Query 018357
Match_columns 357
No_of_seqs 186 out of 247
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 98.8 6.2E-09 2.1E-13 77.4 6.1 44 71-117 1-44 (55)
2 2dgc_A Protein (GCN4); basic d 98.3 9.1E-07 3.1E-11 67.3 6.1 47 69-115 7-57 (63)
3 2wt7_A Proto-oncogene protein 98.1 9.1E-06 3.1E-10 61.5 6.8 36 71-106 2-37 (63)
4 1t2k_D Cyclic-AMP-dependent tr 98.0 8E-06 2.7E-10 61.2 6.0 34 72-105 2-35 (61)
5 1jnm_A Proto-oncogene C-JUN; B 98.0 8.6E-06 2.9E-10 61.3 6.0 36 71-106 1-36 (62)
6 1gd2_E Transcription factor PA 97.4 0.00016 5.5E-09 56.2 5.1 38 72-112 9-46 (70)
7 2y39_A Nickel and cobalt resis 97.3 0.0057 1.9E-07 51.9 13.4 101 223-340 9-112 (118)
8 1ci6_A Transcription factor AT 96.6 0.0023 7.8E-08 48.4 4.7 35 71-105 2-36 (63)
9 3a5t_A Transcription factor MA 95.3 0.0053 1.8E-07 51.3 1.7 40 71-113 37-76 (107)
10 3itf_A Periplasmic adaptor pro 94.7 0.21 7.1E-06 43.5 10.0 100 232-349 43-143 (145)
11 1gu4_A CAAT/enhancer binding p 94.5 0.12 4.1E-06 40.8 7.3 47 69-115 13-70 (78)
12 1hjb_A Ccaat/enhancer binding 93.7 0.2 6.9E-06 40.2 7.3 48 69-116 13-71 (87)
13 2wt7_B Transcription factor MA 89.9 0.86 2.9E-05 36.9 6.8 34 69-102 25-58 (90)
14 1skn_P DNA-binding domain of S 87.6 0.26 8.7E-06 40.0 2.2 29 70-98 61-89 (92)
15 3oeo_A Spheroplast protein Y; 86.8 0.28 9.5E-06 42.0 2.2 99 230-345 29-127 (138)
16 3o39_A Periplasmic protein rel 85.1 1.3 4.3E-05 36.7 5.3 84 235-334 17-100 (108)
17 3lay_A Zinc resistance-associa 82.3 17 0.00058 32.3 11.8 43 234-276 66-108 (175)
18 2kz5_A Transcription factor NF 73.5 0.66 2.3E-05 37.6 -0.1 21 71-91 66-86 (91)
19 4abm_A Charged multivesicular 71.7 6.3 0.00022 30.8 5.2 36 77-112 41-76 (79)
20 3he4_B Synzip5; heterodimeric 69.5 6.7 0.00023 27.3 4.2 27 90-116 8-34 (46)
21 2ksd_A Aerobic respiration con 57.2 0.42 1.4E-05 40.3 -4.4 30 93-122 76-105 (115)
22 2c9l_Y EB1, zebra, BZLF1 trans 54.2 39 0.0013 25.0 6.3 39 74-115 4-42 (63)
23 2ke4_A CDC42-interacting prote 50.1 99 0.0034 24.9 9.4 43 232-275 7-54 (98)
24 1zme_C Proline utilization tra 42.8 21 0.00072 25.7 3.4 24 90-116 42-65 (70)
25 3plt_A Sphingolipid long chain 41.0 40 0.0014 31.4 5.7 43 77-119 99-148 (234)
26 2er8_A Regulatory protein Leu3 40.8 14 0.00046 27.0 2.1 23 90-115 47-69 (72)
27 1k1f_A Breakpoint cluster regi 34.3 33 0.0011 26.4 3.3 30 94-123 32-61 (72)
28 3obv_E Protein diaphanous homo 29.4 4.3E+02 0.015 26.2 13.3 174 138-344 170-376 (457)
29 3e1r_A Centrosomal protein of 28.5 36 0.0012 25.3 2.5 25 89-116 31-55 (58)
30 4i0x_B ESAT-6-like protein MAB 28.3 2E+02 0.007 22.1 7.7 50 92-157 25-74 (103)
31 1hwt_C Protein (heme activator 26.4 30 0.001 25.5 1.9 26 86-114 52-77 (81)
32 3a2a_A Voltage-gated hydrogen 23.8 67 0.0023 23.8 3.2 21 92-115 25-45 (58)
33 2oqq_A Transcription factor HY 23.5 62 0.0021 22.7 2.8 14 91-104 2-15 (42)
34 1hlo_A Protein (transcription 23.5 59 0.002 24.7 3.1 24 92-118 57-80 (80)
35 1v9d_A Diaphanous protein homo 23.3 4.7E+02 0.016 24.6 11.8 43 138-180 99-141 (340)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.81 E-value=6.2e-09 Score=77.36 Aligned_cols=44 Identities=48% Similarity=0.597 Sum_probs=38.9
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018357 71 KALRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQRARQQ 117 (357)
Q Consensus 71 ~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~~ar~q 117 (357)
|..+|+..|||+|+.||.|||+||+.||.. +.+|+.|-...+.|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~---v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENR---VAVLENQNKTLIEE 44 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 357899999999999999999999999997 78888888777654
