BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018359
         (357 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T5X|A Chain A, Pcid2:dss1 Structure
          Length = 203

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 61/89 (68%)

Query: 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS 267
           +++    +VTY YY GR  +F+ +F  A++ LS+A  +C+  S+ N RMIL YL+PVK+ 
Sbjct: 6   DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKML 65

Query: 268 IGILPKDWLLEKYNLVEYSNIVQALRRGD 296
           +G +P   LL+KY+L++++ + +A+  G+
Sbjct: 66  LGHMPTVELLKKYHLMQFAEVTRAVSEGN 94


>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex
 pdb|3T5V|E Chain E, Sac3:thp1:sem1 Complex
          Length = 455

 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 166 GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIF-DFEEFPKRDKVTYMYYTGR 224
           G +R+  LYL  +L  IYF++ +  LC ++ ++ +   +   F E+    ++ Y Y  GR
Sbjct: 170 GKQRI-LLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGR 228

Query: 225 LEVFNENFPAADQKLSYA---LINCNPQSEANIR---MILKYLIPVKLSIGILPK 273
             + N     A  + + A   L+N    ++A  R    IL Y+IP  L +G + K
Sbjct: 229 YYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVK 283


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,137,223
Number of Sequences: 62578
Number of extensions: 330520
Number of successful extensions: 705
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 3
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)