Query 018359
Match_columns 357
No_of_seqs 171 out of 467
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_B Nuclear mRNA export pro 100.0 1.8E-67 6.1E-72 531.3 22.5 315 10-332 1-347 (455)
2 3t5x_A PCI domain-containing p 100.0 1.3E-38 4.5E-43 290.1 8.2 146 208-353 6-170 (203)
3 4b4t_S RPN3, 26S proteasome re 100.0 1.8E-30 6.3E-35 263.6 14.0 198 151-353 210-425 (523)
4 3txn_A 26S proteasome regulato 98.7 6.1E-07 2.1E-11 88.8 19.1 227 99-332 59-311 (394)
5 4b4t_O 26S proteasome regulato 98.3 2.3E-06 7.7E-11 84.6 11.2 160 170-332 124-300 (393)
6 4b4t_P 26S proteasome regulato 97.8 5.9E-05 2E-09 75.5 10.4 168 147-317 152-328 (445)
7 4b0z_A RPN12, 26S proteasome r 97.3 0.00036 1.2E-08 63.9 7.3 151 180-332 14-185 (229)
8 4b4t_Q 26S proteasome regulato 97.2 0.0037 1.3E-07 59.6 13.2 167 147-316 150-330 (434)
9 4b4t_R RPN7, 26S proteasome re 97.0 0.0061 2.1E-07 60.4 13.3 177 149-332 148-342 (429)
10 3gw4_A Uncharacterized protein 92.7 2.7 9.1E-05 34.5 13.4 99 147-249 81-180 (203)
11 3nf1_A KLC 1, kinesin light ch 92.6 2.9 9.9E-05 36.6 14.2 148 85-248 122-310 (311)
12 3nf1_A KLC 1, kinesin light ch 92.6 1.7 5.8E-05 38.1 12.6 145 85-248 80-227 (311)
13 3edt_B KLC 2, kinesin light ch 92.2 1.6 5.4E-05 37.5 11.6 144 85-247 54-200 (283)
14 1qqe_A Vesicular transport pro 92.1 4.6 0.00016 36.3 15.2 216 71-309 33-265 (292)
15 3ro3_A PINS homolog, G-protein 91.7 3.7 0.00012 31.6 12.8 97 148-248 65-161 (164)
16 3ulq_A Response regulator aspa 91.0 2.7 9.1E-05 39.1 12.7 173 79-273 108-282 (383)
17 3sf4_A G-protein-signaling mod 90.7 5.9 0.0002 36.1 14.5 123 147-273 242-365 (406)
18 2fbn_A 70 kDa peptidylprolyl i 90.3 7 0.00024 32.5 13.7 95 147-250 53-156 (198)
19 3sz7_A HSC70 cochaperone (SGT) 89.9 4 0.00014 32.9 11.4 89 147-251 26-114 (164)
20 3ro3_A PINS homolog, G-protein 89.5 2 6.9E-05 33.2 8.9 97 148-248 25-121 (164)
21 3qky_A Outer membrane assembly 89.5 5 0.00017 34.9 12.5 145 77-250 18-182 (261)
22 2vyi_A SGTA protein; chaperone 89.4 5.2 0.00018 29.6 11.4 87 148-250 28-114 (131)
23 2lni_A Stress-induced-phosphop 89.2 3.8 0.00013 30.8 10.2 66 176-250 53-118 (133)
24 3q15_A PSP28, response regulat 89.2 2.9 9.9E-05 38.9 11.3 122 148-273 157-279 (378)
25 4ga2_A E3 SUMO-protein ligase 89.1 1.4 4.7E-05 35.8 7.9 64 178-250 36-99 (150)
26 3k9i_A BH0479 protein; putativ 89.1 1.1 3.6E-05 34.5 6.8 68 174-250 28-95 (117)
27 3ma5_A Tetratricopeptide repea 88.8 1.4 4.9E-05 33.0 7.3 63 178-249 12-74 (100)
28 4a1s_A PINS, partner of inscut 88.5 15 0.00051 33.7 15.9 122 148-273 199-321 (411)
29 3hym_B Cell division cycle pro 88.5 5.4 0.00018 35.1 12.1 75 175-250 195-270 (330)
30 3edt_B KLC 2, kinesin light ch 88.3 11 0.00038 32.0 16.7 145 85-245 96-281 (283)
31 2vgx_A Chaperone SYCD; alterna 88.1 2.2 7.5E-05 34.6 8.5 64 177-249 59-122 (148)
32 2xev_A YBGF; tetratricopeptide 87.8 7.2 0.00025 29.4 11.2 94 147-250 17-110 (129)
33 4gco_A Protein STI-1; structur 87.7 1.2 4.2E-05 35.1 6.5 87 147-250 28-115 (126)
34 3q49_B STIP1 homology and U bo 87.4 2.3 7.9E-05 32.7 7.9 86 147-248 24-109 (137)
35 2dba_A Smooth muscle cell asso 87.3 3.7 0.00013 31.6 9.1 91 147-250 43-133 (148)
36 2xcb_A PCRH, regulatory protei 87.0 2.2 7.6E-05 33.8 7.8 63 178-249 57-119 (142)
37 3rkv_A Putative peptidylprolyl 86.9 2.5 8.5E-05 34.1 8.1 68 174-250 64-131 (162)
38 2kc7_A BFR218_protein; tetratr 86.8 2.4 8.1E-05 30.9 7.3 64 179-251 6-70 (99)
39 2l6j_A TPR repeat-containing p 86.7 4 0.00014 29.9 8.6 64 177-249 8-71 (111)
40 2yhc_A BAMD, UPF0169 lipoprote 86.4 14 0.00049 31.4 16.1 63 184-250 107-181 (225)
41 1na3_A Designed protein CTPR2; 86.4 4.8 0.00016 28.2 8.7 65 177-250 13-77 (91)
42 1elw_A TPR1-domain of HOP; HOP 86.3 5.5 0.00019 28.9 9.2 88 147-250 19-106 (118)
43 2kck_A TPR repeat; tetratricop 86.1 2.2 7.4E-05 31.0 6.8 90 147-250 21-111 (112)
44 3sf4_A G-protein-signaling mod 86.0 13 0.00044 33.7 13.5 99 147-249 202-300 (406)
45 3ro2_A PINS homolog, G-protein 86.0 8.9 0.00031 33.3 11.9 97 148-248 199-295 (338)
46 2xev_A YBGF; tetratricopeptide 85.7 2.8 9.4E-05 31.8 7.4 66 179-250 8-73 (129)
47 3uq3_A Heat shock protein STI1 85.5 7.1 0.00024 32.9 10.8 103 147-250 53-173 (258)
48 3gyz_A Chaperone protein IPGC; 85.1 3.3 0.00011 34.2 8.1 90 147-252 51-140 (151)
49 2qfc_A PLCR protein; TPR, HTH, 85.1 3.4 0.00012 37.0 8.8 96 148-247 171-268 (293)
50 3ieg_A DNAJ homolog subfamily 84.8 20 0.00068 31.6 16.0 92 147-250 249-340 (359)
51 1elr_A TPR2A-domain of HOP; HO 84.7 3.4 0.00012 30.8 7.4 92 147-247 19-110 (131)
52 3as5_A MAMA; tetratricopeptide 84.6 12 0.00041 29.4 11.2 87 147-249 57-143 (186)
53 2fo7_A Synthetic consensus TPR 84.4 9.2 0.00031 28.1 9.9 63 177-248 73-135 (136)
54 1hh8_A P67PHOX, NCF-2, neutrop 84.3 4.4 0.00015 33.7 8.7 105 148-260 53-165 (213)
55 2kat_A Uncharacterized protein 84.1 3.3 0.00011 31.2 7.2 65 176-249 22-86 (115)
56 2kck_A TPR repeat; tetratricop 84.1 4 0.00014 29.5 7.4 62 178-248 11-72 (112)
57 1xnf_A Lipoprotein NLPI; TPR, 84.0 7.5 0.00026 33.3 10.3 62 179-249 83-144 (275)
58 2lni_A Stress-induced-phosphop 84.0 5.7 0.00019 29.7 8.5 65 177-250 20-84 (133)
59 2ho1_A Type 4 fimbrial biogene 83.9 8.8 0.0003 32.6 10.7 30 218-247 143-172 (252)
60 1elw_A TPR1-domain of HOP; HOP 83.9 5.5 0.00019 28.9 8.2 64 177-249 8-71 (118)
61 4a1s_A PINS, partner of inscut 83.7 10 0.00035 34.8 11.8 98 147-248 238-335 (411)
62 3u3w_A Transcriptional activat 83.6 2.4 8.1E-05 38.1 7.1 98 147-249 130-229 (293)
63 4b4t_Q 26S proteasome regulato 83.3 5.2 0.00018 37.3 9.6 97 147-247 110-206 (434)
64 3upv_A Heat shock protein STI1 83.2 8.1 0.00028 29.3 9.2 85 147-247 19-103 (126)
65 3q49_B STIP1 homology and U bo 83.2 6.5 0.00022 30.0 8.7 65 177-250 13-77 (137)
66 3q15_A PSP28, response regulat 83.0 24 0.0008 32.5 14.0 97 147-249 197-294 (378)
67 2vyi_A SGTA protein; chaperone 83.0 10 0.00034 27.9 9.5 67 174-249 13-79 (131)
68 3gw4_A Uncharacterized protein 82.9 12 0.0004 30.5 10.7 96 148-248 42-139 (203)
69 1hz4_A MALT regulatory protein 82.7 28 0.00095 31.6 14.4 124 148-273 69-192 (373)
70 2vq2_A PILW, putative fimbrial 82.5 17 0.00059 29.6 11.7 89 148-250 58-147 (225)
71 3ro2_A PINS homolog, G-protein 82.3 24 0.00081 30.5 15.3 121 148-272 159-280 (338)
72 1a17_A Serine/threonine protei 82.2 16 0.00054 28.4 11.5 87 148-250 29-115 (166)
73 4gco_A Protein STI-1; structur 82.0 4.5 0.00015 31.7 7.4 63 178-250 18-81 (126)
74 2xcb_A PCRH, regulatory protei 81.7 7.5 0.00026 30.6 8.7 64 178-250 23-86 (142)
75 1ihg_A Cyclophilin 40; ppiase 81.5 23 0.00077 33.5 13.4 71 171-250 271-341 (370)
76 2ho1_A Type 4 fimbrial biogene 81.1 19 0.00065 30.4 11.7 68 173-249 141-208 (252)
77 3sz7_A HSC70 cochaperone (SGT) 81.0 7.4 0.00025 31.2 8.6 64 177-249 15-78 (164)
78 4i17_A Hypothetical protein; T 80.7 3.5 0.00012 35.0 6.7 71 176-248 79-149 (228)
79 1na0_A Designed protein CTPR3; 80.7 14 0.00048 26.8 11.5 88 147-250 24-111 (125)
80 2xpi_A Anaphase-promoting comp 80.3 7.4 0.00025 38.0 9.8 68 174-250 517-584 (597)
81 2y4t_A DNAJ homolog subfamily 80.2 37 0.0013 31.4 15.2 92 147-250 272-363 (450)
82 3u4t_A TPR repeat-containing p 80.1 22 0.00075 30.3 11.9 91 147-250 18-108 (272)
83 2vq2_A PILW, putative fimbrial 80.1 9.7 0.00033 31.2 9.2 59 177-244 46-105 (225)
84 2vgx_A Chaperone SYCD; alterna 79.5 9.5 0.00032 30.6 8.7 65 177-250 25-89 (148)
85 2qfc_A PLCR protein; TPR, HTH, 79.4 4.7 0.00016 36.1 7.5 96 147-247 130-227 (293)
86 2q7f_A YRRB protein; TPR, prot 79.0 20 0.0007 29.7 11.1 87 147-249 106-192 (243)
87 3uq3_A Heat shock protein STI1 79.0 23 0.0008 29.5 11.5 66 175-249 141-206 (258)
88 3ulq_A Response regulator aspa 78.7 11 0.00036 34.9 9.9 98 147-249 199-297 (383)
89 2xpi_A Anaphase-promoting comp 78.6 44 0.0015 32.2 14.9 94 148-250 457-550 (597)
90 4ga2_A E3 SUMO-protein ligase 78.6 2.9 9.9E-05 33.8 5.3 37 214-250 29-65 (150)
91 1hxi_A PEX5, peroxisome target 78.4 7.2 0.00025 30.2 7.4 63 179-250 23-85 (121)
92 3upv_A Heat shock protein STI1 78.3 11 0.00036 28.6 8.3 64 178-250 9-72 (126)
93 2e2e_A Formate-dependent nitri 78.3 14 0.00047 29.8 9.5 87 148-250 60-149 (177)
94 1elr_A TPR2A-domain of HOP; HO 78.2 7.7 0.00026 28.7 7.4 64 177-249 8-71 (131)
95 3u3w_A Transcriptional activat 78.1 6.1 0.00021 35.3 7.8 96 148-247 171-268 (293)
96 3as5_A MAMA; tetratricopeptide 78.1 8.8 0.0003 30.2 8.1 65 177-250 12-76 (186)
97 3urz_A Uncharacterized protein 78.1 8.3 0.00028 32.7 8.3 67 176-251 57-123 (208)
98 1na0_A Designed protein CTPR3; 77.5 14 0.00049 26.7 8.7 64 177-249 13-76 (125)
99 2dba_A Smooth muscle cell asso 77.4 11 0.00038 28.7 8.3 69 175-249 30-98 (148)
100 3gyz_A Chaperone protein IPGC; 77.4 12 0.00039 30.8 8.7 64 178-250 41-104 (151)
101 3vtx_A MAMA; tetratricopeptide 77.2 2.7 9.4E-05 34.3 4.8 35 215-249 4-38 (184)
102 3vtx_A MAMA; tetratricopeptide 77.1 3.3 0.00011 33.7 5.3 63 177-248 111-173 (184)
103 1p5q_A FKBP52, FK506-binding p 77.1 18 0.00061 33.4 11.0 95 147-250 162-264 (336)
104 3mv2_B Coatomer subunit epsilo 76.9 2.5 8.4E-05 40.0 4.9 115 147-275 115-231 (310)
105 1a17_A Serine/threonine protei 76.6 13 0.00046 28.9 8.7 66 176-250 16-81 (166)
106 3hym_B Cell division cycle pro 76.5 9.1 0.00031 33.6 8.4 94 148-250 209-304 (330)
107 4abn_A Tetratricopeptide repea 76.5 20 0.0007 34.8 11.7 96 146-250 193-292 (474)
108 2fo7_A Synthetic consensus TPR 76.2 20 0.00068 26.1 11.3 64 177-249 39-102 (136)
109 1kt0_A FKBP51, 51 kDa FK506-bi 76.2 22 0.00074 34.5 11.7 95 147-250 283-385 (457)
110 3qky_A Outer membrane assembly 75.8 5.3 0.00018 34.8 6.5 67 178-250 20-86 (261)
111 3u4t_A TPR repeat-containing p 75.5 14 0.0005 31.5 9.3 71 178-251 181-256 (272)
112 4i17_A Hypothetical protein; T 75.5 27 0.00093 29.2 10.9 89 147-250 22-110 (228)
113 4gcn_A Protein STI-1; structur 74.7 7.7 0.00026 30.2 6.7 63 178-250 13-76 (127)
114 1qqe_A Vesicular transport pro 74.4 17 0.00058 32.5 9.8 100 148-250 134-233 (292)
115 3cv0_A Peroxisome targeting si 74.4 26 0.00089 30.4 10.9 89 146-250 152-240 (327)
116 1fch_A Peroxisomal targeting s 74.3 24 0.00082 31.6 10.8 30 218-247 253-282 (368)
117 1fch_A Peroxisomal targeting s 74.2 28 0.00095 31.1 11.2 65 176-249 254-318 (368)
118 2ifu_A Gamma-SNAP; membrane fu 74.0 49 0.0017 29.6 15.2 131 171-307 114-257 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 73.9 7.8 0.00027 32.1 6.9 67 175-250 39-105 (213)
120 4eqf_A PEX5-related protein; a 73.9 12 0.00041 33.9 8.7 91 146-250 191-281 (365)
121 2q7f_A YRRB protein; TPR, prot 73.7 14 0.00049 30.7 8.6 63 178-249 62-124 (243)
122 3ma5_A Tetratricopeptide repea 73.0 6.5 0.00022 29.2 5.6 35 216-250 7-41 (100)
123 3fp2_A TPR repeat-containing p 72.8 18 0.00061 34.4 10.0 60 178-247 248-307 (537)
124 2fbn_A 70 kDa peptidylprolyl i 72.7 26 0.0009 28.8 10.0 74 176-250 41-122 (198)
125 2v5f_A Prolyl 4-hydroxylase su 72.3 3.4 0.00012 31.5 3.8 53 219-271 8-62 (104)
126 2v5f_A Prolyl 4-hydroxylase su 71.4 12 0.00041 28.3 6.9 76 178-255 10-87 (104)
127 1na3_A Designed protein CTPR2; 70.9 7.4 0.00025 27.2 5.3 36 215-250 8-43 (91)
128 3qww_A SET and MYND domain-con 70.8 36 0.0012 33.2 11.8 95 147-245 313-411 (433)
129 3n71_A Histone lysine methyltr 69.7 36 0.0012 33.8 11.7 95 147-245 324-422 (490)
130 2ifu_A Gamma-SNAP; membrane fu 69.7 16 0.00054 32.9 8.4 99 147-250 130-228 (307)
131 1wao_1 Serine/threonine protei 67.8 41 0.0014 32.8 11.5 89 146-250 20-108 (477)
132 4eqf_A PEX5-related protein; a 67.8 6.3 0.00022 35.8 5.3 97 147-250 148-247 (365)
133 3cv0_A Peroxisome targeting si 67.2 44 0.0015 28.9 10.7 85 148-248 188-272 (327)
134 2pl2_A Hypothetical conserved 66.8 27 0.00092 29.5 8.9 64 178-250 10-73 (217)
135 1xnf_A Lipoprotein NLPI; TPR, 66.5 15 0.00051 31.3 7.2 63 178-250 116-178 (275)
136 1p5q_A FKBP52, FK506-binding p 66.3 27 0.00091 32.2 9.4 76 174-250 148-230 (336)
137 3k9i_A BH0479 protein; putativ 65.7 8.3 0.00028 29.2 4.8 38 213-250 24-61 (117)
138 1pc2_A Mitochondria fission pr 65.5 5.1 0.00017 33.9 3.8 36 214-249 69-104 (152)
139 2y4t_A DNAJ homolog subfamily 65.4 22 0.00075 32.9 8.7 63 178-249 31-93 (450)
140 2yhc_A BAMD, UPF0169 lipoprote 65.1 62 0.0021 27.2 14.5 65 178-249 152-217 (225)
141 2pl2_A Hypothetical conserved 64.9 33 0.0011 29.0 9.1 87 147-250 99-185 (217)
142 4gcn_A Protein STI-1; structur 64.9 9.2 0.00032 29.8 5.1 32 219-250 11-42 (127)
143 2c2l_A CHIP, carboxy terminus 64.7 11 0.00037 33.8 6.2 87 147-249 19-105 (281)
144 2gw1_A Mitochondrial precursor 63.5 27 0.00092 32.8 9.0 64 174-247 238-301 (514)
145 3qwp_A SET and MYND domain-con 62.8 52 0.0018 31.9 11.1 74 167-244 323-399 (429)
146 2l6j_A TPR repeat-containing p 62.5 13 0.00044 26.9 5.3 34 217-250 5-38 (111)
147 1w3b_A UDP-N-acetylglucosamine 61.9 43 0.0015 30.4 9.9 31 218-248 69-99 (388)
148 2gw1_A Mitochondrial precursor 61.8 42 0.0015 31.4 10.1 72 176-250 375-449 (514)
149 2e2e_A Formate-dependent nitri 61.1 31 0.001 27.6 7.8 65 177-250 48-115 (177)
150 3mkr_A Coatomer subunit epsilo 60.2 61 0.0021 29.0 10.5 92 174-279 167-260 (291)
151 1hxi_A PEX5, peroxisome target 59.6 10 0.00035 29.3 4.4 86 147-248 32-117 (121)
152 2kat_A Uncharacterized protein 59.5 15 0.00051 27.3 5.3 35 216-250 19-53 (115)
153 1hz4_A MALT regulatory protein 57.9 61 0.0021 29.2 10.1 97 148-248 109-206 (373)
154 1w3b_A UDP-N-acetylglucosamine 57.6 38 0.0013 30.8 8.7 66 176-250 240-305 (388)
155 4abn_A Tetratricopeptide repea 57.6 69 0.0024 30.9 11.0 78 159-248 91-169 (474)
156 3rkv_A Putative peptidylprolyl 57.1 25 0.00084 27.9 6.5 74 178-251 16-98 (162)
157 4g1t_A Interferon-induced prot 57.0 26 0.00091 32.8 7.6 102 148-250 67-172 (472)
158 2if4_A ATFKBP42; FKBP-like, al 56.9 10 0.00034 35.2 4.5 65 176-249 233-297 (338)
159 3urz_A Uncharacterized protein 56.1 26 0.00088 29.5 6.7 61 181-250 12-88 (208)
160 3bee_A Putative YFRE protein; 55.1 7.7 0.00026 29.3 2.8 34 215-248 42-75 (93)
161 2pzi_A Probable serine/threoni 53.4 31 0.0011 35.3 8.0 64 178-250 438-501 (681)
162 3ax2_A Mitochondrial import re 53.0 11 0.00039 27.8 3.3 29 222-250 23-51 (73)
163 2vsy_A XCC0866; transferase, g 50.4 1.1E+02 0.0037 29.9 11.2 31 218-248 127-160 (568)
164 1kt0_A FKBP51, 51 kDa FK506-bi 49.0 55 0.0019 31.5 8.6 77 173-250 268-351 (457)
165 2c2l_A CHIP, carboxy terminus 48.9 44 0.0015 29.7 7.4 64 178-250 9-72 (281)
166 2vsy_A XCC0866; transferase, g 46.1 69 0.0024 31.3 9.0 64 177-249 27-90 (568)
167 3fp2_A TPR repeat-containing p 45.8 1.9E+02 0.0066 27.0 16.8 65 177-250 314-378 (537)
168 3fbl_A Putative uncharacterize 45.7 14 0.00047 26.7 2.6 28 160-187 10-40 (82)
169 3ffl_A Anaphase-promoting comp 43.4 17 0.00057 31.3 3.3 40 208-247 55-94 (167)
