Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>018358
MSSPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFARE
AREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQL
DDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHR
TGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQ
MLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLER
GVWNSVRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFYQAQ

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  018358
        (357 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2134791 - symbol:AT4G19160 species:3702 "Arabi...   123  4.8e-10   3


>TAIR|locus:2134791 [details] [associations]
            symbol:AT4G19160 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 IPI:IPI00542701 RefSeq:NP_974572.1
            UniGene:At.1926 ProteinModelPortal:F4JSG8 DNASU:827654
            EnsemblPlants:AT4G19160.2 GeneID:827654 KEGG:ath:AT4G19160
            OMA:ATNRDII PhylomeDB:F4JSG8 Uniprot:F4JSG8
        Length = 453

 Score = 123 (48.4 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query:   142 VLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRI 200
             VLE++   LFD +GF+RT+     ++P + YLHSVL  R  +A ++S+IY E+ K L +
Sbjct:   200 VLEAVNTVLFDLRGFKRTSIT---LDPENSYLHSVLNCRCSTAFLISVIYIEVCKRLNV 255

 Score = 83 (34.3 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query:   285 GLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLILLESDAKELR-DYSILLYHCGL 343
             GL L S  +  + +    +  +R  D+R A+AA ERL++L+     LR D  ++LY+   
Sbjct:   344 GLMLTSPLSQLNNISSSNFPLLRPQDLRLAIAAAERLLILQPHNWALRRDLGMMLYYDRQ 403

Query:   344 YEQSLQYLKFYQA 356
             Y +++Q L    A
Sbjct:   404 YGEAVQELSICMA 416

 Score = 46 (21.3 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query:    77 RETSI-SINKCVDLGKTALHIAAEDDSLIS 105
             RE SI S +  + + K   +IAAED++ ++
Sbjct:   102 REISIQSKDSEISIAKVLFYIAAEDEAFLA 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      357       344   0.00097  116 3  11 22  0.36    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  226 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.11u 0.08s 27.19t   Elapsed:  00:00:02
  Total cpu time:  27.11u 0.08s 27.19t   Elapsed:  00:00:02
  Start:  Sat May 11 09:29:20 2013   End:  Sat May 11 09:29:22 2013

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