Query 018357
Match_columns 357
No_of_seqs 186 out of 247
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14144 DOG1: Seed dormancy c 100.0 1.1E-34 2.4E-39 232.7 7.4 79 154-232 1-80 (80)
2 KOG3584 cAMP response element 98.5 8.2E-08 1.8E-12 93.4 4.6 34 71-104 291-324 (348)
3 smart00338 BRLZ basic region l 98.4 1.1E-06 2.4E-11 67.3 7.3 43 69-111 3-45 (65)
4 PF00170 bZIP_1: bZIP transcri 98.4 8.2E-07 1.8E-11 67.9 6.1 42 70-114 4-45 (64)
5 PF07716 bZIP_2: Basic region 98.3 2.7E-06 5.8E-11 63.3 6.7 44 69-116 3-46 (54)
6 PF13801 Metal_resist: Heavy-m 96.8 0.036 7.8E-07 44.8 12.5 85 234-331 40-124 (125)
7 COG3678 CpxP P pilus assembly/ 96.8 0.018 3.9E-07 52.3 11.2 109 209-339 34-145 (160)
8 KOG4343 bZIP transcription fac 96.6 0.0038 8.2E-08 65.7 6.3 45 68-115 275-322 (655)
9 KOG0709 CREB/ATF family transc 96.2 0.0047 1E-07 64.0 4.3 44 70-113 250-293 (472)
10 PF03131 bZIP_Maf: bZIP Maf tr 95.9 0.013 2.7E-07 48.1 4.5 32 70-101 29-60 (92)
11 PRK12750 cpxP periplasmic repr 95.1 1.1 2.3E-05 41.1 14.7 96 231-340 49-152 (170)
12 KOG0837 Transcriptional activa 93.4 0.17 3.8E-06 49.4 6.0 30 71-100 206-235 (279)
13 PRK10455 periplasmic protein; 92.5 1.9 4.1E-05 39.2 11.1 102 212-335 35-140 (161)
14 PRK12751 cpxP periplasmic stre 91.8 4.7 0.0001 36.9 12.8 100 235-350 56-155 (162)
15 PRK10363 cpxP periplasmic repr 91.4 4.2 9E-05 37.5 11.9 96 235-349 50-148 (166)
16 PF07813 LTXXQ: LTXXQ motif fa 86.6 4.3 9.3E-05 32.1 7.6 86 231-333 11-96 (100)
17 KOG4005 Transcription factor X 84.9 4 8.6E-05 39.9 7.7 32 69-100 67-98 (292)
18 KOG3119 Basic region leucine z 72.1 9.9 0.00022 37.1 6.3 47 69-115 192-249 (269)
19 PF13628 DUF4142: Domain of un 61.6 72 0.0016 27.3 8.9 99 87-188 30-134 (139)
20 KOG4571 Activating transcripti 60.9 44 0.00096 33.5 8.2 50 67-116 222-283 (294)
21 KOG1656 Protein involved in gl 59.0 18 0.00038 34.7 4.9 39 75-113 55-93 (221)
22 PTZ00446 vacuolar sorting prot 46.2 47 0.001 31.2 5.6 38 76-113 61-99 (191)
23 PF11459 DUF2893: Protein of u 37.8 78 0.0017 25.3 4.8 41 301-341 21-61 (69)
24 KOG4196 bZIP transcription fac 37.8 1.1E+02 0.0023 27.6 6.1 33 70-102 52-84 (135)
25 PF07889 DUF1664: Protein of u 36.8 2.9E+02 0.0063 24.4 8.7 21 213-233 21-41 (126)
26 TIGR02302 aProt_lowcomp conser 35.6 7.3E+02 0.016 28.6 13.6 44 154-197 507-550 (851)
27 KOG3725 SH3 domain protein SH3 35.3 1.9E+02 0.0041 29.1 8.0 21 171-191 236-256 (375)
28 cd00223 TOPRIM_TopoIIB_SPO TOP 31.3 55 0.0012 28.9 3.4 38 214-252 90-127 (160)
29 PF09789 DUF2353: Uncharacteri 27.0 79 0.0017 32.1 4.0 47 68-114 100-152 (319)
30 COG3130 Rmf Ribosome modulatio 26.3 16 0.00035 27.7 -0.7 15 209-223 33-47 (55)
31 PF13586 DDE_Tnp_1_2: Transpos 25.0 31 0.00068 27.4 0.6 19 204-222 44-62 (88)
32 PF11471 Sugarporin_N: Maltopo 24.7 77 0.0017 24.5 2.7 12 104-115 41-52 (60)
33 KOG3863 bZIP transcription fac 23.8 74 0.0016 34.9 3.3 43 73-115 492-534 (604)
34 PF14362 DUF4407: Domain of un 23.7 4.9E+02 0.011 25.2 8.8 16 335-350 239-254 (301)
35 PF02181 FH2: Formin Homology 23.7 7.2E+02 0.016 24.6 12.1 176 138-343 163-368 (370)
36 PTZ00464 SNF-7-like protein; P 23.6 1.3E+02 0.0029 28.5 4.7 32 80-111 60-91 (211)
37 PRK14563 ribosome modulation f 23.0 33 0.00072 26.4 0.4 16 207-223 32-47 (55)
38 PF00589 Phage_integrase: Phag 22.5 33 0.00072 28.6 0.4 18 213-230 28-45 (173)
39 PLN02796 D-glycerate 3-kinase 21.7 1.5E+02 0.0033 30.3 4.9 42 146-190 279-320 (347)
40 PF09036 Bcr-Abl_Oligo: Bcr-Ab 21.3 1.2E+02 0.0026 24.8 3.3 31 93-123 31-61 (79)
41 PF08655 DASH_Ask1: DASH compl 20.8 3.1E+02 0.0066 21.8 5.4 63 246-317 3-65 (66)
42 PF06698 DUF1192: Protein of u 20.7 1.6E+02 0.0034 22.9 3.7 37 227-263 12-49 (59)
43 PF06013 WXG100: Proteins of 1 20.2 3.6E+02 0.0078 19.8 9.4 25 137-161 45-69 (86)
44 PF10475 DUF2450: Protein of u 20.1 8.1E+02 0.018 23.8 13.5 32 316-347 119-150 (291)
No 1
>PF14144 DOG1: Seed dormancy control
Probab=100.00 E-value=1.1e-34 Score=232.68 Aligned_cols=79 Identities=54% Similarity=1.028 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhcCC-CchhHHHHHHHHHHhHHHHHHhhhhccccchhhhccCCCCchhHHHHhhhcCCCchHHHHHHhhc
Q 018357 154 RLINDLRSAVNSSM-GDNELRHLVDGVMAHYEEVFQLKSIGTKADVFHMLSGMWKTPVERCFMWLGGFRSSELLKVIGNH 232 (357)
Q Consensus 154 r~l~eLR~AL~s~~-~D~eLr~LVd~~~~HY~eyf~~Ks~aAk~DVf~llsg~W~TplER~FLWiGGfRPS~llkLL~~~ 232 (357)
|+|.|||+|+++|. +|++|+.||++||+||++||++|+.||++|||++|+|+|+||+||||+||||||||++||||+++
T Consensus 1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~ 80 (80)
T PF14144_consen 1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ 80 (80)
T ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 57999999999998 89999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.52 E-value=8.2e-08 Score=93.43 Aligned_cols=34 Identities=53% Similarity=0.609 Sum_probs=30.3
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018357 71 KALRRLAQNREAARKSRLRKKAYVQQLENSRLRL 104 (357)
Q Consensus 71 ~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l 104 (357)
|..-||.+||||||.||++||.||+||||+..-|
T Consensus 291 KRevRLmKNREAARECRRKKKEYVKCLENRVAVL 324 (348)
T KOG3584|consen 291 KREVRLMKNREAARECRRKKKEYVKCLENRVAVL 324 (348)
T ss_pred HHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHH
Confidence 5556999999999999999999999999986555
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=98.40 E-value=1.1e-06 Score=67.34 Aligned_cols=43 Identities=47% Similarity=0.574 Sum_probs=35.1
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018357 69 DQKALRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQEL 111 (357)
Q Consensus 69 ~~~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel 111 (357)
|+|..+|+.+||+||++||.|||.|++.||.....|.....+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L 45 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERL 45 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999999999999999999999998744444333333
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.38 E-value=8.2e-07 Score=67.91 Aligned_cols=42 Identities=48% Similarity=0.680 Sum_probs=34.1
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 70 QKALRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQRA 114 (357)
Q Consensus 70 ~~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~~a 114 (357)
.+..+|+.+||+|||+||.|||+|+++||.. +..|+.+....
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~---~~~L~~en~~L 45 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIEELEEK---VEELESENEEL 45 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHH
Confidence 4678899999999999999999999999997 55555554443
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.28 E-value=2.7e-06 Score=63.31 Aligned_cols=44 Identities=48% Similarity=0.634 Sum_probs=36.7
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 69 DQKALRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQRARQ 116 (357)
Q Consensus 69 ~~~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~~ar~ 116 (357)
|++..+|. +||+||++||-|||.|++.||.. +.+|+.+....++
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~---~~~L~~en~~L~~ 46 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQE---VQELEEENEQLRQ 46 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 67788999 99999999999999999999997 6666666555443
No 6
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=96.85 E-value=0.036 Score=44.82 Aligned_cols=85 Identities=24% Similarity=0.215 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHHHHHHHHHHHhHH
Q 018357 234 EPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLATLENFIHQADLL 313 (357)
Q Consensus 234 epLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~~Le~fv~qAD~L 313 (357)
-+||++|...|..+.......-..+.+.+......+...+.+..+ |. +.+.. .++.+...-.+....
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~------D~----~~i~a---~~~~~~~~~~~l~~~ 106 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPP------DE----AAIEA---LLEEIREAQAELRQE 106 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-------H----HHHHH---HHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------CH----HHHHH---HHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999988865422 11 12222 334566666677789
Q ss_pred HHHHHHHHHHhcCHHHHH
Q 018357 314 RQQTLQQMHRILTARQAA 331 (357)
Q Consensus 314 R~qTL~~m~~ILTprQAA 331 (357)
|.+++.++..+|||.|=+
T Consensus 107 ~~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 107 RLEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp HHHHHHHHHHTT-GGGHH
T ss_pred HHHHHHHHHHcCCHHHhC
Confidence 999999999999999865
No 7
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.018 Score=52.28 Aligned_cols=109 Identities=23% Similarity=0.280 Sum_probs=72.6
Q ss_pred hhHHHHhhhcCCCchH---HHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCc
Q 018357 209 PVERCFMWLGGFRSSE---LLKVIGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSASSLGPTSSGN 285 (357)
Q Consensus 209 plER~FLWiGGfRPS~---llkLL~~~LepLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqslad~la~~~~g~~~~g~ 285 (357)
|+... +|.|+|-|=- .++.| +||+.|...|..+...-+ .++.+-+..-...+-+.+.++.+.
