Query 018358
Match_columns 357
No_of_seqs 193 out of 446
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10941 hypothetical protein; 100.0 1.8E-52 4E-57 399.2 19.6 213 83-357 8-244 (269)
2 COG2912 Uncharacterized conser 100.0 6.6E-41 1.4E-45 316.5 15.2 209 86-357 12-244 (269)
3 PF13369 Transglut_core2: Tran 99.9 9.5E-25 2.1E-29 192.2 8.4 131 114-248 1-152 (152)
4 PF13371 TPR_9: Tetratricopept 98.4 6.5E-07 1.4E-11 67.7 5.4 50 307-356 7-57 (73)
5 PF13432 TPR_16: Tetratricopep 96.6 0.0054 1.2E-07 45.1 5.7 50 307-356 9-59 (65)
6 PF13414 TPR_11: TPR repeat; P 95.9 0.014 3E-07 43.2 4.5 50 307-356 15-66 (69)
7 PF14559 TPR_19: Tetratricopep 95.2 0.034 7.4E-07 40.9 4.6 50 307-356 3-53 (68)
8 PRK15359 type III secretion sy 93.3 0.21 4.6E-06 43.1 6.1 50 307-356 70-120 (144)
9 PRK11189 lipoprotein NlpI; Pro 93.2 0.21 4.5E-06 48.3 6.4 50 307-356 110-160 (296)
10 PF13431 TPR_17: Tetratricopep 93.2 0.078 1.7E-06 34.9 2.4 32 318-349 2-34 (34)
11 PLN03088 SGT1, suppressor of 93.1 0.21 4.5E-06 49.9 6.3 51 306-356 47-98 (356)
12 PRK15359 type III secretion sy 92.5 0.32 6.9E-06 42.0 5.9 50 306-355 35-85 (144)
13 PF01841 Transglut_core: Trans 91.8 0.029 6.4E-07 45.5 -1.3 63 134-201 9-71 (113)
14 PLN03098 LPA1 LOW PSII ACCUMUL 91.6 0.41 8.8E-06 49.5 6.4 50 307-356 87-140 (453)
15 cd00189 TPR Tetratricopeptide 91.4 0.58 1.3E-05 33.6 5.5 49 307-355 46-95 (100)
16 PLN03088 SGT1, suppressor of 90.7 0.57 1.2E-05 46.8 6.4 51 306-356 13-64 (356)
17 TIGR02552 LcrH_SycD type III s 90.5 0.71 1.5E-05 38.2 5.8 50 307-356 63-113 (135)
18 PF13512 TPR_18: Tetratricopep 90.1 0.66 1.4E-05 40.8 5.5 50 307-356 59-127 (142)
19 PF12895 Apc3: Anaphase-promot 88.2 0.43 9.3E-06 36.9 2.6 47 307-354 37-84 (84)
20 cd00189 TPR Tetratricopeptide 88.0 1.3 2.8E-05 31.8 5.1 49 308-356 13-62 (100)
21 PF12895 Apc3: Anaphase-promot 87.8 0.76 1.7E-05 35.5 3.9 46 308-353 2-50 (84)
22 TIGR02552 LcrH_SycD type III s 87.1 1.4 3E-05 36.4 5.4 51 305-355 27-78 (135)
23 PF03704 BTAD: Bacterial trans 86.9 3.6 7.7E-05 34.9 7.9 49 307-355 74-123 (146)
24 TIGR02521 type_IV_pilW type IV 86.5 2.1 4.5E-05 37.2 6.4 48 308-355 148-196 (234)
25 PRK12370 invasion protein regu 86.4 1.5 3.2E-05 46.2 6.3 49 307-355 350-399 (553)
26 COG4785 NlpI Lipoprotein NlpI, 85.8 0.62 1.3E-05 44.2 2.7 50 307-356 111-161 (297)
27 COG5010 TadD Flp pilus assembl 85.0 1.7 3.6E-05 41.8 5.3 49 304-352 109-158 (257)
28 PRK11189 lipoprotein NlpI; Pro 85.0 2.3 5E-05 41.0 6.4 50 307-356 76-126 (296)
29 PRK10370 formate-dependent nit 84.9 2.3 5.1E-05 38.8 6.1 46 311-356 126-172 (198)
30 KOG0543 FKBP-type peptidyl-pro 84.5 3.3 7.1E-05 42.2 7.4 50 306-355 268-318 (397)
31 TIGR02795 tol_pal_ybgF tol-pal 84.1 2.9 6.4E-05 33.0 5.7 52 305-356 49-104 (119)
32 PF13424 TPR_12: Tetratricopep 82.9 5.4 0.00012 29.9 6.5 48 308-355 18-73 (78)
33 KOG0553 TPR repeat-containing 82.9 2.6 5.6E-05 41.4 5.7 49 307-355 93-142 (304)
34 KOG1126 DNA-binding cell divis 82.5 2.3 5.1E-05 45.5 5.6 48 307-354 535-583 (638)
35 TIGR02521 type_IV_pilW type IV 82.3 3.8 8.2E-05 35.6 6.2 49 307-355 77-126 (234)
36 TIGR02795 tol_pal_ybgF tol-pal 82.1 4.6 0.0001 31.9 6.1 51 306-356 13-67 (119)
37 CHL00033 ycf3 photosystem I as 81.6 4.3 9.3E-05 35.4 6.2 48 308-355 48-99 (168)
38 cd05804 StaR_like StaR_like; a 81.0 3.7 8E-05 39.6 6.1 47 307-353 160-211 (355)
39 TIGR00540 hemY_coli hemY prote 80.7 3.2 7E-05 41.9 5.8 52 305-356 163-215 (409)
40 TIGR03302 OM_YfiO outer membra 80.6 4.2 9.1E-05 37.0 6.1 51 306-356 44-98 (235)
41 PRK12370 invasion protein regu 80.3 3.6 7.9E-05 43.3 6.2 49 307-355 384-433 (553)
42 PF07719 TPR_2: Tetratricopept 80.2 3.8 8.3E-05 25.5 4.1 28 329-356 2-29 (34)
43 TIGR00990 3a0801s09 mitochondr 79.8 4 8.7E-05 43.3 6.4 48 307-354 377-425 (615)
44 PF13428 TPR_14: Tetratricopep 79.6 1.9 4.2E-05 29.4 2.6 30 307-336 13-43 (44)
45 PRK10866 outer membrane biogen 79.2 4.8 0.0001 38.1 6.1 51 306-356 43-97 (243)
46 PRK02603 photosystem I assembl 78.1 5.1 0.00011 35.1 5.6 47 307-353 47-97 (172)
47 PRK10370 formate-dependent nit 78.0 5.9 0.00013 36.1 6.1 50 307-356 85-138 (198)
48 TIGR00990 3a0801s09 mitochondr 76.1 5.9 0.00013 42.1 6.3 48 307-354 172-220 (615)
49 TIGR02917 PEP_TPR_lipo putativ 75.8 6 0.00013 41.9 6.3 49 307-355 34-83 (899)
50 PRK11447 cellulose synthase su 75.0 6.1 0.00013 45.5 6.5 50 307-356 473-523 (1157)
51 TIGR00540 hemY_coli hemY prote 74.8 6.6 0.00014 39.6 6.0 47 306-352 310-359 (409)
52 PRK10803 tol-pal system protei 74.4 7.7 0.00017 37.3 6.1 49 307-355 192-244 (263)
53 PF00515 TPR_1: Tetratricopept 74.3 7 0.00015 24.5 4.1 27 330-356 3-29 (34)
54 PRK15179 Vi polysaccharide bio 74.1 5.9 0.00013 43.4 5.8 47 307-353 132-179 (694)
55 PRK15174 Vi polysaccharide exp 73.6 7.2 0.00016 42.1 6.3 47 307-353 122-169 (656)
56 PRK11447 cellulose synthase su 73.4 6.4 0.00014 45.3 6.2 51 306-356 280-331 (1157)
57 CHL00033 ycf3 photosystem I as 73.2 8.7 0.00019 33.4 5.7 46 307-352 84-137 (168)
58 PRK15363 pathogenicity island 73.1 10 0.00022 33.9 6.1 48 307-354 81-129 (157)
59 PRK15179 Vi polysaccharide bio 73.0 7.3 0.00016 42.7 6.2 49 307-355 166-215 (694)
60 PRK10747 putative protoheme IX 71.5 7.8 0.00017 39.0 5.7 50 305-354 163-213 (398)
61 PRK15174 Vi polysaccharide exp 71.3 8.6 0.00019 41.6 6.2 49 307-355 330-379 (656)
62 PRK09782 bacteriophage N4 rece 70.9 8.7 0.00019 43.8 6.4 49 307-355 655-704 (987)
63 PF13429 TPR_15: Tetratricopep 69.5 5.2 0.00011 37.7 3.7 54 302-355 187-241 (280)
64 PRK10747 putative protoheme IX 69.3 13 0.00028 37.5 6.6 49 307-355 306-355 (398)
65 TIGR02917 PEP_TPR_lipo putativ 68.6 11 0.00023 40.0 6.2 48 307-355 816-864 (899)
66 PRK09782 bacteriophage N4 rece 68.4 11 0.00023 43.0 6.4 45 309-353 590-634 (987)
67 PRK11788 tetratricopeptide rep 68.4 13 0.00028 36.3 6.3 50 307-356 81-135 (389)
68 PF13512 TPR_18: Tetratricopep 68.0 14 0.0003 32.6 5.7 51 306-356 21-75 (142)
69 PRK10049 pgaA outer membrane p 67.9 11 0.00023 41.5 6.2 50 306-356 94-144 (765)
70 PF13174 TPR_6: Tetratricopept 67.7 4.5 9.8E-05 24.9 2.0 26 331-356 3-28 (33)
71 PF07079 DUF1347: Protein of u 67.6 9.4 0.0002 39.8 5.2 46 307-352 474-519 (549)
72 PF13429 TPR_15: Tetratricopep 67.4 5.3 0.00011 37.7 3.2 48 307-354 226-274 (280)
73 PRK02603 photosystem I assembl 66.1 17 0.00038 31.7 6.1 38 307-344 84-122 (172)
74 PRK11788 tetratricopeptide rep 66.0 14 0.00031 35.9 6.1 49 307-355 226-276 (389)
75 PF09295 ChAPs: ChAPs (Chs5p-A 65.8 11 0.00024 38.5 5.3 49 306-354 245-294 (395)
76 smart00460 TGc Transglutaminas 64.7 4 8.6E-05 29.9 1.5 26 176-201 1-26 (68)
77 PF13428 TPR_14: Tetratricopep 64.3 12 0.00026 25.3 3.8 29 328-356 1-29 (44)
78 PLN02789 farnesyltranstransfer 63.3 14 0.00031 36.5 5.5 42 310-351 87-131 (320)
79 PF13525 YfiO: Outer membrane 63.1 13 0.00029 33.7 4.9 51 306-356 16-70 (203)
80 PRK15363 pathogenicity island 62.8 18 0.00039 32.4 5.5 47 307-353 47-94 (157)
81 PRK10049 pgaA outer membrane p 62.7 16 0.00036 40.1 6.4 49 307-355 405-454 (765)
82 KOG0548 Molecular co-chaperone 61.2 17 0.00038 38.3 5.8 50 307-356 370-420 (539)
