Query 018360
Match_columns 357
No_of_seqs 124 out of 1118
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00946 2a69 he Auxin Efflux 100.0 3E-49 6.4E-54 374.2 31.7 312 7-356 3-321 (321)
2 PRK09903 putative transporter 100.0 3.1E-48 6.7E-53 365.8 33.4 304 8-357 3-312 (314)
3 COG0679 Predicted permeases [G 100.0 2E-46 4.3E-51 352.2 34.3 304 7-355 2-307 (311)
4 PF03547 Mem_trans: Membrane t 100.0 2.8E-46 6E-51 362.7 31.3 342 9-352 1-385 (385)
5 KOG2722 Predicted membrane pro 100.0 1.6E-34 3.5E-39 263.8 7.6 341 11-354 14-402 (408)
6 TIGR00841 bass bile acid trans 99.2 1.4E-10 3E-15 108.0 11.3 108 248-355 12-120 (286)
7 COG0385 Predicted Na+-dependen 98.7 1.8E-07 3.9E-12 86.7 13.7 109 247-355 41-150 (319)
8 TIGR00832 acr3 arsenical-resis 98.7 3E-07 6.5E-12 87.2 15.1 142 207-355 6-156 (328)
9 PF01758 SBF: Sodium Bile acid 98.7 1.5E-07 3.3E-12 82.1 11.5 106 250-355 4-111 (187)
10 PF13593 DUF4137: SBF-like CPA 98.1 2.5E-05 5.5E-10 73.6 10.9 140 211-355 1-146 (313)
11 COG0798 ACR3 Arsenite efflux p 97.4 0.0039 8.5E-08 58.2 13.3 144 204-355 11-164 (342)
12 PF05982 DUF897: Domain of unk 97.2 0.18 3.9E-06 47.3 21.8 253 16-302 1-265 (327)
13 COG3329 Predicted permease [Ge 97.2 0.19 4.1E-06 46.3 21.2 255 14-291 16-290 (372)
14 PF05684 DUF819: Protein of un 97.0 0.35 7.6E-06 46.9 27.2 81 10-91 21-107 (378)
15 TIGR00841 bass bile acid trans 97.0 0.013 2.8E-07 54.7 12.2 133 10-148 136-272 (286)
16 PRK10711 hypothetical protein; 96.1 0.17 3.8E-06 45.2 13.3 142 206-355 27-169 (231)
17 PRK04288 antiholin-like protei 96.1 0.29 6.2E-06 43.9 14.3 143 206-355 32-174 (232)
18 PF04172 LrgB: LrgB-like famil 96.0 0.24 5.3E-06 43.9 13.7 142 205-354 15-157 (215)
19 COG1346 LrgB Putative effector 96.0 0.25 5.4E-06 43.8 13.2 144 204-354 27-170 (230)
20 TIGR00659 conserved hypothetic 96.0 0.49 1.1E-05 42.2 15.2 142 206-354 26-167 (226)
21 COG0385 Predicted Na+-dependen 94.6 0.67 1.4E-05 43.6 12.2 127 13-144 166-297 (319)
22 PF03601 Cons_hypoth698: Conse 94.6 0.47 1E-05 44.6 11.2 142 208-357 24-171 (305)
23 TIGR00783 ccs citrate carrier 94.3 5 0.00011 38.3 21.5 103 31-133 6-119 (347)
24 PF13593 DUF4137: SBF-like CPA 93.5 1.7 3.6E-05 41.1 12.8 114 12-128 162-283 (313)
25 TIGR03082 Gneg_AbrB_dup membra 93.4 4.2 9E-05 34.2 13.8 59 291-353 95-154 (156)
26 PF03601 Cons_hypoth698: Conse 93.0 5.9 0.00013 37.3 15.6 212 10-274 86-301 (305)
27 PRK03659 glutathione-regulated 92.6 3.5 7.5E-05 42.7 14.6 137 210-354 237-375 (601)
28 PF03812 KdgT: 2-keto-3-deoxyg 92.4 2.4 5.3E-05 39.6 11.7 101 245-349 46-154 (314)
29 PRK03562 glutathione-regulated 92.2 4.6 9.9E-05 42.0 15.0 136 211-354 241-378 (621)
30 TIGR00783 ccs citrate carrier 91.9 0.91 2E-05 43.2 8.6 100 17-117 207-315 (347)
31 KOG2718 Na+-bile acid cotransp 91.3 0.27 6E-06 47.1 4.5 106 251-356 120-227 (371)
32 PRK03562 glutathione-regulated 87.8 9.2 0.0002 39.8 12.9 113 204-325 23-138 (621)
33 PF03390 2HCT: 2-hydroxycarbox 87.6 30 0.00065 33.9 26.7 228 30-263 74-323 (414)
34 KOG4821 Predicted Na+-dependen 87.1 1.3 2.8E-05 38.9 5.2 99 250-351 60-163 (287)
35 PRK10669 putative cation:proto 86.1 24 0.00052 36.1 14.7 137 210-354 248-386 (558)
36 KOG2532 Permease of the major 85.7 35 0.00077 34.1 15.3 38 205-242 251-289 (466)
37 PRK12460 2-keto-3-deoxyglucona 85.3 33 0.00072 32.3 14.5 127 213-354 169-302 (312)
38 TIGR00698 conserved hypothetic 85.2 11 0.00024 36.0 10.9 141 209-356 30-176 (335)
39 COG2855 Predicted membrane pro 84.3 6.1 0.00013 37.4 8.5 136 210-355 37-178 (334)
40 PF05684 DUF819: Protein of un 82.3 47 0.001 32.3 14.1 139 209-354 24-167 (378)
41 PF05145 AmoA: Putative ammoni 81.3 38 0.00082 32.0 12.9 58 294-355 76-134 (318)
42 PF05145 AmoA: Putative ammoni 78.6 61 0.0013 30.7 14.4 61 290-354 251-312 (318)
43 TIGR00844 c_cpa1 na(+)/h(+) an 78.1 61 0.0013 34.6 14.1 78 207-290 35-117 (810)
44 TIGR00932 2a37 transporter, mo 75.1 66 0.0014 29.3 14.3 90 203-301 9-101 (273)
45 PRK04972 putative transporter; 74.6 38 0.00083 34.7 11.5 113 6-121 4-140 (558)
46 COG5505 Predicted integral mem 73.1 84 0.0018 29.6 19.2 136 14-154 31-174 (384)
47 PLN03159 cation/H(+) antiporte 70.3 85 0.0018 34.0 13.3 153 198-357 55-224 (832)
48 COG3493 CitS Na+/citrate sympo 70.2 1.1E+02 0.0024 29.7 21.0 69 31-99 92-168 (438)
49 PRK12460 2-keto-3-deoxyglucona 67.9 55 0.0012 30.8 9.9 88 245-334 46-136 (312)
50 PRK05326 potassium/proton anti 66.3 83 0.0018 32.3 11.9 92 203-302 23-118 (562)
51 PRK03659 glutathione-regulated 65.9 1.3E+02 0.0028 31.2 13.3 115 204-326 23-139 (601)
52 PRK10669 putative cation:proto 61.3 1.8E+02 0.004 29.7 13.4 114 203-324 23-138 (558)
53 COG3180 AbrB Putative ammonia 60.4 1.6E+02 0.0035 28.2 15.0 78 272-353 87-165 (352)
54 COG3493 CitS Na+/citrate sympo 59.1 86 0.0019 30.4 9.4 100 16-116 292-400 (438)
55 TIGR00844 c_cpa1 na(+)/h(+) an 56.7 1.9E+02 0.0041 31.1 12.4 109 211-324 265-379 (810)
56 TIGR00793 kdgT 2-keto-3-deoxyg 55.7 76 0.0017 29.8 8.4 87 246-334 47-141 (314)
57 COG2855 Predicted membrane pro 55.7 1.9E+02 0.0041 27.5 17.2 44 232-276 270-313 (334)
58 TIGR00832 acr3 arsenical-resis 53.8 2E+02 0.0044 27.3 23.5 115 236-350 205-323 (328)
59 PRK05326 potassium/proton anti 50.9 1.8E+02 0.0039 29.8 11.2 136 210-353 244-388 (562)
60 PF10766 DUF2592: Protein of u 47.8 35 0.00076 21.4 3.3 23 204-226 5-27 (41)
61 COG2991 Uncharacterized protei 46.8 19 0.00042 25.8 2.4 38 5-45 2-39 (77)
62 TIGR00698 conserved hypothetic 46.1 2.7E+02 0.0059 26.6 19.6 63 211-279 251-314 (335)
63 PF03616 Glt_symporter: Sodium 42.0 3.3E+02 0.0071 26.3 24.3 70 83-153 108-180 (368)
64 COG1593 DctQ TRAP-type C4-dica 39.0 3.8E+02 0.0081 26.1 19.8 104 214-337 235-350 (379)
65 PRK03818 putative transporter; 37.6 4.7E+02 0.01 26.8 13.0 133 214-353 34-176 (552)
66 PRK04972 putative transporter; 35.9 5E+02 0.011 26.7 12.3 121 16-140 416-543 (558)
67 COG5546 Small integral membran 34.1 78 0.0017 22.9 3.8 37 209-245 8-47 (80)
68 PF06826 Asp-Al_Ex: Predicted 32.0 3.2E+02 0.0069 23.2 13.3 119 15-136 28-153 (169)
69 PRK01658 holin-like protein; V 31.4 96 0.0021 24.9 4.5 55 38-92 58-112 (122)
70 PF06826 Asp-Al_Ex: Predicted 27.8 3.8E+02 0.0082 22.8 13.5 132 216-355 29-167 (169)
71 TIGR03802 Asp_Ala_antiprt aspa 27.3 7E+02 0.015 25.7 13.1 120 15-139 420-547 (562)
72 PF00999 Na_H_Exchanger: Sodiu 26.2 40 0.00086 32.3 1.8 132 210-349 234-371 (380)
73 COG1380 Putative effector of m 26.0 1.2E+02 0.0026 24.7 4.1 58 31-89 53-110 (128)
74 PRK01821 hypothetical protein; 24.2 1.7E+02 0.0037 23.9 4.8 55 38-92 63-117 (133)
75 PRK05274 2-keto-3-deoxyglucona 22.6 1.6E+02 0.0034 28.0 5.0 128 215-354 178-310 (326)
76 PF03390 2HCT: 2-hydroxycarbox 22.3 7.6E+02 0.017 24.4 17.2 123 204-331 53-185 (414)
77 PF01733 Nucleoside_tran: Nucl 21.9 30 0.00065 32.4 0.0 24 271-294 211-234 (309)
78 PRK02975 putative common antig 21.8 1.2E+02 0.0027 29.1 3.9 40 24-63 136-178 (450)
79 PF07226 DUF1422: Protein of u 20.9 2.1E+02 0.0046 22.7 4.5 49 13-63 37-86 (117)
80 PRK06814 acylglycerophosphoeth 20.9 1.2E+03 0.025 26.0 18.2 23 202-224 215-237 (1140)
81 KOG1650 Predicted K+/H+-antipo 20.9 6.7E+02 0.014 27.0 9.7 114 37-153 302-422 (769)
82 PRK03818 putative transporter; 20.6 9.3E+02 0.02 24.7 13.5 118 15-136 405-531 (552)
83 COG2271 UhpC Sugar phosphate p 20.2 3.8E+02 0.0083 26.6 7.1 23 204-226 244-266 (448)
No 1
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=3e-49 Score=374.21 Aligned_cols=312 Identities=33% Similarity=0.477 Sum_probs=259.8
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCC--Cc-chHHHHHHHHHHHHHH
Q 018360 7 AYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPY--KM-NLKLIYADFLQKLLAF 83 (357)
Q Consensus 7 ~~~~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~--~~-~~~~~~~~~~~~~~~~ 83 (357)
++.++++++|+++++++||+++||+|++++|+.+.++++++|+++||++|+++.+.+.+ +. .+........+....+
T Consensus 3 ~~~~~~~ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (321)
T TIGR00946 3 TYVILETVLPILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSY 82 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999943479999999999999999999999999999987654 22 2333333444555667
Q ss_pred HHHHHHHH-hhcCCchhhHHHhhhccccccchhhhHHHHHHhcccch---hHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018360 84 LVLVALTK-ISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEA---ALLLAQIVVLQSLIWYNLLLFLFELNAAKS 159 (357)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 159 (357)
++++...| +.|+++.++....+ +++++|++|+|+|+++.+|||++ ..++..+++.+++..|++++.+.+..+.++
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (321)
T TIGR00946 83 ALIWLITKPLFKADYGKLSGFLL-VSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGG 161 (321)
T ss_pred HHHHHHHHHHHhcccchhhHHHH-HhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhccccccc
Confidence 78888888 56666555544445 48999999999999999999999 667777777788888999986654221100
Q ss_pred cCCCCCCCCCCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHH
Q 018360 160 ASVTPNPETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIID 239 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~ 239 (357)
+++ +.+.++..++.+|+.++||+++|+++|++++.+ |+++|+++.