T Consensus 34 ~~~~~-~~~g~~~~~~~~~~~~~l-----~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D------ 98 (160)
T COG3678 34 PMADA-HHGGQFGPRHQGGMFKGL-----DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFD------ 98 (160)
T ss_pred Ccccc-ccCCCCCccccccccccc-----cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcC------
Confidence 44444 5888776653 23332 799999999988877666 344444444445555555543221
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 018357 286 VADYMGQMALAMGKLATLENFIHQADLLRQQTLQQMHRILTARQAARALLVIND 339 (357)
Q Consensus 286 va~~~~qm~~Am~kl~~Le~fv~qAD~LR~qTL~~m~~ILTprQAArfLlAl~e 339 (357)
- +.|-...+.++....+.+.+|.++-.+|..||||.|.+.|=--.++
T Consensus 99 ~-------aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~~ 145 (160)
T COG3678 99 E-------AKARAQAEKMENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLAQ 145 (160)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 1223456778888999999999999999999999999776544433
No 8
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=96.60 E-value=0.0038 Score=65.74 Aligned_cols=45 Identities=40% Similarity=0.552 Sum_probs=37.3
Q ss_pred ccHHHHH---HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 68 GDQKALR---RLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQRAR 115 (357)
Q Consensus 68 ~~~~~~~---rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~~ar 115 (357)
.|+|+++ |..+|||-|..||.|||.|++.||.. |..|++|-+..|
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~r---Lq~ll~Ene~Lk 322 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEAR---LQALLSENEQLK 322 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4777754 88999999999999999999999987 777777665443
No 9
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=96.22 E-value=0.0047 Score=64.03 Aligned_cols=44 Identities=36% Similarity=0.518 Sum_probs=35.2
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 70 QKALRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQR 113 (357)
Q Consensus 70 ~~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~~ 113 (357)
=|..||..+|.+-|-.||.|||.||.+||.....-..=.|||++
T Consensus 250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~k 293 (472)
T KOG0709|consen 250 LKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQK 293 (472)
T ss_pred HHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHH
Confidence 35679999999999999999999999999985544444445444
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=95.86 E-value=0.013 Score=48.14 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=29.1
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 018357 70 QKALRRLAQNREAARKSRLRKKAYVQQLENSR 101 (357)
Q Consensus 70 ~~~~~rl~~nreaar~sr~rkk~y~~~le~sr 101 (357)
-|-.||..+||.||.+||.||+.++..||...
T Consensus 29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~ 60 (92)
T PF03131_consen 29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEI 60 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999873
No 11
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=95.13 E-value=1.1 Score=41.11 Aligned_cols=96 Identities=18% Similarity=0.130 Sum_probs=59.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHHH
Q 018357 231 NHLEPLTDQQLMGICNLQQSSQQAEDA--------LSQGMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLAT 302 (357)
Q Consensus 231 ~~LepLTeqQl~~I~~Lqqst~qaEda--------Lsqgma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~~ 302 (357)
..| +||++|...|..++...+.+=.+ ....|....+.+.+.+.++++. .+ .+..+.++
T Consensus 49 ~~L-~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FD------ea----avral~~~--- 114 (170)
T PRK12750 49 RQL-DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFD------EA----AANDLAKQ--- 114 (170)
T ss_pred hhC-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCC------HH----HHHHHHHH---
Confidence 345 79999999999988776664333 4556666777777777655332 11 11111111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 018357 303 LENFIHQADLLRQQTLQQMHRILTARQAARALLVINDY 340 (357)
Q Consensus 303 Le~fv~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey 340 (357)
+..--.+.---|.++.+++..||||-|=+.|---..+.