83 PF13414 TPR_11: TPR repeat; P 59.1 14 0.0003 26.8 3.6 29 328-356 3-31 (69)
84 PF13181 TPR_8: Tetratricopept 59.0 20 0.00043 22.2 3.9 26 331-356 4-29 (34)
85 KOG4234 TPR repeat-containing 57.9 20 0.00043 33.9 5.0 51 306-356 145-196 (271)
86 PF14561 TPR_20: Tetratricopep 57.6 27 0.00059 28.0 5.3 43 314-356 7-50 (90)
87 COG4105 ComL DNA uptake lipopr 57.0 23 0.0005 34.2 5.5 54 303-356 42-99 (254)
88 KOG0550 Molecular chaperone (D 56.8 14 0.00029 38.2 4.1 59 298-356 290-349 (486)
89 PF13176 TPR_7: Tetratricopept 56.1 5.6 0.00012 25.9 0.9 26 307-332 11-36 (36)
90 TIGR03302 OM_YfiO outer membra 54.9 30 0.00066 31.3 5.9 50 306-355 177-230 (235)
91 COG1305 Transglutaminase-like 54.0 55 0.0012 30.6 7.6 73 118-201 142-214 (319)
92 PRK10153 DNA-binding transcrip 53.6 31 0.00066 36.5 6.3 47 307-353 432-478 (517)
93 COG3063 PilF Tfp pilus assembl 53.3 26 0.00057 33.5 5.1 52 304-355 148-200 (250)
94 KOG0553 TPR repeat-containing 52.2 25 0.00054 34.7 4.9 46 307-352 127-173 (304)
95 PLN02789 farnesyltranstransfer 52.1 28 0.00061 34.4 5.5 35 307-341 154-189 (320)
96 PRK14574 hmsH outer membrane p 52.1 27 0.00057 39.2 5.8 50 306-355 45-95 (822)
97 KOG0624 dsRNA-activated protei 50.2 19 0.00041 36.6 3.8 59 298-356 75-134 (504)
98 COG3071 HemY Uncharacterized e 50.0 36 0.00079 34.8 5.8 57 299-355 298-355 (400)
99 smart00028 TPR Tetratricopepti 49.7 31 0.00067 19.2 3.5 25 331-355 4-28 (34)
100 COG4783 Putative Zn-dependent 49.1 39 0.00084 35.4 6.0 51 305-355 350-401 (484)
101 PF11846 DUF3366: Domain of un 48.2 48 0.001 29.7 5.9 49 306-354 122-170 (193)
102 PRK14574 hmsH outer membrane p 48.0 36 0.00079 38.1 6.0 49 307-355 114-163 (822)
103 PF12569 NARP1: NMDA receptor- 48.0 41 0.00089 35.6 6.2 47 307-353 206-253 (517)
104 PRK10803 tol-pal system protei 47.4 48 0.001 31.8 6.1 49 308-356 156-208 (263)
105 PRK11906 transcriptional regul 46.9 44 0.00095 34.9 6.0 46 310-355 353-399 (458)
106 PRK11906 transcriptional regul 46.3 38 0.00081 35.4 5.4 50 303-353 313-363 (458)
107 KOG1173 Anaphase-promoting com 44.5 44 0.00095 35.8 5.6 46 307-352 467-513 (611)
108 PF14853 Fis1_TPR_C: Fis1 C-te 44.5 27 0.00059 25.4 3.0 22 307-328 13-34 (53)
109 PF13432 TPR_16: Tetratricopep 44.4 25 0.00053 25.2 2.8 24 333-356 2-25 (65)
110 KOG3364 Membrane protein invol 41.5 39 0.00084 29.9 4.0 49 307-356 47-99 (149)
111 KOG1128 Uncharacterized conser 41.1 42 0.0009 36.9 4.9 49 307-355 497-546 (777)
112 PF07721 TPR_4: Tetratricopept 38.3 58 0.0013 19.6 3.4 22 331-352 4-25 (26)
113 KOG0624 dsRNA-activated protei 38.0 64 0.0014 32.9 5.3 50 307-356 319-369 (504)
114 KOG1156 N-terminal acetyltrans 37.9 39 0.00084 36.7 4.1 43 307-349 87-130 (700)
115 PF12688 TPR_5: Tetratrico pep 37.2 1.2E+02 0.0026 25.6 6.3 47 307-353 50-100 (120)
116 PF12688 TPR_5: Tetratrico pep 36.8 94 0.002 26.2 5.6 49 308-356 14-66 (120)
117 KOG2053 Mitochondrial inherita 36.6 50 0.0011 37.1 4.8 59 295-353 9-68 (932)
118 PLN03098 LPA1 LOW PSII ACCUMUL 34.5 54 0.0012 34.2 4.4 32 324-355 70-102 (453)
119 PRK10941 hypothetical protein; 34.3 6.8 0.00015 37.9 -2.0 23 286-308 166-189 (269)
120 PF09976 TPR_21: Tetratricopep 34.2 1.1E+02 0.0024 25.7 5.8 45 307-352 97-142 (145)
121 COG4235 Cytochrome c biogenesi 33.8 1.1E+02 0.0024 30.1 6.2 50 307-356 205-255 (287)
122 PF13374 TPR_10: Tetratricopep 33.3 69 0.0015 20.3 3.4 24 332-355 6-29 (42)
123 KOG1155 Anaphase-promoting com 33.2 66 0.0014 33.9 4.7 59 298-356 430-494 (559)
124 PRK15180 Vi polysaccharide bio 31.8 81 0.0018 33.5 5.1 48 306-353 300-348 (831)
125 PF13424 TPR_12: Tetratricopep 30.9 76 0.0016 23.4 3.8 27 330-356 7-33 (78)
126 PRK10866 outer membrane biogen 30.6 1.1E+02 0.0024 28.8 5.6 51 306-356 80-152 (243)
127 PF12862 Apc5: Anaphase-promot 30.3 91 0.002 24.7 4.3 53 303-355 6-68 (94)
128 PRK10153 DNA-binding transcrip 29.2 1.8E+02 0.0038 30.9 7.3 72 284-355 373-447 (517)
129 TIGR02561 HrpB1_HrpK type III 28.9 1.1E+02 0.0024 27.3 4.8 53 303-355 18-71 (153)
130 COG3071 HemY Uncharacterized e 28.5 1.1E+02 0.0024 31.3 5.4 55 300-354 158-213 (400)
131 KOG1125 TPR repeat-containing 28.2 95 0.0021 33.3 5.0 46 307-352 476-522 (579)
132 KOG4626 O-linked N-acetylgluco 28.0 1.5E+02 0.0034 32.5 6.5 55 301-355 290-347 (966)
133 KOG0547 Translocase of outer m 27.9 67 0.0014 34.1 3.8 66 290-355 354-421 (606)
134 cd05804 StaR_like StaR_like; a 27.8 1.4E+02 0.003 28.6 5.9 43 310-352 129-172 (355)
135 PF04405 ScdA_N: Domain of Unk 26.9 54 0.0012 24.1 2.2 35 18-62 17-52 (56)
136 KOG2067 Mitochondrial processi 26.6 2.3E+02 0.005 29.4 7.2 56 7-62 318-375 (472)
137 KOG4555 TPR repeat-containing 26.0 1.6E+02 0.0035 26.2 5.3 48 307-354 89-141 (175)
138 COG2956 Predicted N-acetylgluc 24.3 1.6E+02 0.0034 29.9 5.5 51 306-356 225-277 (389)
139 PF09976 TPR_21: Tetratricopep 23.1 1.7E+02 0.0037 24.6 5.0 47 307-353 60-110 (145)
140 PRK10992 iron-sulfur cluster r 22.6 4.2E+02 0.009 24.8 7.8 34 19-62 21-55 (220)
141 PF14853 Fis1_TPR_C: Fis1 C-te 22.1 1.2E+02 0.0027 21.9 3.3 24 333-356 6-29 (53)
142 PRK14720 transcript cleavage f 21.7 2.1E+02 0.0045 32.7 6.4 43 310-353 131-174 (906)
143 PF09613 HrpB1_HrpK: Bacterial 21.7 2.6E+02 0.0056 25.1 5.9 52 303-354 18-70 (160)
144 PLN03081 pentatricopeptide (PP 20.7 1.5E+02 0.0032 32.1 5.0 49 307-355 506-555 (697)
145 COG3063 PilF Tfp pilus assembl 20.6 2.1E+02 0.0045 27.6 5.3 47 306-352 46-93 (250)
146 TIGR03504 FimV_Cterm FimV C-te 20.5 1.6E+02 0.0035 20.5 3.5 24 332-355 3-26 (44)
147 PF10516 SHNi-TPR: SHNi-TPR; 20.4 1.5E+02 0.0032 20.1 3.1 23 334-356 7-29 (38)
148 KOG4626 O-linked N-acetylgluco 20.3 1.8E+02 0.0039 32.1 5.3 45 307-351 230-275 (966)
149 KOG2076 RNA polymerase III tra 20.3 1.6E+02 0.0035 33.2 5.1 44 309-352 463-507 (895)
No 1
>PRK10941 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-52 Score=399.24 Aligned_cols=213 Identities=20% Similarity=0.194 Sum_probs=187.0
Q ss_pred cCCCCcHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCcCCCCC
Q 018358 83 INKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNAR 162 (357)
Q Consensus 83 ~d~~~dL~eaAL~IA~~~~p~~~~~~v~ldv~~~~~~Ld~La~~v~~~~~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~ 162 (357)
++++++|.+|||+||++.+| ++|++++.++||+|+.+++.. ++...++.+++++||++||++|||+||++
T Consensus 8 ~~~~~~L~e~al~ia~~~~p-------dl~~~~~~~~L~~l~~~~~~~--l~~~~~~~~~l~~L~~~fy~~lgF~Gn~~- 77 (269)
T PRK10941 8 EFNKAPLCEGMILASQAIRR-------DFPSQDVYDELERLVSLAREE--ISQLLPQDEQLEKLIALFYGEWGFGGASG- 77 (269)
T ss_pred cccCccHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHh--ccccCCHHHHHHHHHHHHHHHhCCCCCcc-
Confidence 48899999999999999999 999999999999999999998 78889999999999999999999999999
Q ss_pred CCcCCcccccHHHHHhhccCChHHHHHHHHHHHHHhccc--cc--------------------cCCCceeeccccccccc
Q 018358 163 NQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL--------------------IDFDVEISFPLDLYSLP 220 (357)
Q Consensus 163 ~~y~dp~Ns~L~~VLe~R~GiPIsLaiIylevArRLglp--gv--------------------~~f~G~i~~p~d~~~l~ 220 (357)
+||+|+|||||+||+||+|+|||||+||++||+|+|+| || ++|+|+++.+++|..+.