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.31 E-value=9.1e-07 Score=67.35 Aligned_cols=47 Identities=40% Similarity=0.477 Sum_probs=32.4
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 018357 69 DQKALRRLAQNREAARKSRLRKKAYVQQLENSRLRL----AQLEQELQRAR 115 (357)
Q Consensus 69 ~~~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l----~qleqel~~ar 115 (357)
+++..++-++||||||+||.||++|+..||.....| ..|+.|+...+
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778899999999999999999999874443 33444444444
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.06 E-value=9.1e-06 Score=61.52 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=31.5
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 018357 71 KALRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQ 106 (357)
Q Consensus 71 ~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~q 106 (357)
|-.+|+-.||+||++||.|||.|++.||...-.|..
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~ 37 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLED 37 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999998555544
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.03 E-value=8e-06 Score=61.25 Aligned_cols=34 Identities=38% Similarity=0.514 Sum_probs=29.6
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 018357 72 ALRRLAQNREAARKSRLRKKAYVQQLENSRLRLA 105 (357)
Q Consensus 72 ~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~ 105 (357)
-.+|+..||+||.+||.|||.|+++||...-.|.
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~ 35 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLS 35 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998754443
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.02 E-value=8.6e-06 Score=61.33 Aligned_cols=36 Identities=42% Similarity=0.402 Sum_probs=30.7
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 018357 71 KALRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQ 106 (357)
Q Consensus 71 ~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~q 106 (357)
|..||..+||+||++||.|||.|++.||...-.|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~ 36 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKA 36 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999997555543
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.43 E-value=0.00016 Score=56.20 Aligned_cols=38 Identities=34% Similarity=0.409 Sum_probs=31.9
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 72 ALRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQ 112 (357)
Q Consensus 72 ~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~ 112 (357)
..+|-+|||+|+|-.|-||++||..||.- +.+||.+.+
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~---v~~le~~~~ 46 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQ---VVTLKELHS 46 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 46889999999999999999999999986 555655444
No 7
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.29 E-value=0.0057 Score=51.91 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=75.8
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHHH
Q 018357 223 SELLKVIGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLAT 302 (357)
Q Consensus 223 S~llkLL~~~LepLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~~ 302 (357)
+.+=.+|...| +||++|...|..+...-.....+|.++|...-.-|++.+.... .|..++..|++.