T Consensus 162 -----------------~~~--------------~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~ 206 (321)
T TIGR00946 162 -----------------EGS--------------GESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLIL 206 (321)
T ss_pred -----------------ccc--------------chhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHH
Confidence 000 011122345678899999999999999999999 999999999
Q ss_pred HHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHH
Q 018360 240 QSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVP 319 (357)
Q Consensus 240 ~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~ 319 (357)
++++++|++++|++|+++|++++..+ .++++|..+..+..|+++.|++++.+...++.|++..+++++++|||+|.++
T Consensus 207 ~~l~~lg~~~~plaLl~lG~~l~~~~--~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~ 284 (321)
T TIGR00946 207 KSISILSGATTPMALFSLGLALSPRK--IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVA 284 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhh--hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHH
Confidence 99999999999999999999998654 3467788899999999999999999998999999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018360 320 FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLA 356 (357)
Q Consensus 320 ~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l~ 356 (357)
+++|++||.|+|++++.+++||++|++|+|+|++++|
T Consensus 285 ~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~~ 321 (321)
T TIGR00946 285 AVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321 (321)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999875
No 2
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=3.1e-48 Score=365.80 Aligned_cols=304 Identities=20% Similarity=0.303 Sum_probs=250.8
Q ss_pred HHHHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc--chHHHHHHHHHHHHHHHH
Q 018360 8 YHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM--NLKLIYADFLQKLLAFLV 85 (357)
Q Consensus 8 ~~~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 85 (357)
...+++++|+++++++||+++ |+|+++|++.+.+|++++|+++||++|+++.+.+.++. ++.......++.+..+++
T Consensus 3 ~~~~~~ilpif~ii~lG~~~~-r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (314)
T PRK09903 3 TFFIGDLLPIIVIMLLGYFSG-RRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFF 81 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 346788999999999999995 58999999999999999999999999999998765432 455555555666666777
Q ss_pred HHHHHH-hhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 018360 86 LVALTK-ISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE---AALLLAQIVVLQSLIWYNLLLFLFELNAAKSAS 161 (357)
Q Consensus 86 ~~~~~~-~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 161 (357)
++...| +.|+++.++....+. ++++|+||+|+|+++++||++ ++.++..+ ..+++.+|++|.+..+.++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~-~~~~~~~~~~g~~~~~~~~~~~-- 157 (314)
T PRK09903 82 SWFGCYKFFKRTHAEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAIIS-IIVNAITIPIGLYLLNPSSGAD-- 157 (314)
T ss_pred HHHHHHHHhcCCcchhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHHH-HHHHHHHHHHHHHHHccccccc--
Confidence 777665 445554444344454 788999999999999999999 45444444 4577889999998886432210
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHH
Q 018360 162 VTPNPETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQS 241 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~ 241 (357)
+ ++ +..++.+|+.++||+++|+++|+++++. |+++|++++++
T Consensus 158 ----------------~---------------~~---~~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~ 199 (314)
T PRK09903 158 ----------------G---------------KK---NSNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPT 199 (314)
T ss_pred ----------------c---------------cc---chHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHH
Confidence 0 00 0123557788999999999999999999 99999999999
Q ss_pred HHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHH
Q 018360 242 VRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFV 321 (357)
Q Consensus 242 l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i 321 (357)
++++|++++|++|+++|++|+..+. +. .++.+...+.|+++.|+++++....+++|++..+++++++|||+|.++++
T Consensus 200 l~~lg~~~~PlaL~~iG~~L~~~~~--~~-~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i 276 (314)
T PRK09903 200 FNLIAKANSGVAVFAAGLTLAAHKF--EF-SAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII 276 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc--cc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999999999988642 22 35667788899999999999888888999999999999999999999999
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018360 322 FAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357 (357)
Q Consensus 322 ~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l~~ 357 (357)
+|++||.|++.+++++++||++|++|+|+|++++.+
T Consensus 277 ~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~~~ 312 (314)
T PRK09903 277 IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRL 312 (314)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=2e-46 Score=352.25 Aligned_cols=304 Identities=24% Similarity=0.466 Sum_probs=266.5
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc-chHHHHHHHHHHHHHHHH
Q 018360 7 AYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM-NLKLIYADFLQKLLAFLV 85 (357)
Q Consensus 7 ~~~~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 85 (357)
+..+++.++|+++++++||+++ |.+.+++++.+.+|++++|+++||++|+++.+++.+.. ++..+...+.+++..++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~-r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK-RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999995 58999999999999999999999999999999988755 677777777777788888
Q ss_pred HHHHHHhhcCCchh-hHHHhhhccccccchhhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 018360 86 LVALTKISSRSGLR-WIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTP 164 (357)
Q Consensus 86 ~~~~~~~~~~~~~~-~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 164 (357)
.+.+.|+.++++.+ +....+ +++|+|++++|+|++..+|||+++.++++++..+++.+++.|.+.++..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~----- 154 (311)
T COG0679 81 LALIGRFLFKLDKRETVIFAL-ASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGT----- 154 (311)
T ss_pred HHHHHHHHhccchhhHHHHHH-HHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----
Confidence 88887776544444 333334 48999999999999999999999999999999999999999998887544320
Q ss_pred CCCCCCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHH
Q 018360 165 NPETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRI 244 (357)
Q Consensus 165 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~ 244 (357)
+ +..++..|+.++||+++|.++|++++.. ++++|+++.++.++
T Consensus 155 -----------------------------~----~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~ 197 (311)
T COG0679 155 -----------------------------N----KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDL 197 (311)
T ss_pred -----------------------------h----hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHH
Confidence 0 1345678899999999999999999999 99999999999999
Q ss_pred HHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHH
Q 018360 245 LSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAK 324 (357)
Q Consensus 245 lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~ 324 (357)
+|++++|++|+++|++|+... ..+.+.+........|+++.|+++++..+.++++++...++++++|||+|.+++++|+
T Consensus 198 l~~a~~pl~li~lG~~L~~~~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~ 276 (311)
T COG0679 198 LASAASPLALIALGLSLAFLK-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLAR 276 (311)
T ss_pred HHHhhhhHHHHHHhhhcchhh-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHH
Confidence 999999999999999999843 2334556666677779999999999999999999999999999999999999999999
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 325 EYNVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 325 ~~~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
+||.|++.+++++++||++|++++|.|.+.+
T Consensus 277 ~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 277 QYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888776
No 4
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=2.8e-46 Score=362.66 Aligned_cols=342 Identities=25% Similarity=0.411 Sum_probs=263.4
Q ss_pred HHHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcC-CCC-cchHHHHH-HHHHHHHHHHH
Q 018360 9 HVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNN-PYK-MNLKLIYA-DFLQKLLAFLV 85 (357)
Q Consensus 9 ~~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~ 85 (357)
+++++++|+++++++||+++| +|++++++.+.++++++|+++||++|++++++. .++ .+++++.. ..+..++.+++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 368899999999999999965 799999999999999999999999999999975 333 35544443 44556666777
Q ss_pred HHHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC--CC
Q 018360 86 LVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSAS--VT 163 (357)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~ 163 (357)
++++.|++|.++.++..... +++|+|++++|+|+++++||++++.|..+++.++++..|+++..+++..+++.+. .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 158 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVL-AASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE 158 (385)
T ss_pred HHHHHHhcCCCcccceEEEe-cccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence 88888877766555433333 5899999999999999999999999999999999999999999998865443211 11
Q ss_pred CCC------CCCCCc----ccch-hhhhhh--hh---------hh-------h-----hhh----cccccchhHHHHHHH
Q 018360 164 PNP------ETPEEH----DASQ-ESQAKE--GE---------EE-------A-----QNR----TATRVRTTHILLTVG 205 (357)
Q Consensus 164 ~~~------~~~~~~----~~~~-~~~~~e--~~---------~~-------~-----~~~----~~~~~~~~~~~~~~~ 205 (357)
+++ ++.|++ ++.+ .+.+++ ++ .+ + ++. .+.+...++..++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (385)
T PF03547_consen 159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSI 238 (385)
T ss_pred ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHHH
Confidence 000 000000 0000 000000 00 00 0 000 000011233445567
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHH
Q 018360 206 RKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIV 285 (357)
Q Consensus 206 ~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~ 285 (357)
++.++||+++|.++|+++++.+......+|+++.++++++|++++|++|+++|+.|+..++....+++.....++.|+++
T Consensus 239 ~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii 318 (385)
T PF03547_consen 239 LKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLII 318 (385)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHH
Confidence 88899999999999999999954444445599999999999999999999999999977544456777777789999999
Q ss_pred HHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 018360 286 GPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYY 352 (357)
Q Consensus 286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~ 352 (357)
.|++++++.+.++++++...++++++++|+|++.+++|++||.+++.+++.+++||+++++++|+|+
T Consensus 319 ~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 319 LPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999995
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=263.79 Aligned_cols=341 Identities=16% Similarity=0.139 Sum_probs=249.5
Q ss_pred HHhhHHHHHHHHHhhhhhh-hccccChhhhhHHHHHHHHHHhHHHHHHHHhhc-CCCCc-chHHHHHH-HHHHHHHHHHH
Q 018360 11 VAACVPLYVAMLLAYISVK-WWKLFTPDQCAGINKFVAKFSIPLLSFQVISKN-NPYKM-NLKLIYAD-FLQKLLAFLVL 86 (357)
Q Consensus 11 ~~~ilpi~lii~lG~~~~r-~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~-~~~~~-~~~~~~~~-~~~~~~~~~~~ 86 (357)
+..++.++++..+||++++ +.|+++++++|.+|++|+++|.||++|..+++. +.++. +|+++.+. .+.+.++.+++
T Consensus 14 v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG 93 (408)
T KOG2722|consen 14 VMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIG 93 (408)
T ss_pred cccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3578899999999999853 459999999999999999999999999999987 56654 78887775 47888889999
Q ss_pred HHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc-------------hhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 87 VALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE-------------AALLLAQIVVLQSLIWYNLLLFLFE 153 (357)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~-------------~~~~~~~~~~~~~~~~~~l~~~l~~ 153 (357)
|++.|++|.+++.+. ....+|+++|.|++++.++.++..++ |+.|+.+......+..|+.++.++.
T Consensus 94 ~lv~~I~rppp~~~~-fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~~ 172 (408)
T KOG2722|consen 94 WLVVKILRPPPQLRG-FIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRMLL 172 (408)
T ss_pred HHHhheecCChhhcC-eEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeeec
Confidence 999999987665543 34557999999999999999996333 3567777776777777887775443
Q ss_pred hhh-hhh-----cCCCCC----C-CCCCCcccchhhhh----hhhhhhhh--hhcccccchh-HHHHHHHHHHhhchhHH
Q 018360 154 LNA-AKS-----ASVTPN----P-ETPEEHDASQESQA----KEGEEEAQ--NRTATRVRTT-HILLTVGRKLIINPNTH 215 (357)
Q Consensus 154 ~~~-~~~-----~~~~~~----~-~~~~~~~~~~~~~~----~e~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~nP~~i 215 (357)
... +.. +..++- + +..+++++++++.+ +|++.++. .+.+.+++.. ...+..+ +-+.+||++
T Consensus 173 ~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~~~L-~~i~~Ppti 251 (408)
T KOG2722|consen 173 PPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEKVIL-KEIFAPPTI 251 (408)
T ss_pred CCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHHhhH-HHhcCchHH
Confidence 221 110 000000 0 00111111100000 01110000 0011111111 1222334 447999999
Q ss_pred HHHHHHHHHHhhhcc------CCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHH
Q 018360 216 ATLLGLIWASIEFRW------GVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPAL 289 (357)
Q Consensus 216 a~ilgli~~~~~~~~------~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli 289 (357)
|.++|++++..++.. +-++ ..+.+.++++|+.++|+.++++|+.|....+.+..+.|.++..++.|+++.|.+
T Consensus 252 a~iiA~vigai~pLr~lifg~~apl-~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~ 330 (408)
T KOG2722|consen 252 AAIIALVIGAIPPLRRLIFGEDAPL-RVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLV 330 (408)
T ss_pred HHHHHHHHhcchHHHHHhhccCchH-HHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchh
Confidence 999999999997421 2233 589999999999999999999999998876555567777888899999999999
Q ss_pred HHHHHHH---h---C-CchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 290 MAASSFA---I---G-LRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 290 ~~~~~~~---~---~-~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
.+++... + + .||....++++|.++|||.+.-.+|+.+|..+++.|.+.+|++.+..+.+.+|..+
T Consensus 331 gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~ 402 (408)
T KOG2722|consen 331 GLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVF 402 (408)
T ss_pred hHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9877432 2 2 57888999999999999999999999999999999999999999999999999765
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=99.19 E-value=1.4e-10 Score=107.99 Aligned_cols=108 Identities=12% Similarity=0.035 Sum_probs=95.0
Q ss_pred hHHHHHHHHhhhhhccCCc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHh
Q 018360 248 GGLGMAMFSLGLFMASRPS-IIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEY 326 (357)
Q Consensus 248 ~~~pl~L~~lG~~L~~~~~-~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~ 326 (357)
....++++.+|++++..+. ...++.|......+.|+++.|++++++...++.+++....+++.+++|++.++.++++++
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHh
Confidence 3377899999999987641 112344567778889999999999999888999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 327 NVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 327 ~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
|+|.+.+++.+.+||++|++++|+|..++
T Consensus 92 ~gn~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 KGDMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred CCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.75 E-value=1.8e-07 Score=86.73 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=96.2
Q ss_pred hhHHHHHHHHhhhhhccCC-cccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHH
Q 018360 247 NGGLGMAMFSLGLFMASRP-SIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKE 325 (357)
Q Consensus 247 ~~~~pl~L~~lG~~L~~~~-~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~ 325 (357)
.....+.+|..|.+|+... +...++||........-++++|++++++.+++++|++...-+++.+++|.++.+.+++..
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~l 120 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYL 120 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHH
Confidence 5556677777787776543 122367888999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 326 YNVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 326 ~~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
+|+|...+-....+||+++.++.|++..++
T Consensus 121 AkGnValsV~~tsvStll~~f~tPllv~l~ 150 (319)
T COG0385 121 AKGNVALSVCSTSVSTLLGPFLTPLLVGLL 150 (319)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875
No 8
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.73 E-value=3e-07 Score=87.21 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=107.7
Q ss_pred HHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHH-HHHhhHHH------HHHHHhhhhhccCC-cccccchHHHHHH
Q 018360 207 KLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVR-ILSNGGLG------MAMFSLGLFMASRP-SIIACGTRMAAVA 278 (357)
Q Consensus 207 ~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~-~lg~~~~p------l~L~~lG~~L~~~~-~~~~~~~~~~~~~ 278 (357)
|.+....+.+.++|++.+.. .|+.....-. .+.+...| ..|+.+|.++..++ +...+++|.....
T Consensus 6 ~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~ 78 (328)
T TIGR00832 6 RYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILS 78 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHH
Confidence 34555667788888888876 3332221111 11223333 35667667775543 1223567888889
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 279 MALKFIVGPALMAASSFAI-GLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 279 ~~~rli~~Pli~~~~~~~~-~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
....+++.|++++++.+.+ +.+++...-+++.+++|++..+.+++...|+|...+-+...++|+++.+++|.+.+++
T Consensus 79 ~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll 156 (328)
T TIGR00832 79 LFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLL 156 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 8899999999999999999999999999999999999999999999999999988765
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.71 E-value=1.5e-07 Score=82.14 Aligned_cols=106 Identities=19% Similarity=0.217 Sum_probs=84.7
Q ss_pred HHHHHHHhhhhhccCCc-ccccchHHHHHHHHHHHHHHHHHHHHHH-HHhCCchhhHHHhhhhhcCCcchHHHHHHHHhC
Q 018360 250 LGMAMFSLGLFMASRPS-IIACGTRMAAVAMALKFIVGPALMAASS-FAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYN 327 (357)
Q Consensus 250 ~pl~L~~lG~~L~~~~~-~~~~~~~~~~~~~~~rli~~Pli~~~~~-~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~ 327 (357)
....++..|.+++.++- ...++.|......+..+++.|++++++. ..++.++.....+++.+++|.+..+..++...|
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~ 83 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLAG 83 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHTT
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHhC
Confidence 45678888888876641 1123456667788999999999999998 788999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 328 VHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 328 ~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
+|.+++.+.+.++|+++.+++|++..++
T Consensus 84 Gd~~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 84 GDVALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccceeeHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=98.10 E-value=2.5e-05 Score=73.63 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=108.0
Q ss_pred chhHHHHHHHHHHHHhhhccCCCCcHHHHHHH--HHHHhhHHHHHHHHhhhhhccCCc-ccccchHHHHHHHHHHHHHHH
Q 018360 211 NPNTHATLLGLIWASIEFRWGVKLPAIIDQSV--RILSNGGLGMAMFSLGLFMASRPS-IIACGTRMAAVAMALKFIVGP 287 (357)
Q Consensus 211 nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l--~~lg~~~~pl~L~~lG~~L~~~~~-~~~~~~~~~~~~~~~rli~~P 287 (357)
|+.+++.++++.++..- +-|+.-.+.+ +...+..+.+..+.-|+++....- ...++||........-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~~-----P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLF-----PAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHHc-----CcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45667777777777762 2222221222 234455588899999999976531 223577888888999999999
Q ss_pred HHHHHHHHHhC--CchhhHHHhhhhhcCCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 288 ALMAASSFAIG--LRGTLFKIAFVQAALPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 288 li~~~~~~~~~--~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
++++++....+ .+++...-+++.+++|+.+.+ +++++..|+|+..+-....+|+++++++.|+|+.++
T Consensus 76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~ 146 (313)
T PF13593_consen 76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLL 146 (313)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 99999887763 577888888999999999766 689999999999999999999999999999998764
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.0039 Score=58.21 Aligned_cols=144 Identities=11% Similarity=0.085 Sum_probs=103.2
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHH--HHHhhHHHHHHHHhhhhh---ccCC----cccccchHH
Q 018360 204 VGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVR--ILSNGGLGMAMFSLGLFM---ASRP----SIIACGTRM 274 (357)
Q Consensus 204 ~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~--~lg~~~~pl~L~~lG~~L---~~~~----~~~~~~~~~ 274 (357)
.+.|.+.-=.++|+++|+.++.. .|+ +.+.++ ..++...|.+.-.+=+.- ...+ +.-..++|.
T Consensus 11 ~~dk~l~~wv~l~i~~Gi~lG~~-------~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~ 82 (342)
T COG0798 11 FLDKYLTLWVFLAIAIGILLGVH-------FPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKP 82 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------ccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchH
Confidence 34444443377888888887754 554 444444 455556665543332221 1111 011245677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018360 275 AAVAMALKFIVGPALMAASSFA-IGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYF 353 (357)
Q Consensus 275 ~~~~~~~rli~~Pli~~~~~~~-~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~ 353 (357)
.....+.-.++.|++++.+++. ++..|+...-+++....||-..+.+.++.-++|.|.++..+.++.++.++..|.+.+
T Consensus 83 L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~ 162 (342)
T COG0798 83 LILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGK 162 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999988755 466667777888899999999999999999999999999999999999999987766
Q ss_pred Hh
Q 018360 354 LL 355 (357)
Q Consensus 354 ~l 355 (357)
++
T Consensus 163 ~~ 164 (342)
T COG0798 163 FF 164 (342)
T ss_pred HH
Confidence 53
No 12
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=97.20 E-value=0.18 Score=47.26 Aligned_cols=253 Identities=15% Similarity=0.133 Sum_probs=124.3
Q ss_pred HHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHH---HhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 16 PLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQV---ISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKI 92 (357)
Q Consensus 16 pi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (357)
|..+...+|.+++. .| -|-+.-+.+.|..--.++=+.=++. +.+.++++ .+.......+..++.-++++.+-|.