T Consensus 78 -~Y~~p~ns~L~~VL~~R~G~PisL~il~l~iA~~lglp~~gV~fPghfllr~~~~d~~~~~IDPf~G~~L~~~~l~~~L 156 (269)
T PRK10941 78 -VYRLSDALWLDKVLKTRQGSAVSLGAILLWIANRLDLPLMPVIFPTQLILRADWLDGEMWLINPFNGETLDEHTLEVWL 156 (269)
T ss_pred -ccCCchhhHHHHHHHccCCCcHHHHHHHHHHHHHcCCCeeeeecCchheeeeecCCCceEEEeCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999 65 12233333333333322
Q ss_pred ccccCC-CCCCCCCCCCCChHHHHHHHHHHHHHhccccccccchhhHHHHHHHhhhhhhccCCCchhhhHhHHHhhhhHh
Q 018358 221 RGYQKQ-KSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLE 299 (357)
Q Consensus 221 ~~~~~~-~~~~~~~~~~~s~r~IL~RmL~NLK~~y~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ri~ 299 (357)
+++..+ ....++++.+++|++|+.|||+|||.+|++++
T Consensus 157 ~~~~g~~~~l~~~~L~~a~~~~il~Rml~nLK~~~~~~~----------------------------------------- 195 (269)
T PRK10941 157 KGNISPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEK----------------------------------------- 195 (269)
T ss_pred HhhcCCcccCCHHHcCCCCHHHHHHHHHHHHHHHHHHcC-----------------------------------------
Confidence 233332 22234567789999999999999999998876
Q ss_pred hhcccccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhhC
Q 018358 300 RGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQ 357 (357)
Q Consensus 300 ~r~~~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yleq 357 (357)
+|++||+|+||++.+.| ||+|+||||++|+|+||++.|+.||++|++|
T Consensus 196 ----------~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 196 ----------QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred ----------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 99999999999999999 7999999999999999999999999999986
No 2
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.6e-41 Score=316.46 Aligned_cols=209 Identities=26% Similarity=0.375 Sum_probs=179.2
Q ss_pred CCcHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCcCCCCCCCc
Q 018358 86 CVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQL 165 (357)
Q Consensus 86 ~~dL~eaAL~IA~~~~p~~~~~~v~ldv~~~~~~Ld~La~~v~~~~~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~y 165 (357)
...+.++++++|+..+| ++|......+++.++..++++ ++....+++++++++++||++|||+||.+ +|
T Consensus 12 ~~~~~e~~l~~a~~~~~-------~~dp~~~~~~l~~lV~~a~~~--i~~~~~~~~~~~~l~~~fy~d~gF~~~~~--~y 80 (269)
T COG2912 12 EAPLKEGALLAAQAIRP-------DLDPARLLNELDRLVRLARKR--ISELLPQEEQLEALLRLFYGDWGFSGDEE--DY 80 (269)
T ss_pred hccchhHHHHHHHHhCc-------CCCHHHHHHHHHHHHHHHHHH--hhhccChhhHHHHHHHHHHHHcCCCCCcc--cc
Confidence 34566779999999999 999999999999999999988 77888889999999999999999999999 99
Q ss_pred CCcccccHHHHHhhccCChHHHHHHHHHHHHHhccc--cccCCCceeec------------cccccccc--------ccc
Q 018358 166 IEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GLIDFDVEISF------------PLDLYSLP--------RGY 223 (357)
Q Consensus 166 ~dp~Ns~L~~VLe~R~GiPIsLaiIylevArRLglp--gv~~f~G~i~~------------p~d~~~l~--------~~~ 223 (357)
++|+|+|+++|+++|+|+|||||+||+++|+++|+| || .|+|++.. |.+|..+. .+.
T Consensus 81 ~~~~n~~l~~Vl~~R~G~pvsLa~vll~ia~~l~lpl~gV-~FP~~flLR~~~~~~~~~idP~ng~~l~~~~l~~~l~~~ 159 (269)
T COG2912 81 FDPRNLYLNQVLQRRQGIPVSLAVVLLEIARRLDLPLYGV-NFPTQLLLRAEVEDEPLLIDPFNGGTLSQHELQEWLKGT 159 (269)
T ss_pred cCchhhhHHHHHHHcCCCcchHHHHHHHHHHHcCCCCCcc-CCccceeEeeccCCCceeeCCCCCCcccHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 65 33332222 44443322 122
Q ss_pred cCCCC-CCCCCCCCCChHHHHHHHHHHHHHhccccccccchhhHHHHHHHhhhhhhccCCCchhhhHhHHHhhhhHhhhc
Q 018358 224 QKQKS-KDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGV 302 (357)
Q Consensus 224 ~~~~~-~~~~~~~~~s~r~IL~RmL~NLK~~y~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ri~~r~ 302 (357)
+.+.. .....+...++++|+.||++|||++|++++
T Consensus 160 ~~~~ael~~~~L~~a~~~~il~rll~~lk~~~~~e~-------------------------------------------- 195 (269)
T COG2912 160 IGPSAELLPEDLKQASNREILSRLLRNLKAALLREL-------------------------------------------- 195 (269)
T ss_pred cCcHhhhhhhhhhhccHHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 22211 122345567999999999999999998876
Q ss_pred ccccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhhC
Q 018358 303 WNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQAQ 357 (357)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yleq 357 (357)
+|++|+.+++|++.|+| ||+|+||||++|+|+||++.|+.||++|++|
T Consensus 196 -------~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 196 -------QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred -------chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 99999999999999999 8999999999999999999999999999986
No 3
>PF13369 Transglut_core2: Transglutaminase-like superfamily
Probab=99.91 E-value=9.5e-25 Score=192.22 Aligned_cols=131 Identities=23% Similarity=0.393 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCcCCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHH
Q 018358 114 DALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSE 193 (357)
Q Consensus 114 ~~~~~~Ld~La~~v~~~~~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~y~dp~Ns~L~~VLe~R~GiPIsLaiIyle 193 (357)
+++.++||+||.++++. ++...+|.+++++|+++||+++||+|+.. +|++|+|++|++||++|+|+||+||+||++
T Consensus 1 ~~~~~~Ld~la~~v~~~--~~~~~~~~~~l~al~~~l~~~~gF~~~~~--~y~~~~n~~l~~vL~~r~G~Pi~L~ily~~ 76 (152)
T PF13369_consen 1 EAVLQRLDALAAQVRQR--LPARASPREKLEALNDVLYQELGFSGNSE--NYYDPENSFLHKVLERRRGIPISLAILYLE 76 (152)
T ss_pred ChHHHHHHHHHHHHHHH--ccccCCHHHHHHHHHHHHHHHcCCCCCcc--ccCChHhhhHHHHHhcCCCCcHHHHHHHHH
Confidence 35789999999999998 77788999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhccc-cccCCCceeec-----------ccc-ccccc--------ccccCCCCCCCCCCCCCChHHHHHHHHH
Q 018358 194 ILKMLRIW-GLIDFDVEISF-----------PLD-LYSLP--------RGYQKQKSKDSDQPHIITVQMLLEEILR 248 (357)
Q Consensus 194 vArRLglp-gv~~f~G~i~~-----------p~d-~~~l~--------~~~~~~~~~~~~~~~~~s~r~IL~RmL~ 248 (357)
||+|+|++ -...|+|+++. |.+ |..+. .....+.......+.++++++|+.||+|
T Consensus 77 va~rlGl~~~~v~~Pgh~l~r~~~~~~~~iDpf~~G~~l~~~~l~~~l~~~~~~~~~~~~~l~p~s~~eil~R~l~ 152 (152)
T PF13369_consen 77 VARRLGLPAEPVNFPGHFLVRVRSDGEFYIDPFNGGRLLSREELERLLSRMGGPAELDPEYLKPASPREILLRMLR 152 (152)
T ss_pred HHHHcCCeEEEEecCCEEEEEEecCCcEEEccCCCCccCCHHHHHHHHHhccCcccCCHHHhCCCCHHHHHHHHhC
Confidence 99999999 44446666554 222 21121 1111111112234567899999999985
No 4
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.37 E-value=6.5e-07 Score=67.68 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=47.3
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+.++|+.|+.++|+++.++| ++..++++|.+++++|+|++|.++|+.+++
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45699999999999999999 789999999999999999999999999986
No 5
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.64 E-value=0.0054 Score=45.15 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=45.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|+++.|+.+.+.++...| ++.-+.-+|.++++.|++.+|+..++..++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56899999999999999999 588899999999999999999999988764
No 6
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.90 E-value=0.014 Score=43.25 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=45.7
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcC-ChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCG-LYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg-~~~~A~~dL~~yle 356 (357)
..|+++.|+.+.++.+.++| ++.-+--+|.++.++| .+.+|+++++..++
T Consensus 15 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 15 QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46799999999999999999 6888999999999999 79999999988764
No 7
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.25 E-value=0.034 Score=40.91 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=43.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|+++.|+...+.++...| ++.-+..+|.+|.+.|++++|.+-|+..+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46799999999999999999 677889999999999999999999876553
No 8
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.35 E-value=0.21 Score=43.14 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=45.3
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|+++.|+.+.++.+.++| ++.-+--+|.++.++|++.+|+..+..-++
T Consensus 70 ~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 70 MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999 788899999999999999999999887653
No 9
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.20 E-value=0.21 Score=48.32 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=45.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|+++.|+.+.++.+.++| ++.-+.-+|.++++.|++++|+++++.+++
T Consensus 110 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67899999999999999999 577789999999999999999999988765
No 10
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.17 E-value=0.078 Score=34.88 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=28.9
Q ss_pred HHHHhccCC-ChhHHHHHhHHHHHcCChHHHHH
Q 018358 318 CERLILLES-DAKELRDYSILLYHCGLYEQSLQ 349 (357)
Q Consensus 318 ~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~ 349 (357)
.++.|.++| ++.-+.-+|.+|...|++++|.+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 578899999 78999999999999999999863
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.07 E-value=0.21 Score=49.89 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=46.1
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+..|+++.|+..+++++.++| ++.-+.-+|.+|+++|+|.+|+..++..++
T Consensus 47 ~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 47 IKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356899999999999999999 677788899999999999999999988764
No 12
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=92.50 E-value=0.32 Score=42.04 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=45.3
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
...|+++.|+.+.++++.++| ++.-+..+|.++...|++.+|+..++.-+
T Consensus 35 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467899999999999999999 67888999999999999999999887654
No 13
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=91.80 E-value=0.029 Score=45.51 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=48.6
Q ss_pred CCCCCHHHHHHHHHHHhhhhcCCcCCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHHHHHHhccc
Q 018358 134 GFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW 201 (357)
Q Consensus 134 ~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~y~dp~Ns~L~~VLe~R~GiPIsLaiIylevArRLglp 201 (357)
....++.+++++|.+++-+...|. + .+..+.......||.+++|.+...+.++..++|.+|||
T Consensus 9 ~~~~~~~~~~~~i~~~v~~~~~y~-~----~~~~~~~~~~~~~l~~~~G~C~~~a~l~~allr~~Gip 71 (113)
T PF01841_consen 9 ANSKTPLEKAKAIYDWVRSNIRYD-D----PNYSPGPRDASEVLRSGRGDCEDYASLFVALLRALGIP 71 (113)
T ss_dssp TTSHCHHCCCCCCCCCCCCCCCEC------TCCCCCCTTHHHHHHCEEESHHHHHHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhCcEEe-C----CCCCCCCCCHHHHHHcCCCccHHHHHHHHHHHhhCCCc
Confidence 455677778888888777777776 1 33345555599999999999999999999999999999
No 14
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.63 E-value=0.41 Score=49.46 Aligned_cols=50 Identities=14% Similarity=0.043 Sum_probs=44.8