T Consensus 115 ~~~~~~e~~v~~~~~~~~~~~vLTpEQRak~~e~~~~r 152 (170)
T PRK12750 115 MVEKQVERRVKMLEKRHQMLSILTPEQKAKFQELQQER 152 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 11111122223677899999999999999998765544
No 12
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=93.36 E-value=0.17 Score=49.39 Aligned_cols=30 Identities=43% Similarity=0.509 Sum_probs=24.2
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 018357 71 KALRRLAQNREAARKSRLRKKAYVQQLENS 100 (357)
Q Consensus 71 ~~~~rl~~nreaar~sr~rkk~y~~~le~s 100 (357)
|..|.-++|||||+|||.||---+.+||.-
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEdk 235 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLEDK 235 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 345666789999999999998877777764
No 13
>PRK10455 periplasmic protein; Reviewed
Probab=92.52 E-value=1.9 Score=39.19 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=57.6
Q ss_pred HHHhhhcC---CCchHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccCCCCCCCchh
Q 018357 212 RCFMWLGG---FRSSELLKVIGNHLEPLTDQQLMGICNLQQSSQQAEDALS-QGMEALQQSLVDTLSASSLGPTSSGNVA 287 (357)
Q Consensus 212 R~FLWiGG---fRPS~llkLL~~~LepLTeqQl~~I~~Lqqst~qaEdaLs-qgma~LQqslad~la~~~~g~~~~g~va 287 (357)
.+.+|-|| ..+..+|+ .| +||++|...|..+.+..+..-...+ +..+.++ +.+.++.+ +-+
T Consensus 35 ~~~~~~~~~~g~~~~~m~~----~L-~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~ad~F------Dea 99 (161)
T PRK10455 35 KPMMHHKGKFGPHHDMMFK----GL-NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIASDTF------DKA 99 (161)
T ss_pred CccccCCCCCCchhhhhhh----hC-CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHccCcc------CHH
Confidence 33566553 44444443 34 7999999999998777665533332 2333333 23433322 111
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHH
Q 018357 288 DYMGQMALAMGKLATLENFIHQADLLRQQTLQQMHRILTARQAARALL 335 (357)
Q Consensus 288 ~~~~qm~~Am~kl~~Le~fv~qAD~LR~qTL~~m~~ILTprQAArfLl 335 (357)
.+...++++. ..-.+.--.|.++-.+|..||||-|=+.|=-
T Consensus 100 ----avra~~~k~~---~~~~~~~~~~~~~~~qiy~vLTPEQr~q~~~ 140 (161)
T PRK10455 100 ----KAEAQITKME---AQRKARMLAHMETQNKIYNVLTPEQKKQFNA 140 (161)
T ss_pred ----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1222233332 2233333368889999999999999998753
No 14
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=91.81 E-value=4.7 Score=36.86 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHHHHHHHHHHHhHHH
Q 018357 235 PLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLATLENFIHQADLLR 314 (357)
Q Consensus 235 pLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~~Le~fv~qAD~LR 314 (357)
+||++|...|-.+....+....... .+ .-+.+-+.+.++++. .+ .+...+++. ...-..---.+
T Consensus 56 ~LTd~QR~qmr~im~~~r~~~~~~~--~~-~~~~m~~Li~Ad~FD------ea----Avra~~~km---a~~~~e~~v~~ 119 (162)
T PRK12751 56 NLTEQQRQQMRDLMRQSHQSQPRLD--LE-DREAMHKLITADKFD------EA----AVRAQAEKM---SQNQIERHVEM 119 (162)
T ss_pred CCCHHHHHHHHHHHHHhhhcccchh--HH-HHHHHHHHHhcCCCC------HH----HHHHHHHHH---HHHHHHHHHHH
Confidence 7999999999998877776532111 11 223344455554332 11 122223332 22222222357
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccc
Q 018357 315 QQTLQQMHRILTARQAARALLVINDYTSRLRALSSL 350 (357)
Q Consensus 315 ~qTL~~m~~ILTprQAArfLlAl~ey~~rLRalssl 350 (357)
.++.++|+.+|||-|-+.|=--.-+....+|.++.+
T Consensus 120 ~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~~~~~ 155 (162)
T PRK12751 120 AKVRNQMYNLLTPEQKEALNKKHQERIEKLQQKPAA 155 (162)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 788899999999999999998888888888887643
No 15
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=91.36 E-value=4.2 Score=37.51 Aligned_cols=96 Identities=20% Similarity=0.255 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHH--HHHHHHHHHh
Q 018357 235 PLTDQQLMGICNLQQSSQQAEDALS-QGMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLA--TLENFIHQAD 311 (357)
Q Consensus 235 pLTeqQl~~I~~Lqqst~qaEdaLs-qgma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~--~Le~fv~qAD 311 (357)
+||++|...|..|.+.-+.+...++ .+++.++ +.+.++.+ |-+ .+....+|+. ..+.-|
T Consensus 50 dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad~F------DEa----avra~a~kma~~~~e~~V---- 111 (166)
T PRK10363 50 SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAENF------DEN----AVRAQAEKMAQEQVARQV---- 111 (166)
T ss_pred CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcCCC------CHH----HHHHHHHHHHHHHHHHHH----
Confidence 7999999999999988876654443 2444444 33333322 211 1222233332 122222
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcc
Q 018357 312 LLRQQTLQQMHRILTARQAARALLVINDYTSRLRALSS 349 (357)
Q Consensus 312 ~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rLRalss 349 (357)
-|.++-++|..||||-|-+.|=--.-+....+|.++.
T Consensus 112 -em~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~~~~ 148 (166)
T PRK10363 112 -EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQ 148 (166)
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667888999999999999996666666666677654
No 16
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=86.57 E-value=4.3 Score=32.13 Aligned_cols=86 Identities=22% Similarity=0.193 Sum_probs=44.4
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHHHHHHHHHHH
Q 018357 231 NHLEPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLATLENFIHQA 310 (357)
Q Consensus 231 ~~LepLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~~Le~fv~qA 310 (357)
..| +||++|...|..+....+..-..+....+.+.. +-+ . +.+.+. . .++.+.+.+...-.+.