170 3ieg_A DNAJ homolog subfamily 43.4 1.6E+02 0.0055 25.4 14.9 88 147-250 135-222 (359)
171 2kc7_A BFR218_protein; tetratr 43.3 39 0.0013 24.0 5.1 32 219-250 3-34 (99)
172 2h6f_A Protein farnesyltransfe 42.9 71 0.0024 30.2 8.2 32 218-249 168-199 (382)
173 1om2_A Protein (mitochondrial 41.5 19 0.00065 28.1 3.1 28 222-249 26-53 (95)
174 4gyw_A UDP-N-acetylglucosamine 41.4 99 0.0034 32.2 9.6 32 218-249 79-110 (723)
175 4h7y_A Dual specificity protei 40.2 1.1E+02 0.0039 25.9 7.9 96 146-250 33-128 (161)
176 1nzn_A CGI-135 protein, fissio 40.2 25 0.00084 28.7 3.8 36 214-249 72-107 (126)
177 4gyw_A UDP-N-acetylglucosamine 40.1 68 0.0023 33.4 8.1 65 176-250 12-77 (723)
178 3c18_A Nucleotidyltransferase- 39.2 34 0.0011 32.0 4.9 46 220-280 134-180 (290)
179 1ouv_A Conserved hypothetical 33.6 98 0.0034 26.4 7.0 56 179-245 12-71 (273)
180 2h6f_A Protein farnesyltransfe 32.9 1.1E+02 0.0039 28.8 7.8 65 177-250 170-234 (382)
181 2r5s_A Uncharacterized protein 32.8 54 0.0018 26.3 4.9 34 216-249 108-141 (176)
182 3mkr_A Coatomer subunit epsilo 30.6 1.4E+02 0.0048 26.5 7.7 58 178-249 106-163 (291)
183 1ihg_A Cyclophilin 40; ppiase 29.9 1.4E+02 0.0047 27.9 7.8 75 176-250 226-307 (370)
184 3o48_A Mitochondria fission 1 29.4 61 0.0021 26.7 4.4 37 213-249 75-111 (134)
185 2r5s_A Uncharacterized protein 29.4 1.1E+02 0.0038 24.3 6.3 61 178-245 113-173 (176)
186 1wao_1 Serine/threonine protei 29.1 77 0.0026 30.8 6.0 60 182-250 15-74 (477)
187 2kxw_B Sodium channel protein 27.7 36 0.0012 20.3 2.0 17 147-163 4-20 (27)
188 2if4_A ATFKBP42; FKBP-like, al 24.8 81 0.0028 28.9 5.0 73 176-250 182-264 (338)
189 1ouv_A Conserved hypothetical 23.9 1.9E+02 0.0064 24.5 7.1 81 147-247 129-217 (273)
190 4g1t_A Interferon-induced prot 23.1 1.7E+02 0.0058 27.0 7.0 72 171-251 211-282 (472)
191 1y8m_A FIS1; mitochondria, unk 22.7 72 0.0024 26.6 3.7 36 214-249 75-110 (144)
192 3rjv_A Putative SEL1 repeat pr 21.5 71 0.0024 26.8 3.6 27 219-245 21-47 (212)
193 2l53_B CAM, voltage-gated sodi 20.6 57 0.002 20.0 2.0 17 147-163 4-20 (31)
194 2hr2_A Hypothetical protein; a 20.4 1.5E+02 0.005 24.8 5.3 32 217-248 12-43 (159)
195 2ond_A Cleavage stimulation fa 20.0 3.7E+02 0.013 23.4 8.4 76 175-261 136-214 (308)
No 1
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-67 Score=531.33 Aligned_cols=315 Identities=18% Similarity=0.212 Sum_probs=283.9
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHhccccCcCCCCc--hhhHHhhhh--hhhhHHHHhhhc---CCCCChHHHHHHHHHHh
Q 018359 10 HRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPS--LLSLADSLN--VFQDANRLIKQS---DNYSPFADITVPLFRSL 82 (357)
Q Consensus 10 m~~l~~yl~~v~~ai~~~dg~~La~lLs~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~vv~~~l~~~ 82 (357)
|+.+++|+.+|.+ |. ..+|+++|+.|. +..+.+.+. .+.++++.|++. .+|++|.++|.+|++++
T Consensus 1 m~~~~~fl~~i~~------~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~ve~~~~~~~w~~f~~~v~~yl~~~ 72 (455)
T 3t5v_B 1 MDMANQLLDELAH------GN--FSHLTLNLSQNGREIAILQKQLTGFDDKQLETFVEQHPAMPNDTRFKIMCTSFLNYA 72 (455)
T ss_dssp -CCHHHHHHHHHH------TC--CSSCCSCSSSSHHHHHHHHHHHHHSCHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh------cc--cceEEeCCCCCchHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence 5678999999998 33 999999998873 444544432 234577777764 56888999999999999
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhcccCCcee---hHHHHHHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHH
Q 018359 83 QHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWA---LEALYVIAYEIRVLAERADRELASN-GKSPEKLKAAGSFLMKV 158 (357)
Q Consensus 83 ~~~~~~~~~~af~~~~~~~~~l~~~~~~~~~~W~---lp~L~~~~~~L~~la~~~D~~~~~~-~~~~~~le~~a~~l~~~ 158 (357)
++++++++.++|+.+.+++++++++|.+++.+|+ +|+++.+++.++.+|.++|++.... ..+++++|+||++|+|+
T Consensus 73 rdv~~~sl~~s~dll~~~~~~l~~a~~~~~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~~~~~~~~~le~~a~~i~k~ 152 (455)
T 3t5v_B 73 RDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEFIINLAGKLDSFHLQLHTRSHQFLSHISSILSRL 152 (455)
T ss_dssp HHCCTTCSSTTHHHHHHHHHHHHTTSSSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCTTHHHHHHHHHHHHH
T ss_pred HhCCcchHHHHHHHHHHHHHHHHHHHcCCCCchHHHhHHHHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999998778998 8888889999999999999988543 34578999999999999
Q ss_pred HHhhhCCC------C---chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccC-CCCCCCCCccceeehhhhhhhHhhh
Q 018359 159 FGVLAGKG------S---KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR-IFDFEEFPKRDKVTYMYYTGRLEVF 228 (357)
Q Consensus 159 F~~~~~D~------s---Kk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~-~p~~~~~~~~~~v~y~YY~Gr~~~~ 228 (357)
|+.|++|+ + ||+|++|++|+|||+|||+|+++||+|++|++++++ +|+++.||++|+|||+||+||++++
T Consensus 153 F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~ 232 (455)
T 3t5v_B 153 FNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLL 232 (455)
T ss_dssp HHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHH
Confidence 99999983 3 999999999999999999999999999999999875 4789999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHh-cCcC-----chHHHHHHHHHHHHHHhhcCCCCChHhhccc---Cccc-cHHHHHHHhhCCHH
Q 018359 229 NENFPAADQKLSYALIN-CNPQ-----SEANIRMILKYLIPVKLSIGILPKDWLLEKY---NLVE-YSNIVQALRRGDLR 298 (357)
Q Consensus 229 ~~~~~~A~~~L~~A~~~-c~~~-----~~~n~r~IL~~LIpv~LllG~~P~~~lL~~~---~l~~-y~~l~~avr~Gnl~ 298 (357)
+++|.+|+++|++||++ ||++ +.+|+++||+||||++|++|++|++.+++++ .+.+ |.+|++|||+||+.
T Consensus 233 ~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~ 312 (455)
T 3t5v_B 233 NSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQ 312 (455)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999 9987 4799999999999999999999999999994 4665 99999999999999
Q ss_pred HHHHHHHHhhHHhHhcCc-hhhhhhhhHHHhHHhh
Q 018359 299 LLRHALEEHEDQCISCAG-ETRAPSLSKIVQENLH 332 (357)
Q Consensus 299 ~f~~~l~~~~~~f~k~gl-ylllerlr~lv~RnL~ 332 (357)
+|++++++|+.+|+++|+ |+++||+|++|||||+
T Consensus 313 ~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLi 347 (455)
T 3t5v_B 313 GVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLI 347 (455)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999
No 2
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=290.14 Aligned_cols=146 Identities=35% Similarity=0.607 Sum_probs=131.8
Q ss_pred CCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCChHhhcccCccccHH
Q 018359 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSN 287 (357)
Q Consensus 208 ~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~r~IL~~LIpv~LllG~~P~~~lL~~~~l~~y~~ 287 (357)
+.||++|+|||+||+||+++++++|.+|+++|++||++||+++.+|+++||+||||++|++|++|+++++++|++.+|.+
T Consensus 6 ~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~~~~y~~ 85 (203)
T 3t5x_A 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAE 85 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHTTCGGGHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhCchhHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHhhHHhHhcCchhhhhhhhHHHhHHhh--cc--------------cccC---CCCCCccccc
Q 018359 288 IVQALRRGDLRLLRHALEEHEDQCISCAGETRAPSLSKIVQENLH--YP--------------KTKR---PKQSSSDEVG 348 (357)
Q Consensus 288 l~~avr~Gnl~~f~~~l~~~~~~f~k~glylllerlr~lv~RnL~--~~--------------~~~~---~~~~~~~~~~ 348 (357)
|++|||+||+.+|++++++|+++|+++|+|++++|+|++|||||+ +. .... .+..+.||||
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~evE 165 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQ 165 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999998 11 1111 1223668999
Q ss_pred ccccc
Q 018359 349 CNCEG 353 (357)
Q Consensus 349 ~~~~~ 353 (357)
||++.
T Consensus 166 ~ila~ 170 (203)
T 3t5x_A 166 CILAN 170 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99863
No 3
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-30 Score=263.59 Aligned_cols=198 Identities=15% Similarity=0.189 Sum_probs=168.0
Q ss_pred HHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhcc
Q 018359 151 AGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE 230 (357)
Q Consensus 151 ~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~ 230 (357)
.-..++...+.+.-. .--.+.-.+.|++++.|...|.++++.++++... +|. ...+.+|+++|+||.||++++++
T Consensus 210 ir~~Ll~~~rta~lr-~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~-~~~sn~q~~rY~YY~GRI~a~q~ 284 (523)
T 4b4t_S 210 LRSTMMKFLKIASLK-HDNETKAMLINLILRDFLNNGEVDSASDFISKLE---YPH-TDVSSSLEARYFFYLSKINAIQL 284 (523)
T ss_dssp HHTHHHHHHHHCCSC-SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCT-TTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCc-ccCCHHHHHHHHHHHHHHHHHhc
Confidence 334566666654321 1123556689999999999999999999999775 663 34688999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcCCCCChHhhcccCc----cccHHHHHHHhhCCHHHHHHHH
Q 018359 231 NFPAADQKLSYALINCNPQS--EANIRMILKYLIPVKLSIGILPKDWLLEKYNL----VEYSNIVQALRRGDLRLLRHAL 304 (357)
Q Consensus 231 ~~~~A~~~L~~A~~~c~~~~--~~n~r~IL~~LIpv~LllG~~P~~~lL~~~~l----~~y~~l~~avr~Gnl~~f~~~l 304 (357)
+|.+|+++|++||++||+++ .++++.+++|+|||+|++|.+|++.++.++++ .+|.+|++|||.||+..|++++
T Consensus 285 ~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L 364 (523)
T 4b4t_S 285 DYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTI 364 (523)
T ss_dssp CHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999775 57999999999999999999999999999985 5799999999999999999999
Q ss_pred HHhhHHhHhcCchhhhhhhhHHHhHHhhcccccCCCCC------------Ccccccccccc
Q 018359 305 EEHEDQCISCAGETRAPSLSKIVQENLHYPKTKRPKQS------------SSDEVGCNCEG 353 (357)
Q Consensus 305 ~~~~~~f~k~glylllerlr~lv~RnL~~~~~~~~~~~------------~~~~~~~~~~~ 353 (357)
++|+.+|+++|+|.+++||+..|+|+++...++.-.++ |.||+|||++.
T Consensus 365 ~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAk 425 (523)
T 4b4t_S 365 TKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSR 425 (523)
T ss_dssp HHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999993223333334 34889999863
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.72 E-value=6.1e-07 Score=88.82 Aligned_cols=227 Identities=14% Similarity=0.115 Sum_probs=155.2
Q ss_pred HHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHH---------HHHhCCCChhHHHHHHHHHHHHHHhhhCCCCch
Q 018359 99 KSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADR---------ELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKR 169 (357)
Q Consensus 99 ~~~~~l~~~~~~~~~~W~lp~L~~~~~~L~~la~~~D~---------~~~~~~~~~~~le~~a~~l~~~F~~~~~D~sKk 169 (357)
++++.++..|...+.. ....+.+|.+...+|..-++ .+..-=-....+.+|...+.+.-+-|..-+. +
T Consensus 59 k~v~~l~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-~ 135 (394)
T 3txn_A 59 KLVRSLVDMFLDMDAG--TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD-K 135 (394)
T ss_dssp HHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-T
T ss_pred HHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-c
Confidence 3455555555542211 35556666666666652111 0000000012455666777777777765322 4
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccC--CCCCCCCCccceeehhhhhhhHhh-hccChHHHHHHHHHHHHhc
Q 018359 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR--IFDFEEFPKRDKVTYMYYTGRLEV-FNENFPAADQKLSYALINC 246 (357)
Q Consensus 170 ~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~--~p~~~~~~~~~~v~y~YY~Gr~~~-~~~~~~~A~~~L~~A~~~c 246 (357)
.-++-+--...++|+.++|+.-++..+....... ++ .|..-+..++.+.|.+++ .+++|.+|..+|-.||...
T Consensus 136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~----~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY----CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC----CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 5666677788999999999999998887654321 21 356678999999999999 9999999999999999877
Q ss_pred CcCchHHHHHHHHHHHHHHhhcCCCCChHh-hc-----cc---CccccHHHHHHHhhCCHHHHHHHHHHhhHHhHhcCch
Q 018359 247 NPQSEANIRMILKYLIPVKLSIGILPKDWL-LE-----KY---NLVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAGE 317 (357)
Q Consensus 247 ~~~~~~n~r~IL~~LIpv~LllG~~P~~~l-L~-----~~---~l~~y~~l~~avr~Gnl~~f~~~l~~~~~~f~k~gly 317 (357)
.......+..+++|++-++|+.+..|...- +. +| .+..+..++.|.+.||+..|.+.+++++..|..+...
T Consensus 212 ~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l 291 (394)
T 3txn_A 212 DSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIV 291 (394)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHH
T ss_pred cccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHH
Confidence 655556778899999999999988666532 11 12 2234788999999999999999999998877776542
Q ss_pred -----hhhhhhhHHHhHHhh
Q 018359 318 -----TRAPSLSKIVQENLH 332 (357)
Q Consensus 318 -----lllerlr~lv~RnL~ 332 (357)
.+..+++.-+++.++
T Consensus 292 ~~h~~~L~~~Ir~~~L~~i~ 311 (394)
T 3txn_A 292 QAHLGTLYDTMLEQNLCRII 311 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 233566666666665
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.3e-06 Score=84.57 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhh--hhhHhhhccChHHHHHHHHHHHHhcC
Q 018359 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYY--TGRLEVFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 170 ~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY--~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (357)
.+.+++-..+.+.|++.|....|+++++.+++. +...+..+ ..|.+.|| .|.++..+++|.+++.+.-.++..++
T Consensus 124 ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~-l~~~~~~~--~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 124 DGILLIDSEIARTYLLKNDLVKARDLLDDLEKT-LDKKDSIP--LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp CSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-HHHSCCSS--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-hhccCCcc--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 678889999999999999999999999998853 11112222 24555555 57777889999999999999998766
Q ss_pred cC--chHHHHHHHHHHHHHHhhcC-CCCCh-HhhcccCc---------cccHHHHHHHhhCCHHHHHHHHHHhhHH--hH
Q 018359 248 PQ--SEANIRMILKYLIPVKLSIG-ILPKD-WLLEKYNL---------VEYSNIVQALRRGDLRLLRHALEEHEDQ--CI 312 (357)
Q Consensus 248 ~~--~~~n~r~IL~~LIpv~LllG-~~P~~-~lL~~~~l---------~~y~~l~~avr~Gnl~~f~~~l~~~~~~--f~ 312 (357)
.. .....+.-+.|.+.+..++| .+|.+ ++|..+.+ ..+.++.++...||+..|++.++.|... ++
T Consensus 201 ~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l 280 (393)
T 4b4t_O 201 PSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPIL 280 (393)
T ss_dssp TSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcch
Confidence 32 34555666666666776664 44444 56655432 2368899999999999999998877554 45
Q ss_pred hcCchhhhhhhhHHHhHHhh
Q 018359 313 SCAGETRAPSLSKIVQENLH 332 (357)
Q Consensus 313 k~glylllerlr~lv~RnL~ 332 (357)
..+.-.+++|+|.+++..|.