T Consensus 1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~-~~~~~~~~~~lg~liPl~~~~iLr~ 77 (327)
T PF05982_consen 1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTA-LLLPLLAAVLLGILIPLIAFPILRR 77 (327)
T ss_pred CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888742 22 2334556666665556665655653 22222222 2233333333233334445555554
Q ss_pred -hcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCC
Q 018360 93 -SSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAAL---LLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPET 168 (357)
Q Consensus 93 -~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 168 (357)
.|.++.+.. +. ++-|+....--+....+...++++. |...+.......-.-++..+....+.++. ..++.
T Consensus 78 ~~~l~~~daa--Ai-AAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~---~~~~~ 151 (327)
T PF05982_consen 78 LGKLDRADAA--AI-AAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQA---AGATA 151 (327)
T ss_pred ccCCChhhHH--HH-HHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhcccc---ccccC
Confidence 455655542 33 3667777777777777776555544 33333333223333455555543322100 00000
Q ss_pred CCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCC-CcHHHHHHHHHHHh
Q 018360 169 PEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVK-LPAIIDQSVRILSN 247 (357)
Q Consensus 169 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~-lP~~i~~~l~~lg~ 247 (357)
+.+..+..++ +++ .+.++.+|..++|+-+...+-|+++++.....+.. +-.+..+.++
T Consensus 152 ~~~~~~~~~~-------------~~~----~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~---- 210 (327)
T PF05982_consen 152 SSTRVGAGSG-------------HEG----ISWGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFK---- 210 (327)
T ss_pred Cccccccccc-------------ccc----ccHHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHH----
Confidence 0000000000 001 13567889999999999999999999984222221 2223344443
Q ss_pred hHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHH----HHHHhCCchh
Q 018360 248 GGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAA----SSFAIGLRGT 302 (357)
Q Consensus 248 ~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~----~~~~~~~~~~ 302 (357)
...-+-|+-+|+.=+++ -+++|+.-+..+.==+++|++... +.++.|++.-
T Consensus 211 G~L~lFLLeMGl~A~~r----L~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~G 265 (327)
T PF05982_consen 211 GVLCLFLLEMGLVAARR----LRDLRKVGWFLIAFGILMPLINALIGIGLGWLLGLSPG 265 (327)
T ss_pred HHHHHHHHHhhHHHHHh----hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 33333444444444433 145666555555555667877543 3455676543
No 13
>COG3329 Predicted permease [General function prediction only]
Probab=97.18 E-value=0.19 Score=46.32 Aligned_cols=255 Identities=14% Similarity=0.159 Sum_probs=122.7
Q ss_pred hHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc---chHHHHHHHHHHHHHHHHHHHHH
Q 018360 14 CVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM---NLKLIYADFLQKLLAFLVLVALT 90 (357)
Q Consensus 14 ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (357)
.=|..+....|.++.- .| -|-+.-+.+.+-.-..++-|.=|+.-.+.+.+.. -........++.++.+..-+.+.
T Consensus 16 ~sP~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~ 93 (372)
T COG3329 16 LSPTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLR 93 (372)
T ss_pred ccchHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777788888631 11 1222334444443334455555554333322222 22223334455555554444455
Q ss_pred HhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 018360 91 KISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALL---LAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPE 167 (357)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 167 (357)
|+.|.+..++. +. ++.|+...---+.-+.....+.+..| +.....+..+.---.+..+.+.+-.+++..+..+.
T Consensus 94 kl~~vdtvdaa--A~-ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~aa~~ 170 (372)
T COG3329 94 KLPKVDTVDAA--AT-AGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAAAEA 170 (372)
T ss_pred HccccchHHHH--HH-HhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhcccccccccc
Confidence 55465555542 22 25666666666666666665555443 22111111111112233333322111111111121
Q ss_pred CCCC----------cc----cchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCC
Q 018360 168 TPEE----------HD----ASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVK 233 (357)
Q Consensus 168 ~~~~----------~~----~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~ 233 (357)
++++ .| |.+..+++++|++ + -..++..+..+.||-+...+.|+++++.. |-+
T Consensus 171 ~s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~-------~----v~~~ell~Esflnpal~lllggl~iGlit---Ge~ 236 (372)
T COG3329 171 HSKQLVAAGEYGDQTDLASSRQEYLSPQWGEDN-------R----VKIWELLQESFLNPALVLLLGGLAIGLIT---GEQ 236 (372)
T ss_pred ccccchhhcccCchhhhhhhhhhhcccccCccc-------c----hhhHHHHHHHHcCchHHHHHHHHHHhhee---ccC
Confidence 2221 01 0011111111110 1 12356678889999999999999999983 444
Q ss_pred CcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHH
Q 018360 234 LPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMA 291 (357)
Q Consensus 234 lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~ 291 (357)
=-+.+.++.+-+=+...-+-|+.+|+.-.++- .+.|+.-...+.==++.|++.-
T Consensus 237 g~~vl~~F~~~lFqGvL~lflL~MGm~A~rrl----~elrk~g~~~v~fgllaPil~g 290 (372)
T COG3329 237 GESVLKPFFDPLFQGVLCLFLLDMGMTAGRRL----KELRKVGQGLVLFGLLAPILHG 290 (372)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHhHHHHHHH----HHHHhcCcceehHHHHHHHHHH
Confidence 33456666676777777788889999887653 2344433333333344565543
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.04 E-value=0.35 Score=46.91 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=55.5
Q ss_pred HHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc---chHHHHHHHHH---HHHHH
Q 018360 10 VVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM---NLKLIYADFLQ---KLLAF 83 (357)
Q Consensus 10 ~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~---~~~~~~~~~~~---~~~~~ 83 (357)
.++.+=+..+.+++|.++. ..|+++.+......+.+...++|..++--+.+.|+++. ..+.+..++++ +.+..
T Consensus 21 ~f~~l~~~vl~~~~~~~ls-nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~ 99 (378)
T PF05684_consen 21 FFKYLPGAVLCYLLGMLLS-NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGA 99 (378)
T ss_pred hHhhcCHHHHHHHHHHHHH-HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455667778889999987 48999655667899999999999999999999887642 24444444433 33334
Q ss_pred HHHHHHHH
Q 018360 84 LVLVALTK 91 (357)
Q Consensus 84 ~~~~~~~~ 91 (357)
.+++.+.+
T Consensus 100 ~va~~l~~ 107 (378)
T PF05684_consen 100 VVAFLLFG 107 (378)
T ss_pred HHHHHHHh
Confidence 44444433
No 15
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.96 E-value=0.013 Score=54.67 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=74.1
Q ss_pred HHHhhHHHHHHHHHhhhhhhhccccChhh--hhHHHHHHHHHHhHHHHHHHHhhc--CCCCcchHHHHHHHHHHHHHHHH
Q 018360 10 VVAACVPLYVAMLLAYISVKWWKLFTPDQ--CAGINKFVAKFSIPLLSFQVISKN--NPYKMNLKLIYADFLQKLLAFLV 85 (357)
Q Consensus 10 ~~~~ilpi~lii~lG~~~~r~~~~~~~~~--~~~L~~lv~~i~lPalif~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 85 (357)
++....-+++-+.+|..+.|+.+.+.+.. .+.++.+.+. .+++..+..+ +..+..+....+..+...+.+.+
T Consensus 136 i~~~~~~v~vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~----liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~~ 211 (286)
T TIGR00841 136 IGLSLVAVLIPVSIGMLVKHKLPQIAKIILKVGLISVFLLS----VIIAVVGGINVENLATIGPLLLLVGILLPLAGFLL 211 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCchHHHHHHH----HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33336667777888998833221111111 1223332222 2223323222 12222344455555666777889
Q ss_pred HHHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 018360 86 LVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLL 148 (357)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~~~~~~~~~~~~~~~l~ 148 (357)
+|.++|.+|.+..++....+ .++..|++ +++++....|+++.......|.+.+++..-.++
T Consensus 212 g~~~a~~~~l~~~~~~t~~~-~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a 272 (286)
T TIGR00841 212 GYLLAKLAGLPWARCRTISI-EVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFA 272 (286)
T ss_pred HHHHHHHhCCCHhhheeeee-eeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988766434322234 47889988 999999999986655556666655554443333
No 16
>PRK10711 hypothetical protein; Provisional
Probab=96.13 E-value=0.17 Score=45.25 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=104.0
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHH
Q 018360 206 RKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIV 285 (357)
Q Consensus 206 ~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~ 285 (357)
++.+.||.+++.++-+.+-.. .|++..++ .+--+++...--| +-.+++.-|.+..+..|++++++...+.+=-++
T Consensus 27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v 101 (231)
T PRK10711 27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV 101 (231)
T ss_pred CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999998777766665 27766554 4444666655555 446777888877555677888888888777777
Q ss_pred HHHHHHHHHHHhCCchhhHHHhhhhhc-CCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 286 GPALMAASSFAIGLRGTLFKIAFVQAA-LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a-~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
.-...+.+++++|.|++....+.=-+. +|. ..-.+++.|++++.++..+.+|=++....-|.+.-.+
T Consensus 102 ~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPI---Am~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 102 AMVTGTAVALWMGATPEIAASILPKSVTTPI---AMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhhhhhHHH---HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 878888888999999987766655443 343 3567899999999999999999888877777655443
No 17
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=96.07 E-value=0.29 Score=43.89 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=101.5
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHH
Q 018360 206 RKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIV 285 (357)
Q Consensus 206 ~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~ 285 (357)
|+.+.||.+++.++-+.+-.. .+++..++ .+--+++...--| +-.+++.-|.+..+..|++|+.+...+..=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556789999988877776665 26666544 4445555554444 445677888776555677888888887777777
Q ss_pred HHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 286 GPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
.-...+.+.+++|.|++....+.=-+. +.....-.+++.|+++..++..+.++=++..+.-|...-.+
T Consensus 107 ~i~s~~~la~~lgl~~~~~~Sl~pKSV--TtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMASMLPQAA--TTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhHhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777778888899999986655544432 22234668899999999999999999888877777655443
No 18
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=96.04 E-value=0.24 Score=43.95 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=101.7
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHH
Q 018360 205 GRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFI 284 (357)
Q Consensus 205 ~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli 284 (357)
+++.+.||.+++.++=+.+-.. .|++..++- +--+.+...--|. -.+++.-|.+..+..+++++++...+..=-+
T Consensus 15 ~~~~~l~P~l~a~~~ii~~L~~---~~i~y~~Y~-~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~g~~ 89 (215)
T PF04172_consen 15 FKSPFLNPLLIAIVLIIAFLLL---TGIPYEDYM-QGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLVGSL 89 (215)
T ss_pred cCCCcccHHHHHHHHHHHHHHH---HCCCHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999998875555444 277665443 4566665555554 7888999987655567788888888777777
Q ss_pred HHHHHHHHHHHHhCCchhhHHHhhhhhc-CCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 285 VGPALMAASSFAIGLRGTLFKIAFVQAA-LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 285 ~~Pli~~~~~~~~~~~~~~~~~~vl~~a-~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
+.-...+.+.++++.|++....+.=-+. +|. ..-.+++.|+++..++..+.+|=++....-|.+.-.
T Consensus 90 ~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpi---Ai~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~ 157 (215)
T PF04172_consen 90 VSIFSAVLLARLLGLSPEIILSLAPKSVTTPI---AIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKL 157 (215)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHH---HHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhH
Confidence 7777778888899999886665554443 343 356788999999999999999888877766655443
No 19
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=95.97 E-value=0.25 Score=43.82 Aligned_cols=144 Identities=12% Similarity=0.055 Sum_probs=101.6
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHH
Q 018360 204 VGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKF 283 (357)
Q Consensus 204 ~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rl 283 (357)
-.|+.+.||.+++.++.+.+-.. .|++..+ -..--+++.+.--| +-.++..=|.+..+..+++|+.+...++.=-
T Consensus 27 r~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~-Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs 101 (230)
T COG1346 27 RTKSPFLNPLLVATVLLIAFLLL---FGISYED-YMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGS 101 (230)
T ss_pred hcCCcccchHHHHHHHHHHHHHH---cCCCHHH-HhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999988887776 3666543 34444555555555 6677778887665456778888887777777
Q ss_pred HHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 284 IVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 284 i~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
++.-...+.+.++++.|++....+.=-+. +.....-.+++.|+-++.++..+.++=++.-+.-|...-.
T Consensus 102 ~~ai~s~~llak~~g~~~~~~~Sl~PkSv--TTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~ 170 (230)
T COG1346 102 VVAIISGVLLAKLFGLSPELILSLLPKSV--TTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKL 170 (230)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhccccc--ccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76667777788889999986655443332 2223456788999999999999988888877766655433
No 20
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=95.96 E-value=0.49 Score=42.25 Aligned_cols=142 Identities=8% Similarity=0.024 Sum_probs=98.4
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHH
Q 018360 206 RKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIV 285 (357)
Q Consensus 206 ~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~ 285 (357)
++.+.||.+++.++-+.+-.. .|++..++ .+--+.+...--| +..+++.-|.+..+..+++++++...+..=-++
T Consensus 26 ~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~ 100 (226)
T TIGR00659 26 KRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAVGSVI 100 (226)
T ss_pred CCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556789999998877766665 26665544 4455555443333 456777788776555667788877777766666
Q ss_pred HHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 286 GPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
.-.....+.+.+|.|++....+.=-+. +.....-.+++.|++++.++..+.+|=++....-|...-.
T Consensus 101 ~~~s~~~la~~lg~~~~i~~Sl~pkSv--TtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~ 167 (226)
T TIGR00659 101 AIISGTLLALLLGLGPEIIASLLPKSV--TTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRY 167 (226)
T ss_pred HHHHHHHHHHHHCcCHHHHHHhhhHHh--hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788889999886655444433 1223456788999999999999999888877776655443
No 21
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.63 E-value=0.67 Score=43.55 Aligned_cols=127 Identities=20% Similarity=0.132 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHhhhhhhhccccChh--hhhHHHHHHHHHHhHHHHHHHHhhcCCC--CcchHHHHHHHHHHHHHHHHHHH
Q 018360 13 ACVPLYVAMLLAYISVKWWKLFTPD--QCAGINKFVAKFSIPLLSFQVISKNNPY--KMNLKLIYADFLQKLLAFLVLVA 88 (357)
Q Consensus 13 ~ilpi~lii~lG~~~~r~~~~~~~~--~~~~L~~lv~~i~lPalif~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 88 (357)
.+..+++-+.+|-++.++ +++- ..+..-..+-...+=+.++...+.+..+ +.......+..+...+++.++|.
T Consensus 166 i~~~vllP~~LG~~~r~~---~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~ 242 (319)
T COG0385 166 ILLQVLLPFVLGQLLRPL---LPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYF 242 (319)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777322 2221 1223333444455556666666655322 22333344455677788999999
Q ss_pred HHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcc-cchhHHHHHHHHHHHHHH
Q 018360 89 LTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYS-EEAALLLAQIVVLQSLIW 144 (357)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g-~~~~~~~~~~~~~~~~~~ 144 (357)
.+|++|.|+.++. +...+++..| .-+|.|+....++ ...+.+..+|...|++..