T Consensus 11 ~~L-~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~----~------~~~~~~-~----~~~~~~~~~~~~~~~~ 73 (100)
T PF07813_consen 11 EEL-NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRA-LRD----P------SFDEAA-P----EALAAMAEMMELRAEM 73 (100)
T ss_dssp TTS---THHHHHHHHHHHHHHCTTS------HHHHHH-HHH----S------S--HHH-H----HHHH--HHCHHHHHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHH-hcc----c------cCChhH-H----HHHHHHHHHHHHHHHH
Confidence 344 699999999999888877666666111111111 111 0 011110 0 1112223444445555
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHH
Q 018357 311 DLLRQQTLQQMHRILTARQAARA 333 (357)
Q Consensus 311 D~LR~qTL~~m~~ILTprQAArf 333 (357)
-..|..+...+..||||-|=+.|
T Consensus 74 ~~~~~~~~~~~~~vLt~eQk~~~ 96 (100)
T PF07813_consen 74 MEERAKAQHALYAVLTPEQKEKF 96 (100)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Confidence 56678889999999999998776
No 17
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=84.95 E-value=4 Score=39.90 Aligned_cols=32 Identities=41% Similarity=0.526 Sum_probs=29.1
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 018357 69 DQKALRRLAQNREAARKSRLRKKAYVQQLENS 100 (357)
Q Consensus 69 ~~~~~~rl~~nreaar~sr~rkk~y~~~le~s 100 (357)
..|++||--+||-||..+|=||||-...+|--
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~ 98 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYE 98 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 67999999999999999999999988888765
No 18
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=72.08 E-value=9.9 Score=37.10 Aligned_cols=47 Identities=36% Similarity=0.418 Sum_probs=31.9
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 018357 69 DQKALRRLAQNREAARKSRLRKKAYV-----------QQLENSRLRLAQLEQELQRAR 115 (357)
Q Consensus 69 ~~~~~~rl~~nreaar~sr~rkk~y~-----------~~le~sr~~l~qleqel~~ar 115 (357)
|++-..|..+|=+|+||||...|.=. ...|.-|.++.||++||...|
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999998765322 122344555666666666666
No 19
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=61.62 E-value=72 Score=27.32 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccc-cCCCCCCCCC---CCCchhhhHHHHHHHHHHHHhhH-HHHHH
Q 018357 87 RLRKKAYVQQLENSRLRLAQLEQELQ-RARQQGIFIA-TGVSGDIGHS---VAGNGVLAFDLDYVHWVDEHQRL-INDLR 160 (357)
Q Consensus 87 r~rkk~y~~~le~sr~~l~qleqel~-~ar~qg~~~~-~~~~~~~~~~---~~~~g~~~F~~~Y~~Wleeq~r~-l~eLR 160 (357)
.-.=|+|-+.+.+. -.++.++|. -|.+.|+-+. +..+..+... ........||..|-..+..-++. +..+.
T Consensus 30 ~~~Vk~~A~~~~~d---h~~~~~~l~~la~~~~v~lp~~~~~~~~~~~l~~L~~~~g~~FD~~yl~~~i~~h~~~l~~~~ 106 (139)
T PF13628_consen 30 SPEVKAFAQQMVED---HTQANQQLAALAAKKGVTLPPTALSAEQQAELDRLQKLSGSAFDRAYLDAQIKAHEKALALFE 106 (139)
T ss_pred CHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCcccccccHhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456999999888 666777775 4567888876 3221111100 11112479999998887766655 55555
Q ss_pred HHhhcCCCchhHHHHHHHHHHhHHHHHH
Q 018357 161 SAVNSSMGDNELRHLVDGVMAHYEEVFQ 188 (357)
Q Consensus 161 ~AL~s~~~D~eLr~LVd~~~~HY~eyf~ 188 (357)
..+-....|.+|+.++...+.-...+..
T Consensus 107 ~~~~~~~~~~~lk~~a~~~lp~l~~hl~ 134 (139)
T PF13628_consen 107 KQLAASGKDPELKAFAQETLPVLEAHLE 134 (139)
T ss_pred HHhhccCCCHHHHHHHHHHhHHHHHHHH
Confidence 5355556788999998887765555543
No 20
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=60.88 E-value=44 Score=33.49 Aligned_cols=50 Identities=30% Similarity=0.388 Sum_probs=35.8
Q ss_pred cccHHHHHHHHhhHH-HHHHhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 018357 67 TGDQKALRRLAQNRE-AARKSRLRKKAYVQQLENS-----------RLRLAQLEQELQRARQ 116 (357)
Q Consensus 67 ~~~~~~~~rl~~nre-aar~sr~rkk~y~~~le~s-----------r~~l~qleqel~~ar~ 116 (357)
..+.|++||-+++|. ||-.=|-||||=-+.|+.. |.++..||-|++.-||
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777776655 4888899999988877643 4456678888887775
No 21
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.04 E-value=18 Score=34.70 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 75 RLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQR 113 (357)
Q Consensus 75 rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~~ 113 (357)
-.++|.-+|-.|=.|||.|-|||+-----|+.||+.+..
T Consensus 55 ~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~a 93 (221)
T KOG1656|consen 55 YGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREA 93 (221)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345788888889999999999988766667777776543
No 22
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=46.17 E-value=47 Score=31.23 Aligned_cols=38 Identities=32% Similarity=0.328 Sum_probs=31.1
Q ss_pred HHhhH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 76 LAQNR-EAARKSRLRKKAYVQQLENSRLRLAQLEQELQR 113 (357)
Q Consensus 76 l~~nr-eaar~sr~rkk~y~~~le~sr~~l~qleqel~~ 113 (357)
+.+|+ .+|..+=.|||.|.++|+..--.+..|||-+-.