T Consensus 281 ~~~~~~l~~kirll~l~~l~ 300 (393)
T 4b4t_O 281 AQHESFLRQKICLMTLIETV 300 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 55666678999999998887
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=5.9e-05 Score=75.50 Aligned_cols=168 Identities=12% Similarity=0.045 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
...+|+++|...-.-+.+-.+ +.--.-+.....++|+..+++.-++.+++.+....+. ..-+..-+..|+.|.|+++
T Consensus 152 ~~~eA~~iL~~l~~Et~~~~~-~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~--~~~~~~lk~~~~~~~~~~~ 228 (445)
T 4b4t_P 152 KIDEAADILCELQVETYGSME-MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK--NPKYESLKLEYYNLLVKIS 228 (445)
T ss_dssp CHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc--cCCcHHHHHHHHHHHHHHH
Confidence 456777777777655543222 2334445568999999999999999999988643221 1224567899999999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcC-chHHHHHHHHHHHHHHhhcCCCCChH-hhccc-------CccccHHHHHHHhhCCH
Q 018359 227 VFNENFPAADQKLSYALINCNPQ-SEANIRMILKYLIPVKLSIGILPKDW-LLEKY-------NLVEYSNIVQALRRGDL 297 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~-~~~n~r~IL~~LIpv~LllG~~P~~~-lL~~~-------~l~~y~~l~~avr~Gnl 297 (357)
+.+++|.+|..++..+|...... ....+...|.+.|-+.++.+.-|... ++.+. .+..|..+.++..++++
T Consensus 229 ~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L 308 (445)
T 4b4t_P 229 LHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNEL 308 (445)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCS
T ss_pred HHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchH
Confidence 99999999999999999876533 34566778888888888877767554 33331 13458999999999999
Q ss_pred HHHHHHHHHhhHHhHhcCch
Q 018359 298 RLLRHALEEHEDQCISCAGE 317 (357)
Q Consensus 298 ~~f~~~l~~~~~~f~k~gly 317 (357)
..|...++.++..+..+.+.
T Consensus 309 ~~~~~~~~~~~~~L~~~~~~ 328 (445)
T 4b4t_P 309 MRWPIVQKTYEPVLNEDDLA 328 (445)
T ss_dssp SSHHHHHHHTCSSTTTCCSS
T ss_pred hhhHHHHHHHHHHhcccchh
Confidence 99999999998877766553
No 7
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.34 E-value=0.00036 Score=63.89 Aligned_cols=151 Identities=7% Similarity=0.005 Sum_probs=111.1
Q ss_pred HHHHHhcCChhhHHHHHHHhhc-----cCCCCCCCCCccc--eeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc--
Q 018359 180 FKIYFKLGTVHLCRSVIRSIET-----ARIFDFEEFPKRD--KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS-- 250 (357)
Q Consensus 180 ~kiYfkl~~~~l~~nlik~i~~-----~~~p~~~~~~~~~--~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~-- 250 (357)
++-+|.-++++.|..+++.++- ..+|+ ..+..+ ..++-|+.|....++.+..+|++....+++.-|.+.
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p--~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~ 91 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLFVP--TSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLV 91 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSC--CSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCC
Confidence 4667788999999999998753 22443 223333 568999999999999999999999999999877553
Q ss_pred -hHHHHHHHHHHHHHHhhcCCCCChHhhcc-c---C-------ccccHHHHHHHhhCCHHHHHHHHHHhhHHhHhcCchh
Q 018359 251 -EANIRMILKYLIPVKLSIGILPKDWLLEK-Y---N-------LVEYSNIVQALRRGDLRLLRHALEEHEDQCISCAGET 318 (357)
Q Consensus 251 -~~n~r~IL~~LIpv~LllG~~P~~~lL~~-~---~-------l~~y~~l~~avr~Gnl~~f~~~l~~~~~~f~k~glyl 318 (357)
..|+-.++.|-|-.-|..|.+|.....-+ - . +.....+.+|+..||+.+|-+..++........=+-.
T Consensus 92 ~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~ 171 (229)
T 4b0z_A 92 PSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKI 171 (229)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHH
Confidence 35888888888878788898887654321 1 1 1235789999999999999999987643221221234
Q ss_pred hhhhhhHHHhHHhh
Q 018359 319 RAPSLSKIVQENLH 332 (357)
Q Consensus 319 llerlr~lv~RnL~ 332 (357)
++++.|.-+.+..-
T Consensus 172 l~~~vR~~~l~~i~ 185 (229)
T 4b0z_A 172 VMSMVRNEIATCAE 185 (229)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66888888888766
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0037 Score=59.55 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.+....+.... .+....-+.+.+.++|..+|++.-++.+++...... +.. ..|...+.+++.+.|+++
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLD-DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA-NSI-YCPTQTVAELDLMSGILH 226 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSS-CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHS-CCCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh-hcC-CCchHHHHHHHHHHHHHH
Confidence 45677777888777665532 345666778899999999999999999987654321 111 124556788999999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcC----chHHHHHHHHHHHHHHhhcCCCCChH-hhcc------cC---ccccHHHHHHH
Q 018359 227 VFNENFPAADQKLSYALINCNPQ----SEANIRMILKYLIPVKLSIGILPKDW-LLEK------YN---LVEYSNIVQAL 292 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~----~~~n~r~IL~~LIpv~LllG~~P~~~-lL~~------~~---l~~y~~l~~av 292 (357)
..+++|.+|..++..||...+.. ........+.+.+-+.+..+..+... .+.. .. ...+..+..+.
T Consensus 227 ~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAY 306 (434)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 99999999999999999865432 22334445666665655544322211 1111 11 12478899999
Q ss_pred hhCCHHHHHHHHHHhhHHhHhcCc
Q 018359 293 RRGDLRLLRHALEEHEDQCISCAG 316 (357)
Q Consensus 293 r~Gnl~~f~~~l~~~~~~f~k~gl 316 (357)
..+++..|.+.++.+...+..+..
T Consensus 307 ~~~~l~~~~~~~~~~~~~~~~~~~ 330 (434)
T 4b4t_Q 307 NNRSLLDFNTALKQYEKELMGDEL 330 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHTCSHH
T ss_pred HhhhHHHHHHHHHHHHHHHcccHH
Confidence 999999999999999887766643
No 9
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0061 Score=60.38 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhh
Q 018359 149 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF 228 (357)
Q Consensus 149 e~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~ 228 (357)
+.|.+.+.++...|.+++. +.-+ .-..+++|+..++...++..++.+++... +.-....+..|+.|.|++++.
T Consensus 148 ~~A~~~~~~~~~~~~~~~~-kid~---~l~~irl~l~~~d~~~~~~~~~ka~~~~~---~~~d~~~~~~lk~~~gl~~l~ 220 (429)
T 4b4t_R 148 DNAEKTLGKSLSKAISTGA-KIDV---MLTIARLGFFYNDQLYVKEKLEAVNSMIE---KGGDWERRNRYKTYYGIHCLA 220 (429)
T ss_dssp TTHHHHHHHHHHHHTCCCS-HHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHHT---TCCCTHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCChHH-HHHH---HHHHHHHHHHhccHHHHHHHHHHHHHhhh---cCCCHHHHHHHHHHHHHHHHH
Confidence 3566778887777877533 3333 33678899999999999999998875411 111234566899999999999
Q ss_pred ccChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCC--------ChHhhcccC----ccccHHHHHHHhhCC
Q 018359 229 NENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILP--------KDWLLEKYN----LVEYSNIVQALRRGD 296 (357)
Q Consensus 229 ~~~~~~A~~~L~~A~~~c~~~~~~n~r~IL~~LIpv~LllG~~P--------~~~lL~~~~----l~~y~~l~~avr~Gn 296 (357)
..+|.+|..+|-.++........-....++.|.+.++++....+ +.....-.. +..+..++.+.-.++
T Consensus 221 ~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~ 300 (429)
T 4b4t_R 221 VRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASD 300 (429)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTC
T ss_pred hChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhcc
Confidence 99999999999999998776555667777888888888764222 111111111 123456688888999
Q ss_pred HHHHHHHHH-Hhh-----HHhHhcCchhhhhhhhHHHhHHhh
Q 018359 297 LRLLRHALE-EHE-----DQCISCAGETRAPSLSKIVQENLH 332 (357)
Q Consensus 297 l~~f~~~l~-~~~-----~~f~k~glylllerlr~lv~RnL~ 332 (357)
+..|-+.+. .++ +.|++.++=.+..++|.-+++.++
T Consensus 301 ~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~ 342 (429)
T 4b4t_R 301 YASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLL 342 (429)
T ss_dssp HHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999876654 333 345555555577888888888888
No 10
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=92.72 E-value=2.7 Score=34.51 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hccCCCCCCCCCccceeehhhhhhhH
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i-~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
..++|.+.+.++...+...+..........+.+-.+|++.|+++-+...+... +... . .-.......-++.+|.+
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~--~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ--Q--ADDQVAIACAFRGLGDL 156 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--h--ccchHHHHHHHHHHHHH
Confidence 34566666676666654322234466667778899999999999988776643 2211 0 01122334556889999
Q ss_pred hhhccChHHHHHHHHHHHHhcCcC
Q 018359 226 EVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
+...+++.+|.+++..|+..+...
T Consensus 157 ~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999876543
No 11
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=92.62 E-value=2.9 Score=36.56 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=88.2
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhhC
Q 018359 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (357)
Q Consensus 85 ~~~~~~~~af~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~L~~la~~~D~~~~~~~~~~~~le~~a~~l~~~F~~~~~ 164 (357)
...+++.+|...+.+.+....+.+.. +..+....+ ..+|... . .. ...++|...+.++...+..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~-------~~la~~~---~-~~----~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQL-------NNLALLC---Q-NQ----GKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH-------HHHHHHH---H-TT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHHH-------HHHHHHH---H-Hc----CCHHHHHHHHHHHHHHHHH
Confidence 34578888888888877766655432 211111111 1122111 1 11 2455666666666655432
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc----CCCC---------------------------------
Q 018359 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA----RIFD--------------------------------- 206 (357)
Q Consensus 165 D-~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~----~~p~--------------------------------- 206 (357)
. +..........+.+-.+|++.|+++-+...++..-.. ....
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 1123344556677889999999999998877644321 0000
Q ss_pred -CCC--CCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 207 -FEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 207 -~~~--~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
+.. -...+....++.+|.++...+++.+|.+++..|+...|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000 022455677889999999999999999999999987664
No 12
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=92.56 E-value=1.7 Score=38.12 Aligned_cols=145 Identities=10% Similarity=-0.019 Sum_probs=87.1
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhhC
Q 018359 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (357)
Q Consensus 85 ~~~~~~~~af~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~L~~la~~~D~~~~~~~~~~~~le~~a~~l~~~F~~~~~ 164 (357)
...+++.+|...+.+.+...-+.+.. +......... .+|... . .. ...++|...+.++...+..
T Consensus 80 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~-------~l~~~~---~-~~----g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 80 RDQNKYKDAANLLNDALAIREKTLGK-DHPAVAATLN-------NLAVLY---G-KR----GKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH-------HHHHHH---H-TT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHH-------HHHHHH---H-Hc----CcHHHHHHHHHHHHHHHHH
Confidence 34578888888877777666555432 2111111111 122111 1 01 2345555556665554421
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc-C-CCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHH
Q 018359 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA-R-IFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 241 (357)
Q Consensus 165 D-~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~-~-~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~ 241 (357)
. +..........+.+-.+|++.|+++-+...++..-.. . .. .-........++.+|.++...+++.+|.+++..
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL---GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS---CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 0122344556667889999999999998877754321 0 10 011334567788999999999999999999999
Q ss_pred HHHhcCc
Q 018359 242 ALINCNP 248 (357)
Q Consensus 242 A~~~c~~ 248 (357)
|+..+|.
T Consensus 221 al~~~~~ 227 (311)
T 3nf1_A 221 ILTRAHE 227 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 13
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=92.15 E-value=1.6 Score=37.53 Aligned_cols=144 Identities=9% Similarity=-0.012 Sum_probs=87.3
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhhC
Q 018359 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (357)
Q Consensus 85 ~~~~~~~~af~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~L~~la~~~D~~~~~~~~~~~~le~~a~~l~~~F~~~~~ 164 (357)
...+++.+|...+.+.+....+.+.. +.......+ ..+|...- .. ...++|...+.++...+..
T Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~-------~~l~~~~~----~~----g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 54 RDQNKYKEAAHLLNDALAIREKTLGK-DHPAVAATL-------NNLAVLYG----KR----GKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCT-TCHHHHHHH-------HHHHHHHH----TT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHcCC-cchHHHHHH-------HHHHHHHH----Hh----ccHHHHHHHHHHHHHHHHH
Confidence 44678999999888887766655432 222222211 22222111 01 2344555555555544321
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHH
Q 018359 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 241 (357)
Q Consensus 165 D-~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~--~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~ 241 (357)
. +............+-.+|++.|+++-+...++..-.. ... .-.....+..++.+|.++...+++.+|.+++..
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL---GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 0112344455667888999999999998877644321 000 001234567788999999999999999999999
Q ss_pred HHHhcC
Q 018359 242 ALINCN 247 (357)
Q Consensus 242 A~~~c~ 247 (357)
|+..++
T Consensus 195 ~l~~~~ 200 (283)
T 3edt_B 195 ILTRAH 200 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 14
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.08 E-value=4.6 Score=36.30 Aligned_cols=216 Identities=11% Similarity=-0.011 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 018359 71 FADITVPLFRSLQHY-RTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLK 149 (357)
Q Consensus 71 ~~~vv~~~l~~~~~~-~~~~~~~af~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~L~~la~~~D~~~~~~~~~~~~le 149 (357)
|++.+..|-+....+ ..+++.+|.+.+.+.+....+. . +.. ..+..+..++..... . ...+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~-------~~a~~~~~lg~~~~~----~----g~~~ 94 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA-G--NED-------EAGNTYVEAYKCFKS----G----GNSV 94 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT-T--CHH-------HHHHHHHHHHHHHHH----T----TCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C--CHH-------HHHHHHHHHHHHHHH----C----CCHH
Confidence 666666666654443 3567888888777666543221 1 110 111222233322211 1 1334
Q ss_pred HHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhc-CChhhHHHHHH-HhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 150 AAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKL-GTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 150 ~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl-~~~~l~~nlik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
+|...+.++....... ....+.....+.+-.+|.+. |+++-+-..++ +++-. |... ........+.-+|.++.
T Consensus 95 ~A~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~--~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHR-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQ--SVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCC--ChHHHHHHHHHHHHHHH
Confidence 4555555554443321 22344455566788899994 99998876655 44321 1111 11223445677899999
Q ss_pred hccChHHHHHHHHHHHHhcCcCchH--HHHHHHHHHHHHHhhcCCCCChH-hhccc-----Cc------cccHHHHHHHh
Q 018359 228 FNENFPAADQKLSYALINCNPQSEA--NIRMILKYLIPVKLSIGILPKDW-LLEKY-----NL------VEYSNIVQALR 293 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~~~--n~r~IL~~LIpv~LllG~~P~~~-lL~~~-----~l------~~y~~l~~avr 293 (357)
-.++|.+|.+++..|+..+|..... .....+.-+.-+.+-+|.+.... .+++. .. ..+..+..+..
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999998865421 22223333333444456654332 22221 00 12456778888
Q ss_pred hCCHHHHHHHHHHhhH
Q 018359 294 RGDLRLLRHALEEHED 309 (357)
Q Consensus 294 ~Gnl~~f~~~l~~~~~ 309 (357)
.||...|+++++.++.
T Consensus 250 ~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDN 265 (292)
T ss_dssp TTCTTTHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcc
Confidence 9999999999999855
No 15
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=91.67 E-value=3.7 Score=31.60 Aligned_cols=97 Identities=10% Similarity=-0.086 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|...+.++.......+. ..........+-.+|+..|+++-+...++..-... +. .-........++.+|.++.
T Consensus 65 ~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~--~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 65 FETASEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QE--LKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HH--ccchHhHHHHHHHHHHHHH
Confidence 44555555555554432211 23334455677889999999999887776433210 01 1123445667889999999
Q ss_pred hccChHHHHHHHHHHHHhcCc
Q 018359 228 FNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~ 248 (357)
..+++.+|.+++..|+..+..
T Consensus 141 ~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999987653
No 16
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=91.03 E-value=2.7 Score=39.10 Aligned_cols=173 Identities=10% Similarity=0.050 Sum_probs=100.6
Q ss_pred HHHhhhhccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 018359 79 FRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKV 158 (357)
Q Consensus 79 l~~~~~~~~~~~~~af~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~L~~la~~~D~~~~~~~~~~~~le~~a~~l~~~ 158 (357)
++.......+++.+|...+.+.+.. +...+... ..+..+..+|...-. . ...++|...+.++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~------~~a~~~~~lg~~~~~----~----~~~~~A~~~~~~a 169 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESK----LIFVKDRI------EKAEFFFKMSESYYY----M----KQTYFSMDYARQA 169 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT----GGGCCCHH------HHHHHHHHHHHHHHH----T----TCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH----HhhCCCHH------HHHHHHHHHHHHHHH----c----CCHHHHHHHHHHH
Confidence 3444456678899988876665532 22211111 011112222222110 1 1345566666666
Q ss_pred HHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHH
Q 018359 159 FGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237 (357)
Q Consensus 159 F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~ 237 (357)
.......+....+.....+.+-.+|.++|+++-+...++ +++-.. .. -.......-++.+|.++...++|.+|.+
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE--AE--KQPQLMGRTLYNIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HT--TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--Hc--CChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 666555433355666777888899999999999987765 333221 11 1123445567889999999999999999
Q ss_pred HHHHHHHhcCcCch-HHHHHHHHHHHHHHhhcCCCCC
Q 018359 238 KLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPK 273 (357)
Q Consensus 238 ~L~~A~~~c~~~~~-~n~r~IL~~LIpv~LllG~~P~ 273 (357)
++..|+..+..... .+.-.++..|--+-.-+|++..
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 282 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDK 282 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHH
Confidence 99999996653322 2233444444444444666543
No 17
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=90.68 E-value=5.9 Score=36.07 Aligned_cols=123 Identities=10% Similarity=-0.055 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++.......+ ...........+-.+|.+.|+++-+...++..-.. .+. .-.........+.+|.++
T Consensus 242 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~--~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQE--LNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCc-CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-HHh--cCCcHHHHHHHHHHHHHH
Confidence 34555566666655544322 24455566678889999999999998877644321 011 112345567788999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc-hHHHHHHHHHHHHHHhhcCCCCC
Q 018359 227 VFNENFPAADQKLSYALINCNPQS-EANIRMILKYLIPVKLSIGILPK 273 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~-~~n~r~IL~~LIpv~LllG~~P~ 273 (357)
.-.+++.+|.+++..|+..++... ......++..|.-+-..+|...+
T Consensus 318 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999999999999999876543 34555556666666666776543
No 18
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=90.32 E-value=7 Score=32.49 Aligned_cols=95 Identities=11% Similarity=-0.021 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhH---------HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceee
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVG---------ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT 217 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g---------~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~ 217 (357)
..++|...+.++....-.+.....+ ...+...+-.+|+++|+++-+...+...-.. .| +...
T Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~ 123 (198)
T 2fbn_A 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DK--------NNVK 123 (198)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST--------TCHH
T ss_pred CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cc--------ccHH
Confidence 4566777777776655444211111 1234557778899999999998777654332 12 2346
Q ss_pred hhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+|.+|..++..++|.+|.+++..|+...|.+.
T Consensus 124 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 124 ALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 789999999999999999999999999988653
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.86 E-value=4 Score=32.89 Aligned_cols=89 Identities=6% Similarity=-0.059 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-.+ . .+...+-.+|+++|+++-+...++..-.. .|. ....+|.+|.++
T Consensus 26 ~~~~A~~~~~~al~~~p~~----~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~ 89 (164)
T 3sz7_A 26 EYSKAIDLYTQALSIAPAN----P---IYLSNRAAAYSASGQHEKAAEDAELATVV-DPK--------YSKAWSRLGLAR 89 (164)
T ss_dssp CHHHHHHHHHHHHHHSTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcC----H---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHH
Confidence 4556666666665543221 2 23346667899999999998877754322 121 256789999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCch
Q 018359 227 VFNENFPAADQKLSYALINCNPQSE 251 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (357)
...++|.+|.+++..|+...|.+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999997654
No 20
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=89.49 E-value=2 Score=33.16 Aligned_cols=97 Identities=9% Similarity=-0.023 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|...+.++....... ..........+.+-.+|+..|+++.+...++..-.. .+. .-.........+.+|..+.