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hh---HHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLESD-AK---ELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd-p~---e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|+++.|+.+.++.|.++|+ +. .+.-+|.+|.++|++++|+++|+..++
T Consensus 87 ~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 87 SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357999999999999999995 53 389999999999999999999998775
No 15
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.42 E-value=0.58 Score=33.65 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=37.6
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..++++.|+.+.++.+.+.| ++.-+...|.++...|++..|...++..+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 46 KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45778888888888888887 56667888888888888888877776554
No 16
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.72 E-value=0.57 Score=46.76 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=46.1
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+..|+++.|+.+.+..+.++| ++..+..+|.+|.++|++.+|+.+++.-++
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356799999999999999999 688889999999999999999999987653
No 17
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.48 E-value=0.71 Score=38.20 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=44.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|++..|+.+.++.+.+.| ++.-+.-+|.++.+.|++..|+..++..++
T Consensus 63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56799999999999999999 578889999999999999999998876553
No 18
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.14 E-value=0.66 Score=40.81 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=45.1
Q ss_pred CcCCHHHHHHHHHHHhccCC-Ch---hHHHHHhHHHHHcCC---------------hHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGL---------------YEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp---~e~RDrGlLl~~lg~---------------~~~A~~dL~~yle 356 (357)
..++++.|+++.||.+.|+| || +-+.=+||.+++.+. ...|..+|+.+++
T Consensus 59 ~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 59 KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 57799999999999999999 64 888999999999987 8899999998875
No 19
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=88.16 E-value=0.43 Score=36.89 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=36.9
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
+.|++++|+.+.++ +..+| ++....-.|..++++|.|++|+.-|+.+
T Consensus 37 ~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 37 QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 56799999999998 66777 4566677799999999999999888753
No 20
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=88.00 E-value=1.3 Score=31.76 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 308 ~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.|+++.|+...+..+.+.| ++.-+..+|.++.+.|.+..|...++..++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999 577789999999999999999998887653
No 21
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=87.83 E-value=0.76 Score=35.45 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHhccCC-Ch--hHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 308 FGDMRCALAACERLILLES-DA--KELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 308 ~~d~~~AL~a~ErlllL~P-dp--~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
.|+++.|+...|+++...| ++ .-+.-.|.+|++.|.|+.|+..++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4699999999999999999 53 3344489999999999999988854
No 22
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=87.11 E-value=1.4 Score=36.39 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=45.5
Q ss_pred ccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 305 SVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 305 ~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
.+..|+++.|+...+.++.++| ++..+.-+|.++++.|++.+|...++..+
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999 68888999999999999999999887654
No 23
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=86.94 E-value=3.6 Score=34.88 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=42.1
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+..+++++.++| |-.-++-.=.+|+..|++.+|+.-.+.|.
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56799999999999999999 77788999999999999999999888775
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=86.45 E-value=2.1 Score=37.21 Aligned_cols=48 Identities=27% Similarity=0.414 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 308 FGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 308 ~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
.|+++.|....++.+...| ++..+...|.++++.|.+.+|...++.++
T Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 148 AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555555 34444555555555555555555555443
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=86.39 E-value=1.5 Score=46.23 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=36.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+.+.++.+.++| ++.-+.-+|.++.+.|++++|+..++.-+
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56677778888888888887 46666777888888888887777776544
No 26
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.80 E-value=0.62 Score=44.23 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=46.5
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|+++.|+.+-+-.+.|+| ..|..+.||+-+|.-|+|+.|.+|+..|-.
T Consensus 111 ~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred hcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 68999999999999999999 579999999999999999999999987743
No 27
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=85.03 E-value=1.7 Score=41.81 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=44.3
Q ss_pred cccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHH
Q 018358 304 NSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 304 ~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
+.++.|++..|+....+...+.| |+.-+=+.|..|.++|++.+|...+.
T Consensus 109 ~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred HHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 34589999999999999999999 89999999999999999999976654
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=84.97 E-value=2.3 Score=41.03 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=45.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+.|+++.|+...+..+.++| ++..+.-+|.++.+.|++++|.+.++.-++
T Consensus 76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56799999999999999999 688899999999999999999999887653
No 29
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=84.94 E-value=2.3 Score=38.78 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 311 MRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 311 ~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.+.|..+.++.+.++| ++.-+--.|+.+++.|+|++|+..++..++
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6999999999999999 788899999999999999999999887654
No 30
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=3.3 Score=42.18 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=44.8
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
+.-+++..|+..|+..|.++| +...+.=||..+..+|.|+.|..|++.-+
T Consensus 268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 355699999999999999999 67888889999999999999999998655
No 31
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=84.14 E-value=2.9 Score=33.05 Aligned_cols=52 Identities=15% Similarity=0.015 Sum_probs=41.7
Q ss_pred ccCcCCHHHHHHHHHHHhccCCC-h---hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 305 SVRFGDMRCALAACERLILLESD-A---KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 305 ~lr~~d~~~AL~a~ErlllL~Pd-p---~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
....|+++.|+...+.++...|+ + .-+--.|.++.+.|.+.+|...++..++
T Consensus 49 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 49 YYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34778899999999999988883 3 4467788889999999999988887764
No 32
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=82.92 E-value=5.4 Score=29.85 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHhccC----C-Ch---hHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 308 FGDMRCALAACERLILLE----S-DA---KELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 308 ~~d~~~AL~a~ErlllL~----P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
.|+++.|+...+..+.+. + +| .-+...|.++..+|++++|++.++.-+
T Consensus 18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 458999999888887552 2 23 235899999999999999999887654
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.87 E-value=2.6 Score=41.40 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=36.6
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..++|+.|+...+..|.|+| ++--.=-|+-.|-++|.|..|++|.+.-+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL 142 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35688888888888888888 66555667777888888888888877654
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.49 E-value=2.3 Score=45.53 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=45.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
+-|+.+.||...|+.+.|+| +|.-+-.+|.+++-+++|.+|++.||.-
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 67899999999999999999 9999999999999999999999999864
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=82.34 E-value=3.8 Score=35.55 Aligned_cols=49 Identities=24% Similarity=0.431 Sum_probs=39.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+...++.+.+.| ++..+.-.|.++.+.|.+.+|...++..+
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 67888888888888888888 56667788888888888888888777654
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=82.08 E-value=4.6 Score=31.89 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=41.6
Q ss_pred cCcCCHHHHHHHHHHHhccCC-Ch---hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.+.|+++.|....+.++...| ++ .-...+|.++++.|.+..|...++.++.
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 356799999999999998888 43 4567799999999999999998887764
No 37
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=81.59 E-value=4.3 Score=35.38 Aligned_cols=48 Identities=21% Similarity=0.152 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHHhccCCCh----hHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 308 FGDMRCALAACERLILLESDA----KELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 308 ~~d~~~AL~a~ErlllL~Pdp----~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
.|+++.|+...++.+.+.|++ .-+...|+++.+.|++++|...++..+
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457788888888887776642 346777888888888888877776543
No 38
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=81.03 E-value=3.7 Score=39.63 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=25.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-Chh----HHHHHhHHHHHcCChHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAK----ELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~----e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
..|+++.|....++.+.+.| ++. -+.-.|.++...|++++|...++.