T Consensus 9 ~~lH~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~----------~~~p~V~aaid~--- 74 (118)
T 2y39_A 9 GDLHEILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNP----------AWSPEVEAATQE--- 74 (118)
T ss_dssp CCHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------SCCHHHHHHHHH---
T ss_pred CchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------ccCHHHHHHHHH---
Confidence 33444566677 7999999999999999999999999999999999999986431 133344444433
Q ss_pred HHHHHHHHhHHHHHH---HHHHHHhcCHHHHHHHHHHHHHH
Q 018357 303 LENFIHQADLLRQQT---LQQMHRILTARQAARALLVINDY 340 (357)
Q Consensus 303 Le~fv~qAD~LR~qT---L~~m~~ILTprQAArfLlAl~ey 340 (357)
|-...-.|+..| +-+|..||||-|+.+|=-.+.+-
T Consensus 75 ---~h~~mG~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 75 ---VERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333445588888 66789999999999997666543
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=96.60 E-value=0.0023 Score=48.39 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=25.3
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 018357 71 KALRRLAQNREAARKSRLRKKAYVQQLENSRLRLA 105 (357)
Q Consensus 71 ~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~ 105 (357)
|-.++.-+||.||.+||.|||.+++.||..--.|.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~ 36 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELE 36 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999998744443
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=95.35 E-value=0.0053 Score=51.28 Aligned_cols=40 Identities=33% Similarity=0.470 Sum_probs=32.7
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 71 KALRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQR 113 (357)
Q Consensus 71 ~~~~rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~~ 113 (357)
|-.||--.||.+|+.||.||.+.+..||.- +.+|.+|+++
T Consensus 37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~e---~~~L~~e~e~ 76 (107)
T 3a5t_A 37 KQRRRTLKNRGYAASCRVKRVTQKEELEKQ---KAELQQEVEK 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTSSTTTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 678999999999999999999999999976 4444444443
No 10
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=94.69 E-value=0.21 Score=43.45 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=62.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHHHHHHHHHHH
Q 018357 232 HLEPLTDQQLMGICNLQQSSQQAEDALSQ-GMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLATLENFIHQA 310 (357)
Q Consensus 232 ~LepLTeqQl~~I~~Lqqst~qaEdaLsq-gma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~~Le~fv~qA 310 (357)
.| +||++|...|..|.+..+.+...+.. .++ .+-+.+.++.+ +-+ .+. ..++.+...-.+.
T Consensus 43 ~L-~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~f------Dea----a~r---al~~~~~~~~~e~ 104 (145)
T 3itf_A 43 GI-SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAENF------DEN----AVR---AQAEKMANEQIAR 104 (145)
T ss_dssp TC-CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSSC------CHH----HHH---HHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCCC------CHH----HHH---HHHHHHHHHHHHH
Confidence 44 69999999999999887776554432 222 23333433221 111 111 1223344444444
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcc
Q 018357 311 DLLRQQTLQQMHRILTARQAARALLVINDYTSRLRALSS 349 (357)
Q Consensus 311 D~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rLRalss 349 (357)
--.|.++-.+|..||||-|-+.|---..+-...++.++.
T Consensus 105 ~v~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~~~~~~ 143 (145)
T 3itf_A 105 QVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQ 143 (145)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457888899999999999999998877766666665543
No 11
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=94.51 E-value=0.12 Score=40.76 Aligned_cols=47 Identities=28% Similarity=0.290 Sum_probs=35.7
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 018357 69 DQKALRRLAQNREAARKSRLRKKAYVQQLENS-----------RLRLAQLEQELQRAR 115 (357)
Q Consensus 69 ~~~~~~rl~~nreaar~sr~rkk~y~~~le~s-----------r~~l~qleqel~~ar 115 (357)
|++-..|--.|.+||++||-++|.-.+.++.. +.++.+|+.|+...|
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788999999999999999988887543 234556666666665
No 12
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.73 E-value=0.2 Score=40.23 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=36.3
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 018357 69 DQKALRRLAQNREAARKSRLRKKAYVQQLENS-----------RLRLAQLEQELQRARQ 116 (357)
Q Consensus 69 ~~~~~~rl~~nreaar~sr~rkk~y~~~le~s-----------r~~l~qleqel~~ar~ 116 (357)
|++-..|-..|.+||++||-.+|.=.++++.. +.++.+|+.|++..|.