T Consensus 25 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~--~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQ--LKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHH--hCCcHHHHHHHHHHHHHHH
Confidence 445555555555444322 123445556678889999999999998877754321 011 1123345677889999999
Q ss_pred hccChHHHHHHHHHHHHhcCc
Q 018359 228 FNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~ 248 (357)
..+++.+|.+++..|+..++.
T Consensus 101 ~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999987653
No 21
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.46 E-value=5 Score=34.94 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=84.2
Q ss_pred HHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 018359 77 PLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLM 156 (357)
Q Consensus 77 ~~l~~~~~~~~~~~~~af~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~L~~la~~~D~~~~~~~~~~~~le~~a~~l~ 156 (357)
.|.+....+..+++.+|...+.+++. .. ++..+....++..+.-.... ...++|...+.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~----~~--p~~~~~~~a~~~lg~~~~~~---------------~~~~~A~~~~~ 76 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFT----YG--RTHEWAADAQFYLARAYYQN---------------KEYLLAASEYE 76 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGG----GC--SCSTTHHHHHHHHHHHHHHT---------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH----hC--CCCcchHHHHHHHHHHHHHh---------------CcHHHHHHHHH
Confidence 34555555667888888876555442 22 23334333333332221111 24556666666
Q ss_pred HHHHhhhCCCCchhHHHHHHHHHHHHHHh--------cCChhhHHHHHHHhhccCCCCCCCCCccce------------e
Q 018359 157 KVFGVLAGKGSKRVGALYLTCQLFKIYFK--------LGTVHLCRSVIRSIETARIFDFEEFPKRDK------------V 216 (357)
Q Consensus 157 ~~F~~~~~D~sKk~g~~~l~n~L~kiYfk--------l~~~~l~~nlik~i~~~~~p~~~~~~~~~~------------v 216 (357)
+....--++...-.+.+ .+-.+|++ .|+++-+...++.+-.. .|.. +.... .
T Consensus 77 ~~l~~~p~~~~~~~a~~----~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~---~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 77 RFIQIYQIDPRVPQAEY----ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-YPNH---ELVDDATQKIRELRAKLA 148 (261)
T ss_dssp HHHHHCTTCTTHHHHHH----HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-CTTC---TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchhHHHHH----HHHHHHHHhcccccccchhHHHHHHHHHHHHHH-CcCc---hhHHHHHHHHHHHHHHHH
Confidence 66554332222122222 44567788 89999998888765432 2321 11111 1
Q ss_pred ehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.-.|.+|++++-.++|.+|...++.++..-|.+.
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 1128999999999999999999999999988654
No 22
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=89.35 E-value=5.2 Score=29.59 Aligned_cols=87 Identities=15% Similarity=-0.059 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|...+.++....-.+ . .....+-.+|++.|+++.+...++..-.. .|. ....++.+|.++.
T Consensus 28 ~~~A~~~~~~~~~~~~~~----~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPAN----A---VYFCNRAAAYSKLGNYAGAVQDCERAICI-DPA--------YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC----H---HHHHHHHHHHHHhhchHHHHHHHHHHHhc-Ccc--------CHHHHHHHHHHHH
Confidence 455555555555442221 1 23345677889999999998887755432 121 1456789999999
Q ss_pred hccChHHHHHHHHHHHHhcCcCc
Q 018359 228 FNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+++.+|.+.+..|+...|.+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCHHHHHHHHHHHHhcCccch
Confidence 99999999999999999988654
No 23
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=89.24 E-value=3.8 Score=30.79 Aligned_cols=66 Identities=11% Similarity=-0.139 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+-.+|++.++++-+...++..-.. .|. .....+.+|..+...+++.+|.+++..|+...|.+.
T Consensus 53 ~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 53 YSNRAACYTKLLEFQLALKDCEECIQL-EPT--------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 346667899999999998887754432 121 245788999999999999999999999999988654
No 24
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=89.24 E-value=2.9 Score=38.90 Aligned_cols=122 Identities=9% Similarity=-0.035 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
.+.|...+.++..................+.+-.+|+++|+++.+...+. +++-.. .. -.......-++.+|.++
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~--~~--~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM--DI--QNDRFIAISLLNIANSY 232 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HT--TCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--Hc--CCHHHHHHHHHHHHHHH
Confidence 34555556666555544333234566667788889999999999887665 443221 10 11224556788899999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCC
Q 018359 227 VFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPK 273 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~~~n~r~IL~~LIpv~LllG~~P~ 273 (357)
...+++.+|.+++..|+..+........-.++..|--+-.-+|+...
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 279 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK 279 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999865432222223334444434444565543
No 25
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=89.14 E-value=1.4 Score=35.83 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=51.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+=++|++.|+++.+...++..-.. .|. -...++.+|.++...+++.+|..++..|+...|.+.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 99 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINV-QER--------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK 99 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence 3557899999999999887744322 121 245789999999999999999999999999988664
No 26
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.05 E-value=1.1 Score=34.47 Aligned_cols=68 Identities=7% Similarity=-0.019 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 174 ~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.....+-.+|+++|+++-+...++..-.. .|. . ...++++|..+...+++.+|.+.+..|+...|.+.
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPN------H--QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC------c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 34456778999999999999888755432 222 1 46788999999999999999999999999988654
No 27
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=88.80 E-value=1.4 Score=33.00 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=50.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.+-.+|++.|+++-+...++..-.. .|. ....+|++|..+...+++.+|.+.+..|+..+|..
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVET-DPD--------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 5567899999999998888754332 222 12378999999999999999999999999988754
No 28
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=88.52 E-value=15 Score=33.75 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|...+.++....... ............+-.+|++.|+++-+...++..-.. .|. .-........++.+|.++.
T Consensus 199 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~--~~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI-ARE--FGDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHh--cCCcHHHHHHHHHHHHHHH
Confidence 566666666665544322 123455556678889999999999998877644321 111 0122334567889999999
Q ss_pred hccChHHHHHHHHHHHHhcCcCc-hHHHHHHHHHHHHHHhhcCCCCC
Q 018359 228 FNENFPAADQKLSYALINCNPQS-EANIRMILKYLIPVKLSIGILPK 273 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~-~~n~r~IL~~LIpv~LllG~~P~ 273 (357)
..+++.+|.+++..|+..++... ....-.++..+.-+-+..|++..
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999887543 22333444444444444676543
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=88.50 E-value=5.4 Score=35.13 Aligned_cols=75 Identities=11% Similarity=0.013 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCC-CCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDF-EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 175 l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~-~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+.+-.+|++.|+++-+...++..-.. .|.. +...........+.+|..+...+++.+|.++++.|+...|...
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEK-IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 4456778999999999999888755432 1111 1222345567889999999999999999999999999988654
No 30
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.30 E-value=11 Score=32.00 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=85.9
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhhC
Q 018359 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (357)
Q Consensus 85 ~~~~~~~~af~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~L~~la~~~D~~~~~~~~~~~~le~~a~~l~~~F~~~~~ 164 (357)
...+++.+|...+.+.+...-+.... +....... +..+|... . .. ...++|...+.++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~-------~~~la~~~---~-~~----g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGK-FHPDVAKQ-------LNNLALLC---Q-NQ----GKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHH-------HHHHHHHH---H-TT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCC-CChHHHHH-------HHHHHHHH---H-Hc----CCHHHHHHHHHHHHHHHHH
Confidence 44678999999888887776666543 11111111 12222211 1 01 2445666666666555322
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc----CCCC---------------------------------
Q 018359 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA----RIFD--------------------------------- 206 (357)
Q Consensus 165 D-~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~----~~p~--------------------------------- 206 (357)
. .............+-.+|++.|+++-+...++..-.. ..+.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1 1112334455667889999999999988877644321 0000
Q ss_pred -CCC--CCccceeehhhhhhhHhhhccChHHHHHHHHHHHHh
Q 018359 207 -FEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (357)
Q Consensus 207 -~~~--~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (357)
+.. -...+....++.+|.++...+++.+|.+.+..|++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 000 012445567888999999999999999999999863
No 31
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=88.14 E-value=2.2 Score=34.60 Aligned_cols=64 Identities=9% Similarity=-0.045 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
..+-.+|+++|+++-+...++..-.. .|. -...+|++|..+...+++.+|.+++..|+..+|.+
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVM-DIX--------EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-CCC--------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 35677899999999998877754322 121 12467999999999999999999999999998854
No 32
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=87.84 E-value=7.2 Score=29.35 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.+....--++ ......++ .+-.+|++.|+++-+...++.+-.. .|.. .......|.+|..+
T Consensus 17 ~~~~A~~~~~~~~~~~p~~-~~~~~~~~---~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~-----~~~~~~~~~la~~~ 86 (129)
T 2xev_A 17 KYDDASQLFLSFLELYPNG-VYTPNALY---WLGESYYATRNFQLAEAQFRDLVSR-YPTH-----DKAAGGLLKLGLSQ 86 (129)
T ss_dssp CHHHHHHHHHHHHHHCSSS-TTHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHH-CTTS-----TTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC-cccHHHHH---HHHHHHHHhccHHHHHHHHHHHHHH-CCCC-----cccHHHHHHHHHHH
Confidence 3455666665554432221 11112222 4556789999999999888765432 2221 11245678999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+.+..++...|.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCh
Confidence 999999999999999999988654
No 33
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=87.68 E-value=1.2 Score=35.13 Aligned_cols=87 Identities=9% Similarity=-0.115 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccceeehhhhhhhH
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~-i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
..++|...+.++....-. ...+ -..+-.+|+++|+++-+-..++. ++-. |. -+..+|.+|..
T Consensus 28 ~~~~A~~~~~~al~~~p~----~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~~ 90 (126)
T 4gco_A 28 DYPTAMRHYNEAVKRDPE----NAIL---YSNRAACLTKLMEFQRALDDCDTCIRLD--SK--------FIKGYIRKAAC 90 (126)
T ss_dssp CHHHHHHHHHHHHHHCTT----CHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC----CHHH---HHHHhhHHHhhccHHHHHHHHHHHHHhh--hh--------hhHHHHHHHHH
Confidence 456666666666544222 2222 23566789999999988776663 4321 21 23468999999
Q ss_pred hhhccChHHHHHHHHHHHHhcCcCc
Q 018359 226 EVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+...++|.+|.+.+..|+...|.+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 9999999999999999999998664
No 34
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=87.37 E-value=2.3 Score=32.68 Aligned_cols=86 Identities=13% Similarity=0.010 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-. ... +...+-.+|+++|+++-+...++..-.. .|. ....+|.+|..+
T Consensus 24 ~~~~A~~~~~~al~~~~~----~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~ 87 (137)
T 3q49_B 24 KYPEAAACYGRAITRNPL----VAV---YYTNRALCYLKMQQPEQALADCRRALEL-DGQ--------SVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHHCTT----CHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcC----cHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cch--------hHHHHHHHHHHH
Confidence 345556666665544222 122 3446677899999999998877754432 121 345788999999
Q ss_pred hhccChHHHHHHHHHHHHhcCc
Q 018359 227 VFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
...+++.+|.+++..|+...|.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999998886
No 35
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.28 E-value=3.7 Score=31.59 Aligned_cols=91 Identities=10% Similarity=-0.064 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++.... ++ ..........+-.+|++.++++-+...++..-.. .| . ....+|.+|..+
T Consensus 43 ~~~~A~~~~~~a~~~~---~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~------~--~~~~~~~~a~~~ 109 (148)
T 2dba_A 43 DYGGALAAYTQALGLD---AT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DG------G--DVKALYRRSQAL 109 (148)
T ss_dssp CHHHHHHHHHHHHTSC---CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TS------C--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc---cc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-Cc------c--CHHHHHHHHHHH
Confidence 3455555555554331 11 1112234446677899999999988877654322 12 1 256788999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+++..|+...|.+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 110 EKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcH
Confidence 999999999999999999988653
No 36
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=87.01 E-value=2.2 Score=33.80 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=49.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.+-.+|++.|+++.+...++..-.. .|. -...+|++|..+...+++.+|.+++..|+...|.+
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGALM-DIN--------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc-CCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5566889999999998887754332 121 12467899999999999999999999999998854
No 37
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=86.86 E-value=2.5 Score=34.11 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 174 ~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+...+-.+|+++|+++-|...+...-.. -| ..+..+|.+|..+...++|.+|...+..|+...|.+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR-EE--------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-ST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CC--------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 44567788999999999887766533221 12 1245789999999999999999999999999988654
No 38
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=86.78 E-value=2.4 Score=30.94 Aligned_cols=64 Identities=9% Similarity=-0.023 Sum_probs=49.9
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceee-hhhhhhhHhhhccChHHHHHHHHHHHHhcCcCch
Q 018359 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT-YMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (357)
Q Consensus 179 L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~-y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (357)
.-..|++.|+++-+...++..-.. .|. . .. .++.+|..+...+++.+|.+++..|+...|....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-~p~------~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-EPV------G--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CSS------T--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCC------c--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 345788999999988887755432 121 1 23 7889999999999999999999999999987653
No 39
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=86.68 E-value=4 Score=29.88 Aligned_cols=64 Identities=13% Similarity=-0.072 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
..+-.+|++.|+++-+...++..-.. .|. ....++.+|..++..++|.+|.++++.|+...|.+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITA-QPQ--------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 34567899999999998877644322 121 14568899999999999999999999999999876
No 40
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=86.42 E-value=14 Score=31.38 Aligned_cols=63 Identities=8% Similarity=-0.040 Sum_probs=42.7
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCccc------------eeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 184 FKLGTVHLCRSVIRSIETARIFDFEEFPKRD------------KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 184 fkl~~~~l~~nlik~i~~~~~p~~~~~~~~~------------~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...|+++-+...++.+-.. .|.- +... ...+.+.+|++++-+++|.+|...++.++...|.+.
T Consensus 107 ~~~~~~~~A~~~~~~~l~~-~P~~---~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 107 RDPQQARAAFSDFSKLVRG-YPNS---QYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp -CCHHHHHHHHHHHHHHTT-CTTC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred cCcHHHHHHHHHHHHHHHH-CcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 3456677776666655432 2321 1111 123447899999999999999999999999998654
No 41
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=86.37 E-value=4.8 Score=28.25 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+-.+|++.++++-+...++..-.. .|. .....+.+|..+...+++.+|.+++..|+...|.+.
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 35667889999999988877644322 121 135678999999999999999999999999888654
No 42
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=86.28 E-value=5.5 Score=28.92 Aligned_cols=88 Identities=11% Similarity=-0.067 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.+.....-.+ ......+-.+|++.|+++.+...++..-.. .|. .....+..|..+
T Consensus 19 ~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~ 82 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPD--------WGKGYSRKAAAL 82 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 3455666666665442221 113345667889999999998887755432 121 235678899999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+.+..|+...|.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999888654
No 43
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=86.12 E-value=2.2 Score=31.01 Aligned_cols=90 Identities=7% Similarity=-0.095 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-. .... ...+-.+|++.|+++.+...++..-.. .| ........+.+|..+
T Consensus 21 ~~~~A~~~~~~a~~~~~~----~~~~---~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~------~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 21 NYTESIDLFEKAIQLDPE----ESKY---WLMKGKALYNLERYEEAVDCYNYVINV-IE------DEYNKDVWAAKADAL 86 (112)
T ss_dssp CHHHHHHHHHHHHHHCCC----CHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHT-SC------CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcC----CHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh-Cc------ccchHHHHHHHHHHH
Confidence 345555555555443221 1222 235667889999999998877755432 12 112345788999999
Q ss_pred hhc-cChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFN-ENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~-~~~~~A~~~L~~A~~~c~~~~ 250 (357)
... +++.+|.+++..+....|.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999 999999999999999888653
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=86.02 E-value=13 Score=33.71 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++...+...+ ...........+-.+|++.|+++-+...++..-.. .|. .-.........+.+|.++
T Consensus 202 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~--~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQ--LKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHh--CcCchHHHHHHHHHHHHH
Confidence 34555666666665554332 23455556678888999999999998877744321 111 112345577888999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcC
Q 018359 227 VFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
...+++.+|.+++..|+...+..
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999877643
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=85.98 E-value=8.9 Score=33.33 Aligned_cols=97 Identities=9% Similarity=-0.027 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|...+.++...+... ............+-.+|++.|+++-+...++..-.. .|. .-.........+.+|.++.
T Consensus 199 ~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~--~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQ--LKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHh--hcchhHHHHHHHHHHHHHH
Confidence 345555555555544332 123444556677888999999999998887754321 111 1123455677889999999
Q ss_pred hccChHHHHHHHHHHHHhcCc
Q 018359 228 FNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~ 248 (357)
..+++.+|.+++..|+...+.
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999987653
No 46
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=85.71 E-value=2.8 Score=31.84 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=51.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 179 L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+-..|++.|+++-+...++.+-.. .|. . .......|.+|..++..++|.+|.+.+..++...|.+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-~p~---~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-YPN---G--VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CSS---S--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-CCC---C--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 446788999999999888866543 221 1 12235788999999999999999999999999888653
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=85.53 E-value=7.1 Score=32.87 Aligned_cols=103 Identities=12% Similarity=0.027 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCC-----------------
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEE----------------- 209 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~----------------- 209 (357)
..++|...+.++....-.+.............+-.+|.+.|+++-+...++..-.. .|.-+.
T Consensus 53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CchhHHHHHHhHHHHHHHHHHHH
Confidence 34555566666655544332223333445567778888999998888777654431 011000
Q ss_pred -CCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 210 -FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 210 -~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
....+.....+.+|.+++..+++.+|.+++..|+...|.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 173 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA 173 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH
Confidence 01223456788999999999999999999999999988654
No 48
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=85.10 E-value=3.3 Score=34.17 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.+.... |+ .....+ ..+=.+|+++|+++-+-..++..-.. .|. -...+|.+|..+
T Consensus 51 ~~~eA~~~~~~al~~---~P-~~~~~~---~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~--------~~~~~~~lg~~~ 114 (151)
T 3gyz_A 51 RIEEAEVFFRFLCIY---DF-YNVDYI---MGLAAIYQIKEQFQQAADLYAVAFAL-GKN--------DYTPVFHTGQCQ 114 (151)
T ss_dssp CHHHHHHHHHHHHHH---CT-TCHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHH-SSS--------CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CC-CCHHHH---HHHHHHHHHHccHHHHHHHHHHHHhh-CCC--------CcHHHHHHHHHH
Confidence 455566665555433 21 122222 24567899999999988877644322 121 234689999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCchH
Q 018359 227 VFNENFPAADQKLSYALINCNPQSEA 252 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (357)
...+++.+|.++|..|+..+|.+..+
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~~~ 140 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEKLK 140 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999876543
No 49
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=85.05 E-value=3.4 Score=37.02 Aligned_cols=96 Identities=10% Similarity=-0.056 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hccCCCCCCCCCccceeehhhhhhhHh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i-~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
.++|...+.++.......+........+.+.+-.+|+++|+++-+-..++.. +-.. . .-........+|.+|.++
T Consensus 171 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~--~--~~~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 171 LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC--R--INSMALIGQLYYQRGECL 246 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H--TTBCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH--h--cCcHHHHHHHHHHHHHHH
Confidence 4455566666654433222222222256678889999999999998877643 3211 1 011223466789999999
Q ss_pred hhccChHHH-HHHHHHHHHhcC
Q 018359 227 VFNENFPAA-DQKLSYALINCN 247 (357)
Q Consensus 227 ~~~~~~~~A-~~~L~~A~~~c~ 247 (357)
.-.+++.+| .+++..|+..+.