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566666666666665554 221 123456666666666666655554
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=80.67 E-value=3.2 Score=41.86 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=47.4
Q ss_pred ccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 305 SVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 305 ~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.+..|+++.|+...++++...| +|.-++=.|.++.+.|+|++|.+.|+.+.+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3478999999999999999999 788899999999999999999999988764
No 40
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=80.60 E-value=4.2 Score=37.03 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=44.3
Q ss_pred cCcCCHHHHHHHHHHHhccCC-Ch---hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
...|+++.|+...++++...| +| ..+...|.++++.|.+.+|...++.+++
T Consensus 44 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 44 LDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 356799999999999999999 55 3458899999999999999999998775
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=80.31 E-value=3.6 Score=43.32 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=35.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+...++.+.++| ++.-....+.+++..|++++|+..++..+
T Consensus 384 ~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 384 MAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 56788888888888888888 44444556667777888888877766554
No 42
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.24 E-value=3.8 Score=25.50 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=23.0
Q ss_pred hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 329 KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 329 ~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.-+..+|.+++++|.|.+|+..++.-++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4568899999999999999999887653
No 43
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=79.84 E-value=4 Score=43.34 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=27.5
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
..|+++.|+.+.+..+.++| ++.-+.-+|.+++..|++.+|+.+++.-
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556666666666666655 4555555566666666666665555543
No 44
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=79.58 E-value=1.9 Score=29.37 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSI 336 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGl 336 (357)
+.|++++|..+.++.+.++| |+.-++-.|.
T Consensus 13 ~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 13 RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 67899999999999999999 6776665553
No 45
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=79.22 E-value=4.8 Score=38.08 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=44.9
Q ss_pred cCcCCHHHHHHHHHHHhccCCC-hhH---HHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLESD-AKE---LRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~Pd-p~e---~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+..|+++.|....+.++...|+ +.. ..+.|.++++.+.|..|+..++.|++
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4578999999999999999994 433 37999999999999999999999986
No 46
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=78.14 E-value=5.1 Score=35.15 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=26.1
Q ss_pred CcCCHHHHHHHHHHHhccCCCh----hHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESDA----KELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pdp----~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
..|+++.|+.+.+..+.+.|++ ..+...|.++.+.|.++.|+..++.
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456666666666666555431 2345666666666666666555443
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=77.95 E-value=5.9 Score=36.13 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=42.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHH-HHHcCC--hHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSIL-LYHCGL--YEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlL-l~~lg~--~~~A~~dL~~yle 356 (357)
..|+++.|+.+.++.+.+.| ++.-+-.+|.+ +++.|. +.+|.+-|+..++
T Consensus 85 ~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 85 WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 78999999999999999999 67778899986 478788 5899988887664
No 48
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=76.12 E-value=5.9 Score=42.11 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=40.9
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
..|+++.|+..++..+.++|+ ..-+.-+|.+|.++|.|++|+.|++..
T Consensus 172 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 172 ALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 568999999999999999994 566666999999999999999988654
No 49
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=75.79 E-value=6 Score=41.95 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=29.6
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+...++.+...| +|.-+.-+|.++.+.|+|++|...|+..+
T Consensus 34 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 34 QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKAL 83 (899)
T ss_pred HcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666666666666666 45555666666666666666666655443
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=75.04 E-value=6.1 Score=45.45 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=45.1
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|+++.|+.+.++.+.++| ++..+..+|.+|.+.|++.+|...++..++
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999999999999 577789999999999999999999887764
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=74.77 E-value=6.6 Score=39.60 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=35.5
Q ss_pred cCcCCHHHHHHHHHHHhccCC-Ch--hHHHHHhHHHHHcCChHHHHHHHH
Q 018358 306 VRFGDMRCALAACERLILLES-DA--KELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp--~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
+.+++...++..+|+.+...| +| .-+.=+|.++++.|+|+.|.+.|+
T Consensus 310 l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 310 LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 345677778888888888888 56 555667888888888888888777
No 52
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.35 E-value=7.7 Score=37.31 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=24.0
Q ss_pred CcCCHHHHHHHHHHHhccCC-C---hhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-D---AKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-d---p~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+...++++...| + +.-+.-.|.++..+|.+..|...++..+
T Consensus 192 ~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 192 NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555544 2 2333444555555555555555554443
No 53
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.30 E-value=7 Score=24.53 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=22.3
Q ss_pred HHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 330 ELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 330 e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.+--+|.+++++|.+++|+.+++.-++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456799999999999999999987654
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=74.14 E-value=5.9 Score=43.39 Aligned_cols=47 Identities=19% Similarity=0.024 Sum_probs=23.6
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
+.++++.|+..+|+++..+| ++..+--+|+++.++|+|++|..-++.
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44455555555555555555 244445555555555555555544443
No 55
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=73.57 E-value=7.2 Score=42.13 Aligned_cols=47 Identities=11% Similarity=-0.070 Sum_probs=25.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
..|+++.|+.+.++.+.++| ++..+..+|.++.+.|.+++|+..+..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 44555555555555555555 344445555555555555555555443
No 56
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=73.42 E-value=6.4 Score=45.31 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=47.1
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+..|+++.|+...++.+.++| ++..+.-.|.++++.|++++|...++..++
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468999999999999999999 788899999999999999999999988764
No 57
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=73.23 E-value=8.7 Score=33.42 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=39.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHH-------HcCChHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLY-------HCGLYEQSLQYLK 352 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~-------~lg~~~~A~~dL~ 352 (357)
..|+++.|+.+.++.+.+.| .+..+..+|.++. .+|++.+|+.++.
T Consensus 84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 67899999999999999999 4666788888888 8889998877765
No 58
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=73.07 E-value=10 Score=33.89 Aligned_cols=48 Identities=13% Similarity=-0.001 Sum_probs=41.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
..|+++.|+.+.++.+.|+| ||.-.--.|..+..+|....|.+-++.=
T Consensus 81 ~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56799999999999999999 6888888999999999999998877643
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.95 E-value=7.3 Score=42.67 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=30.6
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|..+.++++.-+|+ +.-+--+|.++...|..++|...++.=+
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666665563 4556666666666666666666655433
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=71.47 E-value=7.8 Score=39.01 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=44.1
Q ss_pred ccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 305 SVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 305 ~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
.+..|+++.|+...++++...| +|.-++-.+.+|.+.|+|++|+.-|...
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l 213 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM 213 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3478999999999999999999 6888999999999999999999655543
No 61
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=71.30 E-value=8.6 Score=41.57 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=23.1
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+...++++...|+ +.-..-.|.++.+.|++++|+..++..+
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555552 2222233455555555555555554433
No 62
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=70.87 E-value=8.7 Score=43.76 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=36.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+.+.++.+.++| ++.-+.-+|+++.++|++.+|+..++.-+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46677777777777777777 56667777777777777777777776543
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=69.47 E-value=5.2 Score=37.71 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=40.2
Q ss_pred cccccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 302 VWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 302 ~~~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
+|..+..|+...+..+++.+..-.| +|.-+--.|.++.++|++..|+..++..+
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 3566678888888888888777766 67767778888888888888888877654
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=69.25 E-value=13 Score=37.46 Aligned_cols=49 Identities=8% Similarity=-0.001 Sum_probs=33.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..++.+.++..+|..+.-.| ||..+.=.|.++.+.|.|+.|...|+.-+
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44677777777777777777 45556677777777777777777666544
No 65
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=68.61 E-value=11 Score=40.00 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=26.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+ ..|+...++++.+.| ++..+.-+|.++++.|++.+|...++..+
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444 445666666555555 34445555555556666666555555443
No 66
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=68.42 E-value=11 Score=43.05 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHhccCCChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 309 GDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 309 ~d~~~AL~a~ErlllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
|+++.|+.+.++.+.++|++..+..+|.++.++|++.+|...++.
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555555555555544445555555555555555555443
No 67
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=68.39 E-value=13 Score=36.28 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=33.3
Q ss_pred CcCCHHHHHHHHHHHhccCC-Ch----hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DA----KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp----~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+.|+++.|+...+.++...+ ++ .-+...|.+|++.|.+..|...++..++
T Consensus 81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 67777777777777776543 22 2245667777777777777777766543
No 68
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=67.96 E-value=14 Score=32.57 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=45.6
Q ss_pred cCcCCHHHHHHHHHHHhccCC-Ch---hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
++.|+|..|....|.|..=.| .+ .-..|.|..||..|.|.+|+..++.|++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567899999999999999888 44 5569999999999999999999999985
No 69
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=67.93 E-value=11 Score=41.50 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=37.9
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+..|+++.|+.+.+.++...| ++. +...|.++.+.|.+.+|+..++..++
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788888888888888888 566 77778888888888888877776553
No 70
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.66 E-value=4.5 Score=24.88 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=22.9
Q ss_pred HHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 331 LRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 331 ~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+--.|.++++.|.+.+|+..++.+++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34579999999999999999999876
No 71
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=67.64 E-value=9.4 Score=39.83 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=43.7
Q ss_pred CcCCHHHHHHHHHHHhccCCChhHHHHHhHHHHHcCChHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
-.|+++.+.-.++=+..+.|.|..+|-.|+.++.-.+|.+|+..|.
T Consensus 474 sqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred hcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999875
No 72
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=67.37 E-value=5.3 Score=37.68 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=29.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
.-|+.+.|+...++++..+| ||.-+.-+|-++.+.|++++|++-....
T Consensus 226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56799999999999999999 8999999999999999999998765543
No 73
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=66.10 E-value=17 Score=31.72 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=34.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCCh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLY 344 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~ 344 (357)
+.|+++.|+.+.+..+.+.| ++..+..+|.++.+.|..