T Consensus 61 ~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~ 99 (191)
T PTZ00446 61 VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN 99 (191)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 588899999999999999998888888887543
No 23
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=37.85 E-value=78 Score=25.31 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 018357 301 ATLENFIHQADLLRQQTLQQMHRILTARQAARALLVINDYT 341 (357)
Q Consensus 301 ~~Le~fv~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~ 341 (357)
+....++...-+||-+.|+++..--|-.++.|-++.+|+.+
T Consensus 21 e~a~~l~egL~nLrp~~lq~LL~~C~svKvkRLfl~lA~~~ 61 (69)
T PF11459_consen 21 EEADELMEGLRNLRPRVLQELLEHCTSVKVKRLFLYLAERA 61 (69)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHCccHHHHHHHHHHHHHc
Confidence 45667777788899999999999999999999999999874
No 24
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=37.76 E-value=1.1e+02 Score=27.58 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=23.8
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 018357 70 QKALRRLAQNREAARKSRLRKKAYVQQLENSRL 102 (357)
Q Consensus 70 ~~~~~rl~~nreaar~sr~rkk~y~~~le~sr~ 102 (357)
-|-.||--.||-=|-.||-++-.--..||+-+.
T Consensus 52 lKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~ 84 (135)
T KOG4196|consen 52 LKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKA 84 (135)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 366788899999999999876444445555543
No 25
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.81 E-value=2.9e+02 Score=24.40 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=14.9
Q ss_pred HHhhhcCCCchHHHHHHhhcC
Q 018357 213 CFMWLGGFRSSELLKVIGNHL 233 (357)
Q Consensus 213 ~FLWiGGfRPS~llkLL~~~L 233 (357)
+++|.=||.=|++.=+-...|
T Consensus 21 ~Y~wwKGws~sD~M~vTrr~m 41 (126)
T PF07889_consen 21 GYMWWKGWSFSDLMFVTRRSM 41 (126)
T ss_pred eeeeecCCchhHHHHHHHHhH
Confidence 589999999888765433333
No 26
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=35.60 E-value=7.3e+02 Score=28.61 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=35.9
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHHHHHHhHHHHHHhhhhccccc
Q 018357 154 RLINDLRSAVNSSMGDNELRHLVDGVMAHYEEVFQLKSIGTKAD 197 (357)
Q Consensus 154 r~l~eLR~AL~s~~~D~eLr~LVd~~~~HY~eyf~~Ks~aAk~D 197 (357)
.--..|+.||...++|.|+..|.+....--++|.+....-+..+
T Consensus 507 ~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~ 550 (851)
T TIGR02302 507 AAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNN 550 (851)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 33467788888889999999999999999999999877655544
No 27
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=35.26 E-value=1.9e+02 Score=29.08 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhHHHHHHhhh
Q 018357 171 ELRHLVDGVMAHYEEVFQLKS 191 (357)
Q Consensus 171 eLr~LVd~~~~HY~eyf~~Ks 191 (357)
=|+..|+.-|.-|.+-|+.-.
T Consensus 236 CL~dFVeaQmtyYAQcyq~Ml 256 (375)
T KOG3725|consen 236 CLRDFVEAQMTYYAQCYQLML 256 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 377889999999998888644
No 28
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=31.31 E-value=55 Score=28.94 Aligned_cols=38 Identities=26% Similarity=0.566 Sum_probs=30.3
Q ss_pred HhhhcCCCchHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 018357 214 FMWLGGFRSSELLKVIGNHLEPLTDQQLMGICNLQQSSQ 252 (357)
Q Consensus 214 FLWiGGfRPS~llkLL~~~LepLTeqQl~~I~~Lqqst~ 252 (357)
+.|+ |.+||++.++-.....|||+..+..+.+|..+..
T Consensus 90 l~~~-G~~~~d~~~~~~~~~~~Ls~~d~~~l~~ll~~~~ 127 (160)
T cd00223 90 LRWL-GLRPSDIIRLPDLPLLPLSERDLKRAKSLLRRPR 127 (160)
T ss_pred cEEc-cCCHHHHhhccccccCCCCHHHHHHHHHHHhccc
Confidence 6676 5889999874445678999999999999888654
No 29
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.00 E-value=79 Score=32.07 Aligned_cols=47 Identities=43% Similarity=0.558 Sum_probs=34.1
Q ss_pred ccHHHHHH-HHhhHHH-----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 68 GDQKALRR-LAQNREA-----ARKSRLRKKAYVQQLENSRLRLAQLEQELQRA 114 (357)
Q Consensus 68 ~~~~~~~r-l~~nrea-----ar~sr~rkk~y~~~le~sr~~l~qleqel~~a 114 (357)
.|-|.+|- +++.|-. +|..--.|..||.|||..+-+..|||-+++..