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888999999999999998877666432 3456677777777763
No 13
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=89.93 E-value=0.86 Score=36.87 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=29.4
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 018357 69 DQKALRRLAQNREAARKSRLRKKAYVQQLENSRL 102 (357)
Q Consensus 69 ~~~~~~rl~~nreaar~sr~rkk~y~~~le~sr~ 102 (357)
.-|-.||--+||-+|..||-||-.-+..||.-..
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~ 58 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKT 58 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999998743
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=87.63 E-value=0.26 Score=40.03 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=23.4
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 018357 70 QKALRRLAQNREAARKSRLRKKAYVQQLE 98 (357)
Q Consensus 70 ~~~~~rl~~nreaar~sr~rkk~y~~~le 98 (357)
-+..||-..||-||++||.||..-+..||
T Consensus 61 ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 61 IRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 35678999999999999999987665554
No 15
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=86.79 E-value=0.28 Score=41.98 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=54.1
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHHHHHHHHHH
Q 018357 230 GNHLEPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLATLENFIHQ 309 (357)
Q Consensus 230 ~~~LepLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~~Le~fv~q 309 (357)
...| +||++|...|..|.+..+..-.. .+....+.+.+.+.++.+ +-+ .+.. .++.+...-.+
T Consensus 29 ~~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~f------Dea----av~a---l~~~~~~~~~e 91 (138)
T 3oeo_A 29 FKDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTF------DKV----KAEA---QIAKMEEQRKA 91 (138)
T ss_dssp -CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSC------CHH----HHHH---HHGGGSHHHHH
T ss_pred HhcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCC------CHH----HHHH---HHHHHHHHHHH
Confidence 3566 69999999999998777554221 111222334444433211 111 1111 12223333344
Q ss_pred HhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 018357 310 ADLLRQQTLQQMHRILTARQAARALLVINDYTSRLR 345 (357)
Q Consensus 310 AD~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rLR 345 (357)
.--.|.++..+|..||||-|-+.|---+.+-..+++
T Consensus 92 ~~~~~~~~~~~~~~vLTPEQr~q~~~~~~kr~~~~~ 127 (138)
T 3oeo_A 92 NMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERP 127 (138)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 445688899999999999999998776665554444
No 16
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=85.13 E-value=1.3 Score=36.70 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=46.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCchhhhHhHHHHHHHHHHHHHHHHHHHhHHH
Q 018357 235 PLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSASSLGPTSSGNVADYMGQMALAMGKLATLENFIHQADLLR 314 (357)
Q Consensus 235 pLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqslad~la~~~~g~~~~g~va~~~~qm~~Am~kl~~Le~fv~qAD~LR 314 (357)
+||++|...|-.|....+.+-...+. +.- +.+-+.+.++.+ |-+ .+....+++ ...-.+.--.|
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~--~~r-~~m~~Li~ad~F------DEa----aar~l~~~~---~~~~~e~~v~~ 80 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPL--EER-RAMHDIIASDTF------DKA----KAEAQIAKM---EEQRKANMLAH 80 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCH--HHH-HHHHHHHSSSSC------CHH----HHHHHHHHT---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccH--HHH-HHHHHHhccCCC------CHH----HHHHHHHHH---HHHHHHHHHHH
Confidence 69999999999998877665322221 111 223344443322 111 111112222 12222222356
Q ss_pred HHHHHHHHHhcCHHHHHHHH
Q 018357 315 QQTLQQMHRILTARQAARAL 334 (357)
Q Consensus 315 ~qTL~~m~~ILTprQAArfL 334 (357)
.++=++|..||||-|-+.|-
T Consensus 81 ~r~~~qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 81 METQNKIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 67788999999999998874
No 17
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=82.31 E-value=17 Score=32.31 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018357 234 EPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDTLSAS 276 (357)
Q Consensus 234 epLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqslad~la~~ 276 (357)
-+||++|...|..|.++-+.+-.+|.+.|...++.+-+.+.++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~ 108 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTAS 108 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999999999999999999888888776543
No 18
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=73.49 E-value=0.66 Score=37.57 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=18.3
Q ss_pred HHHHHHHhhHHHHHHhhhhHH
Q 018357 71 KALRRLAQNREAARKSRLRKK 91 (357)
Q Consensus 71 ~~~~rl~~nreaar~sr~rkk 91 (357)
+..||-..||.||+.||.||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 346889999999999999984
No 19
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=71.68 E-value=6.3 Score=30.77 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=31.6
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 77 AQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQ 112 (357)
Q Consensus 77 ~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~ 112 (357)
..|+.+|-.+=.|||.|-++|+.---.+.+||+.+.