T Consensus 243 ~ar~~g~~~a~~i-ti~ie~g~qn-~~lg~alA~~f~~~~~~alP~aif~~~q~~~~ 297 (319)
T COG0385 243 GARLLGFDKADEI-TIAIEGGMQN-LGLGAALAAAFFGNPLMALPLAIFSVWQNMSG 297 (319)
T ss_pred HHHHhCCChhhee-eEEEeecccc-HHHHHHHHHhcCCCchhHhHHHHHHHHHHHHH
Confidence 9999987766553 3333466667 5689999999556 344445666666555433
No 22
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.56 E-value=0.47 Score=44.62 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=84.4
Q ss_pred HhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHH
Q 018360 208 LIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGP 287 (357)
Q Consensus 208 ~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~P 287 (357)
.-.+++++|.++|++++-. -...|+....-++.-++-....+...+|.+++... ...-.++........ ....=
T Consensus 24 ~~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~~~~~~~~~~-v~~~~ 97 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGWKGLLIIIIV-VILTF 97 (305)
T ss_pred cCccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCccHHHHHHHH-HHHHH
Confidence 3577889999999999931 25678899999999999999999999999997653 222233332222221 12222
Q ss_pred HHHHHHH-HHhCCchhhHHHhhhhhc-CCcchHH-HHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018360 288 ALMAASS-FAIGLRGTLFKIAFVQAA-LPQGIVP-FVFAKEYNVHP---DILSTGVLFGMIITLPVTLAYYFLLAL 357 (357)
Q Consensus 288 li~~~~~-~~~~~~~~~~~~~vl~~a-~P~a~~~-~i~a~~~~~~~---~~aa~~v~~stllsi~tl~i~~~~l~~ 357 (357)
.+.+.+. ..+++|++... ++-+. .=|+... ...+..-+.++ ..+.+++++-..++++..|.....+++
T Consensus 98 ~~~~~lg~r~~~l~~~~~~--Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~l 171 (305)
T PF03601_consen 98 LLTYWLGRRLFGLDRKLAI--LIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALGL 171 (305)
T ss_pred HHHHHHHHHHhCCCHHHHH--HHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhCC
Confidence 2233334 67888876432 22211 2222222 22222333333 355566666667777788877766653
No 23
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.34 E-value=5 Score=38.28 Aligned_cols=103 Identities=10% Similarity=0.115 Sum_probs=68.3
Q ss_pred ccccChhhhhHHHHHH-----HHHHhHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 018360 31 WKLFTPDQCAGINKFV-----AKFSIPLLSFQVISKNNPYK---MNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWII 102 (357)
Q Consensus 31 ~~~~~~~~~~~L~~lv-----~~i~lPalif~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (357)
.++++++..+..+++. .|++.-|++--|+...|.+- .-.+++...+.+.+...+.+.+++.+++.+..+...
T Consensus 6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~~~ 85 (347)
T TIGR00783 6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLM 85 (347)
T ss_pred eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHhhh
Confidence 5888998888888754 57889999999999887552 134555555566666667777777777766555422
Q ss_pred Hh-h-hccccccchhhhHHHHHH-hcccchhHHH
Q 018360 103 TG-L-SLSSLPNSLILGIPLLRA-MYSEEAALLL 133 (357)
Q Consensus 103 ~~-~-~~~~~~N~~~lg~Pi~~~-l~g~~~~~~~ 133 (357)
.. + .++.--+.|..|+...++ ..|.+.-.|.
T Consensus 86 ~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~ 119 (347)
T TIGR00783 86 YIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIF 119 (347)
T ss_pred eeeehhcCCCcccchhhHHHHHHHHhCCCHHHHH
Confidence 11 1 124445678888877766 6677654443
No 24
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.48 E-value=1.7 Score=41.14 Aligned_cols=114 Identities=13% Similarity=0.227 Sum_probs=67.4
Q ss_pred HhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhc--C--CCCcchHHHHH----HHHHHHHHH
Q 018360 12 AACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKN--N--PYKMNLKLIYA----DFLQKLLAF 83 (357)
Q Consensus 12 ~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~--~--~~~~~~~~~~~----~~~~~~~~~ 83 (357)
+-.+.+++-..+|-++.|+.+-.-+ ..+...+.+-...+-.+++.++.+. + .++.+...+.. ...-..+.+
T Consensus 162 ~L~~~vllP~~~Gq~~r~~~~~~~~-~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 240 (313)
T PF13593_consen 162 KLVLTVLLPLVLGQLLRRWVPKWVA-RHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL 240 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 4455566667778887332221111 2345566667788888888887765 1 12223322211 112222335
Q ss_pred HHHHHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc
Q 018360 84 LVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE 128 (357)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~ 128 (357)
.++|..+|.++.++.++ +.... |+-..+.-+|+|+...+|++.
T Consensus 241 ~~~~~~~r~~~~~~~d~-iA~~F-~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 241 VLGWLAARLLGFSRPDR-IAVLF-CGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred HHHHHHHhhcCCChhhE-EEEEE-EcCcCcchhHHHHHHHHcccc
Confidence 56677888877666565 33333 566888999999999999875
No 25
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.35 E-value=4.2 Score=34.20 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=43.0
Q ss_pred HHHHHHhCCchhhHHHhhhhhcCCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018360 291 AASSFAIGLRGTLFKIAFVQAALPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYF 353 (357)
Q Consensus 291 ~~~~~~~~~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~ 353 (357)
+.+.++.+.|.. ..+.+++|-+... ..+|+++|.|+..++..-..=.++-+.++|.+..
T Consensus 95 ~~l~~~~~~~~~----ta~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~ 154 (156)
T TIGR03082 95 WLLARLTGVDPL----TAFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLAR 154 (156)
T ss_pred HHHHHHHCCCHH----HHHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566654 3467899999887 6788999999999988777777766777776543
No 26
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=93.03 E-value=5.9 Score=37.26 Aligned_cols=212 Identities=17% Similarity=0.145 Sum_probs=116.7
Q ss_pred HHHhhHHHHHHHHHhhhhh-hhccccChhhhhHHHHHHHHHHhHHHHHHH--HhhcCCCCcchHHHHHHHHHHHHHHHHH
Q 018360 10 VVAACVPLYVAMLLAYISV-KWWKLFTPDQCAGINKFVAKFSIPLLSFQV--ISKNNPYKMNLKLIYADFLQKLLAFLVL 86 (357)
Q Consensus 10 ~~~~ilpi~lii~lG~~~~-r~~~~~~~~~~~~L~~lv~~i~lPalif~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (357)
++..++-+++.+.++|+++ |+.|+ |++ ...+..-=.-++=.+.+... ..+++.++.......+.+.+++.+++.
T Consensus 86 ~~~~~~~v~~~~~~~~~lg~r~~~l-~~~-~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~- 162 (305)
T PF03601_consen 86 LLIIIIVVILTFLLTYWLGRRLFGL-DRK-LAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLY- 162 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CHH-HHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHH-
Confidence 4456666778888889888 65554 443 34444444444444444443 334443333333222233333333332
Q ss_pred HHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 018360 87 VALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNP 166 (357)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 166 (357)
=.+.+.+..++.+. +.+...+--|++.- --....+|++...++...-...++..-++...+.-..+.++
T Consensus 163 P~l~~~l~l~~~~~--G~w~G~sIh~~aqV--vaAg~~~g~~a~~~A~ivKl~Rv~lL~pv~~~l~~~~~~~~------- 231 (305)
T PF03601_consen 163 PLLGHALGLSPQQF--GAWAGGSIHDTAQV--VAAGAIYGEEAGDVATIVKLTRVLLLGPVVLVLALFWARRQ------- 231 (305)
T ss_pred HHHHHHhCCCHHHH--HHHhhhhhcccchH--hhhhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 23455565554443 34444555555542 12244578888778888877777777776664443222210
Q ss_pred CCCCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchh-HHHHHHHHHHHHhhhccCCCCcHHHHHHHHHH
Q 018360 167 ETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPN-THATLLGLIWASIEFRWGVKLPAIIDQSVRIL 245 (357)
Q Consensus 167 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~-~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~l 245 (357)
+++ + ++. + + ..-|. +++.++..+++.. ..+|+.+.+.++.+
T Consensus 232 ----------~~~--~----------~~~------~----~-~~~P~FvlgFl~~~~l~s~-----~~~~~~~~~~~~~~ 273 (305)
T PF03601_consen 232 ----------EKS--S----------GKS------K----K-VSFPWFVLGFLAASLLNSL-----GLLPAAVVSALKSL 273 (305)
T ss_pred ----------ccc--c----------ccc------C----c-cCcCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHH
Confidence 000 0 000 0 1 12444 4455555555544 34788999999999
Q ss_pred HhhHHHHHHHHhhhhhccCCcccccchHH
Q 018360 246 SNGGLGMAMFSLGLFMASRPSIIACGTRM 274 (357)
Q Consensus 246 g~~~~pl~L~~lG~~L~~~~~~~~~~~~~ 274 (357)
++...-++|..+|.+.+.++ ..+..+|.
T Consensus 274 s~~~~~~A~aaiGl~~~~~~-l~~~G~kp 301 (305)
T PF03601_consen 274 SKWLFALAMAAIGLSTNFKD-LKQVGWKP 301 (305)
T ss_pred HHHHHHHHHHHHhhcCcHHH-HHhcCccc
Confidence 99999999999999998764 23344444
No 27
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.57 E-value=3.5 Score=42.70 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=87.7
Q ss_pred hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHH
Q 018360 210 INPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPAL 289 (357)
Q Consensus 210 ~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli 289 (357)
.+|.+-|.+.|+++.- -+....+.+.++-..+...|+-.+.+|+.++... ....+..+...++..++.=++.
T Consensus 237 ls~~LGAFlaGl~l~~------s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~--l~~~~~~il~~~~~~l~~K~~~ 308 (601)
T PRK03659 237 LSMALGTFIAGVLLAE------SEYRHELEIAIEPFKGLLLGLFFISVGMALNLGV--LYTHLLWVLISVVVLVAVKGLV 308 (601)
T ss_pred ccHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 5566666666666653 2334556666777778999999999999987642 2234444444555566666666
Q ss_pred HHHHHHHhCCchhhH--HHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 290 MAASSFAIGLRGTLF--KIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 290 ~~~~~~~~~~~~~~~--~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
.+......+.+.... ....+.....-+......+.++|.=++...+.+...+++|.+..|+...+
T Consensus 309 ~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~ 375 (601)
T PRK03659 309 LYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL 375 (601)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776777777765332 22333344555556666677888755666666678888888888876543
No 28
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=92.35 E-value=2.4 Score=39.55 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=70.5
Q ss_pred HHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------hHHHhhhhhcCCcchH
Q 018360 245 LSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGT------LFKIAFVQAALPQGIV 318 (357)
Q Consensus 245 lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~------~~~~~vl~~a~P~a~~ 318 (357)
=++....+-+++.|.+++.+. .....|+-......|+++.-++.+.+.+++|.++. -...+.+.+|+-....
T Consensus 46 G~~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~Ng 123 (314)
T PF03812_consen 46 GANPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNG 123 (314)
T ss_pred chHHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCH
Confidence 345566778899999998764 34567888888999999999999999998887753 3445667777776666
Q ss_pred HHH--HHHHhCCCchhHHHHHHHHHHHHHHHHH
Q 018360 319 PFV--FAKEYNVHPDILSTGVLFGMIITLPVTL 349 (357)
Q Consensus 319 ~~i--~a~~~~~~~~~aa~~v~~stllsi~tl~ 349 (357)
... +.++||.++|..|. .+..+.+-|.++
T Consensus 124 gLY~aL~~~yGd~~D~gA~--~i~sl~~GPf~t 154 (314)
T PF03812_consen 124 GLYLALMGQYGDEEDVGAF--SILSLNDGPFFT 154 (314)
T ss_pred HHHHHHHHHhCCHHHhHHH--HHHHhhhhHHHH
Confidence 644 45688865555443 444555555444
No 29
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.20 E-value=4.6 Score=42.00 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=83.3
Q ss_pred chhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHH
Q 018360 211 NPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALM 290 (357)
Q Consensus 211 nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~ 290 (357)
++.+=|.+.|+++.- -+.-..+.+-++-..+...|+-.+.+|+++.... ....+..+...++..++.=++..
T Consensus 241 s~~lGAFlAGl~l~~------~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~--l~~~~~~il~~~~~~~~~K~~~~ 312 (621)
T PRK03562 241 SMALGAFLAGVLLAS------SEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGT--LLENPLRILILLLGFLAIKIAML 312 (621)
T ss_pred cHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554442 2333456666666778899999999999997642 12233344444555666666666
Q ss_pred HHHHHHhCCchh--hHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 291 AASSFAIGLRGT--LFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 291 ~~~~~~~~~~~~--~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
+..+...+.+.. ....+.+......+.....++.+.|.=++...+.+....++|.+..|++..+
T Consensus 313 ~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~ 378 (621)
T PRK03562 313 WLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVL 378 (621)
T ss_pred HHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777776543 2223334444666666677777777645555555666888888888876544
No 30
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=91.95 E-value=0.91 Score=43.20 Aligned_cols=100 Identities=15% Similarity=0.050 Sum_probs=69.6
Q ss_pred HHHHHHHhhhhhhhccccChhh---hhHHHHHHHHHHhHHHHH-HHHhhcCCCCc----chHHHHHHHHHHHHHHHHHHH
Q 018360 17 LYVAMLLAYISVKWWKLFTPDQ---CAGINKFVAKFSIPLLSF-QVISKNNPYKM----NLKLIYADFLQKLLAFLVLVA 88 (357)
Q Consensus 17 i~lii~lG~~~~r~~~~~~~~~---~~~L~~lv~~i~lPalif-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 88 (357)
...++.+|.++ |..|+++++. .+...+++.+-+.++++. -.++..++++. .+..+..++.+.+...+.+++
T Consensus 207 ~v~mII~~vi~-k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAAL-KAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 45677888888 6799999874 456666666666666665 46666676542 355555555666666777888
Q ss_pred HHHhhcCCchhhHHHh-hhccccccchhhh
Q 018360 89 LTKISSRSGLRWIITG-LSLSSLPNSLILG 117 (357)
Q Consensus 89 ~~~~~~~~~~~~~i~~-~~~~~~~N~~~lg 117 (357)
++|+++--+.+..+++ ++++..+-+|.++
T Consensus 286 vGKllG~YPiE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 286 LGKLMGMYPVESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence 9999988777877764 6667777777775
No 31
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=91.32 E-value=0.27 Score=47.10 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=71.7
Q ss_pred HHHHHHhhhhhccCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCc-chHHHHHHHHhCC
Q 018360 251 GMAMFSLGLFMASRPSI-IACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQ-GIVPFVFAKEYNV 328 (357)
Q Consensus 251 pl~L~~lG~~L~~~~~~-~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~-a~~~~i~a~~~~~ 328 (357)
-..++.+|..+...... ....-+......+.++++.|+..+.....+.++.......++.++.++ +...++.+..-+.
T Consensus 120 ~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g 199 (371)
T KOG2718|consen 120 LSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPG 199 (371)
T ss_pred HHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCc
Confidence 35577788887654311 111122334445559999999999877666666655344555555555 4555555555588
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018360 329 HPDILSTGVLFGMIITLPVTLAYYFLLA 356 (357)
Q Consensus 329 ~~~~aa~~v~~stllsi~tl~i~~~~l~ 356 (357)
|...+......||+.+++.+|.|-.+++
T Consensus 200 ~v~lsilmT~~stv~avi~~pl~s~~l~ 227 (371)
T KOG2718|consen 200 DVTLSILMTTISTVLAVILTPLLSILLG 227 (371)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888999999999999999999987763
No 32
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.79 E-value=9.2 Score=39.76 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=66.0
Q ss_pred HHHHHhhchhHHHHHH-HHHHHHhhhccCCCC-cHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHH
Q 018360 204 VGRKLIINPNTHATLL-GLIWASIEFRWGVKL-PAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMAL 281 (357)
Q Consensus 204 ~~~~~~~nP~~ia~il-gli~~~~~~~~~~~l-P~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~ 281 (357)
..|+ ++.|.+++-++ |++++-. +..+ ++ .+.+..++...+.+.||.+|..++... .+...|.++.....