T Consensus 100 GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 100 GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677774 6654432 33322467799999999999999999998864
No 30
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=26.33 E-value=16 Score=27.72 Aligned_cols=15 Identities=33% Similarity=0.873 Sum_probs=8.7
Q ss_pred hhHHHHhhhcCCCch
Q 018357 209 PVERCFMWLGGFRSS 223 (357)
Q Consensus 209 plER~FLWiGGfRPS 223 (357)
.++---.|+||||--
T Consensus 33 ~~~~Rs~WLgGWRea 47 (55)
T COG3130 33 TLNQRSQWLGGWREA 47 (55)
T ss_pred CchHHHHHHHHHHHH
Confidence 334445677777743
No 31
>PF13586 DDE_Tnp_1_2: Transposase DDE domain
Probab=24.97 E-value=31 Score=27.39 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=15.1
Q ss_pred CCCCchhHHHHhhhcCCCc
Q 018357 204 GMWKTPVERCFMWLGGFRS 222 (357)
Q Consensus 204 g~W~TplER~FLWiGGfRP 222 (357)
...+.-.||+|-||.+||-
T Consensus 44 ~~~Rw~VEr~f~wlk~~Rr 62 (88)
T PF13586_consen 44 YKRRWVVERTFAWLKRFRR 62 (88)
T ss_pred hccceehhhhhHHHHHcCc
Confidence 3445569999999999974
No 32
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.67 E-value=77 Score=24.50 Aligned_cols=12 Identities=42% Similarity=0.357 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 018357 104 LAQLEQELQRAR 115 (357)
Q Consensus 104 l~qleqel~~ar 115 (357)
|.+.||+++.|.
T Consensus 41 L~~ae~ra~~ae 52 (60)
T PF11471_consen 41 LQAAEQRAQAAE 52 (60)
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 33
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=23.79 E-value=74 Score=34.90 Aligned_cols=43 Identities=33% Similarity=0.469 Sum_probs=31.1
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 73 LRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQRAR 115 (357)
Q Consensus 73 ~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~~ar 115 (357)
.||--.||=||-.||.||---|++||.---+|.-=...|-+.|
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er 534 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER 534 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677799999999999999999999887555543333333333
No 34
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.73 E-value=4.9e+02 Score=25.18 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhccc
Q 018357 335 LVINDYTSRLRALSSL 350 (357)
Q Consensus 335 lAl~ey~~rLRalssl 350 (357)
-+..++..|+.+|..|
T Consensus 239 ~~~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 239 SANDGFLARLEALWEL 254 (301)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 4455566666666544
No 35
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=23.72 E-value=7.2e+02 Score=24.58 Aligned_cols=176 Identities=16% Similarity=0.230 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhHHHHHHHHHHhHHHHHHhhhhccccchhhhccCCCCchhHHHHhhh
Q 018357 138 VLAFDLDYVHWVDEHQRLINDLRSAVNSSMGDNELRHLVDGVMAHYEEVFQLKSIGTKADVFHMLSGMWKTPVERCFMWL 217 (357)
Q Consensus 138 ~~~F~~~Y~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~~~HY~eyf~~Ks~aAk~DVf~llsg~W~TplER~FLWi 217 (357)
+..|...|..=+++....+..|..|.+.-.....|+.+..-++ .|.+|...-..-..+
T Consensus 163 ~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL-~~GN~lN~g~~~g~A--------------------- 220 (370)
T PF02181_consen 163 ALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIIL-AIGNFLNGGTPRGNA--------------------- 220 (370)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHSTCSTTCS----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH-HHHHHhccCCCcccc---------------------
Confidence 5666777777777777777777777655333456777777666 455554432221222
Q ss_pred cCCCchHH---------------HHHHh--------------hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 218 GGFRSSEL---------------LKVIG--------------NHLEPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQS 268 (357)
Q Consensus 218 GGfRPS~l---------------lkLL~--------------~~LepLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqs 268 (357)
.||+-+.| ++.|. ..|.++.......+..+... =..|..++..++..
T Consensus 221 ~GF~L~sL~kL~~~Ks~d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~----i~~l~~~~~~~~~~ 296 (370)
T PF02181_consen 221 KGFKLSSLSKLKDTKSNDNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQD----IKELEKGLEKIKKE 296 (370)
T ss_dssp SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHH----HHHHHHHHHHHHHH
T ss_pred ceecHHhHHHHHhcccccCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHH----HHHHHHHHHHHHHH
Confidence 34444333 33222 12222222222233333333 33355566666655
Q ss_pred HhhhhhhccCCCCCCCchhh-hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 018357 269 LVDTLSASSLGPTSSGNVAD-YMGQMALAMGKLATLENFIHQADLLRQQTLQQMHRILTARQAARALLVINDYTSR 343 (357)
Q Consensus 269 lad~la~~~~g~~~~g~va~-~~~qm~~Am~kl~~Le~fv~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~~r 343 (357)
+...... .+ ..+.... +..-+..+..++..|...+.+++..-.+++.-.-.-=+....-+||--+.+|...
T Consensus 297 l~~~~~~--~~--~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~ 368 (370)
T PF02181_consen 297 LEAIEKD--EE--DDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDM 368 (370)
T ss_dssp HHHCCTT--SS--TT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHH
T ss_pred HHhcccc--cc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 5443320 00 1111111 2223356778899999999999998888888775544556677888877777543
No 36
>PTZ00464 SNF-7-like protein; Provisional
Probab=23.57 E-value=1.3e+02 Score=28.55 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=23.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018357 80 REAARKSRLRKKAYVQQLENSRLRLAQLEQEL 111 (357)
Q Consensus 80 reaar~sr~rkk~y~~~le~sr~~l~qleqel 111 (357)
+..|..+=.|||.|-++|+.-.-.+.+|||-+
T Consensus 60 K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~ 91 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQ 91 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666789999998887766677776653
No 37
>PRK14563 ribosome modulation factor; Provisional
Probab=23.01 E-value=33 Score=26.37 Aligned_cols=16 Identities=44% Similarity=0.908 Sum_probs=10.2
Q ss_pred CchhHHHHhhhcCCCch
Q 018357 207 KTPVERCFMWLGGFRSS 223 (357)
Q Consensus 207 ~TplER~FLWiGGfRPS 223 (357)
.++.-|. .||||||--
T Consensus 32 ~~~~~r~-~Wl~GWReg 47 (55)
T PRK14563 32 QTLDARS-QWLGGWREA 47 (55)
T ss_pred CCcHHHH-HHHHHHHHH
Confidence 3444455 899998843
No 38
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The catalytic site residues in CRE recombinase (P06956 from SWISSPROT) are Arg-173, His-289, Arg-292 and Tyr-324.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration; PDB: 1A0P_A 1Z1G_B 1Z19_A 1AE9_A 1Z1B_A 1P7D_B 2A3V_C 1Q3V_E 1Q3U_A 1OUQ_F ....