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999999999999764
No 20
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=69.55 E-value=6.7 Score=27.31 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 90 KKAYVQQLENSRLRLAQLEQELQRARQ 116 (357)
Q Consensus 90 kk~y~~~le~sr~~l~qleqel~~ar~ 116 (357)
-|.|||.||..-..|..|..-|.-|+.
T Consensus 8 lknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 368999999999999999888887764
No 21
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=57.22 E-value=0.42 Score=40.30 Aligned_cols=30 Identities=40% Similarity=0.597 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018357 93 YVQQLENSRLRLAQLEQELQRARQQGIFIA 122 (357)
Q Consensus 93 y~~~le~sr~~l~qleqel~~ar~qg~~~~ 122 (357)
-|+|||.||.+|+++=.+|++.|+|..++-
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln 105 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLN 105 (115)
T ss_dssp HHHCCCSSCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999987763
No 22
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=54.18 E-value=39 Score=25.02 Aligned_cols=39 Identities=41% Similarity=0.343 Sum_probs=23.9
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 74 RRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQRAR 115 (357)
Q Consensus 74 ~rl~~nreaar~sr~rkk~y~~~le~sr~~l~qleqel~~ar 115 (357)
++--.||-|+||||-+=| ++||--|---+---.|-.|.|
T Consensus 4 ~kryknr~asrk~rakfk---n~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFK---QLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccchHHH
Confidence 344689999999998854 555544443433344444444
No 23
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=50.14 E-value=99 Score=24.88 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=32.8
Q ss_pred cCCCChHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018357 232 HLEPLTDQQLM-----GICNLQQSSQQAEDALSQGMEALQQSLVDTLSA 275 (357)
Q Consensus 232 ~LepLTeqQl~-----~I~~Lqqst~qaEdaLsqgma~LQqslad~la~ 275 (357)
....|.++|.. +|+.|+..+.++.++ .+||.++.....+....
T Consensus 7 d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~ 54 (98)
T 2ke4_A 7 DFSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQM 54 (98)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGG
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcc
Confidence 34567777753 678888888888877 77899999888887754
No 24
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=42.81 E-value=21 Score=25.68 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 90 KKAYVQQLENSRLRLAQLEQELQRARQ 116 (357)
Q Consensus 90 kk~y~~~le~sr~~l~qleqel~~ar~ 116 (357)
++.|++.||.. +.+||+.|...++
T Consensus 42 ~~~~~~~L~~r---i~~Le~~l~~l~~ 65 (70)
T 1zme_C 42 STKYLQQLQKD---LNDKTEENNRLKA 65 (70)
T ss_dssp EHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34689999886 8888988887664
No 25
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=41.03 E-value=40 Score=31.40 Aligned_cols=43 Identities=33% Similarity=0.465 Sum_probs=28.9
Q ss_pred HhhHHHH-HHhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhc
Q 018357 77 AQNREAA-RKSRLRKKAYVQQLENSR------LRLAQLEQELQRARQQGI 119 (357)
Q Consensus 77 ~~nreaa-r~sr~rkk~y~~~le~sr------~~l~qleqel~~ar~qg~ 119 (357)
.+|||.. ..+|.||+.-..++..-. .||..|||||.||-+..+
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~l 148 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESL 148 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhh
Confidence 4788876 445666555555554221 468899999999997764
No 26
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=40.83 E-value=14 Score=27.02 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 90 KKAYVQQLENSRLRLAQLEQELQRAR 115 (357)
Q Consensus 90 kk~y~~~le~sr~~l~qleqel~~ar 115 (357)
++.||+.||.. +.+||..|+..+
T Consensus 47 ~~~~~~~Le~r---i~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKR---FKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHCC-
T ss_pred cHHHHHHHHHH---HHHHHHHHHHHh
Confidence 45899999985 889998887644
No 27