T Consensus 84 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 84 SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence 67899999999999999999 677788999999998873
No 74
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=66.00 E-value=14 Score=35.95 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=32.5
Q ss_pred CcCCHHHHHHHHHHHhccCCC--hhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLESD--AKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd--p~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+...++++...|+ +..+.-.+.+|.+.|.+++|...++..+
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567777777777777776663 2334556677777777777777666554
No 75
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=65.76 E-value=11 Score=38.53 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=43.6
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
+..++++.|+.++.+.+.+.| +-.-|--.+.+|.++|+|+.|+.-|..+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 367899999999999999999 5577888999999999999999888653
No 76
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=64.75 E-value=4 Score=29.88 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=24.9
Q ss_pred HHhhccCChHHHHHHHHHHHHHhccc
Q 018358 176 VLTHRTGSAVMLSLIYSEILKMLRIW 201 (357)
Q Consensus 176 VLe~R~GiPIsLaiIylevArRLglp 201 (357)
||++|.|.+-..+.++..++|.+|+|
T Consensus 1 ~~~~~~G~C~~~a~l~~~llr~~GIp 26 (68)
T smart00460 1 LLKTKYGTCGEFAALFVALLRSLGIP 26 (68)
T ss_pred CCcccceeeHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999999
No 77
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=64.34 E-value=12 Score=25.30 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=25.3
Q ss_pred hhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 328 AKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 328 p~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
|.-+..+|.+|.++|++++|.+-|+..++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677899999999999999999998775
No 78
>PLN02789 farnesyltranstransferase
Probab=63.29 E-value=14 Score=36.49 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCCh--HHHHHHH
Q 018358 310 DMRCALAACERLILLES-DAKELRDYSILLYHCGLY--EQSLQYL 351 (357)
Q Consensus 310 d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~--~~A~~dL 351 (357)
+++.+|..++.++..+| +...|--||.++.++|.. .+++..+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 56677777777777777 344556667777666653 3444443
No 79
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=63.11 E-value=13 Score=33.71 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=42.4
Q ss_pred cCcCCHHHHHHHHHHHhccCC-Ch---hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+..|++..|....+.++.-.| .+ ...-..|..++..|.|..|...++.|++
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999988 43 5568999999999999999999999985
No 80
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=62.77 E-value=18 Score=32.40 Aligned_cols=47 Identities=4% Similarity=-0.079 Sum_probs=43.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
..|+++.|...-+.+..++| ++.=+--.|+++..+|.|++|+.-.+.
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~ 94 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGR 94 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 67899999999999999999 677789999999999999999987765
No 81
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=62.66 E-value=16 Score=40.09 Aligned_cols=49 Identities=12% Similarity=-0.079 Sum_probs=40.1
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|+.+.++.+.++| ++..+..+|+++...|.|++|.+.++..+
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 67788888888888888888 46777888888888888888888877655
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.23 E-value=17 Score=38.33 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=38.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|||+.|+....-.+..+| |+-..=-|+..|-.+|.+..|+.|.+.+++
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 56688888877777778888 677777788888888888888887777664
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=59.12 E-value=14 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=25.5
Q ss_pred hhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 328 AKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 328 p~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+..+..+|..+++.|+|.+|+..++.-++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56789999999999999999999987653
No 84
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=58.97 E-value=20 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 331 LRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 331 ~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+--+|.++.++|.++.|...++..++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45789999999999999999987664
No 85
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.86 E-value=20 Score=33.93 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=43.2
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+..+.|+.|+..|-..+.|.| ....+--|+-+|-++..|++|+.|+..-+|
T Consensus 145 iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 145 IKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 355699999999999999999 445555579999999999999999987665
No 86
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.63 E-value=27 Score=27.97 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 314 ALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 314 AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.+...+.-+.-+| |+..+.+.+..+...|++++|++-|-..+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3556677778899 788999999999999999999998876553
No 87
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=57.04 E-value=23 Score=34.16 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=47.8
Q ss_pred ccccCcCCHHHHHHHHHHHhccCC-Ch---hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 303 WNSVRFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErlllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.+.++.|+|..|..-.|.+..-.| .| .-.-|.+..+|+.+.|.+|+..++.|+.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 356789999999999999999999 65 4458999999999999999999999985
No 88
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=56.83 E-value=14 Score=38.24 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=49.7
Q ss_pred HhhhcccccCcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 298 LERGVWNSVRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 298 i~~r~~~~lr~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
...|-..++|-|+.+.|+..|++.+.|+|. -..+--||..+.-++.|++|++|++...+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566788999999999999999999995 45556688999999999999999987653
No 89
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=56.11 E-value=5.6 Score=25.95 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=18.7
Q ss_pred CcCCHHHHHHHHHHHhccCCChhHHH
Q 018358 307 RFGDMRCALAACERLILLESDAKELR 332 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pdp~e~R 332 (357)
+.|+|++|+.+.++.|.+..++.+.|
T Consensus 11 ~~g~~~~Ai~~y~~aL~l~~~~~~~~ 36 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALALARDPEDRR 36 (36)
T ss_dssp HCT-HHHHHHHHHHHHHHHHHCT-H-
T ss_pred HcCCHHHHHHHHHHHHHhcccccCCC
Confidence 35699999999999988877665543
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=54.91 E-value=30 Score=31.31 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=42.8
Q ss_pred cCcCCHHHHHHHHHHHhccCC-Ch---hHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 306 VRFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
.+.|+++.|+...+..+...| +| ..+.-+|.++.++|.+.+|...++...
T Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356899999999999999988 44 567899999999999999998877543
No 91
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]
Probab=53.98 E-value=55 Score=30.64 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhchhcCCCCCCHHHHHHHHHHHhhhhcCCcCCCCCCCcCCcccccHHHHHhhccCChHHHHHHHHHHHHH
Q 018358 118 SQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKM 197 (357)
Q Consensus 118 ~~Ld~La~~v~~~~~~~~~~~p~~~l~~Ln~~Ly~~~GF~g~~~~~~y~dp~Ns~L~~VLe~R~GiPIsLaiIylevArR 197 (357)
..+.+++.+. ......+.+++..+..+++...-|.... .+...--..+|+.++|.+-=.+.+++.++|.
T Consensus 142 ~~~~~la~~~-----~~~~~~~~~~~~~~~~~~~~~~~y~~~~------~~~~~~~~~~l~~~~G~C~d~a~l~val~Ra 210 (319)
T COG1305 142 PRVAELAARE-----TGGATTPREKAAALFDYVNSKIRYSPGP------TPVTGSASDALRLGRGVCRDFAHLLVALLRA 210 (319)
T ss_pred HHHHHHHHHh-----hcccCCHHHHHHHHHHHHhhcceeecCC------CCCCCCHHHHHHhCCcccccHHHHHHHHHHH
Confidence 3445555542 3345778889999999888555554432 2333445689999999999999999999999
Q ss_pred hccc
Q 018358 198 LRIW 201 (357)
Q Consensus 198 Lglp 201 (357)
+|||
T Consensus 211 ~GIp 214 (319)
T COG1305 211 AGIP 214 (319)
T ss_pred cCCc
Confidence 9999
No 92
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=53.56 E-value=31 Score=36.52 Aligned_cols=47 Identities=15% Similarity=-0.076 Sum_probs=40.5
Q ss_pred CcCCHHHHHHHHHHHhccCCChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
..|+++.|.+..++.+.|+|+..-+--+|.++...|++++|.+.++.
T Consensus 432 ~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56899999999999999999776778889999999999999887754
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.31 E-value=26 Score=33.54 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=47.8
Q ss_pred cccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 304 NSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 304 ~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
-.++.|+...|-...+|.|.++| .|.-+-+..-+++.-|+|-.|...++.|.
T Consensus 148 Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 34589999999999999999999 58999999999999999999999999885
No 94
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.17 E-value=25 Score=34.70 Aligned_cols=46 Identities=20% Similarity=0.451 Sum_probs=40.4
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
+-|.++.|+..||..|.++|+ ...+-=.|++|+-+|.|.+|++.++
T Consensus 127 ~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 127 KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 346899999999999999995 6777779999999999999998844
No 95
>PLN02789 farnesyltranstransferase
Probab=52.13 E-value=28 Score=34.38 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=25.8
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHc
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHC 341 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~l 341 (357)
..|+++.||.+++++|..+| +..-|--||.++.++
T Consensus 154 ~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 154 TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 55677777777777777777 556677777777776
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=52.11 E-value=27 Score=39.17 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=32.6
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
.|.||+..|+...+..+..+| ++..+.|...++...|.+.+|+..++.++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 466677777777777777777 44444466666666677777766666654
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=50.17 E-value=19 Score=36.59 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=49.2
Q ss_pred HhhhcccccCcCCHHHHHHHHHHHhccCCCh-hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 298 LERGVWNSVRFGDMRCALAACERLILLESDA-KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 298 i~~r~~~~lr~~d~~~AL~a~ErlllL~Pdp-~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
|-+|--+-|-.|.-.-||.-.+|.|.|.||- ..+-.||.++.+.|.+++|.+|+..-++
T Consensus 75 ifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 75 IFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQ 134 (504)
T ss_pred HHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHh
Confidence 3344445566778888999999999999984 7788999999999999999999988765
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=50.01 E-value=36 Score=34.77 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=49.8
Q ss_pred hhhcccccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 299 ERGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 299 ~~r~~~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
+.+....++++|.+.-+...|--+...| +|..++-.|+|+++-+.|..|-..|+.=+
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444566799999999999999999999 79889999999999999999999988644
No 99
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=49.70 E-value=31 Score=19.21 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.2
Q ss_pred HHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 331 LRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 331 ~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
+-.+|.++.+.|.++.|+..++.-+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4568999999999999999887655
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=49.07 E-value=39 Score=35.42 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=46.9
Q ss_pred ccCcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 305 SVRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 305 ~lr~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
.++.++...|....++++.+.|+ +-.+--+|-.|.+.|.+.+|+..|..|+
T Consensus 350 ~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 350 LLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred HHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 34899999999999999999995 8888999999999999999999999876
No 101
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.17 E-value=48 Score=29.70 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=42.7
Q ss_pred cCcCCHHHHHHHHHHHhccCCChhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 306 VRFGDMRCALAACERLILLESDAKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~Pdp~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
...+..+..+...++.+...|+|.-.+.++.+++..|+.++|.+-+..+
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455677788899999999999999999999999999999998877654
No 102
>PRK14574 hmsH outer membrane protein; Provisional
Probab=48.04 E-value=36 Score=38.12 Aligned_cols=49 Identities=10% Similarity=-0.039 Sum_probs=39.7
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|++++|+.+.+.++..+| +|..+.-.++++.+.+.+.+|++.++..+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 45788899999999999999 57666666788888899998888877654
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=47.99 E-value=41 Score=35.62 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=42.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
+-|+++.||..+|+.+...| -+...-=.|.+|-|.|.+.+|...++.
