Query 018357
Match_columns 357
No_of_seqs 186 out of 247
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 14:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018357.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018357hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 77.6 0.65 4.7E-05 34.5 2.7 19 73-91 50-68 (74)
2 d1v9da_ a.207.1.1 (A:) Diaphan 52.4 68 0.0049 27.9 11.8 53 293-345 249-301 (332)
3 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 44.7 8.5 0.00062 27.5 3.3 30 93-122 31-60 (67)
4 d1uuja_ a.221.1.1 (A:) Lissenc 25.2 24 0.0018 25.6 3.1 19 324-342 1-19 (76)
5 d2c35a1 a.60.8.2 (A:14-142) RN 22.4 27 0.002 27.1 3.1 77 169-247 41-120 (129)
6 d1uz3a1 a.283.1.1 (A:13-102) E 21.1 1.5E+02 0.011 21.9 7.2 30 150-181 33-62 (90)
7 d1zbdb_ g.50.1.1 (B:) Effector 20.9 56 0.0041 24.7 4.7 39 234-272 1-39 (124)
8 d1uklc_ a.38.1.1 (C:) SREBP-2 18.8 52 0.0038 22.0 3.6 22 92-116 33-54 (61)
9 d1urfa_ a.2.6.1 (A:) Protein k 17.2 56 0.0041 23.7 3.6 29 92-120 46-75 (81)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 16.6 1.5E+02 0.011 22.8 6.4 35 231-265 80-114 (129)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=77.63 E-value=0.65 Score=34.46 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=17.4
Q ss_pred HHHHHhhHHHHHHhhhhHH
Q 018357 73 LRRLAQNREAARKSRLRKK 91 (357)
Q Consensus 73 ~~rl~~nreaar~sr~rkk 91 (357)
.||-..|+-||+.||.||-
T Consensus 50 IRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 50 IRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhhh
Confidence 5899999999999999984
No 2
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.42 E-value=68 Score=27.88 Aligned_cols=53 Identities=6% Similarity=-0.004 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 018357 293 MALAMGKLATLENFIHQADLLRQQTLQQMHRILTARQAARALLVINDYTSRLR 345 (357)
Q Consensus 293 m~~Am~kl~~Le~fv~qAD~LR~qTL~~m~~ILTprQAArfLlAl~ey~~rLR 345 (357)
+..|..++..|...+.+++..-.+++.-...--+..+.-+||--+..|...+.
T Consensus 249 l~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~~~ 301 (332)
T d1v9da_ 249 VKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFL 301 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46678899999999999998877777766544444567788888888765553
No 3
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.73 E-value=8.5 Score=27.55 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018357 93 YVQQLENSRLRLAQLEQELQRARQQGIFIA 122 (357)
Q Consensus 93 y~~~le~sr~~l~qleqel~~ar~qg~~~~ 122 (357)
--|.||.++..+..|||||-+-|=.-+|+-
T Consensus 31 iE~eLerCk~~irrLeqel~~ErF~~iYLQ 60 (67)
T d1k1fa_ 31 IEQELERAKASIRRLEQEVNQERFRMIYLQ 60 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999988776556653
No 4
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.19 E-value=24 Score=25.64 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=17.3
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 018357 324 ILTARQAARALLVINDYTS 342 (357)
Q Consensus 324 ILTprQAArfLlAl~ey~~ 342 (357)
|||++|+.+-=-||.+|+.
