccccccccccCCCceEEeC--CCCccchhHHHH
Q 018355 298 GETCAICLEDYQDGEKLKVLS--CKHEFHASCVDS 330 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~Lp--C~H~FH~~CI~~ 330 (357)
...|.||... .|-.++--. |...||..|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 5699999887 454343333 788999999765
No 221
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=22.61 E-value=63 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=26.1
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHH
Q 018355 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWL 332 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl 332 (357)
.|.||-+++-.|+....++= -..|.+|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC-CcEeHHHHHHHH
Confidence 69999999999987766655 678999987643
No 222
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=22.08 E-value=48 Score=22.63 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=25.5
Q ss_pred CCCcccccccccc--cCCCceEEeCCCCccchhHHHH
Q 018355 296 HGGETCAICLEDY--QDGEKLKVLSCKHEFHASCVDS 330 (357)
Q Consensus 296 ~~~~~CaICLe~f--~~~~~vr~LpC~H~FH~~CI~~ 330 (357)
.....|.+|-+.+ ...+.++-.-|+-..|++|++.
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 3467999999988 4455677777999999999764
No 223
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.96 E-value=1.3e+02 Score=34.05 Aligned_cols=53 Identities=17% Similarity=0.471 Sum_probs=36.3
Q ss_pred CCCCcccccccccccC---CCc-eEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018355 295 CHGGETCAICLEDYQD---GEK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~---~~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
.-..+.|-||=++... ||. |..--|+--.|+.|.+-=.+..+..||-|+....
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3457899999998643 332 2333478889999996433443446999998776
No 224
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.84 E-value=1.1e+02 Score=22.22 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCCcccccccccccC--CCceEEeC-CCCccchhHHH
Q 018355 296 HGGETCAICLEDYQD--GEKLKVLS-CKHEFHASCVD 329 (357)
Q Consensus 296 ~~~~~CaICLe~f~~--~~~vr~Lp-C~H~FH~~CI~ 329 (357)
.....|+.|-...+. .+....-| ||+.+|.+---
T Consensus 26 ~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~na 62 (69)
T PF07282_consen 26 YTSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNA 62 (69)
T ss_pred CCccCccCcccccccccccceEEcCCCCCEECcHHHH
Confidence 356899999888776 34444445 88888877543
No 225
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=21.21 E-value=66 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.570 Sum_probs=20.6
Q ss_pred CceEEeCCCC--ccchhHHHHHHhcCC
Q 018355 312 EKLKVLSCKH--EFHASCVDSWLTKWG 336 (357)
Q Consensus 312 ~~vr~LpC~H--~FH~~CI~~Wl~~~~ 336 (357)
..+..|||.| .|-.+||-+=+.+|+
T Consensus 124 pr~eRL~C~HKGTYADDClv~RV~qHk 150 (195)
T KOG3165|consen 124 PRFERLPCTHKGTYADDCLVQRVTQHK 150 (195)
T ss_pred CcccccccccCCcchhhHHHHHHhhcc
Confidence 3467899999 499999999888876
No 226
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=21.05 E-value=85 Score=27.81 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=28.8
Q ss_pred CCcceEEEEEcC--CCChHHHHHHHHHcCCcEEEEecc-cCcccccccccCCCcceeeEEEeehhhhhh
Q 018355 145 ADHINFVLIVRG--QCIFEDKIRNAQAAGYRAAIVYND-REKGSLVSMTASHEGVKVHAIFVSLETGVY 210 (357)
Q Consensus 145 ~~~~~I~LV~RG--~CsF~~K~~~Aq~aGA~avIv~~~-~~~~~~~~m~~~~~~i~Ip~v~is~~~G~~ 210 (357)
...+.|.|+.|. +..-..=++..++.|...|+|..+ .+..++.......-+..+|-.+|..++|+.
T Consensus 80 t~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~~~~LvP~EdG~R 148 (172)
T PF10740_consen 80 TETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDLKLPKPLVPTEDGDR 148 (172)
T ss_dssp -TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTGGG-SSS-EE----S-SEE-TTS-E
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCchhhhhhheeecccCCCcccCCCCCE
Confidence 456799999885 444555667777889999998833 333333322222222334444555555543
No 227
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=52 Score=27.58 Aligned_cols=28 Identities=25% Similarity=0.724 Sum_probs=19.1
Q ss_pred ccchhHHHHHHhcCCCCCCcccccCcCCCCCC
Q 018355 322 EFHASCVDSWLTKWGTFCPVCKHDMRNNSESN 353 (357)
Q Consensus 322 ~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~ 353 (357)
.|+..|-+.-+.+ ||+|..+|....-.+
T Consensus 29 afcskcgeati~q----cp~csasirgd~~ve 56 (160)
T COG4306 29 AFCSKCGEATITQ----CPICSASIRGDYYVE 56 (160)
T ss_pred HHHhhhchHHHhc----CCccCCcccccceee
Confidence 4777776665444 999998887655444
No 228
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=20.54 E-value=38 Score=24.28 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHhhhccCcceEEE
Q 018355 72 KFLMKFLIIYLNLCFVVSLSSATLVW 97 (357)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~~~~vv~ 97 (357)
+++++.++|+=++.+.......|.||
T Consensus 20 ~flfl~~~l~PiL~v~~Vg~YGF~VW 45 (56)
T PF06796_consen 20 AFLFLAVVLFPILAVAFVGGYGFIVW 45 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544443444433333444444
No 230
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=20.42 E-value=1.6e+02 Score=23.15 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018355 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
....|.-|-....--|.+ | |-.|+..+.. |..|+++|+.
T Consensus 32 ~rS~C~~C~~~L~~~~lI---P---------i~S~l~lrGr-Cr~C~~~I~~ 70 (92)
T PF06750_consen 32 PRSHCPHCGHPLSWWDLI---P---------ILSYLLLRGR-CRYCGAPIPP 70 (92)
T ss_pred CCCcCcCCCCcCcccccc---h---------HHHHHHhCCC-CcccCCCCCh
Confidence 346888888877766543 3 6789888774 9999998864
No 231
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=20.21 E-value=1.9e+02 Score=21.57 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=33.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHc----CCcEEEEecccCcccccccccCCCcceeeEEEeehh
Q 018355 149 NFVLIVRGQCIFEDKIRNAQAA----GYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLE 206 (357)
Q Consensus 149 ~I~LV~RG~CsF~~K~~~Aq~a----GA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~is~~ 206 (357)
++.|..|-+|..-+.++..-+. ..-.+-.+|-.+++.+..-.+ ..||++.+...
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~----~~IPVl~~~~~ 58 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG----YRIPVLHIDGI 58 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC----TSTSEEEETT-
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc----CCCCEEEEcCc
Confidence 4788999999999999876652 223456666544334333223 37899888763
No 232
>PRK00523 hypothetical protein; Provisional
Probab=20.20 E-value=8.5 Score=29.00 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=22.4
Q ss_pred ceeeeehhhHHHHhhhhccccCCCCCCCCCCCCccccccchhHHhhc
Q 018355 236 LMVSVFSLIVVFALFAVAFITPRPWRPWPGQNQPLSRRLDSKVVEAL 282 (357)
Q Consensus 236 m~IsfI~llvi~~vlli~~~~~r~r~~~~~~~~~~~~~l~~~~i~~l 282 (357)
+.|.++++.+++.+++.||+.+++..+....+ +.++++.++.+
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l~~N----Ppine~mir~M 48 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIREN----PPITENMIRAM 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----cCCCHHHHHHH
Confidence 33444444455555666777766655544432 34555555543
Done!