T Consensus 247 ~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 247 RKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHH
Confidence 999999999 899999998764
No 50
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=84.82 E-value=20 Score=31.56 Aligned_cols=92 Identities=11% Similarity=-0.034 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-. ...........+-.+|++.|+++-+...++..-.. .|. ....++.+|.++
T Consensus 249 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~ 316 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEPS---VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPD--------NVNALKDRAEAY 316 (359)
T ss_dssp CHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 455666666666554322 12223333456778999999999999888865432 121 245788999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+++..|+...|.+.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999988654
No 51
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=84.66 E-value=3.4 Score=30.78 Aligned_cols=92 Identities=13% Similarity=0.060 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-. .. .....+-.+|++.|+++.+...+...-.. .|.. .-.........|.+|..+
T Consensus 19 ~~~~A~~~~~~a~~~~~~----~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPT----NM---TYITNQAAVYFEKGDYNKCRELCEKAIEV-GREN-REDYRQIAKAYARIGNSY 89 (131)
T ss_dssp CHHHHHHHHHHHHHHCTT----CH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHS-TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCc----cH---HHHHHHHHHHHHhccHHHHHHHHHHHHhh-cccc-chhHHHHHHHHHHHHHHH
Confidence 445566666666554222 12 23346677899999999998877754332 1110 001112256788999999
Q ss_pred hhccChHHHHHHHHHHHHhcC
Q 018359 227 VFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~ 247 (357)
...+++.+|.+++..|+...|
T Consensus 90 ~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC
T ss_pred HHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999877
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=84.63 E-value=12 Score=29.40 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-.+ . .....+-.+|++.|+++.+...++..-.. .|. .....+.+|..+
T Consensus 57 ~~~~A~~~~~~~~~~~~~~----~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~ 120 (186)
T 3as5_A 57 AVDRGTELLERSLADAPDN----V---KVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPI--------NFNVRFRLGVAL 120 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCC----H---HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcH--------hHHHHHHHHHHH
Confidence 3455556666665442221 1 12345667889999999999888765433 121 235678899999
Q ss_pred hhccChHHHHHHHHHHHHhcCcC
Q 018359 227 VFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
...+++.+|.+.+..|+...|.+
T Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 121 DNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCcHHHHHHHHHHHHhcCccc
Confidence 99999999999999999988754
No 53
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=84.44 E-value=9.2 Score=28.10 Aligned_cols=63 Identities=14% Similarity=0.008 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
..+-.+|++.|+++-+...++..-.. .|. .....+.+|.++...+++.+|.+.+..++...|.
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALEL-DPR--------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 45678899999999999888765432 121 1345677899999999999999999999988774
No 54
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=84.32 E-value=4.4 Score=33.71 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCC--------CCccceeehh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEE--------FPKRDKVTYM 219 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~--------~~~~~~v~y~ 219 (357)
.++|...+.++....-. ... ..+.+-.+|+++|+++-+...++..-.. .|.-.. .-.......+
T Consensus 53 ~~~A~~~~~~al~~~~~----~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKH----LAV---AYFQRGMLYYQTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVL 124 (213)
T ss_dssp HHHHHHHHHHHHHHCTT----CHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHH
T ss_pred HHHHHHHHHHHHHhCcc----chH---HHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHH
Confidence 44555555555443211 122 2346678899999999998887754332 121110 0122344678
Q ss_pred hhhhhHhhhccChHHHHHHHHHHHHhcCcCchHHHHHHHHH
Q 018359 220 YYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKY 260 (357)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~r~IL~~ 260 (357)
|.+|..+...+++.+|.+.+..|+...|..........+..
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 165 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMEC 165 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHH
Confidence 99999999999999999999999999997655544444443
No 55
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=84.14 E-value=3.3 Score=31.23 Aligned_cols=65 Identities=12% Similarity=-0.015 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
...+-.+|++.|+++-+...++..-.. .|. ....+|.+|.++...+++.+|...+..|+...|..
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDF-DPT--------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 345667899999999998887754322 121 24467899999999999999999999999988743
No 56
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=84.09 E-value=4 Score=29.47 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=48.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
.+-.+|++.|+++-+...++..-.. .|. .....+.+|..+...++|.+|.+.++.|+...|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL-DPE--------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4556789999999998887754332 121 1346788999999999999999999999998876
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=84.03 E-value=7.5 Score=33.28 Aligned_cols=62 Identities=10% Similarity=-0.112 Sum_probs=30.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 179 L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
+-.+|++.|+++-+...++..-.. .|. ....++.+|.+++..+++.+|.+.+..|+...|..
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLEL-DPT--------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc-Ccc--------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 344555555555555544433221 111 12345555555555566666666666665555543
No 58
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=83.99 E-value=5.7 Score=29.72 Aligned_cols=65 Identities=8% Similarity=-0.187 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+-.+|++.++++.+...+...-.. .| . -....+.+|.++...+++.+|.+.+..|+...|...
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~-~~------~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 84 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKR-NP------K--DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI 84 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTT-CT------T--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-CC------C--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch
Confidence 35566889999999998888755432 12 1 146788999999999999999999999999877543
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=83.92 E-value=8.8 Score=32.57 Aligned_cols=30 Identities=10% Similarity=-0.024 Sum_probs=14.8
Q ss_pred hhhhhhhHhhhccChHHHHHHHHHHHHhcC
Q 018359 218 YMYYTGRLEVFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (357)
..+.+|.++...+++.+|.+++..|+...|
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 334445555555555555555555554444
No 60
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=83.90 E-value=5.5 Score=28.90 Aligned_cols=64 Identities=3% Similarity=-0.190 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
..+-..|++.|+++-+...+...-.. .|. -....+.+|..+...+++.+|.+.+..|+...|..
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL-DPH--------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 35567888999999998888765432 121 14578899999999999999999999999987754
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=83.73 E-value=10 Score=34.82 Aligned_cols=98 Identities=12% Similarity=0.023 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++........ ...........+-.+|.+.|+++-+...++..-.. .|. .-........++.+|.++
T Consensus 238 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~--~~~~~~~~~~~~~la~~~ 313 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL-AVE--LGEREVEAQSCYSLGNTY 313 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-HHH--cCCHHHHHHHHHHHHHHH
Confidence 34555666666655544321 23344556678889999999999998888644321 111 112335567788999999
Q ss_pred hhccChHHHHHHHHHHHHhcCc
Q 018359 227 VFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
...+++.+|.++++.|+..++.
T Consensus 314 ~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 314 TLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 62
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=83.59 E-value=2.4 Score=38.11 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhc-c-CCCCCCCCCccceeehhhhhhh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIET-A-RIFDFEEFPKRDKVTYMYYTGR 224 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~-~-~~p~~~~~~~~~~v~y~YY~Gr 224 (357)
..++|...+.++....... ....+...+.+.+-.+|+++|+++.+...++..-. . ..|. .....+..+|.+|.
T Consensus 130 ~~~~Ai~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~ 204 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTG-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAK 204 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCC-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHH
Confidence 3456666666666633322 22345666788999999999999998877764432 1 1211 34566778999999
Q ss_pred HhhhccChHHHHHHHHHHHHhcCcC
Q 018359 225 LEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
++.-.++|.+|.+++..|+..++..
T Consensus 205 ~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 205 ALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987643
No 63
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.25 E-value=5.2 Score=37.33 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..+.+.....++....... .+.....-+...|-++|+..|++.-+..++..+.... .. .-.+.+.+.+....|+++
T Consensus 110 ~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 110 SLDDQIFVCEKSIEFAKRE-KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF-KK--LDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHS-SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TT--SSCSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH-Hh--cccchhHHHHHHHHHHHH
Confidence 3445555555554443322 2233344566788999999999999999988765421 11 124678899999999999
Q ss_pred hhccChHHHHHHHHHHHHhcC
Q 018359 227 VFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~ 247 (357)
...++|.+|...++.|....+
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhh
Confidence 999999999999999997654
No 64
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=83.19 E-value=8.1 Score=29.29 Aligned_cols=85 Identities=8% Similarity=-0.116 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-.+ . .+-..+-.+|+++|+++-+...++..-.. .|. ....+|.+|..+
T Consensus 19 ~~~~A~~~~~~al~~~p~~----~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~ 82 (126)
T 3upv_A 19 DWPNAVKAYTEMIKRAPED----A---RGYSNRAAALAKLMSFPEAIADCNKAIEK-DPN--------FVRAYIRKATAQ 82 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC----h---HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHH
Confidence 4556666666665543221 1 23346677899999999998777644322 121 245688999999
Q ss_pred hhccChHHHHHHHHHHHHhcC
Q 018359 227 VFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~ 247 (357)
...++|.+|.+++..|+...|
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCc
Confidence 999999999999999999983
No 65
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=83.16 E-value=6.5 Score=29.98 Aligned_cols=65 Identities=9% Similarity=-0.226 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+-..|++.|+++.+...++..-.. .|. ....++.+|..++..++|.+|..++..|+...|...
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITR-NPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhh-CcC--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence 35567889999999999888754332 121 246789999999999999999999999999887643
No 66
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=83.03 E-value=24 Score=32.52 Aligned_cols=97 Identities=8% Similarity=-0.059 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhc-cCCCCCCCCCccceeehhhhhhhH
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIET-ARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~-~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
..++|...+.++...+... ..........+.+-.+|++.|+++.+...++..-. .. . ...| .. ..-.+.+|.+
T Consensus 197 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~--~-~~~~-~~-~~~~~~la~~ 270 (378)
T 3q15_A 197 HYDKALPHLEAALELAMDI-QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR--E-KVPD-LL-PKVLFGLSWT 270 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H-HCGG-GH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--h-hCCh-hH-HHHHHHHHHH
Confidence 3455666666666555422 12335556677888999999999999887764432 10 0 0112 22 6678899999
Q ss_pred hhhccChHHHHHHHHHHHHhcCcC
Q 018359 226 EVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
+.-.+++.+|.+++..|+..++..
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998753
No 67
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=83.01 E-value=10 Score=27.93 Aligned_cols=67 Identities=9% Similarity=-0.140 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 174 ~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.....+-.+|++.|+++.+...++..-.. .|. .....+.+|.++...+++.+|.+.+..|+...|.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPA--------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 34446677889999999998887755432 121 14568899999999999999999999999987754
No 68
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=82.89 E-value=12 Score=30.47 Aligned_cols=96 Identities=9% Similarity=0.026 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccC-CCCCCCCCccceeehhhhhhhH
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETAR-IFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~-i~~~~-~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
.++|...+.++...+... +.........+.+-.+|...|+++-+...+.. ++-.. .++ .....+...+.+|.+
T Consensus 42 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~lg~~ 116 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKS-GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE----DPLAASANAYEVATV 116 (203)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc----cHHHHHHHHHHHHHH
Confidence 455556666665555433 22445556677888999999999998877764 33211 110 122456778899999
Q ss_pred hhhccChHHHHHHHHHHHHhcCc
Q 018359 226 EVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
+...+++.+|.+++..|+..++.
T Consensus 117 ~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 117 ALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=82.72 E-value=28 Score=31.61 Aligned_cols=124 Identities=12% Similarity=-0.020 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.+++.+.+.+........ ....+.....+.+-.+|+..|+++-+...++..-... +..............+.+|.++.
T Consensus 69 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 69 LTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI-NEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHH
Confidence 344445555554443322 1234555666788889999999998887776442210 00001001234456677999999
Q ss_pred hccChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCC
Q 018359 228 FNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPK 273 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~~~n~r~IL~~LIpv~LllG~~P~ 273 (357)
..+++.+|..++..|+..++.......-..+..+--+.+..|.+..
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998864332222233344444444566543
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=82.50 E-value=17 Score=29.60 Aligned_cols=89 Identities=8% Similarity=-0.045 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhc-CChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKL-GTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl-~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
.++|...+.++....-.+ .. ....+-.+|++. |+++-+...++.+-. .| ..| ......+.+|..+
T Consensus 58 ~~~A~~~~~~a~~~~~~~----~~---~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~---~~~--~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 58 NDKAQESFRQALSIKPDS----AE---INNNYGWFLCGRLNRPAESMAYFDKALA--DP---TYP--TPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHTTTCCHHHHHHHHHHHHT--ST---TCS--CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCC----hH---HHHHHHHHHHHhcCcHHHHHHHHHHHHc--Cc---CCc--chHHHHHHHHHHH
Confidence 455555666655442221 11 234567788999 999999888876543 11 111 2345678899999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+.+..++...|.+.
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~~~ 147 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQFP 147 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999887653
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=82.32 E-value=24 Score=30.51 Aligned_cols=121 Identities=12% Similarity=-0.029 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|...+.+....+... ............+-.+|+..|+++.+...++..-.. .|. .-.........+.+|.++.
T Consensus 159 ~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--~~~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKE--FGDKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHH--HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHh--cCChHHHHHHHHHHHHHHH
Confidence 556666666665543321 123444556667888999999999998877754321 011 1123345668899999999
Q ss_pred hccChHHHHHHHHHHHHhcCcCch-HHHHHHHHHHHHHHhhcCCCC
Q 018359 228 FNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILP 272 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~~-~n~r~IL~~LIpv~LllG~~P 272 (357)
..+++.+|.+.+..|+..++.... ...-.++..+.-+-...|++.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999998875432 223333333433333356543
No 72
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=82.16 E-value=16 Score=28.41 Aligned_cols=87 Identities=8% Similarity=-0.060 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|...+.+.....-. .. .+...+-.+|++.|+++.+...++..-.. .|. .....+.+|.++.
T Consensus 29 ~~~A~~~~~~al~~~~~----~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~~a~~~~ 92 (166)
T 1a17_A 29 YENAIKFYSQAIELNPS----NA---IYYGNRSLAYLRTECYGYALGDATRAIEL-DKK--------YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHHSTT----CH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC----Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHH
Confidence 45555555555443222 11 23335667889999999998877754432 121 1346789999999
Q ss_pred hccChHHHHHHHHHHHHhcCcCc
Q 018359 228 FNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+++.+|.+++..|+...|.+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999988654
No 73
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=82.02 E-value=4.5 Score=31.74 Aligned_cols=63 Identities=10% Similarity=-0.056 Sum_probs=49.5
Q ss_pred HHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+=..||+.|+++.+-..++ +++.. | .....++.+|..+...+++.+|.+.++.|+...|...
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~--p--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD--P--------ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--T--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--C--------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 34467899999999988776 44421 2 1246788999999999999999999999999888654
No 74
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=81.73 E-value=7.5 Score=30.56 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+-..|++.|+++-+...++..-.. .| +...+.+.+|..+...++|.+|..++..|+...|.+.
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCML-DH--------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh-CC--------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 4556789999999999888865432 12 1246788999999999999999999999999988665
No 75
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=81.47 E-value=23 Score=33.47 Aligned_cols=71 Identities=10% Similarity=-0.128 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 171 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 171 g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
....+.+.+-.+|+++++++-|...++..-.. -| +....+|.+|..+...++|.+|.++|+.|+...|.+.
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEI-DP--------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-Cc--------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 34455667888999999999988777644322 12 2356789999999999999999999999999988654
No 76
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=81.05 E-value=19 Score=30.36 Aligned_cols=68 Identities=6% Similarity=-0.072 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 173 ~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
......+-.+|++.|+++.+...++..-.. . | +.....+.+|.++...+++.+|.+.+..++...|..
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N------R--NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C------S--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C------c--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 344456778899999999999888765432 1 1 125667899999999999999999999999987744
No 77
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=81.05 E-value=7.4 Score=31.24 Aligned_cols=64 Identities=5% Similarity=-0.151 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
..+-.+|++.|+++-+...++..-.. .|. ....++.+|..++..++|.+|.+++..|+...|..
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSI-APA--------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCc--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 45667889999999998887754322 121 25678999999999999999999999999988765
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=80.72 E-value=3.5 Score=35.02 Aligned_cols=71 Identities=10% Similarity=-0.048 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
...+-.+|.++|+++-+...++..-.. .|. +.......+..++.+|..+...++|.+|.++++.|+...|.
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKA-VPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH-CCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 345778899999999999888755432 121 11112234467899999999999999999999999998886
No 79
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=80.70 E-value=14 Score=26.81 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-.+ . .....+-.+|++.|+++-+...++..-.. .|. .....+.+|..+
T Consensus 24 ~~~~A~~~~~~~~~~~~~~----~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~ 87 (125)
T 1na0_A 24 DYDEAIEYYQKALELDPNN----A---EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAY 87 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCc----H---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHH
Confidence 3455556666655442211 1 23446678899999999999888765432 121 134578899999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+.+..++...|.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999888554
No 80
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=80.34 E-value=7.4 Score=37.96 Aligned_cols=68 Identities=10% Similarity=-0.102 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 174 ~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+.+..+|.+.|+++.+...++.+-... | +....++.+|..+...+++.+|.+.+..|+...|.+.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLS-T--------NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C--------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 355678899999999999999998664331 2 1236788999999999999999999999999988764
No 81
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=80.24 E-value=37 Score=31.37 Aligned_cols=92 Identities=12% Similarity=-0.033 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-. ...........+-.+|.+.|+++-+...++..-.. .|. ....++.+|..+
T Consensus 272 ~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~--------~~~~~~~l~~~~ 339 (450)
T 2y4t_A 272 RYTDATSKYESVMKTEPS---IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPD--------NVNALKDRAEAY 339 (450)
T ss_dssp CHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 345666666666543222 12222345567788999999999998888765322 121 235688899999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+.+..|+...|.+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchH
Confidence 999999999999999999888654
No 82
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=80.15 E-value=22 Score=30.29 Aligned_cols=91 Identities=13% Similarity=0.044 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++...--.+ ....+ .+-.+|++.|+++-+...++..-.. |+ . ......-++.+|.++
T Consensus 18 ~~~~A~~~~~~~l~~~p~~---~~~~~----~l~~~~~~~~~~~~A~~~~~~a~~~--~~--~--~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNS---PYIYN----RRAVCYYELAKYDLAQKDIETYFSK--VN--A--TKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCC---STTHH----HHHHHHHHTTCHHHHHHHHHHHHTT--SC--T--TTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc---HHHHH----HHHHHHHHHhhHHHHHHHHHHHHhc--cC--c--hhHHHHHHHHHHHHH
Confidence 4556666666665432221 12222 3444889999999988877755431 21 0 111233468899999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+++..|+...|...
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~ 108 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRL 108 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHcccHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999888655
No 83
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=80.08 E-value=9.7 Score=31.22 Aligned_cols=59 Identities=14% Similarity=-0.031 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhc-cChHHHHHHHHHHHH
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN-ENFPAADQKLSYALI 244 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~-~~~~~A~~~L~~A~~ 244 (357)
..+-.+|++.|+++-+...++..-.. .|. .....+.+|.++... +++.+|.+.+..++.
T Consensus 46 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 46 LVRAEIYQYLKVNDKAQESFRQALSI-KPD--------SAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 34566777788877777766644322 111 123556778888777 888888888888877
No 84
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=79.46 E-value=9.5 Score=30.63 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+-..|++.|+++-+...++..-.. -|. -..+.+.+|..+...++|.+|.+.+..|+...|.+.
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVL-DHY--------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc-Ccc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 35667889999999999888755432 121 245678999999999999999999999999988665
No 85
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=79.38 E-value=4.7 Score=36.08 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccC-CCCCCCCCccceeehhhhhhh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETAR-IFDFEEFPKRDKVTYMYYTGR 224 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik-~i~~~~-~p~~~~~~~~~~v~y~YY~Gr 224 (357)
..++|...+.+++...... ...++...+.+.+-.+|++.|+++.+...+. +++-.. .|. .....+..+|.+|.