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=34.27 E-value=33 Score=26.39 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018357 94 VQQLENSRLRLAQLEQELQRARQQGIFIAT 123 (357)
Q Consensus 94 ~~~le~sr~~l~qleqel~~ar~qg~~~~~ 123 (357)
-|.||.+|..+..||||+-+-|=-=+|+-|
T Consensus 32 EqeLe~Ck~sIrrLE~evn~ErFrmIYLQT 61 (72)
T 1k1f_A 32 EQELERAKASIRRLEQEVNQERFRMIYLQT 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 367999999999999999988766666543
No 28
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=29.42 E-value=4.3e+02 Score=26.22 Aligned_cols=174 Identities=13% Similarity=0.151 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhHHHHHHHHHHhHHHHHHhhhhccccchhhhccCCCCchhHHHHhhh
Q 018357 138 VLAFDLDYVHWVDEHQRLINDLRSAVNSSMGDNELRHLVDGVMAHYEEVFQLKSIGTKADVFHMLSGMWKTPVERCFMWL 217 (357)
Q Consensus 138 ~~~F~~~Y~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~~~HY~eyf~~Ks~aAk~DVf~llsg~W~TplER~FLWi 217 (357)
+..|...|..=+.+....+.-|..|..+-.+...|+.+.+-++ .+.+|...-+.... .
T Consensus 170 ~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL-~~GN~mN~g~~~g~---------------------A 227 (457)
T 3obv_E 170 AILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL-LVGNYMNAGSRNAG---------------------A 227 (457)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHTTTSTTCS---------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHhhhhccCCcCCC---------------------e
Confidence 6667777777777777777777777655434456777776665 34444443211111 2
Q ss_pred cCCCchHHHHHH---------------h-------hc-------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 218 GGFRSSELLKVI---------------G-------NH-------LEPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQS 268 (357)
Q Consensus 218 GGfRPS~llkLL---------------~-------~~-------LepLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqs 268 (357)
-||+-+.|.||. . |. |..+.......+.+|+..+.+ |..++..++..
T Consensus 228 ~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~----L~~~l~~v~~~ 303 (457)
T 3obv_E 228 FGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQ----MKKQIADVERD 303 (457)
T ss_dssp SCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTCCHHHHHHHHHH----HHHHHHHHHHH
T ss_pred eeEehHHHHHHHhhhcCCCCccHHHHHHHHHHHcCccccCChhhhhhHHhhccCCHHHHHHHHHH----HHHHHHHHHHH
Confidence 355555555542 1 22 333333323344555444443 44566666554
Q ss_pred HhhhhhhccCCCCCCCchhhhHhH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 018357 269 LVDTLSASSLGPTSSGNVADYMGQ----MALAMGKLATLENFIHQADLLRQQTLQQMHRILTARQAARALLVINDYTSRL 344 (357)
Q Consensus 269 lad~la~~~~g~~~~g~va~~~~q----m~~Am~kl~~Le~fv~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rL 344 (357)
+...... .... ..+... +..|..++..|......+..+-..++.-...=-...+.-+|+--+.+|...+
T Consensus 304 l~~~~~~-----~~~~--d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~f 376 (457)
T 3obv_E 304 VQNFPAA-----TDEK--DKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMF 376 (457)
T ss_dssp HHSCCCC-----SSTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhccCC-----cchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4321100 0011 123233 3557778888888888887766655554432111223346776666664433
No 29
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=28.49 E-value=36 Score=25.35 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 89 RKKAYVQQLENSRLRLAQLEQELQRARQ 116 (357)
Q Consensus 89 rkk~y~~~le~sr~~l~qleqel~~ar~ 116 (357)
-+.+||+.|+. |+..|||.+..|.+
T Consensus 31 qReayV~gll~---~i~eleq~~~~a~~ 55 (58)
T 3e1r_A 31 QREVYVKGLLA---KIFELEKKTETAAH 55 (58)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHC----
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhhh
Confidence 45689999987 68888988876653
No 30
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.30 E-value=2e+02 Score=22.07 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCchhhhHHHHHHHHHHHHhhHHH
Q 018357 92 AYVQQLENSRLRLAQLEQELQRARQQGIFIATGVSGDIGHSVAGNGVLAFDLDYVHWVDEHQRLIN 157 (357)
Q Consensus 92 ~y~~~le~sr~~l~qleqel~~ar~qg~~~~~~~~~~~~~~~~~~g~~~F~~~Y~~Wleeq~r~l~ 157 (357)
.+...|+.. |.+|+..++..+..|..-| ..+..|...+.+|-....+...