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~ 253 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDE 253 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45699999999999999999 577778899999999999999998765
No 104
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.37 E-value=48 Score=31.83 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHHhccCC-C---hhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 308 FGDMRCALAACERLILLES-D---AKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 308 ~~d~~~AL~a~ErlllL~P-d---p~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.|+++.|+.+.+..+...| + |.-+.-.|.+|+..|.|.+|+..++.+++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4699999999999999999 5 46789999999999999999999998874
No 105
>PRK11906 transcriptional regulator; Provisional
Probab=46.94 E-value=44 Score=34.90 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 310 DMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 310 d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
+++.|....||.+.|+| .+.-+--+|++++..|+.++|.+.++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 47778888888888888 46777778888888888888877776543
No 106
>PRK11906 transcriptional regulator; Provisional
Probab=46.34 E-value=38 Score=35.39 Aligned_cols=50 Identities=14% Similarity=-0.030 Sum_probs=45.6
Q ss_pred ccccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 303 WNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
|.. .+.+...|++..+|.+.++| ||.-+.=.|+++.+.|++..|...|+.
T Consensus 313 ~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~r 363 (458)
T PRK11906 313 KSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQ 363 (458)
T ss_pred CCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 444 78899999999999999999 899999999999999999999988875
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=44.54 E-value=44 Score=35.78 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=42.2
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
+-+.++.|+.+.+..|.+.| ++.-.=-.|++|..+|.++.|++.+.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 56789999999999999999 89888999999999999999988764
No 108
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.52 E-value=27 Score=25.40 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=18.4
Q ss_pred CcCCHHHHHHHHHHHhccCCCh
Q 018358 307 RFGDMRCALAACERLILLESDA 328 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pdp 328 (357)
+-|++..|+..++++|.++|+.
T Consensus 13 kl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 13 KLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HTT-HHHHHHHHHHHHHHTTS-
T ss_pred HhhhHHHHHHHHHHHHhhCCCc
Confidence 5679999999999999999953
No 109
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=44.41 E-value=25 Score=25.20 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.8
Q ss_pred HHhHHHHHcCChHHHHHHHHHHhh
Q 018358 333 DYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 333 DrGlLl~~lg~~~~A~~dL~~yle 356 (357)
++|..+++.|+|.+|+..++..++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~ 25 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK 25 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH
Confidence 579999999999999999998775
No 110
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=41.51 E-value=39 Score=29.91 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=40.2
Q ss_pred CcCCHHHHHHHHHHHhccCCChhHHHHH----hHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLESDAKELRDY----SILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pdp~e~RDr----GlLl~~lg~~~~A~~dL~~yle 356 (357)
.-.|.++-+.+.|-++. .-+|.++||. ++-+|+++.|+.|+.++..+++
T Consensus 47 ~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34488888999998887 4477777774 7788999999999999998886
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=41.10 E-value=42 Score=36.95 Aligned_cols=49 Identities=8% Similarity=-0.055 Sum_probs=46.9
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
+.+|++.+....|+.+.++| .+.-|--+|-+.-|++.++.|++++.+|+
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 67899999999999999999 89999999999999999999999999886
No 112
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=38.30 E-value=58 Score=19.55 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=18.5
Q ss_pred HHHHhHHHHHcCChHHHHHHHH
Q 018358 331 LRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 331 ~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
.-.+|.++.+.|++++|..-++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4567999999999999988764
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=37.98 E-value=64 Score=32.95 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=45.4
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
..|++-.|++.|.+.|-++| |..-+-||+-.|.-...|+.|++|.+.-.|
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 67899999999999999999 478889999999999999999999987654
No 114
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=37.86 E-value=39 Score=36.72 Aligned_cols=43 Identities=26% Similarity=0.277 Sum_probs=37.7
Q ss_pred CcCCHHHHHHHHHHHhccCCCh-hHHHHHhHHHHHcCChHHHHH
Q 018358 307 RFGDMRCALAACERLILLESDA-KELRDYSILLYHCGLYEQSLQ 349 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pdp-~e~RDrGlLl~~lg~~~~A~~ 349 (357)
.-.++..|+.|....|.+.||+ ..+||.++|..|+|.|...+.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 3559999999999999999976 667999999999999987643
No 115
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=37.24 E-value=1.2e+02 Score=25.61 Aligned_cols=47 Identities=28% Similarity=0.319 Sum_probs=37.8
Q ss_pred CcCCHHHHHHHHHHHhccCCC---hhHHHH-HhHHHHHcCChHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESD---AKELRD-YSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd---p~e~RD-rGlLl~~lg~~~~A~~dL~~ 353 (357)
.-|+++.|+...+..+.-.|+ ...++- +++.++..|++.+|+..+-.
T Consensus 50 ~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 50 NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 678999999999999887784 355563 37889999999999887743
No 116
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=36.79 E-value=94 Score=26.25 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHhccCC-Ch---hHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 308 FGDMRCALAACERLILLES-DA---KELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 308 ~~d~~~AL~a~ErlllL~P-dp---~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.|+.++|+...++.+.... ++ .-+=.+|-.|-++|++++|+.-|+.-++
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3488889998888888765 33 3346789999999999999888876543
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=36.61 E-value=50 Score=37.10 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=53.0
Q ss_pred hhhHhhhcccccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 295 RHRLERGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 295 ~~ri~~r~~~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
.-|.++.+|.++..+++..||+-++.++.=.| .++.+=--|+.++++|.+.+|..-|+.
T Consensus 9 ~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~ 68 (932)
T KOG2053|consen 9 SERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEA 68 (932)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh
Confidence 34677888999999999999999999999999 589988899999999999999977764
No 118
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=34.55 E-value=54 Score=34.22 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=27.9
Q ss_pred cCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 324 LES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 324 L~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
-+| ++..+..+|..|+++|+|++|++.++.=+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL 102 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETAL 102 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467 68889999999999999999999987644
No 119
>PRK10941 hypothetical protein; Provisional
Probab=34.30 E-value=6.8 Score=37.92 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=17.9
Q ss_pred hhhHhHHHhhhh-HhhhcccccCc
Q 018358 286 LQLASAKAARHR-LERGVWNSVRF 308 (357)
Q Consensus 286 ~~~~~l~~a~~r-i~~r~~~~lr~ 308 (357)
+.++.+++|.+| |+.||++|++.
T Consensus 166 l~~~~L~~a~~~~il~Rml~nLK~ 189 (269)
T PRK10941 166 LFNEDLDEADNIEVIRKLLDTLKA 189 (269)
T ss_pred CCHHHcCCCCHHHHHHHHHHHHHH
Confidence 446689999999 88888877653
No 120
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.18 E-value=1.1e+02 Score=25.74 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=26.0
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
..|+++.|+...+.. .-.+ .+.-.--+|-+|...|++.+|...++
T Consensus 97 ~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 97 QQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566777777666551 1111 24444556777777777777766543
No 121
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.79 E-value=1.1e+02 Score=30.05 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=44.7
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
.+.+-..+-......+.++| ++.-+-=.|+-+++-|+|.+|+...+.+++
T Consensus 205 ~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 205 GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66688889999999999999 788889999999999999999999988764
No 122
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=33.31 E-value=69 Score=20.26 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=18.2
Q ss_pred HHHhHHHHHcCChHHHHHHHHHHh
Q 018358 332 RDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 332 RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
-..|.+|...|++++|...++.-+
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHH
Confidence 467889999999999988776543
No 123
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.18 E-value=66 Score=33.90 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=49.9
Q ss_pred Hhhhccccc-----CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 298 LERGVWNSV-----RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 298 i~~r~~~~l-----r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
=..|||+.+ .-+.++.|..|--|.+++.- .-..+--.|-||-+++.+.+|++..+.|++
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456788887 56799999999999999886 455667789999999999999999999986
No 124
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.81 E-value=81 Score=33.55 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=39.0
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
+..||...|-+-+--.|.-.| +|..+--++.+.-|+|.|+.|.++++.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~ 348 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISD 348 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhc
Confidence 456777766665656666678 899999999999999999999999864
No 125
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=30.89 E-value=76 Score=23.41 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=22.1
Q ss_pred HHHHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 330 ELRDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 330 e~RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
-....|.+|.+.|+|++|+..++..++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 347899999999999999999887653
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=30.64 E-value=1.1e+02 Score=28.79 Aligned_cols=51 Identities=16% Similarity=0.056 Sum_probs=39.7
Q ss_pred cCcCCHHHHHHHHHHHhccCC-Ch---hHHHHHhHHHHHcCC------------------hHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLES-DA---KELRDYSILLYHCGL------------------YEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp---~e~RDrGlLl~~lg~------------------~~~A~~dL~~yle 356 (357)
.+.++++.|+...|+.+.+.| +| +-..-+|+.+++++. -..|+..|+.|++
T Consensus 80 y~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~ 152 (243)
T PRK10866 80 YKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR 152 (243)
T ss_pred HhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999 54 556778887766651 2467788888875
No 127
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.29 E-value=91 Score=24.67 Aligned_cols=53 Identities=32% Similarity=0.309 Sum_probs=40.8
Q ss_pred ccccCcCCHHHHHHHHHHHhccCC-C---------hhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 303 WNSVRFGDMRCALAACERLILLES-D---------AKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErlllL~P-d---------p~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..+++.||+..|+....+..-... . .+..--.|.++...|++++|+..|+.-+
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345678899999888888877664 1 1344668889999999999999887654
No 128
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=29.24 E-value=1.8e+02 Score=30.87 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=48.3
Q ss_pred chhhhHhHHHhhhhHhhhcccccCcCCHHHHHHHHHHHhcc--CC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 284 SGLQLASAKAARHRLERGVWNSVRFGDMRCALAACERLILL--ES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 284 ~~~~~~~l~~a~~ri~~r~~~~lr~~d~~~AL~a~ErlllL--~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
+++..+.+.-+.-...+..|.....++++.+..+.++.+.+ +| +|.-..-.|+++...|++++|.+.|+.=+
T Consensus 373 P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl 447 (517)
T PRK10153 373 PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI 447 (517)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44444433323322333446555566788999999987775 45 56555668999999999999999988644
No 129
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.89 E-value=1.1e+02 Score=27.32 Aligned_cols=53 Identities=25% Similarity=0.171 Sum_probs=42.7
Q ss_pred ccccCcCCHHHHHHHHHHHhccCCChhH-HHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 303 WNSVRFGDMRCALAACERLILLESDAKE-LRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErlllL~Pdp~e-~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
+..++.++...+-...+.|-.|.|...| .==-|.++.+.|+|.+|+.-|..-.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 4556778999999999999999996444 4556999999999999999887543
No 130
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=28.48 E-value=1.1e+02 Score=31.31 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=46.9
Q ss_pred hhcccccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 300 RGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 300 ~r~~~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
.|.--.+..||++-|..-++.++.+.| +|.-+|-.-..|.+.|.|.+...-|...