T Consensus 23 l~~r-l~lp~vlgyilaGillGP~----~lg~i~~--~~~i~~laelGvv~LlF~iGLEl~~~~--l~~~~~~~~~~g~~ 93 (621)
T PRK03562 23 IAVR-LGLGSVLGYLIAGCIIGPW----GLRLVTD--VESILHFAEFGVVLMLFVIGLELDPQR--LWKLRRSIFGGGAL 93 (621)
T ss_pred HHHH-hCCChHHHHHHHHHHhCcc----cccCCCC--HHHHHHHHHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHHHHH
Confidence 4555 68888888754 7777643 2222 22 245778999999999999999997653 23344454444444
Q ss_pred HHHHHHHHHHHHHHHhCCchhhHH-HhhhhhcCCcchHHHHHHHH
Q 018360 282 KFIVGPALMAASSFAIGLRGTLFK-IAFVQAALPQGIVPFVFAKE 325 (357)
Q Consensus 282 rli~~Pli~~~~~~~~~~~~~~~~-~~vl~~a~P~a~~~~i~a~~ 325 (357)
-.++.-++..++.+.++.+..... .....+.+.+|+..-++.++
T Consensus 94 qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~ 138 (621)
T PRK03562 94 QMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNER 138 (621)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444333333445556676554322 22334445556655555554
No 33
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=87.59 E-value=30 Score=33.92 Aligned_cols=228 Identities=17% Similarity=0.132 Sum_probs=114.1
Q ss_pred hccccChhhhhHHHHHH-----HHHHhHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 018360 30 WWKLFTPDQCAGINKFV-----AKFSIPLLSFQVISKNNPYK---MNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWI 101 (357)
Q Consensus 30 ~~~~~~~~~~~~L~~lv-----~~i~lPalif~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (357)
..++++++..+..+++. .|++.-+++--|+...|.+- ...+++...+.+.+...+++.+.+.+++.+..+..
T Consensus 74 ~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i 153 (414)
T PF03390_consen 74 YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAI 153 (414)
T ss_pred HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 37999999888888876 67899999999998887552 23566666666666777777777777776655542
Q ss_pred HHh-h-hccccccchhhhHHHHHH-hcccchhHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhcCCCCCCCCCCCccc-
Q 018360 102 ITG-L-SLSSLPNSLILGIPLLRA-MYSEEAALLLAQIVVLQSLIWYNLLLFLFEL---NAAKSASVTPNPETPEEHDA- 174 (357)
Q Consensus 102 i~~-~-~~~~~~N~~~lg~Pi~~~-l~g~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~- 174 (357)
... + .++.--+.|..|+...++ ..|.+.-.+.... +.-..+-+.+++...+. -.++..+-+.|++-...++.
T Consensus 154 ~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~-ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~ 232 (414)
T PF03390_consen 154 FYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQL-IPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDE 232 (414)
T ss_pred HHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccc
Confidence 211 1 124445567776666533 3454443332221 11111222223322221 11110011111111000000
Q ss_pred chhhhhhhhhhhhhhhcccc-cc-hhHHHHHHHHHHh-hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHH----HHHHh
Q 018360 175 SQESQAKEGEEEAQNRTATR-VR-TTHILLTVGRKLI-INPNTHATLLGLIWASIEFRWGVKLPAIIDQSV----RILSN 247 (357)
Q Consensus 175 ~~~~~~~e~~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l----~~lg~ 247 (357)
..++++++.+.+.++-...- -. ..-.+...+.+.+ ..++.+..++..+++.+ ++ +|+.+++.. +....
T Consensus 233 ~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~----~l-vP~~~e~~a~~~~~f~~~ 307 (414)
T PF03390_consen 233 EEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF----GL-VPESLEEGAKQWYKFFSK 307 (414)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----Cc-CCHHHHHHHHHHHHHHHH
Confidence 00000000000000000000 00 0000111222322 45667778888888887 66 776666554 66777
Q ss_pred hHHHHHHHHhhhhhcc
Q 018360 248 GGLGMAMFSLGLFMAS 263 (357)
Q Consensus 248 ~~~pl~L~~lG~~L~~ 263 (357)
..++..|+.+|....+
T Consensus 308 ~lt~~lLvgiGv~~~~ 323 (414)
T PF03390_consen 308 NLTWPLLVGIGVAYTD 323 (414)
T ss_pred HHHHHHHHHHHhhhCc
Confidence 8889999999999643
No 34
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=87.14 E-value=1.3 Score=38.89 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=66.0
Q ss_pred HHHHHHHhhhhhccCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHh---CCchhhHHHhhhhhcCCcchHH-HHHHH
Q 018360 250 LGMAMFSLGLFMASRPSI-IACGTRMAAVAMALKFIVGPALMAASSFAI---GLRGTLFKIAFVQAALPQGIVP-FVFAK 324 (357)
Q Consensus 250 ~pl~L~~lG~~L~~~~~~-~~~~~~~~~~~~~~rli~~Pli~~~~~~~~---~~~~~~~~~~vl~~a~P~a~~~-~i~a~ 324 (357)
+.-..+.-|.+|....-. -..+||.-+...+.-+.+.|...++++... +.|+....-+.+.+|||+.+.+ +++..
T Consensus 60 va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~ 139 (287)
T KOG4821|consen 60 VAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTT 139 (287)
T ss_pred EEEEEeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeee
Confidence 333344455555432100 014677777888888999999999876554 3555667778889999999988 66666
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHH
Q 018360 325 EYNVHPDILSTGVLFGMIITLPVTLAY 351 (357)
Q Consensus 325 ~~~~~~~~aa~~v~~stllsi~tl~i~ 351 (357)
.-|+|+ ++..+-|.+++..+.+..
T Consensus 140 ~aGGNa---~A~~v~S~f~g~L~~~~i 163 (287)
T KOG4821|consen 140 NAGGNA---SALCVCSVFIGNLLGAFI 163 (287)
T ss_pred ccCccH---HHHHHHHHHHHHHhhhHH
Confidence 777665 555677777777766543
No 35
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.06 E-value=24 Score=36.11 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=81.3
Q ss_pred hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHH
Q 018360 210 INPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPAL 289 (357)
Q Consensus 210 ~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli 289 (357)
.++.+-|.+.|++++-. +..+.+.+-..-+.+...|+-.+.+|+++.... ....+...+..++.+++.=++.
T Consensus 248 ls~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~--l~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 248 VSFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMI--LIQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred ccHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777776532 223334433333567889999999999987542 1122222333444455555555
Q ss_pred HHHHHHHhCCchh-hHHHhhhh-hcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 290 MAASSFAIGLRGT-LFKIAFVQ-AALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 290 ~~~~~~~~~~~~~-~~~~~vl~-~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
.+..+...+.+.. -....+.+ .-...+.....++.+.|.=++...+.+...+++|....|.+...
T Consensus 320 ~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 320 AFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555665433 22333333 33566666667777777655666667888888998888877543
No 36
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=85.75 E-value=35 Score=34.13 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=26.8
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhc-cCCCCcHHHHHHH
Q 018360 205 GRKLIINPNTHATLLGLIWASIEFR-WGVKLPAIIDQSV 242 (357)
Q Consensus 205 ~~~~~~nP~~ia~ilgli~~~~~~~-~~~~lP~~i~~~l 242 (357)
+|+++++|++||+.++-.....+.. .-...|.++.+.+
T Consensus 251 ~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL 289 (466)
T KOG2532|consen 251 YKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL 289 (466)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 7889999999999998877766210 1124677777655
No 37
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=85.33 E-value=33 Score=32.25 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHH
Q 018360 213 NTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAA 292 (357)
Q Consensus 213 ~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~ 292 (357)
.+++.++|++++-. .-++|+...+-.+. ..|+.-+.+|.+++... ..+..++-+......=.+ .=.+.+.
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~-I~~~G~~GIlL~v~vv~~-t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSM-LLQAGLAGILLGVLVTIV-TGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHH-HHHhChHHHHHHHHHHHH-HHHHHHH
Confidence 67777788877744 33466666666554 88899999999998753 223334443333322222 2222233
Q ss_pred HHHHhCCchhhHHHhhhhh-------cCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 293 SSFAIGLRGTLFKIAFVQA-------ALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 293 ~~~~~~~~~~~~~~~vl~~-------a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
+..+++.|+... .+.+ |.|.|+... ...++-..+.++.-+.-+.++..+..|+....
T Consensus 239 i~rllg~~~~~g---~li~stAGnAIcgpAAVaAa--dP~~~~~~~~Ataqvaa~vivTail~P~~t~~ 302 (312)
T PRK12460 239 ADRLVGGTGIAG---AAASSTAGNAVATPLAIAAA--DPSLAPVAAAATAQVAASVIVTAILTPLLTSW 302 (312)
T ss_pred HHHHhCCChhHH---HHHHHHhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567666542 3333 233333321 12333334556666666666666666766543
No 38
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=85.20 E-value=11 Score=35.96 Aligned_cols=141 Identities=11% Similarity=0.002 Sum_probs=76.7
Q ss_pred hhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHH
Q 018360 209 IINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPA 288 (357)
Q Consensus 209 ~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pl 288 (357)
-.++.++|.++|++++-+ ...+.|+....-++.-++-..-.+...+|.+++... ...-.++...... .=....=+
T Consensus 30 ~l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~-i~~~G~~~l~~~~-~~v~~~~~ 104 (335)
T TIGR00698 30 ALSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPY-IADVGPNEIVADT-LILTSTFF 104 (335)
T ss_pred CCcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHH-HHHhhHHHHHHHH-HHHHHHHH
Confidence 477788999999988743 012466777777888888888899999999998653 1112222221111 11111111
Q ss_pred HHHHHH-HHhCCchhhHHHhhhhhc-CCcchHH-HHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018360 289 LMAASS-FAIGLRGTLFKIAFVQAA-LPQGIVP-FVFAKEYNVHP---DILSTGVLFGMIITLPVTLAYYFLLA 356 (357)
Q Consensus 289 i~~~~~-~~~~~~~~~~~~~vl~~a-~P~a~~~-~i~a~~~~~~~---~~aa~~v~~stllsi~tl~i~~~~l~ 356 (357)
+.+.+. ..+++|++.. .++-+. .=|+... ...+..-+.|+ ..+.+.+++-..++++..|.....++
T Consensus 105 ~~~~~g~k~l~l~~~~~--~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 105 LTVFLGSSRLKLDKQMS--ILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHHHHHHhCCChhHH--HHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 222233 4678887643 111111 1122222 22222334344 34555666666677777777766654
No 39
>COG2855 Predicted membrane protein [Function unknown]
Probab=84.33 E-value=6.1 Score=37.37 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=79.6
Q ss_pred hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHH
Q 018360 210 INPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPAL 289 (357)
Q Consensus 210 ~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli 289 (357)
..|+++|+++|++++. -.+.|+....-++.-.+.-...+...+|.+++... ......+- +.....-+...=++
T Consensus 37 l~al~lAIllGi~l~~-----l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~-i~~~G~~~-v~~~~~~l~~t~~~ 109 (334)
T COG2855 37 LSALTLAILLGILLGI-----LPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSD-IADVGGSG-VLIIAITLSSTFLF 109 (334)
T ss_pred chHHHHHHHHHHHHhc-----cccchhhhccchhhhHHHHHHHHHHHHcceeeHHH-HHHcCccH-HHHHHHHHHHHHHH
Confidence 4589999999999994 34566677778888888889999999999998653 11112221 12222222233334
Q ss_pred HHHHHHHhCCchhhHHHhhhhhc--CCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHH---HHHHHHHHh
Q 018360 290 MAASSFAIGLRGTLFKIAFVQAA--LPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLP---VTLAYYFLL 355 (357)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~vl~~a--~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~---tl~i~~~~l 355 (357)
++.+...+++|+... .+.++ .=|+... ...+...+-++|+.+..+..-++++.+ ..|....++
T Consensus 110 ~~~lg~~lgld~~~a---~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 110 AYFLGKLLGLDKKLA---LLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred HHHHHHHhCCCHHHH---HHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence 445556778887643 22222 2233333 333345666777666666655555544 444444444
No 40
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=82.31 E-value=47 Score=32.29 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=84.0
Q ss_pred hhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHH---HHHHHHHH
Q 018360 209 IINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAV---AMALKFIV 285 (357)
Q Consensus 209 ~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~---~~~~rli~ 285 (357)
...|++++.+++.+++-. |+--++.-.+.-+.+.+-.+|+++..+=.+.+.++ ..+...|.... ..+.=.+-
T Consensus 24 ~l~~~vl~~~~~~~lsnl----gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~-i~~~g~~~l~~F~~~~~g~viG 98 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNL----GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRR-ILRLGGRLLLAFLIGAVGTVIG 98 (378)
T ss_pred hcCHHHHHHHHHHHHHHC----CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 478999999999999977 64311234566677778888888776655544332 22222222221 12222222
Q ss_pred HHHHHHHHHHHhCCchhhHHHhhhhhc--CCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 286 GPALMAASSFAIGLRGTLFKIAFVQAA--LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a--~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
.+ +.+.+... .+.++.++..-..++ .=-+.|-..+++.++.+++.-+..+..-++.+-+-+.+.+.+
T Consensus 99 ~~-va~~l~~~-~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 99 AV-VAFLLFGG-FLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HH-HHHHHHhh-cccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22211111 123555555444443 666788899999999999998988888888887776666544
No 41
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=81.32 E-value=38 Score=32.04 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=43.4
Q ss_pred HHHhCCchhhHHHhhhhhcCCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 294 SFAIGLRGTLFKIAFVQAALPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 294 ~~~~~~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
....+.|.. .-+.+++|-+.+. ..+|+++|.|++.++..-.+=-++-+.++|.....+
T Consensus 76 ~r~~~~d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~ 134 (318)
T PF05145_consen 76 RRISGLDRA----TAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLL 134 (318)
T ss_pred HHHcCCChh----HHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455543 4577899999887 789999999999988877777777777788776543
No 42
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=78.55 E-value=61 Score=30.65 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=45.4
Q ss_pred HHHHHHHhCCchhhHHHhhhhhcCCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 290 MAASSFAIGLRGTLFKIAFVQAALPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
++.+.++.+.|.. ..+.+..|-+... ...|...|.|+..++..-..=-+.-+.+.|.+.-.
T Consensus 251 a~~l~~~~~~~~~----t~~La~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~ 312 (318)
T PF05145_consen 251 AWLLSRLTGIDFL----TALLATAPGGLAEMALIALALGADVAFVAAHQVVRLLFVLLLAPFIARW 312 (318)
T ss_pred HHHHHHHHCCCHH----HHHHHhCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455565543 4677889999988 56788999999999988888777777888877543
No 43
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=78.08 E-value=61 Score=34.64 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=50.9
Q ss_pred HHhhchhHHHHHHHHHHHHhhhccCCCCcHHH-----HHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHH
Q 018360 207 KLIINPNTHATLLGLIWASIEFRWGVKLPAII-----DQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMAL 281 (357)
Q Consensus 207 ~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i-----~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~ 281 (357)
+.-...++++.+.|++++.. +....++. ....--+...+..+.||..|..+... ..++.|+.++.....
T Consensus 35 Rl~Ls~~~v~Ll~GiilGP~----~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~--~Lrr~wrsV~rLl~~ 108 (810)
T TIGR00844 35 KLYIGESMVASIFGLIVGPH----CLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRK--YMLKHWVSVTMLLVP 108 (810)
T ss_pred hcCCcHHHHHHHHHHHhhhh----hhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHhHHHHHHHHHH
Confidence 55567789999999999876 44343333 22223388899999999999999765 244566666555444
Q ss_pred HHHHHHHHH
Q 018360 282 KFIVGPALM 290 (357)
Q Consensus 282 rli~~Pli~ 290 (357)
=+.+.=+++
T Consensus 109 ~M~lT~liv 117 (810)
T TIGR00844 109 VMTSGWLVI 117 (810)
T ss_pred HHHHHHHHH
Confidence 444433333
No 44
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=75.14 E-value=66 Score=29.32 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=55.3
Q ss_pred HHHHHHhhchhHHHH-HHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHH
Q 018360 203 TVGRKLIINPNTHAT-LLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMAL 281 (357)
Q Consensus 203 ~~~~~~~~nP~~ia~-ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~ 281 (357)
...|+ ++.|.+.+. +.|++++-. ..|.--++ +.++.+++......+|..|..++.+. .++..|+.......