T Consensus 130 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~----~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTG-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAK 204 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCS-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc----cccchHHHHHhHHH
Confidence 4456667777776654432 2344566677889999999999999988776 442211 221 11122368899999
Q ss_pred HhhhccChHHHHHHHHHHHHhcC
Q 018359 225 LEVFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~ 247 (357)
.+...++|.+|.+++..|+..++
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 86
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=79.05 E-value=20 Score=29.73 Aligned_cols=87 Identities=11% Similarity=-0.021 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-.+ .. ....+-.+|++.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 106 ~~~~A~~~~~~~~~~~~~~----~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~ 169 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMEN----GD---LFYMLGTVLVKLEQPKLALPYLQRAVEL-NEN--------DTEARFQFGMCL 169 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCS----HH---HHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCC----HH---HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHH
Confidence 3455556666665543221 11 2335667788889988888877755432 121 134677888888
Q ss_pred hhccChHHHHHHHHHHHHhcCcC
Q 018359 227 VFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
...+++.+|.+.+..|+...|..
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 88899999999999888887754
No 87
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=79.02 E-value=23 Score=29.51 Aligned_cols=66 Identities=11% Similarity=-0.117 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 175 l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
....+-.+|++.|+++.+...++..-.. .|. ....++.+|..+...+++.+|.+.+..|+...|..
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKR-APE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-Ccc--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 3445667788888888888777755332 121 13567788888888888888888888888877654
No 88
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=78.68 E-value=11 Score=34.87 Aligned_cols=98 Identities=5% Similarity=-0.092 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hccCCCCCCCCCccceeehhhhhhhH
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i-~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
..++|...+.++....... ..........+.+-.+|+++|+++.+...++.. +-.. . .-.......-.+.+|.+
T Consensus 199 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~--~--~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 199 QYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE--E--SNILPSLPQAYFLITQI 273 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H--TTCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--h--hccchhHHHHHHHHHHH
Confidence 4556666666666555433 224455556677889999999999998877643 3111 0 01112336678899999
Q ss_pred hhhccChHHHHHHHHHHHHhcCcC
Q 018359 226 EVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
+...+++.+|.+++..|+..++..
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999988643
No 89
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=78.62 E-value=44 Score=32.25 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|.+.+.++....-. .. ...+.+..+|.+.|+++-+..+++.+-.. .|.... .....+...+.+|..+.
T Consensus 457 ~~~A~~~~~~~~~~~~~----~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQY----DP---LLLNELGVVAFNKSDMQTAINHFQNALLL-VKKTQS-NEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHHHHHHHHHCCC----CH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHSCC-CSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC----Ch---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-hhcccc-chhhHHHHHHHHHHHHH
Confidence 44555555555443222 12 23557888999999999999998866432 111101 11223567888999999
Q ss_pred hccChHHHHHHHHHHHHhcCcCc
Q 018359 228 FNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+++.+|.+.++.++...|.+.
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCH
T ss_pred HhcCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999887554
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=78.60 E-value=2.9 Score=33.79 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=32.3
Q ss_pred ceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+.....|.+|++|+-.++|.+|.++++.|+...|.+.
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~ 65 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP 65 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3445668999999999999999999999999988765
No 91
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=78.39 E-value=7.2 Score=30.20 Aligned_cols=63 Identities=13% Similarity=-0.102 Sum_probs=48.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 179 L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+-..|++.|+++-+...++..-.. .|. -...+|.+|.++...+++.+|...+..|+...|...
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~-~P~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK-EPE--------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 445678899998888877754332 121 245678999999999999999999999999888654
No 92
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=78.35 E-value=11 Score=28.61 Aligned_cols=64 Identities=11% Similarity=-0.103 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+=..|++.|+++-+...++..-.. .|. -...++.+|..++..++|.+|.++++.|+...|...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR-APE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 4456789999999998887744322 121 146789999999999999999999999999988654
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=78.27 E-value=14 Score=29.76 Aligned_cols=87 Identities=10% Similarity=0.089 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHH-HHhcCCh--hhHHHHHHHhhccCCCCCCCCCccceeehhhhhhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKI-YFKLGTV--HLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGR 224 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~ki-Yfkl~~~--~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr 224 (357)
.++|...+.++....-.+ .. ....+-.+ |++.|++ +-+...++..-.. .|. ....++.+|.
T Consensus 60 ~~~A~~~~~~al~~~p~~----~~---~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~la~ 123 (177)
T 2e2e_A 60 YSNSLLAYRQALQLRGEN----AE---LYAALATVLYYQASQHMTAQTRAMIDKALAL-DSN--------EITALMLLAS 123 (177)
T ss_dssp HHHHHHHHHHHHHHHCSC----HH---HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-CTT--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC----HH---HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-CCC--------cHHHHHHHHH
Confidence 445555555555443221 11 22344455 8899997 7777766644322 121 1356889999
Q ss_pred HhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 225 LEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
++...+++.+|..++..|+...|.+.
T Consensus 124 ~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999764
No 94
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=78.23 E-value=7.7 Score=28.67 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
..+-.+|++.|+++.+...++..-.. .|. .....+.+|..+...++|.+|...+..|+...|..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL-DPT--------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-CCc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 45667889999999999888755432 121 14677889999999999999999999999987743
No 95
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=78.11 E-value=6.1 Score=35.31 Aligned_cols=96 Identities=10% Similarity=-0.023 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
.++|.....++......-+........+.+.+-.+|+++|+++-|...+. +++-.. .. -........+|.+|.++
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~--~~--~~~~~~~~~~~~lg~~~ 246 (293)
T 3u3w_A 171 LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC--RI--NSMALIGQLYYQRGECL 246 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HT--TBCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--Hc--CcHHHHHHHHHHHHHHH
Confidence 34455555555443322112345566677789999999999999988766 333221 11 11234567889999999
Q ss_pred hhcc-ChHHHHHHHHHHHHhcC
Q 018359 227 VFNE-NFPAADQKLSYALINCN 247 (357)
Q Consensus 227 ~~~~-~~~~A~~~L~~A~~~c~ 247 (357)
...+ +|.+|.+++..|+..+.
T Consensus 247 ~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 247 RKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHH
Confidence 9998 57999999999997653
No 96
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=78.09 E-value=8.8 Score=30.20 Aligned_cols=65 Identities=12% Similarity=-0.050 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+-..|++.|+++-+...++.+-.. .| +.....+.+|..+...+++.+|.+.+..++...|...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 76 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDA-------DA--FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCT-------TS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-------Cc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 35566777888888877776644321 11 1245677788888888888888888888888777543
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=78.09 E-value=8.3 Score=32.66 Aligned_cols=67 Identities=10% Similarity=-0.037 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCch
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (357)
.+.+-.+|++.|+++-+...++..-.. .|. -+..++.+|.+++..+++.+|.+.+..|+..-|.+..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK-APN--------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 456778999999999998887744322 121 2467889999999999999999999999999887653
No 98
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=77.51 E-value=14 Score=26.73 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
..+-.+|++.|+++.+...++..-.. .|. .....+.+|..+...+++.+|...+..++...|.+
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-CcC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 35667899999999998888765432 121 23467889999999999999999999999987754
No 99
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.38 E-value=11 Score=28.67 Aligned_cols=69 Identities=12% Similarity=-0.030 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 175 l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
....+-..|++.|+++.+...++..-.. .|. ..+....++.+|..+...++|.+|.+.+..|+...|.+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL-DAT-----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-ccc-----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 3446677899999999999888765432 111 12346778899999999999999999999999987754
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=77.37 E-value=12 Score=30.77 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=52.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+=..|++.|+++-+...++..-.. .| .-..+++.+|..+...++|.+|.+++..|+...|.+.
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~-~P--------~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIY-DF--------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 4556789999999999998865432 12 1245788999999999999999999999999998765
No 101
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=77.21 E-value=2.7 Score=34.26 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=23.4
Q ss_pred eeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
..+-++-+|..+.-+++|.+|.++++.|+...|.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~ 38 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN 38 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34445666777777777777777777777766654
No 102
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=77.14 E-value=3.3 Score=33.71 Aligned_cols=63 Identities=11% Similarity=-0.104 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
..+-.+|+++|+++-+-..++..-.. .| +....++.+|.++...+++.+|.++++.|+..-|.
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~~l~~-~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 111 YKLGLVYDSMGEHDKAIEAYEKTISI-KP--------GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHh-cc--------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 35567899999999998877654322 12 12356889999999999999999999999987664
No 103
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=77.11 E-value=18 Score=33.40 Aligned_cols=95 Identities=14% Similarity=-0.007 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhhhCCC---C-----chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeeh
Q 018359 147 KLKAAGSFLMKVFGVLAGKG---S-----KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTY 218 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~---s-----Kk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y 218 (357)
..++|...+.++....-.+. . .+.......+.+-.+|+++|+++-+...++..-.. .|. .+..
T Consensus 162 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a 232 (336)
T 1p5q_A 162 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-DSN--------NEKG 232 (336)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHH
T ss_pred CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------cHHH
Confidence 45566666666655543331 0 11112334457778999999999998877754322 121 2457
Q ss_pred hhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+|.+|..++..++|.+|..+|..|+...|.+.
T Consensus 233 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 233 LSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 89999999999999999999999999988654
No 104
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=76.94 E-value=2.5 Score=40.03 Aligned_cols=115 Identities=7% Similarity=-0.032 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|-+++.+... .++ ..+-+-..-.+..+|.++|++++++.+++.+...+ |+ ...-.+.+....-.|-+.
T Consensus 115 ~~eeAL~~l~~~i~---~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-~d--~~~~~d~~l~~Laea~v~ 186 (310)
T 3mv2_B 115 DLDKSLETCVEGID---NDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI-ED--TVSGDNEMILNLAESYIK 186 (310)
T ss_dssp CHHHHHHHHHHHHT---SSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CH--HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---cCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cc--ccccchHHHHHHHHHHHH
Confidence 45666666666521 111 13555566688899999999999999999987541 10 001134555555667778
Q ss_pred hhcc--ChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCChH
Q 018359 227 VFNE--NFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDW 275 (357)
Q Consensus 227 ~~~~--~~~~A~~~L~~A~~~c~~~~~~n~r~IL~~LIpv~LllG~~P~~~ 275 (357)
+..+ ++.+|+..++.+...+|. .+.-..++. +.+.+|++|..+
T Consensus 187 l~~g~~~~q~A~~~f~El~~~~p~--~~~~~lLln----~~~~~g~~~eAe 231 (310)
T 3mv2_B 187 FATNKETATSNFYYYEELSQTFPT--WKTQLGLLN----LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHTCSTTTHHHHHHHHHHTTSCS--HHHHHHHHH----HHHHHTCHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHhCCC--cccHHHHHH----HHHHcCCHHHHH
Confidence 8887 999999999999888874 122222233 777889999765
No 105
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=76.62 E-value=13 Score=28.88 Aligned_cols=66 Identities=11% Similarity=-0.119 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+-..|++.|+++.+...++..-.. .|. .....+.+|..+...++|.+|.+.+..|+...|...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 81 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL-NPS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 81 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 345667889999999998887754332 121 145688899999999999999999999999988654
No 106
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=76.51 E-value=9.1 Score=33.58 Aligned_cols=94 Identities=16% Similarity=0.043 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhhCCC--CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhH
Q 018359 148 LKAAGSFLMKVFGVLAGKG--SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~--sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
.++|...+.++........ ............+-.+|.+.|+++-+...++..-.. .|. ....++.+|.+
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~ 279 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQ--------NASTYSAIGYI 279 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-Ccc--------chHHHHHHHHH
Confidence 3455555666655443211 100111123346777899999999999888755432 121 35578899999
Q ss_pred hhhccChHHHHHHHHHHHHhcCcCc
Q 018359 226 EVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+...+++.+|.+++..|+...|.+.
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred HHHhccHHHHHHHHHHHHccCCCch
Confidence 9999999999999999999988654
No 107
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=76.48 E-value=20 Score=34.75 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCC----hhhHHHHHHHhhccCCCCCCCCCccceeehhhh
Q 018359 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGT----VHLCRSVIRSIETARIFDFEEFPKRDKVTYMYY 221 (357)
Q Consensus 146 ~~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~----~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY 221 (357)
...++|...+.++....-. --...+.++..+.+.||+.++ ++-+...++..-.. .|. ..+....++.
T Consensus 193 g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~~~~ 263 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVL---DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-DRK-----ASSNPDLHLN 263 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-CGG-----GGGCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-CCC-----cccCHHHHHH
Confidence 3556666666666554322 244556677777777777765 66666555533321 110 2355678899
Q ss_pred hhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 222 TGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 222 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+|..+...++|.+|.+++..|+..-|...
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999988654
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=76.25 E-value=20 Score=26.13 Aligned_cols=64 Identities=14% Similarity=0.009 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
..+-.+|++.|+++.+...++..-.. .|. .....+.+|.++...+++.+|.+.+..++...|..
T Consensus 39 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 39 YNLGNAYYKQGDYDEAIEYYQKALEL-DPR--------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH-CCC--------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 35677889999999999888765432 121 13456788999999999999999999999887754
No 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=76.16 E-value=22 Score=34.49 Aligned_cols=95 Identities=15% Similarity=0.015 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCC--------chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeeh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGS--------KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTY 218 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~s--------Kk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y 218 (357)
..++|.....++....-.+.. .......+-+.+-.+|+++++++-|...++..-.. .|. .+..
T Consensus 283 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a 353 (457)
T 1kt0_A 283 KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-DSA--------NEKG 353 (457)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHH
T ss_pred CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCc--------cHHH
Confidence 455666666666554433310 11122344457778999999999988777644322 121 2567
Q ss_pred hhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+|.+|..++..++|.+|..+|+.|+...|.+.
T Consensus 354 ~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 89999999999999999999999999988654
No 110
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=75.78 E-value=5.3 Score=34.78 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=52.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+-..|++.|+++-+...++.+-.. .|. ......-+|++|..++..++|.+|.+.++.++...|.+.
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~-~p~-----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTY-GRT-----HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGG-CSC-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh-CCC-----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 3445788999999999999876543 221 112356789999999999999999999999999988653
No 111
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=75.51 E-value=14 Score=31.48 Aligned_cols=71 Identities=13% Similarity=-0.056 Sum_probs=49.2
Q ss_pred HHHHHHHhcCC---hhhHHHHHH-Hhhcc-CCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCch
Q 018359 178 QLFKIYFKLGT---VHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (357)
Q Consensus 178 ~L~kiYfkl~~---~~l~~nlik-~i~~~-~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (357)
.+-.+|+.+++ .+.+...+. +++.. ..|+. .....+..++++|.++...+++.+|.+++..|+...|.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK---YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG---GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence 45677888887 554444443 22221 11221 13446678899999999999999999999999999987653
No 112
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=75.48 E-value=27 Score=29.18 Aligned_cols=89 Identities=4% Similarity=-0.156 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-. .....++ .+-.+|+++|+++-+...++..-.. .| . ....++.+|.++
T Consensus 22 ~~~~A~~~~~~al~~~~~---~~~~~~~---~~~~~~~~~~~~~~A~~~~~~al~~-~p------~--~~~~~~~l~~~~ 86 (228)
T 4i17_A 22 NYAVAFEKYSEYLKLTNN---QDSVTAY---NCGVCADNIKKYKEAADYFDIAIKK-NY------N--LANAYIGKSAAY 86 (228)
T ss_dssp CHHHHHHHHHHHHHHTTT---CCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHT-TC------S--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCC---CCcHHHH---HHHHHHHHhhcHHHHHHHHHHHHHh-Cc------c--hHHHHHHHHHHH
Confidence 456666666666555331 1122222 2677899999999998877644322 12 1 345688999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+.+..|+...|.+.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcH
Confidence 999999999999999999988765
No 113
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=74.68 E-value=7.7 Score=30.23 Aligned_cols=63 Identities=13% Similarity=0.020 Sum_probs=49.0
Q ss_pred HHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.|=..||+.|+++-+-..++ +++- .|. -+.+++.+|..++..++|.+|.+.++.|+...|...
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~--------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPS--------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 45567899999998887776 4442 121 256788899999999999999999999999877543
No 114
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.41 E-value=17 Score=32.45 Aligned_cols=100 Identities=9% Similarity=-0.090 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|.....++......++. ........+.+-.+|.++|+++-+-..++..-.. .|... ...-....+++-+|.++.
T Consensus 134 ~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~-~~~~~~~~~~~~lg~~~~ 210 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNR-LSQWSLKDYFLKKGLCQL 210 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCT-TTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCC-cccHHHHHHHHHHHHHHH
Confidence 45555666666555443322 2233445667788999999999998887755432 12110 001112235667899999
Q ss_pred hccChHHHHHHHHHHHHhcCcCc
Q 018359 228 FNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
-.+++.+|.++++.|+...|...
T Consensus 211 ~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 211 AATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HTTCHHHHHHHHHGGGCC-----
T ss_pred HcCCHHHHHHHHHHHHhhCCCCC
Confidence 99999999999999998877543
No 115
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=74.36 E-value=26 Score=30.45 Aligned_cols=89 Identities=11% Similarity=-0.020 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhH
Q 018359 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 146 ~~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
...++|...+.++....-.+ ......+-.+|.+.|+++-+...++..-.. .|. .....+.+|.+
T Consensus 152 ~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~ 215 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVEL-RPD--------DAQLWNKLGAT 215 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHH
Confidence 35566666666665543221 123446677889999999998888755432 121 23467889999
Q ss_pred hhhccChHHHHHHHHHHHHhcCcCc
Q 018359 226 EVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+...+++.+|.+.++.|+...|...
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~ 240 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYV 240 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999888653
No 116
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=74.29 E-value=24 Score=31.55 Aligned_cols=30 Identities=13% Similarity=-0.151 Sum_probs=15.2
Q ss_pred hhhhhhhHhhhccChHHHHHHHHHHHHhcC
Q 018359 218 YMYYTGRLEVFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (357)
.++.+|.++...+++.+|.+.++.|+...|
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344455555555555555555555555444
No 117
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=74.16 E-value=28 Score=31.12 Aligned_cols=65 Identities=11% Similarity=-0.139 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.+.+-.+|.+.|+++-+...++..-.. .| +....++.+|.++...+++.+|.+++..|+...|..
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~-~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALEL-QP--------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345667777888888777776654322 11 223567788888888888888888888888877654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=74.04 E-value=49 Score=29.57 Aligned_cols=131 Identities=12% Similarity=-0.005 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 171 GALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 171 g~~~l~n~L~kiYfkl~~~~l~~nlik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
+.....+.+-.+|.+ |+++-+-..++ +++-. |... ........++-+|.++.-.++|.+|.+++..|+..+|..
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENEE--RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhCC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 344455667778888 99988866555 44321 1111 122345667788999999999999999999999988754
Q ss_pred ch-HHHHHHHHHHHHHHhhcCCCCChH-hhccc----Cc------cccHHHHHHHhhCCHHHHHHHHHHh
Q 018359 250 SE-ANIRMILKYLIPVKLSIGILPKDW-LLEKY----NL------VEYSNIVQALRRGDLRLLRHALEEH 307 (357)
Q Consensus 250 ~~-~n~r~IL~~LIpv~LllG~~P~~~-lL~~~----~l------~~y~~l~~avr~Gnl~~f~~~l~~~ 307 (357)
.. ......+.-+.-+.+-+|.+.... .+++. .. .....+..++..||...|.+ +.++
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~-~~~~ 257 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLR-VCRS 257 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHHHTTCHHHHHH-HTTS
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCHHHHHH-HHhC
Confidence 32 222223333444444456543322 12221 11 12467788899999999988 4433
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=73.91 E-value=7.8 Score=32.10 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 175 l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
....+-.+|++.|+++-+...++..-.. .| +....++.+|.++...++|.+|.+.++.|+..+|.+.