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344445688999999999999999999 6788899999999999999998777654
No 131
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.18 E-value=95 Score=33.29 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=37.7
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
...+.+.|+.+..|.|.|.|. ---|.-.|+-+..+|+|.+|+..|-
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 566888888888999988885 5677888999999999998887653
No 132
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.04 E-value=1.5e+02 Score=32.54 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=40.7
Q ss_pred hccccc--CcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 301 GVWNSV--RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 301 r~~~~l--r~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
+++..+ ..|+.+.|+.+.+|.|.+.|+ |...-..|..+-..|...+|++.....+
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 444444 788888888888888888885 6667777777777788887777665443
No 133
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.88 E-value=67 Score=34.10 Aligned_cols=66 Identities=6% Similarity=-0.034 Sum_probs=51.6
Q ss_pred hHHHhhhh-HhhhcccccCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 290 SAKAARHR-LERGVWNSVRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 290 ~l~~a~~r-i~~r~~~~lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
.++++.+- .+.+-.+-+..++-+.....-....-|+| +|.-..-||-+++-++.|++|+.|++..+
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555544 33444555567778888888888899999 78888899999999999999999998765
No 134
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=27.79 E-value=1.4e+02 Score=28.59 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHH
Q 018358 310 DMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 310 d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
+++.|....++.+.+.| ++.-..-.|.++++.|++++|.+.++
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444444444 23334444444444444444444443
No 135
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=26.91 E-value=54 Score=24.15 Aligned_cols=35 Identities=26% Similarity=0.591 Sum_probs=25.2
Q ss_pred CcCcceeEe-eecCCCCcccchhhHHHHHHHhhhcCCChHHHHHHH
Q 018358 18 SKFSRYRVT-CCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAR 62 (357)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ar 62 (357)
.-|.+|++= |+||..+ |+++..+.|+|++.+-+..
T Consensus 17 ~vf~~~gIDfCCgG~~~----------L~eA~~~~~ld~~~vl~~L 52 (56)
T PF04405_consen 17 RVFRKYGIDFCCGGNRS----------LEEACEEKGLDPEEVLEEL 52 (56)
T ss_pred HHHHHcCCcccCCCCch----------HHHHHHHcCCCHHHHHHHH
Confidence 346666665 9999865 8888999999996544443
No 136
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.57 E-value=2.3e+02 Score=29.42 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=45.2
Q ss_pred ccccCCCCCCCCcCcceeEeeecCCCCcccchhhHHHHHHHhhh--cCCChHHHHHHH
Q 018358 7 AAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDS--IGTDTTFAREAR 62 (357)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ar 62 (357)
+.|--+..++.+.|+.-=+.|--++-++-.++|.+..+-.++-. .|++++++.+|.
T Consensus 318 y~wv~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK 375 (472)
T KOG2067|consen 318 YHWVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAK 375 (472)
T ss_pred hHHHHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56777778888889888999998887888889999998888775 557777777766
No 137
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=26.02 E-value=1.6e+02 Score=26.19 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=40.6
Q ss_pred CcCCHHHHHHHHHHHhccCCC-----hhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESD-----AKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd-----p~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
-.|+-+.||.-.++.+.|..+ -...=.||+||-..|+-+.|..|++.-
T Consensus 89 Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 89 LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAA 141 (175)
T ss_pred HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence 477899999999999999863 144578999999999999999999864
No 138
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.28 E-value=1.6e+02 Score=29.87 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=42.6
Q ss_pred cCcCCHHHHHHHHHHHhccCCC-hhHH-HHHhHHHHHcCChHHHHHHHHHHhh
Q 018358 306 VRFGDMRCALAACERLILLESD-AKEL-RDYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~Pd-p~e~-RDrGlLl~~lg~~~~A~~dL~~yle 356 (357)
+..|+++.|..+.|+.+.-+|+ -.|. =-.--.|.|+|...+.+.-|..+.+
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3788999999999999999996 3444 4456788899999999999988875
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.06 E-value=1.7e+02 Score=24.58 Aligned_cols=47 Identities=26% Similarity=0.277 Sum_probs=39.2
Q ss_pred CcCCHHHHHHHHHHHhccCCCh----hHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESDA----KELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pdp----~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
..|+++.|....+..+.-.||+ .-+--.+.++++.|.|.+|+..|+.
T Consensus 60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6789999999999999988764 2234478999999999999998864
No 140
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=22.64 E-value=4.2e+02 Score=24.75 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=25.2
Q ss_pred cCcceeEe-eecCCCCcccchhhHHHHHHHhhhcCCChHHHHHHH
Q 018358 19 KFSRYRVT-CCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAR 62 (357)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ar 62 (357)
-|.+|++= ||||..+ |.++....|+|++.+-...
T Consensus 21 vf~~~~idfCcgG~~~----------l~ea~~~~~i~~~~~~~~l 55 (220)
T PRK10992 21 LFREYDLDFCCGGKQT----------LARAAARKNLDIDVIEARL 55 (220)
T ss_pred HHHHcCCcccCCCCch----------HHHHHHHcCCCHHHHHHHH
Confidence 46777775 9999866 7888899999995444443
No 141
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=22.11 E-value=1.2e+02 Score=21.92 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=19.8
Q ss_pred HHhHHHHHcCChHHHHHHHHHHhh
Q 018358 333 DYSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 333 DrGlLl~~lg~~~~A~~dL~~yle 356 (357)
-.++-++++|.|..|....+..++
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 357889999999999999988774
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=21.71 E-value=2.1e+02 Score=32.71 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHH
Q 018358 310 DMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKF 353 (357)
Q Consensus 310 d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~ 353 (357)
++++|..+-|++|.++| ++.-+.-+|..|... ..+.|.+....
T Consensus 131 ~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 131 ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 99999999999999999 688899999999999 99999776543
No 143
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=21.70 E-value=2.6e+02 Score=25.12 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=38.9
Q ss_pred ccccCcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHHHHH
Q 018358 303 WNSVRFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYLKFY 354 (357)
Q Consensus 303 ~~~lr~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL~~y 354 (357)
+..++.++...+-...+-|-.|.|. +...==-|+++.+.|+|.+|+.-|+.-
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445666888888888888888885 444455688888889999988887753
No 144
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=20.66 E-value=1.5e+02 Score=32.06 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=41.3
Q ss_pred CcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHHHHh
Q 018358 307 RFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
..|+++.|..+.+.++.+.| +..-.--..-+|.+.|++++|.+-++...
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 78899999999999999999 55555566779999999999998877654
No 145
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.61 E-value=2.1e+02 Score=27.57 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=30.7
Q ss_pred cCcCCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHH
Q 018358 306 VRFGDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 306 lr~~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
++.||+..|..-.|..|..+| .+.-+-=++.+|.+.|..+.|-+..+
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yr 93 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYR 93 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 466677777777777777777 35556666667777776666655543
No 146
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.50 E-value=1.6e+02 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=20.8
Q ss_pred HHHhHHHHHcCChHHHHHHHHHHh
Q 018358 332 RDYSILLYHCGLYEQSLQYLKFYQ 355 (357)
Q Consensus 332 RDrGlLl~~lg~~~~A~~dL~~yl 355 (357)
-|.+..|..+|+++.|..-|+--+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 478899999999999999888654
No 147
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.39 E-value=1.5e+02 Score=20.10 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=19.1
Q ss_pred HhHHHHHcCChHHHHHHHHHHhh
Q 018358 334 YSILLYHCGLYEQSLQYLKFYQA 356 (357)
Q Consensus 334 rGlLl~~lg~~~~A~~dL~~yle 356 (357)
.|-+-...+.|.+|++|++..++
T Consensus 7 Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 7 LGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 46667788999999999998774
No 148
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.34 E-value=1.8e+02 Score=32.06 Aligned_cols=45 Identities=9% Similarity=0.248 Sum_probs=26.5
Q ss_pred CcCCHHHHHHHHHHHhccCCC-hhHHHHHhHHHHHcCChHHHHHHH
Q 018358 307 RFGDMRCALAACERLILLESD-AKELRDYSILLYHCGLYEQSLQYL 351 (357)
Q Consensus 307 r~~d~~~AL~a~ErlllL~Pd-p~e~RDrGlLl~~lg~~~~A~~dL 351 (357)
..|+..+|+.-.|-.+.|+|+ +...-..|-+|-.++.|+.|+...
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 455666666666666666664 455556666666666666665443
No 149
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=20.31 E-value=1.6e+02 Score=33.23 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhccCC-ChhHHHHHhHHHHHcCChHHHHHHHH
Q 018358 309 GDMRCALAACERLILLES-DAKELRDYSILLYHCGLYEQSLQYLK 352 (357)
Q Consensus 309 ~d~~~AL~a~ErlllL~P-dp~e~RDrGlLl~~lg~~~~A~~dL~ 352 (357)
|.++.|+.+.+..|.++| +-.-+=-.+-|+.++|.+++|++-|+
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Done!