T Consensus 9 ~l~~~-l~lP~~v~~il~GillGp~--~lg~i~~~---~~~~~l~~igl~~llF~~Gl~~d~~~--l~~~~~~~~~~~~~ 80 (273)
T TIGR00932 9 PLSRR-LGIPSVLGYLLAGVLIGPS--GLGLISNV---EGVNHLAEFGVILLMFLIGLELDLER--LWKLRKAAFGVGVL 80 (273)
T ss_pred HHHHH-hCCCHHHHHHHHHHHhCcc--cccCCCCh---HHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHH
Confidence 34566 577766655 558888743 11321122 46888999999999999999997652 34556666666555
Q ss_pred HHHHHH-HHH-HHHHHHhCCch
Q 018360 282 KFIVGP-ALM-AASSFAIGLRG 301 (357)
Q Consensus 282 rli~~P-li~-~~~~~~~~~~~ 301 (357)
-.+ .| ... ....+.++.+.
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~ 101 (273)
T TIGR00932 81 QVL-VPGVLLGLLLGHLLGLAL 101 (273)
T ss_pred HHH-HHHHHHHHHHHHHHCCCH
Confidence 555 45 332 23445566544
No 45
>PRK04972 putative transporter; Provisional
Probab=74.57 E-value=38 Score=34.73 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=62.6
Q ss_pred hHHHHH--HhhHHHHHHHHHhhhhhhhcccc--Chhhh--------------hHHHHHHHHHHhHHHHHHHHhhcCC---
Q 018360 6 DAYHVV--AACVPLYVAMLLAYISVKWWKLF--TPDQC--------------AGINKFVAKFSIPLLSFQVISKNNP--- 64 (357)
Q Consensus 6 ~~~~~~--~~ilpi~lii~lG~~~~r~~~~~--~~~~~--------------~~L~~lv~~i~lPalif~~~~~~~~--- 64 (357)
++.+.+ +.++.+|+.+++||+++| .++- +-... ..+...+-++.+=..++.-=.+.-+
T Consensus 4 ~~~~~l~~~~~~~lf~~i~lG~~lG~-i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~vG~~~Gp~F~ 82 (558)
T PRK04972 4 NVADLLNGNYILLLFVVLALGLCLGK-LRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFF 82 (558)
T ss_pred cHHHHhccCChHHHHHHHHHHHhhhc-eEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344445 579999999999999986 3331 11111 0112222233333333332222221
Q ss_pred CCc---chHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHhhhccccccchhhhHHHH
Q 018360 65 YKM---NLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLL 121 (357)
Q Consensus 65 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~ 121 (357)
+.. -+...+...+.+++..++++.+.|+++.+.... .+.+ +++..|+--+|...=
T Consensus 83 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~-aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 83 SIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLT-AGML-AGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHh-hccccCcHHHHHHHH
Confidence 111 245555455555666677777888888775443 3555 488899999988743
No 46
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=73.08 E-value=84 Score=29.56 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc---chHHHHH---HHHHHHHHHHHHH
Q 018360 14 CVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM---NLKLIYA---DFLQKLLAFLVLV 87 (357)
Q Consensus 14 ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~ 87 (357)
.+|-.+++-+|...-.-.|+++ .......-+-|-.+|+.|+..+.+-|.++. .-+.+.. +..+..+.+.+.+
T Consensus 31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~y 108 (384)
T COG5505 31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAY 108 (384)
T ss_pred hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 4566666666665433478885 556667788889999999999888876541 2222222 2334444444444
Q ss_pred HHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018360 88 ALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYS--EEAALLLAQIVVLQSLIWYNLLLFLFEL 154 (357)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g--~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 154 (357)
...+=.--+ ..+..+++..+-.+-..+ ..-++..+. ++..++....|.++.-.+..+-+++..+
T Consensus 109 p~~ksf~gd-~Wka~gmi~gSytGGSaN--mAAmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iVpy 174 (384)
T COG5505 109 PLLKSFIGD-LWKAGGMISGSYTGGSAN--MAAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIVPY 174 (384)
T ss_pred HHHhhhcch-HHhhhhheeeeeeCCcch--HHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443321112 122233443222222233 334455553 3334444455555444444555555543
No 47
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=70.33 E-value=85 Score=33.97 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhchhHHHH-HHHHHHHHhhhccCCCC---------cHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcc
Q 018360 198 THILLTVGRKLIINPNTHAT-LLGLIWASIEFRWGVKL---------PAIIDQSVRILSNGGLGMAMFSLGLFMASRPSI 267 (357)
Q Consensus 198 ~~~~~~~~~~~~~nP~~ia~-ilgli~~~~~~~~~~~l---------P~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~ 267 (357)
.+.....+|+ ++.|.+++- +.|++++-. .... |..-.+.++.+++...-+-||.+|+.+... .
T Consensus 55 a~l~~~ll~r-l~~P~ivgeIlaGIlLGPs----~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~--~ 127 (832)
T PLN03159 55 TRLLVFILKP-FRQPRVISEILGGVILGPS----VLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDIS--V 127 (832)
T ss_pred HHHHHHHHHh-cCCChhHHHHHHHHhcCHh----hhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHH--H
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-------hHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHH
Q 018360 268 IACGTRMAAVAMALKFIVGPALMAASSFAIGLRGT-------LFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFG 340 (357)
Q Consensus 268 ~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~-------~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~s 340 (357)
.++..|+.+.....-+++-=++++++.+.++.... .....+.++.+-.++..-++.+.--.+.+.....+..+
T Consensus 128 lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaa 207 (832)
T PLN03159 128 IRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAA 207 (832)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhcC
Q 018360 341 MIITLPVTLAYYFLLAL 357 (357)
Q Consensus 341 tllsi~tl~i~~~~l~~ 357 (357)
.+-=+..+.+...+..+
T Consensus 208 vv~Dl~~~ilLav~~~l 224 (832)
T PLN03159 208 LVNDMCAWILLALAIAL 224 (832)
T ss_pred HHHHHHHHHHHHHHHHH
No 48
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=70.23 E-value=1.1e+02 Score=29.70 Aligned_cols=69 Identities=16% Similarity=0.052 Sum_probs=46.3
Q ss_pred ccccChhhhhHHHHHH-----HHHHhHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 018360 31 WKLFTPDQCAGINKFV-----AKFSIPLLSFQVISKNNPYK---MNLKLIYADFLQKLLAFLVLVALTKISSRSGLR 99 (357)
Q Consensus 31 ~~~~~~~~~~~L~~lv-----~~i~lPalif~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (357)
.++++++..+..+.+. +|++.+|++--++...+.+. ...+++...+++.......+.+++-.++.+..|
T Consensus 92 ~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d 168 (438)
T COG3493 92 YNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQD 168 (438)
T ss_pred hccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 6888998888888875 78999999999998876442 123444444444444455556666666665544
No 49
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=67.88 E-value=55 Score=30.82 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=61.4
Q ss_pred HHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-hHHHhhhhhcCCcchHHHH--
Q 018360 245 LSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGT-LFKIAFVQAALPQGIVPFV-- 321 (357)
Q Consensus 245 lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~-~~~~~vl~~a~P~a~~~~i-- 321 (357)
=......+-+++.|.+++.+. .....|+-......|.++.-++.+....++|.|+. -...+.+.+|+=-......
T Consensus 46 g~~~il~~~~~~~Ga~I~~k~--~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~a 123 (312)
T PRK12460 46 GAAPLLGAFLLCMGAQISLKA--APQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAA 123 (312)
T ss_pred ChHHHHHHHHHHhcCeeeccc--cchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHH
Confidence 344556677899999998763 23566777788899999999999999888887765 2334556666654444433
Q ss_pred HHHHhCCCchhHH
Q 018360 322 FAKEYNVHPDILS 334 (357)
Q Consensus 322 ~a~~~~~~~~~aa 334 (357)
+..+||.++|..|
T Consensus 124 l~~~yG~~~d~gA 136 (312)
T PRK12460 124 LMGEFGDERDVGA 136 (312)
T ss_pred HHHHcCCHhhhhH
Confidence 4779996655444
No 50
>PRK05326 potassium/proton antiporter; Reviewed
Probab=66.26 E-value=83 Score=32.26 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=54.2
Q ss_pred HHHHHHhhchhHHHH-HHHHHHHHhhhccC-CCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHH
Q 018360 203 TVGRKLIINPNTHAT-LLGLIWASIEFRWG-VKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMA 280 (357)
Q Consensus 203 ~~~~~~~~nP~~ia~-ilgli~~~~~~~~~-~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~ 280 (357)
...++ ++-|.+++. ++|++++-.. .+ ++.++ .+..+.+++...++.||..|..+.... .++.++..+....
T Consensus 23 ~l~~r-~~~P~ll~~il~GillGp~~--lg~i~~~~--~~~~~~i~~l~L~~iLF~~Gl~~~~~~--l~~~~~~~~~la~ 95 (562)
T PRK05326 23 RLSSR-LGIPSLLLFLAIGMLAGEDG--LGGIQFDN--YPLAYLVGNLALAVILFDGGLRTRWSS--FRPALGPALSLAT 95 (562)
T ss_pred HHHHH-cCCcHHHHHHHHHHHhCccc--cCCcccCc--HHHHHHHHHHHHHHHHHcCccCCCHHH--HHHHHHHHHHHHH
Confidence 34555 577776654 6788877541 12 22222 256788999999999999999987653 3445555554444
Q ss_pred HHHHHHHHHH--HHHHHHhCCchh
Q 018360 281 LKFIVGPALM--AASSFAIGLRGT 302 (357)
Q Consensus 281 ~rli~~Pli~--~~~~~~~~~~~~ 302 (357)
.-.+ .|.+. +...+.++.+..
T Consensus 96 ~gv~-~t~~~~g~~~~~l~g~~~~ 118 (562)
T PRK05326 96 LGVL-ITAGLTGLFAHWLLGLDWL 118 (562)
T ss_pred HHHH-HHHHHHHHHHHHHhcCCHH
Confidence 4333 33333 233455666543
No 51
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=65.92 E-value=1.3e+02 Score=31.16 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=63.4
Q ss_pred HHHHHhhchhHHHH-HHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHH
Q 018360 204 VGRKLIINPNTHAT-LLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALK 282 (357)
Q Consensus 204 ~~~~~~~nP~~ia~-ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~r 282 (357)
..++ ++-|.+++. +.|++++-. ..|. +++ .+.+..++...+.+.||.+|..++... .++..|........-
T Consensus 23 l~~r-l~~p~ilg~ilaGillGP~--~lg~-i~~--~~~i~~laelGvv~LLF~iGLel~~~~--l~~~~~~~~~~g~~~ 94 (601)
T PRK03659 23 LAQR-LGIGAVLGYLLAGIAIGPW--GLGF-ISD--VDEILHFSELGVVFLMFIIGLELNPSK--LWQLRRSIFGVGAAQ 94 (601)
T ss_pred HHHH-hCCChHHHHHHHHHHhccc--cccC-CCc--HHHHHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHH
Confidence 3455 688888876 457777643 1132 221 134668899999999999999997653 223344444444443
Q ss_pred HHHHHHHHHHHHHHhCCchhhHH-HhhhhhcCCcchHHHHHHHHh
Q 018360 283 FIVGPALMAASSFAIGLRGTLFK-IAFVQAALPQGIVPFVFAKEY 326 (357)
Q Consensus 283 li~~Pli~~~~~~~~~~~~~~~~-~~vl~~a~P~a~~~~i~a~~~ 326 (357)
.++.-++...+.+.++.+..... ..+..+...+|+..-++.++-
T Consensus 95 v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 95 VLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33332233334445566543222 223334456666655555543
No 52
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=61.31 E-value=1.8e+02 Score=29.67 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=60.6
Q ss_pred HHHHHHhhchhHHHH-HHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHH
Q 018360 203 TVGRKLIINPNTHAT-LLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMAL 281 (357)
Q Consensus 203 ~~~~~~~~nP~~ia~-ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~ 281 (357)
...|+ ++.|.+++- +.|++++-. ..|. +++ .+..+.+++...-+-||..|..++... .++..+........
T Consensus 23 ~l~~r-l~~P~ivg~IlaGillGp~--~lg~-~~~--~~~~~~la~lGli~llF~~Gle~d~~~--l~~~~~~~~~~~~~ 94 (558)
T PRK10669 23 MLANR-LRISPLVGYLLAGVLAGPF--TPGF-VAD--TKLAPELAELGVILLMFGVGLHFSLKD--LMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHH-cCCCHHHHHHHHHHhhCcc--cccc-ccc--hHHHHHHHHHHHHHHHHHhHhcCCHHH--HHHHhhHHHHHHHH
Confidence 34555 688887775 566776643 1122 222 256778999999999999999997653 12222333333344
Q ss_pred HHHHHHHHHHHHHHHhCCchhhH-HHhhhhhcCCcchHHHHHHH
Q 018360 282 KFIVGPALMAASSFAIGLRGTLF-KIAFVQAALPQGIVPFVFAK 324 (357)
Q Consensus 282 rli~~Pli~~~~~~~~~~~~~~~-~~~vl~~a~P~a~~~~i~a~ 324 (357)
-.++.-++..++.+.++.+.... ......+.+.+++..-++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e 138 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEE 138 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433333344455556443221 12223344444444444444
No 53
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=60.37 E-value=1.6e+02 Score=28.22 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Q 018360 272 TRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLPVTLA 350 (357)
Q Consensus 272 ~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~tl~i 350 (357)
|......++.-+...-+..+.....-..|+. .-..+++|-+... ..+|++||-|...+|-.-..=-++-..+.|+
T Consensus 87 w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~----Ta~~gs~PGgas~m~~iA~d~gAd~~~VAl~Q~lRvl~Vvl~vpl 162 (352)
T COG3180 87 WPIVLVVLLLTLLSSILLGWLLKRFSILPGN----TAFLGSSPGGASAMVSIAQDYGADLRLVALMQYLRVLFVVLLAPL 162 (352)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----hhhHhcCCchHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433335544 2356788988877 7899999999999987776666666666666
Q ss_pred HHH
Q 018360 351 YYF 353 (357)
Q Consensus 351 ~~~ 353 (357)
...
T Consensus 163 v~~ 165 (352)
T COG3180 163 VSR 165 (352)
T ss_pred HHH
Confidence 543
No 54
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=59.06 E-value=86 Score=30.38 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhhhhhccccChhh---hhHHHHHHHHHHh-HHHHHHHHhhcCCCC----cchHHHHHHHHHHHHHHHHHH
Q 018360 16 PLYVAMLLAYISVKWWKLFTPDQ---CAGINKFVAKFSI-PLLSFQVISKNNPYK----MNLKLIYADFLQKLLAFLVLV 87 (357)
Q Consensus 16 pi~lii~lG~~~~r~~~~~~~~~---~~~L~~lv~~i~l-Palif~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 87 (357)
|+-.++.+-.++ |..|+.++|. .+.++++.-+=+. |.+.=..++-+|+++ ..|..++.++...+.....++
T Consensus 292 ~va~MIil~a~l-k~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~ 370 (438)
T COG3493 292 PVAFMIILVAIL-KAANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGA 370 (438)
T ss_pred hHHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 333445555555 5678888763 4566666554333 333333455566554 257777766666666677788
Q ss_pred HHHHhhcCCchhhHHHh-hhccccccchhh
Q 018360 88 ALTKISSRSGLRWIITG-LSLSSLPNSLIL 116 (357)
Q Consensus 88 ~~~~~~~~~~~~~~i~~-~~~~~~~N~~~l 116 (357)
+.+|+.+--+.+.+++. ++.+..+-+|..