T Consensus 25 ~~~~~i~~~---l~~L~~~v~~L~~~g~W~G-------------~A~~ay~~~~~~W~~~a~~l~~ 74 (103)
T 4i0x_B 25 GFKEFVTEN---LDQLESRAQKLVQSGQWAG-------------AAAAAYSQAHKEWMDAARELVE 74 (103)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHTSSCH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHhcCCCeec-------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 566777776 8889999988776664432 2478999999999876665433
No 31
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.40 E-value=30 Score=25.54 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 86 SRLRKKAYVQQLENSRLRLAQLEQELQRA 114 (357)
Q Consensus 86 sr~rkk~y~~~le~sr~~l~qleqel~~a 114 (357)
..+.++.||+.||.. |.+||..|+..
T Consensus 52 ~~~~~~~~~~~L~~r---i~~LE~~l~~l 77 (81)
T 1hwt_C 52 KELLKDNELKKLRER---VKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHTTC---
T ss_pred cccchHHHHHHHHHH---HHHHHHHHHHh
Confidence 344567899999875 88999877653
No 32
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.81 E-value=67 Score=23.79 Aligned_cols=21 Identities=43% Similarity=0.499 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 92 AYVQQLENSRLRLAQLEQELQRAR 115 (357)
Q Consensus 92 ~y~~~le~sr~~l~qleqel~~ar 115 (357)
+-||+||-+ -++.|||+.|-+
T Consensus 25 ~kv~~Le~~---c~e~eQEieRL~ 45 (58)
T 3a2a_A 25 AKIQHLEFS---CSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHH
Confidence 568999988 888999999875
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.53 E-value=62 Score=22.66 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 018357 91 KAYVQQLENSRLRL 104 (357)
Q Consensus 91 k~y~~~le~sr~~l 104 (357)
|||+-.||+..-.|
T Consensus 2 KaYl~eLE~r~k~l 15 (42)
T 2oqq_A 2 SAYLSELENRVKDL 15 (42)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 79999999876433
No 34
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.47 E-value=59 Score=24.67 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018357 92 AYVQQLENSRLRLAQLEQELQRARQQG 118 (357)
Q Consensus 92 ~y~~~le~sr~~l~qleqel~~ar~qg 118 (357)
.||+.|+.. +..|+.|++..++|+
T Consensus 57 ~YI~~L~~~---~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 57 EYIQYMRRK---NHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHH---HHHHHHHHHTHHHHC
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 699999886 788888888888764
No 35
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=23.32 E-value=4.7e+02 Score=24.56 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhhcCCCchhHHHHHHHHH
Q 018357 138 VLAFDLDYVHWVDEHQRLINDLRSAVNSSMGDNELRHLVDGVM 180 (357)
Q Consensus 138 ~~~F~~~Y~~Wleeq~r~l~eLR~AL~s~~~D~eLr~LVd~~~ 180 (357)
+..|...|..=+.+....+.-|..|..+-.+...|+.+.+-++
T Consensus 99 ~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL 141 (340)
T 1v9d_A 99 AILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL 141 (340)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC----
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 5667777777677777777777776544333345665555444
Done!