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINR-DK--------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc--------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 4456777899999999998877754322 12 1245678899999999999999999999999888654
No 120
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=73.88 E-value=12 Score=33.92 Aligned_cols=91 Identities=10% Similarity=-0.040 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhH
Q 018359 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 146 ~~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
...++|...+.++....-. ..... ..+.+-.+|.+.|+++-+...++..-.. .|. ....++.+|..
T Consensus 191 g~~~~A~~~~~~al~~~p~--~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~ 256 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGD--MIDPD---LQTGLGVLFHLSGEFNRAIDAFNAALTV-RPE--------DYSLWNRLGAT 256 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCS--SCCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcC--ccCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHH
Confidence 4677777777777665222 11112 2235567778888888887777654322 121 13356778888
Q ss_pred hhhccChHHHHHHHHHHHHhcCcCc
Q 018359 226 EVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+...+++.+|.+++..|+...|...
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCch
Confidence 8888888888888888888777653
No 121
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=73.70 E-value=14 Score=30.70 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=40.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.+-.+|++.|+++.+...++..-.. .| ......+.+|.++...+++.+|.+.+..++...|.+
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 124 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALEL-DS--------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CC--------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 4556677777777777766654322 11 123455667777777777777777777777776654
No 122
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=73.01 E-value=6.5 Score=29.19 Aligned_cols=35 Identities=9% Similarity=-0.126 Sum_probs=31.5
Q ss_pred eehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+|.+|..++..++|.+|.++|+.|+...|...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 41 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV 41 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 45688999999999999999999999999988655
No 123
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=72.81 E-value=18 Score=34.43 Aligned_cols=60 Identities=7% Similarity=-0.190 Sum_probs=27.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcC
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (357)
.+-.+|++.|+++-+...++..-.. .| . ....+.+|..+...+++.+|.+.+..|+...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~-~~------~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL-HP------T---PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CC------C---HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc-CC------C---chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 3444555556655555555433221 01 1 22344445555555555555555555554444
No 124
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=72.68 E-value=26 Score=28.80 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCcc--------ceeehhhhhhhHhhhccChHHHHHHHHHHHHhcC
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKR--------DKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~--------~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (357)
...+-..|++.++++.+...++..-.. .|....+... -.+..++.+|..++..++|.+|..++..|+...|
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDF-FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 345566889999999998887754322 1211111100 0136788999999999999999999999999887
Q ss_pred cCc
Q 018359 248 PQS 250 (357)
Q Consensus 248 ~~~ 250 (357)
...
T Consensus 120 ~~~ 122 (198)
T 2fbn_A 120 NNV 122 (198)
T ss_dssp TCH
T ss_pred ccH
Confidence 553
No 125
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=72.35 E-value=3.4 Score=31.54 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=37.6
Q ss_pred hhhhhhHhhhccChHHHHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcCCC
Q 018359 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQS--EANIRMILKYLIPVKLSIGIL 271 (357)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~~n~r~IL~~LIpv~LllG~~ 271 (357)
.|-+|+.++-+++|..|..+|..|+..-+... .-.+..|+.+|.-+-.-+|.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH
Confidence 57899999999999999999999998754322 123445666665554445554
No 126
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=71.40 E-value=12 Score=28.27 Aligned_cols=76 Identities=13% Similarity=-0.004 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc--hHHHH
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS--EANIR 255 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~~n~r 255 (357)
.+=+.+|+.+.+..+..-++..-...-++ ..+.......++++|..+.-.+++.+|..++..|+..-|.+. ..|++
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~--~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEG--EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhcc--CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34567889999999887776432210011 112234556679999999999999999999999999988664 34555
No 127
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=70.93 E-value=7.4 Score=27.19 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=31.3
Q ss_pred eeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.....+.+|..+...++|.+|..++..|+...|.+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 43 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 43 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 345678899999999999999999999999887653
No 128
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=70.84 E-value=36 Score=33.21 Aligned_cols=95 Identities=13% Similarity=-0.032 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhhhCC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hcc--CCCCCCCCCccceeehhhhh
Q 018359 147 KLKAAGSFLMKVFGVLAGK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETA--RIFDFEEFPKRDKVTYMYYT 222 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D-~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i-~~~--~~p~~~~~~~~~~v~y~YY~ 222 (357)
..++|.....++...-..- +.....+.-..|.|..+|...|+++-+..+.+.. +.. .+++ .-.+..+-++-+
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~Hp~~a~~l~nL 388 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----YSLNVASMWLKL 388 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----SCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----CChHHHHHHHHH
Confidence 4566666666666543322 2467788899999999999999999888777633 211 1221 234566777889
Q ss_pred hhHhhhccChHHHHHHHHHHHHh
Q 018359 223 GRLEVFNENFPAADQKLSYALIN 245 (357)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~ 245 (357)
|.+|..+++|.+|...+..|+.-
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999963
No 129
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=69.75 E-value=36 Score=33.78 Aligned_cols=95 Identities=6% Similarity=-0.058 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhhCC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc--CCCCCCCCCccceeehhhhh
Q 018359 147 KLKAAGSFLMKVFGVLAGK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA--RIFDFEEFPKRDKVTYMYYT 222 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D-~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~-i~~~--~~p~~~~~~~~~~v~y~YY~ 222 (357)
+.++|.....++......- +.....+.-..|.|..+|...|+++-+..+.+. ++.. .+++ .-.+..+-++-+
T Consensus 324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~Hp~~a~~l~nL 399 (490)
T 3n71_A 324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH----NNAQLGMAVMRA 399 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT----TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 3455555555554443221 246778899999999999999999998887663 3321 1221 224567778889
Q ss_pred hhHhhhccChHHHHHHHHHHHHh
Q 018359 223 GRLEVFNENFPAADQKLSYALIN 245 (357)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~ 245 (357)
|.+|..+++|.+|...+..|+..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999963
No 130
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=69.68 E-value=16 Score=32.95 Aligned_cols=99 Identities=9% Similarity=0.034 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++......++ .........+.+-.+|.++|+++-+-..++..-.. .|... .......+.+-.|..+
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~--~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEE-RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM-YKEME--NYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTT--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHcC--ChhHHHHHHHHHHHHH
Confidence 45566666666655544332 23344556677888999999999988777644321 11111 1123344666778888
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+..+++.+|..++..|+ ..|...
T Consensus 206 ~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHcCCHHHHHHHHHHHh-CCCCCC
Confidence 88899999999999999 777543
No 131
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=67.85 E-value=41 Score=32.83 Aligned_cols=89 Identities=8% Similarity=-0.055 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhH
Q 018359 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 146 ~~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
...++|...+.++....-.+ ....+.+-.+|+++|+++-+...++..-.. .| +....+|.+|..
T Consensus 20 g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p--------~~~~~~~~lg~~ 83 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL-DK--------KYIKGYYRRAAS 83 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CT--------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHH
Confidence 35677777777776652221 223346677899999999998877644322 12 224578899999
Q ss_pred hhhccChHHHHHHHHHHHHhcCcCc
Q 018359 226 EVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+...++|.+|.+.++.|+...|.+.
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999988654
No 132
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=67.82 E-value=6.3 Score=35.81 Aligned_cols=97 Identities=12% Similarity=-0.056 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhhhCCC---CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhh
Q 018359 147 KLKAAGSFLMKVFGVLAGKG---SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTG 223 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~---sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~G 223 (357)
..++|...+.++....-.+. ....|...+.+.+-.+|.+.|+++-+...++..-.. .| .......++.+|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p------~~~~~~~~~~l~ 220 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-NG------DMIDPDLQTGLG 220 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH-SC------SSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-Cc------CccCHHHHHHHH
Confidence 34555556666554322211 112244556667788999999999999888866433 12 222345678899
Q ss_pred hHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 224 RLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 224 r~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.++...+++.+|.+.+..|+...|.+.
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 247 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDY 247 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999988764
No 133
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=67.24 E-value=44 Score=28.91 Aligned_cols=85 Identities=12% Similarity=-0.057 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (357)
.++|...+.++....-.+ ......+-.+|++.|+++-+...++..-.. .|. .....+.+|.++.
T Consensus 188 ~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDD-------AQLWNKLGATLANGNRPQEALDAYNRALDI-NPG--------YVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHH
Confidence 345555555554432211 123456778899999999999888765332 121 2346788999999
Q ss_pred hccChHHHHHHHHHHHHhcCc
Q 018359 228 FNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~ 248 (357)
..+++.+|.+.+..|+...|.
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTT
T ss_pred HhccHHHHHHHHHHHHHhCCc
Confidence 999999999999999998876
No 134
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=66.76 E-value=27 Score=29.54 Aligned_cols=64 Identities=9% Similarity=-0.004 Sum_probs=51.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+-..|++.|+++-+...++..-.. -| +....++.+|..+.-.+++.+|...+..|+...|...
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKE-NP--------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-SS--------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 4566889999999999888755322 12 2245688999999999999999999999999999764
No 135
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=66.53 E-value=15 Score=31.29 Aligned_cols=63 Identities=8% Similarity=-0.068 Sum_probs=41.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+-.+|++.|+++-+...++..-.. .|. .. .+..+.+ +....+++.+|...+..++...|.+.
T Consensus 116 ~la~~~~~~g~~~~A~~~~~~a~~~-~~~------~~--~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (275)
T 1xnf_A 116 NRGIALYYGGRDKLAQDDLLAFYQD-DPN------DP--FRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQ 178 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT------CH--HHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-CCC------Ch--HHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcch
Confidence 3456888888888888877755432 121 11 2223333 44667899999999999998888664
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=66.30 E-value=27 Score=32.17 Aligned_cols=76 Identities=14% Similarity=0.041 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCC-------ccceeehhhhhhhHhhhccChHHHHHHHHHHHHhc
Q 018359 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 246 (357)
Q Consensus 174 ~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~-------~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (357)
...+.+-..|++.|+++.+...++..-.. .|....+. ....+..++.+|..++..++|.+|.++++.|+...
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW-LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34456677889999999998877744322 22211111 11126788999999999999999999999999998
Q ss_pred CcCc
Q 018359 247 NPQS 250 (357)
Q Consensus 247 ~~~~ 250 (357)
|.+.
T Consensus 227 p~~~ 230 (336)
T 1p5q_A 227 SNNE 230 (336)
T ss_dssp TTCH
T ss_pred CCcH
Confidence 8654
No 137
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=65.75 E-value=8.3 Score=29.17 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=33.5
Q ss_pred cceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 213 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+....++.+|.++...++|.+|.+++..|+...|.+.
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 61 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 34567889999999999999999999999999988663
No 138
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=65.51 E-value=5.1 Score=33.93 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=32.9
Q ss_pred ceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
++..+.||+|.-++..+||.+|.+++..+++.=|.+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 566799999999999999999999999999998844
No 139
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=65.36 E-value=22 Score=32.94 Aligned_cols=63 Identities=14% Similarity=-0.045 Sum_probs=32.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.+-..|++.|+++-+..+++.+-.. .|. .....+.+|..++..+++.+|.+.+..|+...|..
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDG-DPD--------NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4445555566666555555543221 111 13445555555555566666666666665555543
No 140
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=65.07 E-value=62 Score=27.22 Aligned_cols=65 Identities=8% Similarity=0.026 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccc-eeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRD-KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~-~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.+-.+|++.|++.-+...++.+-.. +|.+. ...-.|++|..+.-.+++.+|.+.+..+....|.+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRD-------YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-------STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH-------CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 3457899999999999888866432 23332 23568999999999999999999999888877754
No 141
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=64.92 E-value=33 Score=28.99 Aligned_cols=87 Identities=16% Similarity=0.007 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.+.... +++ ....+ ..+-.+|.+.|+++-+...++..-..+ +....++.+|..+
T Consensus 99 ~~~~A~~~~~~al~~---~P~-~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~la~~~ 161 (217)
T 2pl2_A 99 YLEQALSVLKDAERV---NPR-YAPLH---LQRGLVYALLGERDKAEASLKQALALE----------DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHHHHHHHHHHH---CTT-CHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---Ccc-cHHHH---HHHHHHHHHcCChHHHHHHHHHHHhcc----------cchHHHHHHHHHH
Confidence 455666666555443 211 22222 356678999999999888777543221 2345678999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|...++.|+..-|.+.
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999887654
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=64.85 E-value=9.2 Score=29.75 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=28.6
Q ss_pred hhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..-+|..++-+++|.+|.++++.|+...|.+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~ 42 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI 42 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 34589999999999999999999999999764
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=64.70 E-value=11 Score=33.82 Aligned_cols=87 Identities=14% Similarity=0.020 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.+.....-. ... +...+-.+|+++|+++-+...++..-.. .| +-...+|.+|..+
T Consensus 19 ~~~~A~~~~~~al~~~p~----~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPL----VAV---YYTNRALCYLKMQQPEQALADCRRALEL-DG--------QSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHHCSC----CHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTS-CT--------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc----cHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHH
Confidence 345555555555443211 122 2336667899999999998877754322 12 2246788999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcC
Q 018359 227 VFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
...+++.+|...+..|+...|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999988854
No 144
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=63.47 E-value=27 Score=32.79 Aligned_cols=64 Identities=11% Similarity=-0.060 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcC
Q 018359 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 174 ~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (357)
.....+-.+|++.|+++-+...++..-.. . |. ...++.+|..+...+++.+|.+.+..++...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 301 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F------PR---VNSYIYMALIMADRNDSTEYYNYFDKALKLDS 301 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C------CC---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C------cc---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc
Confidence 33445555666666666666555543221 0 11 33344444444444444444444444444443
No 145
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=62.81 E-value=52 Score=31.89 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=58.5
Q ss_pred CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhc---cCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHH
Q 018359 167 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIET---ARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 243 (357)
Q Consensus 167 sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~---~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~ 243 (357)
.....+.-..|.|..+|...|+++-+..+.+..-. ..+++ .-.+..+-++-+|.+|..+++|.+|...+..|+
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 56778899999999999999999988777663321 11332 124566777889999999999999999999999
Q ss_pred H
Q 018359 244 I 244 (357)
Q Consensus 244 ~ 244 (357)
.
T Consensus 399 ~ 399 (429)
T 3qwp_A 399 D 399 (429)
T ss_dssp H
T ss_pred H
Confidence 6
No 146
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=62.54 E-value=13 Score=26.93 Aligned_cols=34 Identities=6% Similarity=-0.125 Sum_probs=29.7
Q ss_pred ehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.-++.+|..++..++|.+|.++++.|+...|.+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 38 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP 38 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 3467899999999999999999999999988653
No 147
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=61.88 E-value=43 Score=30.39 Aligned_cols=31 Identities=13% Similarity=-0.099 Sum_probs=16.3
Q ss_pred hhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 218 YMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
.++.+|..+.-.+++.+|.+.+..|+...|.
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 99 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc
Confidence 3455555555555555555555555554443
No 148
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=61.76 E-value=42 Score=31.36 Aligned_cols=72 Identities=11% Similarity=-0.171 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhh---ccChHHHHHHHHHHHHhcCcCc
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF---NENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~---~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+-.+|++.|+++-+...++..-.. .|. .......+...+.+|..+.. .+++.+|.+.+..|+...|...
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIEL-ENK--LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-HHT--SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-hhc--cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 346678899999999998888755332 111 11122335578999999999 9999999999999999877543
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=61.10 E-value=31 Score=27.59 Aligned_cols=65 Identities=8% Similarity=-0.101 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhH-hhhccCh--HHHHHHHHHHHHhcCcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL-EVFNENF--PAADQKLSYALINCNPQS 250 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~-~~~~~~~--~~A~~~L~~A~~~c~~~~ 250 (357)
..+-.+|++.|+++-+...++..-.. .|. -....+.+|.. +...+++ .+|...+..|+...|.+.
T Consensus 48 ~~lg~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 115 (177)
T 2e2e_A 48 ALLGEYYLWQNDYSNSLLAYRQALQL-RGE--------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI 115 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-HCS--------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH
Confidence 45667899999999998887754332 121 14567888998 7888999 999999999999887553
No 150
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=60.24 E-value=61 Score=28.97 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCchHH
Q 018359 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEAN 253 (357)
Q Consensus 174 ~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n 253 (357)
.++...+.++...|+++-+..+++.+-.. .| +....++-+|..++-.+++.+|.+.|..|+..-|.+..-
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p--------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~- 236 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADK-CS--------PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET- 236 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHh-CC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-
Confidence 34444455555667787777777755432 22 134567778999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHhhcCCCCC--hHhhcc
Q 018359 254 IRMILKYLIPVKLSIGILPK--DWLLEK 279 (357)
Q Consensus 254 ~r~IL~~LIpv~LllG~~P~--~~lL~~ 279 (357)
+..++-+...+|+.+. ..++++
T Consensus 237 ----l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 237 ----LINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp ----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4445555556888654 244444
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=59.60 E-value=10 Score=29.29 Aligned_cols=86 Identities=14% Similarity=-0.070 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++... | ......++ .+-.+|.+.|+++-+...++..-.. .|. ....++.+|..+
T Consensus 32 ~~~~A~~~~~~al~~---~-P~~~~a~~---~lg~~~~~~g~~~~A~~~~~~al~l-~P~--------~~~~~~~la~~~ 95 (121)
T 1hxi_A 32 NLAEAALAFEAVCQK---E-PEREEAWR---SLGLTQAENEKDGLAIIALNHARML-DPK--------DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHHHHH---S-TTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH---C-CCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHH
Confidence 345555555555433 2 12233333 5666788999999988877644322 121 134679999999
Q ss_pred hhccChHHHHHHHHHHHHhcCc
Q 018359 227 VFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
...+++.+|..++..|+..-|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999987664
No 152
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=59.50 E-value=15 Score=27.33 Aligned_cols=35 Identities=26% Similarity=0.122 Sum_probs=30.8
Q ss_pred eehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+|.+|..++..+++.+|...+..|+...|...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 53 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS 53 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH
Confidence 35788999999999999999999999999877543
No 153
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=57.87 E-value=61 Score=29.23 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhhCCCCc-hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 148 LKAAGSFLMKVFGVLAGKGSK-RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~sK-k~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
.++|...+.+........... ..+.....+.+-.+|...|+++-+...++..-.. .|.. ...+.+..++.+|+++
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSY---QPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTS---CGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhcc---CcHHHHHHHHHHHHHH
Confidence 445555555555544322111 1344455566778999999999998877643321 1111 1123455677899999
Q ss_pred hhccChHHHHHHHHHHHHhcCc
Q 018359 227 VFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
...+++.+|..++..|....+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999987654
No 154
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=57.56 E-value=38 Score=30.82 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+.+-.+|++.|+++.+...++..-.. .|. ...-++.+|..+.-.+++.+|.+.+..|+..+|.+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL-QPH--------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-CSS--------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 346677888999998888877755332 121 122467889999999999999999999999888654
No 155
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=57.55 E-value=69 Score=30.89 Aligned_cols=78 Identities=14% Similarity=0.021 Sum_probs=54.3
Q ss_pred HHhhhCCCCchhHHHHHHHHHHHHHHhcCCh-hhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHH
Q 018359 159 FGVLAGKGSKRVGALYLTCQLFKIYFKLGTV-HLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237 (357)
Q Consensus 159 F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~-~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~ 237 (357)
+..+..+.......++ .+-++|++.|++ +-+...++..-.. .|. ....++.+|.++...+++.+|.+
T Consensus 91 l~~~~~~~~~~a~~~~---~lg~~~~~~g~~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 91 MEEVLGSAQVEAQALM---LKGKALNVTPDYSPEAEVLLSKAVKL-EPE--------LVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHTTCCCCHHHHH---HHHHHHTSSSSCCHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhccCchhHHHHH---HHHHHHHhccccHHHHHHHHHHHHhh-CCC--------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3334443333334433 455778999999 8887777644322 121 24578999999999999999999
Q ss_pred HHHHHHHhcCc
Q 018359 238 KLSYALINCNP 248 (357)
Q Consensus 238 ~L~~A~~~c~~ 248 (357)
++..|+...|.