Probab=22.47 E-value=33 Score=28.62 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=12.3
Q ss_pred HHhhhcCCCchHHHHHHh
Q 018357 213 CFMWLGGFRSSELLKVIG 230 (357)
Q Consensus 213 ~FLWiGGfRPS~llkLL~ 230 (357)
.+++.+|+||+|++.|=.
T Consensus 28 ~l~~~tG~R~~El~~l~~ 45 (173)
T PF00589_consen 28 LLLLYTGLRPSELLRLRW 45 (173)
T ss_dssp HHHHHHT--HHHHHT-BG
T ss_pred HHHHHHccchhhhhhhhh
Confidence 378899999999998743
No 39
>PLN02796 D-glycerate 3-kinase
Probab=21.70 E-value=1.5e+02 Score=30.33 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=31.4
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCCchhHHHHHHHHHHhHHHHHHhh
Q 018357 146 VHWVDEHQRLINDLRSAVNSSMGDNELRHLVDGVMAHYEEVFQLK 190 (357)
Q Consensus 146 ~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~~~HY~eyf~~K 190 (357)
-+|..+|++.| |+.-...++|+++...|+.+|=-|..|+..-
T Consensus 279 ~~WR~qQE~~l---~~~~~~gMsde~v~~FV~~~mP~y~~y~~~l 320 (347)
T PLN02796 279 YEWRLQAEIAM---RAKGKPGMSDEEVADFVSRYMPAYKAYLPGL 320 (347)
T ss_pred HHHHHHHHHHH---HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777644 3333456889999999999999999888753
No 40
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=21.29 E-value=1.2e+02 Score=24.84 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018357 93 YVQQLENSRLRLAQLEQELQRARQQGIFIAT 123 (357)
Q Consensus 93 y~~~le~sr~~l~qleqel~~ar~qg~~~~~ 123 (357)
--|.||.++..+..||||+.+-|=.=+|+-|
T Consensus 31 ~e~eLerCK~sirrLeqevnkERFrmiYLQT 61 (79)
T PF09036_consen 31 IEQELERCKASIRRLEQEVNKERFRMIYLQT 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477999999999999999888766666644
No 41
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.80 E-value=3.1e+02 Score=21.80 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018357 246 NLQQSSQQAEDALSQGMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLATLENFIHQADLLRQQT 317 (357)
Q Consensus 246 ~Lqqst~qaEdaLsqgma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~~Le~fv~qAD~LR~qT 317 (357)
+|.|.+--.=..|+.-+.+.+..+.+.+. +.|..|....+.+.+..+=+..|+.+|-++++.+
T Consensus 3 ~ldQ~iTl~LQeID~N~s~~~~iit~~Il---------P~v~rY~~~s~~i~~~~~fwk~fFe~sAnV~L~~ 65 (66)
T PF08655_consen 3 QLDQEITLLLQEIDSNFSRCHRIITDKIL---------PAVERYGESSEKIWDSAKFWKQFFEQSANVRLST 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccC
Confidence 33444333333466666666666665542 1366777777777777788999999998887653
No 42
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.74 E-value=1.6e+02 Score=22.88 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=29.4
Q ss_pred HHHhhcCCCChHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 018357 227 KVIGNHLEPLTDQQLM-GICNLQQSSQQAEDALSQGME 263 (357)
Q Consensus 227 kLL~~~LepLTeqQl~-~I~~Lqqst~qaEdaLsqgma 263 (357)
+++...|++||-..|. .|.-|+.+|...|.++...-+
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678999988886 899999999999888876543
No 43
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=20.18 E-value=3.6e+02 Score=19.78 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHH
Q 018357 137 GVLAFDLDYVHWVDEHQRLINDLRS 161 (357)
Q Consensus 137 g~~~F~~~Y~~Wleeq~r~l~eLR~ 161 (357)
++..|...|..|-....+....|..
T Consensus 45 a~~af~~~~~~~~~~~~~~~~~L~~ 69 (86)
T PF06013_consen 45 AADAFQDKFEEWNQAFRQLNEALEE 69 (86)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999888777666643
No 44
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.10 E-value=8.1e+02 Score=23.79 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhh
Q 018357 316 QTLQQMHRILTARQAARALLVINDYTSRLRAL 347 (357)
Q Consensus 316 qTL~~m~~ILTprQAArfLlAl~ey~~rLRal 347 (357)
++|..|..+.......+-|+.-++|...|.-+
T Consensus 119 ~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li 150 (291)
T PF10475_consen 119 EKLEQIKTVQQTQSRLQELLEEGDYPGALDLI 150 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 44555566666666677778888887666543
Done!