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999975
No 5
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.38 E-value=27 Score=27.08 Aligned_cols=77 Identities=19% Similarity=0.138 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhhccccchhhhccCCCCchhHHHHhhhcCCCchHH--HHHHhhcCC-CChHHHHHHHH
Q 018357 169 DNELRHLVDGVMAHYEEVFQLKSIGTKADVFHMLSGMWKTPVERCFMWLGGFRSSEL--LKVIGNHLE-PLTDQQLMGIC 245 (357)
Q Consensus 169 D~eLr~LVd~~~~HY~eyf~~Ks~aAk~DVf~llsg~W~TplER~FLWiGGfRPS~l--lkLL~~~Le-pLTeqQl~~I~ 245 (357)
+.+|..+..+.+.|-...-+.+..-+...|..+++..=.++.|.+ =|+..+|+.+ ++.|.+.++ .+|++++..|=
T Consensus 41 ~~~l~~~~~ktl~Yl~~fak~~~~es~~~~~~ll~~~~L~~~E~~--~i~Nl~P~~~~El~~li~~l~~r~see~l~~iL 118 (129)
T d2c35a1 41 EQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA--CLANLCPETAEESKALIPSLEGRFEDEELQQIL 118 (129)
T ss_dssp SCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHH--HHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcccCCCHHHHH--HHhCCCCCCHHHHHHHHHHhccCCCHHHHHHHH
Confidence 567888888888755443334556667778888877778888887 4588888864 455678885 68999988774
Q ss_pred HH
Q 018357 246 NL 247 (357)
Q Consensus 246 ~L 247 (357)
+.
T Consensus 119 d~ 120 (129)
T d2c35a1 119 DD 120 (129)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.14 E-value=1.5e+02 Score=21.86 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=21.1
Q ss_pred HHHhhHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 018357 150 DEHQRLINDLRSAVNSSMGDNELRHLVDGVMA 181 (357)
Q Consensus 150 eeq~r~l~eLR~AL~s~~~D~eLr~LVd~~~~ 181 (357)
.+....+.+||..| +++|++.+..|.++.+
T Consensus 33 weke~lLt~LR~~L--~IS~eeHr~elrr~~~ 62 (90)
T d1uz3a1 33 KEKKDLLGELSKVL--SISTERHRAEVRRAVN 62 (90)
T ss_dssp HHHHHHHHHHHHHT--TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHhcc
Confidence 46777888888877 4566777777666654
No 7
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.90 E-value=56 Score=24.73 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018357 234 EPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVDT 272 (357)
Q Consensus 234 epLTeqQl~~I~~Lqqst~qaEdaLsqgma~LQqslad~ 272 (357)
++||+++...|.++-++-...+..-.+.+.++.+.+.+.
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~ 39 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 39 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999888888877777777777778888888877765
No 8
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.82 E-value=52 Score=22.04 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 92 AYVQQLENSRLRLAQLEQELQRARQ 116 (357)
Q Consensus 92 ~y~~~le~sr~~l~qleqel~~ar~ 116 (357)
.||+.|+.. ...|++|....+.
T Consensus 33 ~YI~~Lq~~---~~~L~~e~~~L~~ 54 (61)
T d1uklc_ 33 DYIKYLQQV---NHKLRQENMVLKL 54 (61)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHH
Confidence 799999998 5555666665553
No 9
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.21 E-value=56 Score=23.69 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=23.6
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018357 92 AYV-QQLENSRLRLAQLEQELQRARQQGIF 120 (357)
Q Consensus 92 ~y~-~~le~sr~~l~qleqel~~ar~qg~~ 120 (357)
+.+ +.|..|..||..|.++|++++|.+..
T Consensus 46 ~eaq~~l~eS~~Ki~lLr~~L~~~~q~~~~ 75 (81)
T d1urfa_ 46 LTAQQMLQDSKTKIDIIRMQLRRALQADQL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444 45889999999999999999987643
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.58 E-value=1.5e+02 Score=22.79 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=27.4
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018357 231 NHLEPLTDQQLMGICNLQQSSQQAEDALSQGMEAL 265 (357)
Q Consensus 231 ~~LepLTeqQl~~I~~Lqqst~qaEdaLsqgma~L 265 (357)
|.++.-.+.|+.+|..|+.+.+.+|..+.+.+.+.
T Consensus 80 P~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~ 114 (129)
T d1ykhb1 80 PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKK 114 (129)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555668899999999999999998887655543
Done!