T Consensus 371 f~grl~~~YPVEaAI~aglC~a~~GGtGDv 400 (438)
T COG3493 371 FVGRLMGFYPVEAAITAGLCMANMGGTGDV 400 (438)
T ss_pred HHHHHhcCCchHHHHHHhHHhcCCCCCCch
Confidence 99999887777777765 554555666655
No 55
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=56.72 E-value=1.9e+02 Score=31.10 Aligned_cols=109 Identities=12% Similarity=-0.017 Sum_probs=63.2
Q ss_pred chhHHHHHHHHHHHHhhhccCCCCc--HHHHHHHHHHHhhHHHHHHHHhhhhhccCCc----ccccchHHHHHHHHHHHH
Q 018360 211 NPNTHATLLGLIWASIEFRWGVKLP--AIIDQSVRILSNGGLGMAMFSLGLFMASRPS----IIACGTRMAAVAMALKFI 284 (357)
Q Consensus 211 nP~~ia~ilgli~~~~~~~~~~~lP--~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~----~~~~~~~~~~~~~~~rli 284 (357)
+-.+-+.+.|+.++-. +. .+ .....+-..+......+..+.+|+.+..... .....|+.++.+.++=++
T Consensus 265 SGfLAVFVAGl~~gn~----~~-~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifV 339 (810)
T TIGR00844 265 DDLLVSFFAGTAFAWD----GW-FAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFL 339 (810)
T ss_pred ccHHHHHHHHHHHhcc----cc-hhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHH
Confidence 4455555666666643 21 01 1122344555566677889999999865421 001234555555555555
Q ss_pred HHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHH
Q 018360 285 VGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAK 324 (357)
Q Consensus 285 ~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~ 324 (357)
.=|.+++......+....+...+++-+.-|-++.++.|+.
T Consensus 340 rRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl~ 379 (810)
T TIGR00844 340 RRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAAI 379 (810)
T ss_pred HHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHHH
Confidence 5666665544344434456777888899999988876654
No 56
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=55.75 E-value=76 Score=29.76 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=59.3
Q ss_pred HhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCch-----h-hHHHhhhhhcCCcchHH
Q 018360 246 SNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRG-----T-LFKIAFVQAALPQGIVP 319 (357)
Q Consensus 246 g~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~-----~-~~~~~vl~~a~P~a~~~ 319 (357)
......+-+++.|.+++.+. .....|+-......|.++.-++.+.+..++|.|+ . -...+.+.+|+=-....
T Consensus 47 ~~~il~~~l~~~Ga~I~~k~--~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNgg 124 (314)
T TIGR00793 47 TVPILAVWFFCMGASIDLSA--TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGG 124 (314)
T ss_pred cHHHHHHHHHHhCCeeeecc--cchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHH
Confidence 34455667899999998763 2345677777788999999999999998888776 2 23345566666544444
Q ss_pred HH--HHHHhCCCchhHH
Q 018360 320 FV--FAKEYNVHPDILS 334 (357)
Q Consensus 320 ~i--~a~~~~~~~~~aa 334 (357)
.. +..+||.++|..|
T Consensus 125 LY~aL~~qyGd~~D~gA 141 (314)
T TIGR00793 125 LYASIMQQYGTKEEAGA 141 (314)
T ss_pred HHHHHHHHcCCHhhhhh
Confidence 33 4779996655444
No 57
>COG2855 Predicted membrane protein [Function unknown]
Probab=55.71 E-value=1.9e+02 Score=27.54 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHH
Q 018360 232 VKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAA 276 (357)
Q Consensus 232 ~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~ 276 (357)
..+|+-+.+.++.++....-++|.++|.+.+..+ ..+..-|...
T Consensus 270 ~~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~-l~~~G~kpl~ 313 (334)
T COG2855 270 GLIPAEVVSALVTLSTFLLAMAMAALGLTTHIKA-LKKAGGKPLL 313 (334)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhccccCHHH-HHHcCccHHH
Confidence 3489999999999999999999999999997653 2333444443
No 58
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=53.82 E-value=2e+02 Score=27.26 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=71.6
Q ss_pred HHHH-HHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHH---HHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhh
Q 018360 236 AIID-QSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAA---VAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQA 311 (357)
Q Consensus 236 ~~i~-~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~---~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~ 311 (357)
++.. +..+.++..+....++.+-...+...+....+..... ..++.-....-.+++.....+++|.+..+++..+.
T Consensus 205 ~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~ 284 (328)
T TIGR00832 205 EWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTG 284 (328)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehh
Confidence 4444 4545555555544444444444433212222222222 23445566666777777778899999999999999
Q ss_pred cCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Q 018360 312 ALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLA 350 (357)
Q Consensus 312 a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i 350 (357)
++=-+.....+|..+=.+.+.++....+..++=++-+-.
T Consensus 285 g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e~~~~~~ 323 (328)
T TIGR00832 285 ASNNFELAIAVAISLFGLNSGAALATVVGPLIEVPVMLS 323 (328)
T ss_pred hhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhehhhhhe
Confidence 998888888888877555677777777777766655443
No 59
>PRK05326 potassium/proton antiporter; Reviewed
Probab=50.85 E-value=1.8e+02 Score=29.82 Aligned_cols=136 Identities=15% Similarity=0.062 Sum_probs=71.7
Q ss_pred hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHH-HHHHHHHHHHHHHH
Q 018360 210 INPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRM-AAVAMALKFIVGPA 288 (357)
Q Consensus 210 ~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~-~~~~~~~rli~~Pl 288 (357)
.++.+-+.+.|++++-. +.+--..+.+..+.+++...|+..+.+|+.+.... . ...+.. .....+.-++.=|+
T Consensus 244 ~Sg~la~~iaGl~l~n~----~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~-l-~~~~~~~l~i~~~l~~vaR~l 317 (562)
T PRK05326 244 GSGFLAVYLAGLVLGNR----PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSR-L-LDIALPALLLALFLILVARPL 317 (562)
T ss_pred CcHHHHHHHHHHHHhCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777633 22222457788888889999999999999986542 1 111111 11111112222233
Q ss_pred HHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHH---hCCCc-hh----HHHHHHHHHHHHHHHHHHHHH
Q 018360 289 LMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKE---YNVHP-DI----LSTGVLFGMIITLPVTLAYYF 353 (357)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~---~~~~~-~~----aa~~v~~stllsi~tl~i~~~ 353 (357)
-.+.....++.+ +....++-++.|=+..+.++|.. .|... +. +-.++.+|+++--.+++-..-
T Consensus 318 ~v~l~~~~~~~~--~~e~~~i~~~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~ 388 (562)
T PRK05326 318 AVFLSLLPFRFN--LREKLFISWVGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAAR 388 (562)
T ss_pred HHHHHHccCCCC--HhhhheeeeecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHH
Confidence 333333333433 33445555567888877777642 33321 22 222344555555556555443
No 60
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=47.80 E-value=35 Score=21.41 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=18.9
Q ss_pred HHHHHhhchhHHHHHHHHHHHHh
Q 018360 204 VGRKLIINPNTHATLLGLIWASI 226 (357)
Q Consensus 204 ~~~~~~~nP~~ia~ilgli~~~~ 226 (357)
..-.++.-|.++|.++|+++++-
T Consensus 5 l~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 5 LAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999875
No 61
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.78 E-value=19 Score=25.84 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=25.7
Q ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHH
Q 018360 5 VDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKF 45 (357)
Q Consensus 5 ~~~~~~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~l 45 (357)
.+|+-.|...+-+...|.+||+..| +-+. ....+++.+
T Consensus 2 ~t~lltFg~Fllvi~gMsiG~I~kr--k~I~-GSCGGi~al 39 (77)
T COG2991 2 TTFLLTFGIFLLVIAGMSIGYIFKR--KSIK-GSCGGIAAL 39 (77)
T ss_pred ccHHHHHHHHHHHHHHHhHhhheec--cccc-cccccHHhh
Confidence 4577778888888899999999843 3332 245555543
No 62
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=46.12 E-value=2.7e+02 Score=26.55 Aligned_cols=63 Identities=22% Similarity=0.154 Sum_probs=44.7
Q ss_pred chhHH-HHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHH
Q 018360 211 NPNTH-ATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAM 279 (357)
Q Consensus 211 nP~~i-a~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~ 279 (357)
-|.++ +.+...+++-. + .+|+...+.++.+++...-++|..+|...+.++ ..+..+|+.....
T Consensus 251 ~P~FvlgFl~~~~l~S~----~-~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~-l~~~G~kp~~~g~ 314 (335)
T TIGR00698 251 IPWFAVLFIGVAIFNSF----D-LLPGEVVQALVPLDTFLLATAMAALGLTTNVSA-VKKAGVKPLFASY 314 (335)
T ss_pred CChHHHHHHHHHHHHHh----h-hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHcCchHHHHHH
Confidence 35544 44444444544 3 488999999999999999999999999998764 3445666655543
No 63
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=42.01 E-value=3.3e+02 Score=26.32 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCchhhHHH-hhh-ccccccchhhhHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 83 FLVLVALTKISSRSGLRWIIT-GLS-LSSLPNSLILGIPLLRAMYSEEA-ALLLAQIVVLQSLIWYNLLLFLFE 153 (357)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~-~~~-~~~~~N~~~lg~Pi~~~l~g~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 153 (357)
..++..+.+++..++.-.... +.. ....+..+.+| |..+..+|-++ ...+..+..+..+.---+|..+.+
T Consensus 108 ~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g-~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~ 180 (368)
T PF03616_consen 108 NIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFG-PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIAN 180 (368)
T ss_pred HHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHH-HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555444322111 111 24556666676 67776666543 333333344443333334444443
No 64
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=39.04 E-value=3.8e+02 Score=26.11 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhh------HHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHH
Q 018360 214 THATLLGLIWASIEFRWGVKLPAIIDQSVRILSNG------GLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGP 287 (357)
Q Consensus 214 ~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~------~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~P 287 (357)
+++....+.+.++ .-++|+.+.+.+..+.+. .+-+.++.+|..++..+ .=+++.|
T Consensus 235 iva~a~~f~~~lt----~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~~a---------------~ilil~P 295 (379)
T COG1593 235 IVAAAAAFAWLLT----VEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDLTA---------------AILILTP 295 (379)
T ss_pred HHHHHHHHHHHHH----HhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccHHH---------------HHHHHHH
Confidence 3344444444444 557888888888776654 44456667777775432 2234455
Q ss_pred HHHHHHHHHhCCchhhHHHhhhhhc-----C-CcchHHHHHHHHhCCCchhHHHHH
Q 018360 288 ALMAASSFAIGLRGTLFKIAFVQAA-----L-PQGIVPFVFAKEYNVHPDILSTGV 337 (357)
Q Consensus 288 li~~~~~~~~~~~~~~~~~~vl~~a-----~-P~a~~~~i~a~~~~~~~~~aa~~v 337 (357)
.+.=.. ...|.||...-++++... + |.+.+.++-+.--|.+.+.....+
T Consensus 296 il~Pi~-~~~GIDPvhfGvv~v~Nl~IGliTPPvG~~Lfv~s~V~~~~~~~~~k~i 350 (379)
T COG1593 296 ILLPIA-AALGIDPVHFGVVFVLNLSIGLITPPVGMVLFVASAVGKVPIEAVIKAI 350 (379)
T ss_pred HHHHHH-HHhCCCceeeHHHHHHHHHhhCCCCCcchhHHHHHhhcCCCHHHHHHHH
Confidence 543332 345889887665554432 3 567667777777776666655443
No 65
>PRK03818 putative transporter; Validated
Probab=37.59 E-value=4.7e+02 Score=26.84 Aligned_cols=133 Identities=13% Similarity=0.174 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcc----cccchHHHHHHHHHHHHHHHHH
Q 018360 214 THATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSI----IACGTRMAAVAMALKFIVGPAL 289 (357)
Q Consensus 214 ~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~----~~~~~~~~~~~~~~rli~~Pli 289 (357)
--+.+.|++++......+.++|+...++++.+| ++||+-..-++..+.. .+..++......+. .++..++
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~g-----l~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~-~~~~~~~ 107 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFG-----LILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLI-VILGGLV 107 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHH-----HHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHH-HHHHHHH
Confidence 445667777776322227778887777777554 4444444434333211 11223333322222 2223333
Q ss_pred HHHHHHHhCCchhhHHHhhhhhcC--CcchHHHHHH-HHhCCC---chhHHHHHHHHHHHHHHHHHHHHH
Q 018360 290 MAASSFAIGLRGTLFKIAFVQAAL--PQGIVPFVFA-KEYNVH---PDILSTGVLFGMIITLPVTLAYYF 353 (357)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~vl~~a~--P~a~~~~i~a-~~~~~~---~~~aa~~v~~stllsi~tl~i~~~ 353 (357)
.+.+.+++++|+. ..+-++..++ +|+.....=+ +..+.+ .+..+..-..++.+.++.+-+.+.