T Consensus 159 ~~~~al~~~p~ 169 (474)
T 4abn_A 159 CFSGALTHCKN 169 (474)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHhhCCC
Confidence 99999998875
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=57.13 E-value=25 Score=27.92 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=50.0
Q ss_pred HHHHHHHhcCChhhHHHHHHH-hhccC-CCCCCC--CC-----ccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRS-IETAR-IFDFEE--FP-----KRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~-i~~~~-~p~~~~--~~-----~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
..=..||+.|++..+-..++. ++... .+..+. -+ ....+..++.+|..++..++|.+|..+++.|+...|.
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 444567788888877665553 33200 000000 01 3455678899999999999999999999999999886
Q ss_pred Cch
Q 018359 249 QSE 251 (357)
Q Consensus 249 ~~~ 251 (357)
...
T Consensus 96 ~~~ 98 (162)
T 3rkv_A 96 NEK 98 (162)
T ss_dssp CHH
T ss_pred chH
Confidence 653
No 157
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=56.96 E-value=26 Score=32.76 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhCCC--CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhH
Q 018359 148 LKAAGSFLMKVFGVLAGKG--SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 148 le~~a~~l~~~F~~~~~D~--sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
.++|.+.+.++......+. .-.......-+.+-.+|+.+|+++-+...+..+.... |.+......+...-....|..
T Consensus 67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~-~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC-EKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-HhcccccchhhHHHHHHHHHH
Confidence 3445555555544433211 1122223344567889999999999987766443210 111111112223334445644
Q ss_pred h--hhccChHHHHHHHHHHHHhcCcCc
Q 018359 226 E--VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 226 ~--~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+ +-.++|.+|.++++.|+...|.+.
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 4 445789999999999999988654
No 158
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=56.88 E-value=10 Score=35.24 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.+.+-.+|+++++++-+...++..-.. .| +.+..+|.+|+.++..++|.+|..+|..|+...|.+
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTE-EE--------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 346777899999999988776644322 12 224578999999999999999999999999887754
No 159
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=56.08 E-value=26 Score=29.45 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=45.6
Q ss_pred HHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhh----------------hhhHhhhccChHHHHHHHHHHHH
Q 018359 181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYY----------------TGRLEVFNENFPAADQKLSYALI 244 (357)
Q Consensus 181 kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY----------------~Gr~~~~~~~~~~A~~~L~~A~~ 244 (357)
..+++.|+++-+...++..-.. .| . ....+|+ +|..+.-.++|.+|...++.|+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~-~p------~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL-NI------D--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CH------H--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CC------C--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4677888888888877654322 11 1 1224556 99999999999999999999999
Q ss_pred hcCcCc
Q 018359 245 NCNPQS 250 (357)
Q Consensus 245 ~c~~~~ 250 (357)
..|.+.
T Consensus 83 ~~p~~~ 88 (208)
T 3urz_A 83 KAPNNV 88 (208)
T ss_dssp HCTTCH
T ss_pred HCCCCH
Confidence 988764
No 160
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=55.09 E-value=7.7 Score=29.32 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=30.6
Q ss_pred eeehhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
-++=.+++|..++.+++|.+|..+++..+..-|.
T Consensus 42 ~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 42 NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3556788999999999999999999999998887
No 161
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=53.38 E-value=31 Score=35.28 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+-.+|++.|+++-+...++..-.. .|. -...+|++|..++..++|.+|.++++.|+..-|.+.
T Consensus 438 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 501 (681)
T 2pzi_A 438 MEVRALLDLGDVAKATRKLDDLAER-VGW--------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL 501 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-HCC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhcc-Ccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 5667889999999998887754432 121 245789999999999999999999999999988765
No 162
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=52.99 E-value=11 Score=27.85 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=25.4
Q ss_pred hhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 222 TGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 222 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+|.-.+-++++.+|-.||..|+.-||+..
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 57777889999999999999999999643
No 163
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=50.40 E-value=1.1e+02 Score=29.91 Aligned_cols=31 Identities=3% Similarity=-0.204 Sum_probs=16.2
Q ss_pred hhhhhhhHhhhc---cChHHHHHHHHHHHHhcCc
Q 018359 218 YMYYTGRLEVFN---ENFPAADQKLSYALINCNP 248 (357)
Q Consensus 218 y~YY~Gr~~~~~---~~~~~A~~~L~~A~~~c~~ 248 (357)
.++.+|..+... +++.+|.+.+..|+...|.
T Consensus 127 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 344455555555 5555555555555555543
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=49.02 E-value=55 Score=31.54 Aligned_cols=77 Identities=10% Similarity=-0.093 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCC-------ccceeehhhhhhhHhhhccChHHHHHHHHHHHHh
Q 018359 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (357)
Q Consensus 173 ~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~-------~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (357)
....+.+=..|++.+++..+...++..-.. .|....+. ....+..++.+|..++..++|.+|..+++.|+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 334456667899999999998777643221 12211111 1123678889999999999999999999999999
Q ss_pred cCcCc
Q 018359 246 CNPQS 250 (357)
Q Consensus 246 c~~~~ 250 (357)
-|.+.
T Consensus 347 ~p~~~ 351 (457)
T 1kt0_A 347 DSANE 351 (457)
T ss_dssp STTCH
T ss_pred CCccH
Confidence 88654
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=48.86 E-value=44 Score=29.65 Aligned_cols=64 Identities=9% Similarity=-0.215 Sum_probs=50.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+-..|++.|+++-+...++..-.. .| +...+++.+|..+.-.++|.+|.+.++.|+..-|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITR-NP--------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CC--------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 4556789999999998888744322 12 1356888999999999999999999999999877554
No 166
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=46.09 E-value=69 Score=31.30 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
..+-.+|++.|+++-+...++..-.. .| +....++.+|..+...+++.+|.++++.|+...|.+
T Consensus 27 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 27 LMLADAELGMGDTTAGEMAVQRGLAL-HP--------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90 (568)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTT-ST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 34556777788888887776644322 11 124466778888888888888888888888877755
No 167
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=45.76 E-value=1.9e+02 Score=26.98 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
..+-.+|++.|+++-+...++..-.. .|. .....+.+|.++...+++.+|.+.+..|+...|.+.
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 378 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSL-NPE--------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP 378 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 45566777888888777777654332 121 124567778888888888888888888888777554
No 168
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=45.72 E-value=14 Score=26.69 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=23.1
Q ss_pred HhhhCC--CCchhHHH-HHHHHHHHHHHhcC
Q 018359 160 GVLAGK--GSKRVGAL-YLTCQLFKIYFKLG 187 (357)
Q Consensus 160 ~~~~~D--~sKk~g~~-~l~n~L~kiYfkl~ 187 (357)
..|..| ++-|||+| .++-.|+|.|.|+.
T Consensus 10 eicktdgipnikwgmyiafgekllksylkmk 40 (82)
T 3fbl_A 10 EICKTDGIPNIKWGMYIAFGEKLLKSYLKMK 40 (82)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 457788 48999998 57889999999984
No 169
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=43.43 E-value=17 Score=31.30 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=36.2
Q ss_pred CCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcC
Q 018359 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (357)
Q Consensus 208 ~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (357)
+.++..+..+-.+|.|-.++-+++|..|...+..|+..|-
T Consensus 55 ~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 55 ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999999999999998764
No 170
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=43.35 E-value=1.6e+02 Score=25.40 Aligned_cols=88 Identities=16% Similarity=0.059 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (357)
..++|...+.++....-.+ . .....+-.+|.+.|+++-+...++..-.. .|. .....+.+|.++
T Consensus 135 ~~~~A~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~ 198 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWD----A---ELRELRAECFIKEGEPRKAISDLKAASKL-KSD--------NTEAFYKISTLY 198 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSC--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc----h---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHH
Confidence 4456666666665543221 1 23456778899999999999888865432 121 235688999999
Q ss_pred hhccChHHHHHHHHHHHHhcCcCc
Q 018359 227 VFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
...+++.+|.+.+..|+...|...
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~~ 222 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDHK 222 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHcCCHHHHHHHHHHHHhhCccch
Confidence 999999999999999999888654
No 171
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=43.26 E-value=39 Score=23.96 Aligned_cols=32 Identities=16% Similarity=-0.099 Sum_probs=27.9
Q ss_pred hhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.|-.|..++..++|.+|.+.++.|+...|.+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 34 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGK 34 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 35679999999999999999999999888654
No 172
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=42.90 E-value=71 Score=30.25 Aligned_cols=32 Identities=6% Similarity=-0.171 Sum_probs=18.3
Q ss_pred hhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.+|++|.++...++|.+|...++.|+..-|.+
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 45555555555566666666666666555544
No 173
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=41.48 E-value=19 Score=28.05 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=24.6
Q ss_pred hhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 222 TGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 222 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
+|.-.+-++++..|-.||..|+.-||+.
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 5677788999999999999999999953
No 174
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=41.39 E-value=99 Score=32.18 Aligned_cols=32 Identities=13% Similarity=-0.138 Sum_probs=17.4
Q ss_pred hhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.++.+|..+...+++.+|.++++.|+...|..
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555555555433
No 175
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=40.24 E-value=1.1e+02 Score=25.92 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhH
Q 018359 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (357)
Q Consensus 146 ~~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (357)
..|++.-++..+++...-.+..+.|--|..+=.=+-.+..+++++-|+.+++..-+. -..| ....---+.+
T Consensus 33 ~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~----hKkF-----AKiwi~~AqF 103 (161)
T 4h7y_A 33 ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN----CKKF-----AFVHISFAQF 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH----CTTB-----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hHHH-----HHHHHHHHHH
Confidence 355666666666666655444445555544444444567889999999999977432 1133 2222333455
Q ss_pred hhhccChHHHHHHHHHHHHhcCcCc
Q 018359 226 EVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
-.-++++.+|.+-|..|+..||+..
T Consensus 104 EiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 104 ELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHcccHHHHHHHHHHHhccCCCcH
Confidence 5679999999999999999999654
No 176
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=40.23 E-value=25 Score=28.73 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=32.9
Q ss_pred ceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
++-.|.||+|.-+.--++|.+|..++...++.=|.+
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 677899999999999999999999999999988743
No 177
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=40.06 E-value=68 Score=33.43 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~-i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.+.|=.+|.+.|+++-+...++. ++- .|. ....++.+|..+...+++.+|.++++.|++..|...
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~--------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 77 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEV--FPE--------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 45677889999999999888764 442 122 245678999999999999999999999999988654
No 178
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=39.16 E-value=34 Score=31.99 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=36.4
Q ss_pred hhhhhHhhhccChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhh-cCCCCChHhhccc
Q 018359 220 YYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS-IGILPKDWLLEKY 280 (357)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~r~IL~~LIpv~Ll-lG~~P~~~lL~~~ 280 (357)
|=.|+.++.++++-+|+++.-.|+.+ |-=..++ .|.+|+..+|.+-
T Consensus 134 y~~~K~~l~~~~~ldAY~~vi~aLhh---------------~ArL~vie~G~~pe~tvw~qv 180 (290)
T 3c18_A 134 FQDGRNLFSRGNYYDAYTHVHHALHH---------------LARLSVLEKGAHPEVVVWEQA 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHHHHHHTTCCCCTTHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHH---------------HHHhheeccCCcCchhHHHHH
Confidence 33588899999999999999999987 1123334 6999999999873
No 179
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=33.62 E-value=98 Score=26.39 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=30.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhh----ccChHHHHHHHHHHHHh
Q 018359 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALIN 245 (357)
Q Consensus 179 L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~----~~~~~~A~~~L~~A~~~ 245 (357)
+=.+|++.++++-+...++..-... ...-.|.+|.++.. .+++.+|.+++..|...
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLK-----------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 3445666666666666555332210 01234556666666 66666666666666654
No 180
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=32.85 E-value=1.1e+02 Score=28.79 Aligned_cols=65 Identities=9% Similarity=-0.206 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 177 n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
+.+-.+|.++|+++-+-..++..-.. -| . -..-++++|.++...+++.+|.++++.|+..-|.+.
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~l-dP------~--~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQ-DA------K--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHH-CT------T--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh-Cc------c--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 34455667777777666555533211 11 1 234578999999999999999999999999988664
No 181
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=32.78 E-value=54 Score=26.32 Aligned_cols=34 Identities=9% Similarity=-0.329 Sum_probs=30.4
Q ss_pred eehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
...+|.+|..+...+++.+|..++..++..-|..
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 4677899999999999999999999999988753
No 182
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.65 E-value=1.4e+02 Score=26.49 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=43.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.+-.+|.+.|+++-+-..++. | .-...++-+|.+++..+++.+|.+.|..+....|..
T Consensus 106 ~la~~~~~~g~~~~Al~~l~~------~--------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 106 MAASIYFYDQNPDAALRTLHQ------G--------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHTT------C--------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHhC------C--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 445678888988888877654 1 223466778888889999999999999998887654
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=29.85 E-value=1.4e+02 Score=27.85 Aligned_cols=75 Identities=8% Similarity=-0.026 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhcc-C-CC---CCCC--CCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRSIETA-R-IF---DFEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~i~~~-~-~p---~~~~--~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
...+=..|++.++++.+...++..-.. . .| ..+. -........++.+|..++..++|.+|.++++.|+...|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 344556788888888887666533210 0 00 0000 012344677888999999999999999999999998875
Q ss_pred Cc
Q 018359 249 QS 250 (357)
Q Consensus 249 ~~ 250 (357)
..
T Consensus 306 ~~ 307 (370)
T 1ihg_A 306 NT 307 (370)
T ss_dssp CH
T ss_pred hH
Confidence 54
No 184
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=29.44 E-value=61 Score=26.74 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=33.1
Q ss_pred cceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 213 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
.++-.|.||++.=+.--++|.+|..+....++.-|.+
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4567899999999999999999999999999988844
No 185
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=29.41 E-value=1.1e+02 Score=24.32 Aligned_cols=61 Identities=11% Similarity=-0.053 Sum_probs=45.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHh
Q 018359 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (357)
Q Consensus 178 ~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (357)
.+-.+|.+.|+++-+...++.+-.. -| ......-++.+|.++...+++.+|..++..|+..
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~-~p------~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKV-NL------GAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-CT------TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHh-Cc------ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 5566789999999999888755432 12 2222345678899999999999999999988753
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=29.12 E-value=77 Score=30.78 Aligned_cols=60 Identities=12% Similarity=-0.091 Sum_probs=45.4
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 182 IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 182 iYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
.|++.|+++-+...++..-.. .|. ....++.+|..+...++|.+|.+.++.|+..-|...
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-NPS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 466778888887766633221 121 257788999999999999999999999999877654
No 187
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=27.69 E-value=36 Score=20.27 Aligned_cols=17 Identities=0% Similarity=0.108 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018359 147 KLKAAGSFLMKVFGVLA 163 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~ 163 (357)
.-|.||.+|+++|+.-+
T Consensus 4 ~Ee~aA~vIQrA~R~yl 20 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34789999999998644
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=24.81 E-value=81 Score=28.87 Aligned_cols=73 Identities=11% Similarity=-0.113 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCC---------ccceeehhhhhhhHhhhccChHHHHHHHHHHHHh
Q 018359 176 TCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFP---------KRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (357)
Q Consensus 176 ~n~L~kiYfkl~~~~l~~nlik~-i~~~~~p~~~~~~---------~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (357)
...+-..|++.+++..+...++. ++.. |....+. ..-....++.+|..++..++|.+|.++++.|+..
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33455667777777777765553 3211 1100000 0001136788999999999999999999999999
Q ss_pred cCcCc
Q 018359 246 CNPQS 250 (357)
Q Consensus 246 c~~~~ 250 (357)
.|.+.
T Consensus 260 ~p~~~ 264 (338)
T 2if4_A 260 EEKNP 264 (338)
T ss_dssp CTTCH
T ss_pred CCCCH
Confidence 88554
No 189
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=23.92 E-value=1.9e+02 Score=24.50 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHh----cCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhh
Q 018359 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFK----LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYT 222 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~~D~sKk~g~~~l~n~L~kiYfk----l~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~ 222 (357)
..++|...+.++... ++ ..+. ..+-.+|.+ .++++.+...++..-... ...-.|.+
T Consensus 129 ~~~~A~~~~~~a~~~--~~---~~a~----~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~l 188 (273)
T 1ouv_A 129 DFKKAVEYFTKACDL--ND---GDGC----TILGSLYDAGRGTPKDLKKALASYDKACDLK-----------DSPGCFNA 188 (273)
T ss_dssp CHHHHHHHHHHHHHT--TC---HHHH----HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--Cc---HHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHH
Confidence 445555555555432 11 1222 344556776 888888877776443211 13456889
Q ss_pred hhHhhh----ccChHHHHHHHHHHHHhcC
Q 018359 223 GRLEVF----NENFPAADQKLSYALINCN 247 (357)
Q Consensus 223 Gr~~~~----~~~~~~A~~~L~~A~~~c~ 247 (357)
|.++.. .+++.+|.++++.|...-|
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 999998 9999999999999998755
No 190
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=23.07 E-value=1.7e+02 Score=27.00 Aligned_cols=72 Identities=10% Similarity=-0.075 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcCc
Q 018359 171 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (357)
Q Consensus 171 g~~~l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (357)
....++..+.+++...+.++-+...++..-.. .| +.....+.+|.++...+++.+|.+.+..|+...|.+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEK-AP--------GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHH-CS--------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-Cc--------cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 34445556666677777777777776643221 11 1233467899999999999999999999999988765
Q ss_pred h
Q 018359 251 E 251 (357)
Q Consensus 251 ~ 251 (357)
.
T Consensus 282 ~ 282 (472)
T 4g1t_A 282 Y 282 (472)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.71 E-value=72 Score=26.63 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=32.5
Q ss_pred ceeehhhhhhhHhhhccChHHHHHHHHHHHHhcCcC
Q 018359 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (357)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (357)
++-.|.||++.=+.--++|.+|..+....++.-|.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 466799999999999999999999999999988844
No 192
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=21.50 E-value=71 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=17.3
Q ss_pred hhhhhhHhhhccChHHHHHHHHHHHHh
Q 018359 219 MYYTGRLEVFNENFPAADQKLSYALIN 245 (357)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (357)
.|.+|.++..++++.+|.++++.|...
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~ 47 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQ 47 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 456666666666666666666666653
No 193
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=20.57 E-value=57 Score=20.03 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018359 147 KLKAAGSFLMKVFGVLA 163 (357)
Q Consensus 147 ~le~~a~~l~~~F~~~~ 163 (357)
.=|.||.+|+++|+.=+
T Consensus 4 ~Ee~aA~vIQrA~R~yl 20 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHL 20 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34789999999998643
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=20.43 E-value=1.5e+02 Score=24.81 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=28.6
Q ss_pred ehhhhhhhHhhhccChHHHHHHHHHHHHhcCc
Q 018359 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (357)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (357)
....-.|..++-.++|.+|.+.++.|++..|.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~ 43 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHT 43 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 44566899999999999999999999999997
No 195
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=20.01 E-value=3.7e+02 Score=23.44 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccceeehhhhhhhHhhh---ccChHHHHHHHHHHHHhcCcCch
Q 018359 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF---NENFPAADQKLSYALINCNPQSE 251 (357)
Q Consensus 175 l~n~L~kiYfkl~~~~l~~nlik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~---~~~~~~A~~~L~~A~~~c~~~~~ 251 (357)
+-+.+...+.+.|+++-+..+++..-... |.. +..|.|...+- .+++.+|.+.++.|+..+|.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------p~~----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 204 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDA-------RTR----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 204 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTST-------TCC----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q ss_pred HHHHHHHHHH
Q 018359 252 ANIRMILKYL 261 (357)
Q Consensus 252 ~n~r~IL~~L 261 (357)
-....+-.+.
T Consensus 205 ~~~~~~~~~~ 214 (308)
T 2ond_A 205 YVLAYIDYLS 214 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Done!