T Consensus 108 ~~~~~~~~~~~~~-~~~G~~aGa~T~tp~l~aa~~~~~~~~~~~~~~~~~a~gYa~~Yp~g~i~~il~~~ 176 (552)
T PRK03818 108 TAILHKLFGIPLP-VMLGIFSGAVTNTPALGAGQQILRDLGTPGDLVDQMGMGYAMAYPFGICGILLSMW 176 (552)
T ss_pred HHHHHHHhCCCHH-HHHHHhhccccccHHHHHHHHHHhccCCCccccCCcchhhHhHhHHHHHHHHHHHH
Confidence 4555677888865 3344444442 2222222111 111212 134555566666666655544443
No 66
>PRK04972 putative transporter; Provisional
Probab=35.88 E-value=5e+02 Score=26.67 Aligned_cols=121 Identities=7% Similarity=0.057 Sum_probs=70.1
Q ss_pred HHHHHHHHhhhh--hhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 018360 16 PLYVAMLLAYIS--VKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKN--NPYKMNLKLIYADFLQKLLAFLVLVALTK 91 (357)
Q Consensus 16 pi~lii~lG~~~--~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (357)
|++.=+.+|++= ++..+.+++.+...+..+=+.+|+=++=.++=.+- .+.+..|..++..++.+++..+++++++|
T Consensus 416 ~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~ 495 (558)
T PRK04972 416 LLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGA 495 (558)
T ss_pred HHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777762 11223356767778888888888887766643321 11222344444445555666666777775
Q ss_pred h-hcCCchhhHHHhhhccccccchhhhHHHHHHhcccc--hhHHHHHHHHHH
Q 018360 92 I-SSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE--AALLLAQIVVLQ 140 (357)
Q Consensus 92 ~-~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~--~~~~~~~~~~~~ 140 (357)
+ +|.+..+ ..+.+ +++..|+-.++...=. -+++ .+.|+..|-..+
T Consensus 496 ~~~k~~~~~-~~G~~-aG~~t~~~~l~~~~~~--~~~~~~~~gYa~~yp~~~ 543 (558)
T PRK04972 496 YVLRMNRAL-LFGAI-MGARTCAPAMEIISDT--ARSNIPALGYAGTYAIAN 543 (558)
T ss_pred HHHcCCHHH-HHHHH-hCCCCCcHHHHHHHhh--cCCCCcccccHhHHHHHH
Confidence 5 5666443 34455 4777887777665433 3444 355776665443
No 67
>COG5546 Small integral membrane protein [Function unknown]
Probab=34.15 E-value=78 Score=22.94 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=28.1
Q ss_pred hhchhHHHHHHHHHHHHhhh---ccCCCCcHHHHHHHHHH
Q 018360 209 IINPNTHATLLGLIWASIEF---RWGVKLPAIIDQSVRIL 245 (357)
Q Consensus 209 ~~nP~~ia~ilgli~~~~~~---~~~~~lP~~i~~~l~~l 245 (357)
++||..+-.++|.++-+..+ .+|+++|.-+.+.++.+
T Consensus 8 mknkvf~vail~~ifllAQqll~~fGI~~~~nl~d~~n~i 47 (80)
T COG5546 8 MKNKVFLVAILGAIFLLAQQLLGWFGIKLPSNLADIANTI 47 (80)
T ss_pred ecCceehHHHHHHHHHHHHHHHHHeeeecchhHHHHHHHH
Confidence 68999999999999988865 35788887766555443
No 68
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=31.96 E-value=3.2e+02 Score=23.22 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhhhhhhcccc-ChhhhhHHHHHHHHHHhHHHHHHHHhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 018360 15 VPLYVAMLLAYISVKWWKLF-TPDQCAGINKFVAKFSIPLLSFQVISKN--NPYKMNLKLIYADFLQKLLAFLVLVALTK 91 (357)
Q Consensus 15 lpi~lii~lG~~~~r~~~~~-~~~~~~~L~~lv~~i~lPalif~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (357)
-+++.=+.+|++- |+.... +......+..+-+.+|+=++=.++=.+- .+++.-++......+.+.+..++++.+.|
T Consensus 28 G~L~vgL~~G~~~-~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~ 106 (169)
T PF06826_consen 28 GVLFVGLILGALG-RTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGR 106 (169)
T ss_pred HHHHHHHHHHHhh-hccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788885 333333 3444455666555555554443322111 11111355555555666677778888888
Q ss_pred -hhcCCchhhHHHhhhccccccchhhhHHHHH-Hhcccch--hHHHHHH
Q 018360 92 -ISSRSGLRWIITGLSLSSLPNSLILGIPLLR-AMYSEEA--ALLLAQI 136 (357)
Q Consensus 92 -~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~-~l~g~~~--~~~~~~~ 136 (357)
++|.|.... .+.+ +.+..|+--++...=. .=-+... +.|...|
T Consensus 107 ~~~~l~~~~~-~G~~-aGa~T~tp~L~~A~~~~~~~~~~~~~vgYa~~Y 153 (169)
T PF06826_consen 107 YLFKLNPGIA-AGIL-AGALTSTPALAAAQEAISDSGIPAIAVGYAVTY 153 (169)
T ss_pred HHcCCCHHHH-HHHH-HccccCcHHHHHHHHhhhcCCCchhhhhHHHHH
Confidence 567665443 3555 4778888777665433 1122333 4555554
No 69
>PRK01658 holin-like protein; Validated
Probab=31.44 E-value=96 Score=24.90 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 38 QCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKI 92 (357)
Q Consensus 38 ~~~~L~~lv~~i~lPalif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (357)
..+.+.+-.--+|.|+.+=-.-.-..+.+..+..+.+..+++++.........++
T Consensus 58 ~a~~Ll~~m~llFVPa~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~ 112 (122)
T PRK01658 58 GAETLLAELPLFFIPSAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQL 112 (122)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888653322211122223455555667777766555444443
No 70
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=27.85 E-value=3.8e+02 Score=22.77 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccC--CcccccchHHHHHHHHHHHHHHHHHHHHH
Q 018360 216 ATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASR--PSIIACGTRMAAVAMALKFIVGPALMAAS 293 (357)
Q Consensus 216 a~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~--~~~~~~~~~~~~~~~~~rli~~Pli~~~~ 293 (357)
..+.|++++....+.+...|....+.++.+| .-+-+..+|.+-... ...++..++..... +.=.++..++.+.+
T Consensus 29 ~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~G---L~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~-~~i~~~~~~~~~~~ 104 (169)
T PF06826_consen 29 VLFVGLILGALGRTGPIFLPISAPSFLRQLG---LALFLAAVGLSAGPGFFSSLKRGGLKLLLLG-VIITLVPLLIALVI 104 (169)
T ss_pred HHHHHHHHHHhhhccCCCCCccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence 4456666666522222335666666666654 223344444443221 10111222222222 22233344445555
Q ss_pred HH-HhCCchhhHHHhhhhhc--CCcchHHHHHHHHh--CCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 294 SF-AIGLRGTLFKIAFVQAA--LPQGIVPFVFAKEY--NVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 294 ~~-~~~~~~~~~~~~vl~~a--~P~a~~~~i~a~~~--~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
.+ ++++|+... .-++..+ .||+.. .|++. +.+.+..+..-..++.++.+...++..++
T Consensus 105 ~~~~~~l~~~~~-~G~~aGa~T~tp~L~---~A~~~~~~~~~~~~~vgYa~~Yp~g~i~~il~~~~i 167 (169)
T PF06826_consen 105 GRYLFKLNPGIA-AGILAGALTSTPALA---AAQEAISDSGIPAIAVGYAVTYPFGVIGVILFVQLI 167 (169)
T ss_pred HHHHcCCCHHHH-HHHHHccccCcHHHH---HHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55 788886533 3334433 233322 23333 22323333566777777777666665543
No 71
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=27.28 E-value=7e+02 Score=25.65 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhhhhhcc---ccChhhhhHHHHHHHHHHhHHHHHHHHhhc--CCCCcchHHHHHHHHHHHHHHHHHHHH
Q 018360 15 VPLYVAMLLAYISVKWWK---LFTPDQCAGINKFVAKFSIPLLSFQVISKN--NPYKMNLKLIYADFLQKLLAFLVLVAL 89 (357)
Q Consensus 15 lpi~lii~lG~~~~r~~~---~~~~~~~~~L~~lv~~i~lPalif~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (357)
-+++.=+.+|++- |+.. .+++.....+..+=+.+|+=++=.++=.+- .+.+.-+...+..++.+++..++++++
T Consensus 420 g~l~~gl~~g~~~-~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~ 498 (562)
T TIGR03802 420 GALISGLVFGWLR-SKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLI 498 (562)
T ss_pred HHHHHHHHHHHhc-ccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666662 3222 255555566777777777766654432211 111222444444455555666677777
Q ss_pred HH-hhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc--hhHHHHHHHHH
Q 018360 90 TK-ISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE--AALLLAQIVVL 139 (357)
Q Consensus 90 ~~-~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~--~~~~~~~~~~~ 139 (357)
.| ++|.+.... .+.+ +++..|+--++...=. -+++ .+.|...|-+.
T Consensus 499 ~~~~~~~~~~~~-~G~~-aG~~t~t~~l~~a~~~--~~~~~~~~gYa~~Yp~~ 547 (562)
T TIGR03802 499 GKYVLKYDPALL-LGAL-AGARTATPALGAVLER--AGSSVPALGYTITYALG 547 (562)
T ss_pred HHHHhCCCHHHH-HHHh-hccCCCcHHHHHHHHh--cCCCCcccchHhHHHHH
Confidence 75 567665432 3445 4788888888766432 3443 45566666443
No 72
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=26.20 E-value=40 Score=32.33 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=7.7
Q ss_pred hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHH-hhHHHHHHHHhhhhhccCCcc-cccchHHHHHHHHHHHHHHH
Q 018360 210 INPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILS-NGGLGMAMFSLGLFMASRPSI-IACGTRMAAVAMALKFIVGP 287 (357)
Q Consensus 210 ~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg-~~~~pl~L~~lG~~L~~~~~~-~~~~~~~~~~~~~~rli~~P 287 (357)
.+|.+-+.+.|++++-. +..+.+.+-++.+. +...|+-...+|+.++...-. ....+.........+++.=+
T Consensus 234 ~s~~l~af~~Gl~~~~~------~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~ 307 (380)
T PF00999_consen 234 LSGILGAFIAGLILSNS------PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKF 307 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeeeehccccc------cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhh
Confidence 56777788889988832 22223555566666 899999999999999854310 12334444444444444444
Q ss_pred HHHHHHHHHhCCchhhHHHhhhhhcC-CcchHHHHHH---HHhCCCchhHHHHHHHHHHHHHHHHH
Q 018360 288 ALMAASSFAIGLRGTLFKIAFVQAAL-PQGIVPFVFA---KEYNVHPDILSTGVLFGMIITLPVTL 349 (357)
Q Consensus 288 li~~~~~~~~~~~~~~~~~~vl~~a~-P~a~~~~i~a---~~~~~~~~~aa~~v~~stllsi~tl~ 349 (357)
+..+......+.+.. ....+-..+ |-+.....++ .++|..++.....+....+++.+.-|
T Consensus 308 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~ 371 (380)
T PF00999_consen 308 IGVYLASRLFGIPWK--EALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAG 371 (380)
T ss_dssp -----------------HHHHTTTTSS--HHHHHHHHHHHHH------------------------
T ss_pred ceeehhhhhcccccc--hhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHH
Confidence 444444444443333 223333333 3555554444 34443333334445555555544333
No 73
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=26.01 E-value=1.2e+02 Score=24.66 Aligned_cols=58 Identities=12% Similarity=-0.018 Sum_probs=32.4
Q ss_pred ccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 018360 31 WKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVAL 89 (357)
Q Consensus 31 ~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (357)
.+++++ ..+.+-+...-+|.|+.+=..-+..-.++..++.+....+++++.+...-..
T Consensus 53 l~wv~~-~a~~Ll~~m~llFVPa~VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~ 110 (128)
T COG1380 53 LEWVER-GATFLLRNMALLFVPAGVGVMNYFDLLAADGLPILVVIIISTLLVLLVTGWV 110 (128)
T ss_pred HHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 4667777777889998764332221122223555555667777765544433
No 74
>PRK01821 hypothetical protein; Provisional
Probab=24.21 E-value=1.7e+02 Score=23.87 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 38 QCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKI 92 (357)
Q Consensus 38 ~~~~L~~lv~~i~lPalif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (357)
..+.+-+-.--+|.|+-+=-.-.-..+.+..+..+.+..+++++.+.......++
T Consensus 63 ~a~~LL~~m~LfFVPa~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~ 117 (133)
T PRK01821 63 GCSLLIRYMALLFVPIGVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHY 117 (133)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888753322222122223455555667777766555444443
No 75
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=22.63 E-value=1.6e+02 Score=28.03 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Q 018360 215 HATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASS 294 (357)
Q Consensus 215 ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~ 294 (357)
+..++|..++-. .-. +.++.+.-.+...|..-+.+|..++... .....++-++..+. =.++.+.+.+...
T Consensus 178 lplliG~~lgnl----~~~----l~~~~~~Gi~~lLp~~~~~lG~~l~lq~-i~~~G~~GilL~~~-~~~~t~~~~~~~~ 247 (326)
T PRK05274 178 LPLLVGFILGNL----DPE----LRQFLGKAVPVLIPFFAFALGNGIDLGT-IITAGLSGILLGVA-VVAVTGIPLYLAD 247 (326)
T ss_pred HHHHHHHHHHhH----HHh----hHHHhcCCcEEEHHHHHHHHhcceeHhH-HHhcCCcchhhhhh-HhhccchhhHhHh
Confidence 566666666543 222 2333333333488888889999998753 22333433332221 1222344444444
Q ss_pred HHhCCchhhHHHhhhh-----hcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360 295 FAIGLRGTLFKIAFVQ-----AALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL 354 (357)
Q Consensus 295 ~~~~~~~~~~~~~vl~-----~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~ 354 (357)
.+++.++...-..... .|.|.|+. .....++..++.++..+....+++.+.-|+....
T Consensus 248 Rl~~~~~g~~g~a~~ttaG~aic~pAAva--a~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~ 310 (326)
T PRK05274 248 RLIGGGNGVAGAAAGSTAGNAVATPAAVA--AADPSFAPFAPAATAQVAAAVIVTAILAPILTAW 310 (326)
T ss_pred heeecCCCcchHHHHHHHHHHHHHHHHHH--hhccccccchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444322222222 22333322 2222444555666666666777777777776544
No 76
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=22.33 E-value=7.6e+02 Score=24.36 Aligned_cols=123 Identities=10% Similarity=0.031 Sum_probs=70.0
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHH----HHhhHHHHHHHHhhhhhccCCcccccchHHHHHHH
Q 018360 204 VGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRI----LSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAM 279 (357)
Q Consensus 204 ~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~----lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~ 279 (357)
.+|+-+--|.+.+.+..-.+... |+ +|+...+..+. -+-...-.+.++.|.-|+-.++...+...+.....
T Consensus 53 i~k~yiGGg~il~~f~ps~Lv~~----~~-ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~i 127 (414)
T PF03390_consen 53 ILKDYIGGGAILCIFVPSALVYF----GL-IPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPI 127 (414)
T ss_pred hhhccCChHHHHHHHHHHHHHHc----CC-CCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHH
Confidence 45555677888888888888876 66 66554444433 34456777888888888654322222233333333
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcc------hHHHHHHHHhCCCch
Q 018360 280 ALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQG------IVPFVFAKEYNVHPD 331 (357)
Q Consensus 280 ~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a------~~~~i~a~~~~~~~~ 331 (357)
+.-.+..-++..+....+|.+.......+....|=-+ ..+-+|++..|.|++
T Consensus 128 l~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~ 185 (414)
T PF03390_consen 128 LGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAE 185 (414)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHH
Confidence 3344444444444456677766544333332222211 245689999998874
No 77
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=21.89 E-value=30 Score=32.36 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 018360 271 GTRMAAVAMALKFIVGPALMAASS 294 (357)
Q Consensus 271 ~~~~~~~~~~~rli~~Pli~~~~~ 294 (357)
+.|..+..++.|+++.|+....-.
T Consensus 211 ~~~~l~~~s~~R~~fiPlf~~cn~ 234 (309)
T PF01733_consen 211 SPRWLWILSLLRFLFIPLFLLCNV 234 (309)
T ss_dssp ------------------------
T ss_pred ccccHHHHHHHHHHHHHHHHHHHh
Confidence 455666778999999999988743
No 78
>PRK02975 putative common antigen polymerase; Provisional
Probab=21.79 E-value=1.2e+02 Score=29.11 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=32.6
Q ss_pred hhhhh---hhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcC
Q 018360 24 AYISV---KWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNN 63 (357)
Q Consensus 24 G~~~~---r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~ 63 (357)
|+++. +..++++.+.+....|--+|+++||++..-+.+.+
T Consensus 136 GfLLFkL~sYSqIFSs~VsGvaLKRFFYFfIPAmLv~yFL~~t 178 (450)
T PRK02975 136 GFLLFKLHSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQD 178 (450)
T ss_pred cHHhhhHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhccc
Confidence 66654 35678888888999999999999999999887654
No 79
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=20.94 E-value=2.1e+02 Score=22.68 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHH-HHHHHHhhcC
Q 018360 13 ACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPL-LSFQVISKNN 63 (357)
Q Consensus 13 ~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPa-lif~~~~~~~ 63 (357)
+++|++.+++.=|-+.+ +++++...+++-++..-.++=- +..+.+.++.
T Consensus 37 SiFPlIaLvLavy~LyQ--~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraq 86 (117)
T PF07226_consen 37 SIFPLIALVLAVYCLYQ--RYLNHPMPEGTPKLALACFFLGLFGYSAFVRAQ 86 (117)
T ss_pred HHHHHHHHHHHHHHHHH--HHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777743 5666666666666655554443 4444566664
No 80
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=20.92 E-value=1.2e+03 Score=26.00 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=16.3
Q ss_pred HHHHHHHhhchhHHHHHHHHHHH
Q 018360 202 LTVGRKLIINPNTHATLLGLIWA 224 (357)
Q Consensus 202 ~~~~~~~~~nP~~ia~ilgli~~ 224 (357)
+..++.+.+||.++...++..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~ 237 (1140)
T PRK06814 215 ITLLKYAKADKRIWLAILGISWF 237 (1140)
T ss_pred HHHHHHHhcCchHHHHHHHHHHH
Confidence 34567778899988888775543
No 81
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=20.91 E-value=6.7e+02 Score=26.99 Aligned_cols=114 Identities=12% Similarity=0.169 Sum_probs=68.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc-chHHHHHH-HHHHHHHHHHHHHHHHhhcCCchhhHHHhhhccccccch
Q 018360 37 DQCAGINKFVAKFSIPLLSFQVISKNNPYKM-NLKLIYAD-FLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSL 114 (357)
Q Consensus 37 ~~~~~L~~lv~~i~lPalif~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~ 114 (357)
.-.+.+..++..+++|+-+..+-.+.+.... .|...... ......-++.....+.++|.+.++... ++ ..+++-|
T Consensus 302 ~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~--l~-~lm~~kg 378 (769)
T KOG1650|consen 302 ALIEKLEDLVSGLLLPLYFAISGLKTDISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLA--LG-LLMSTKG 378 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH--HH-HHHHhhh
Confidence 5677889999999999999998888876533 23332222 223333344444455666766555422 21 3445556
Q ss_pred hhhHHHHHHh-----cccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 115 ILGIPLLRAM-----YSEEAALLLAQIVVLQSLIWYNLLLFLFE 153 (357)
Q Consensus 115 ~lg~Pi~~~l-----~g~~~~~~~~~~~~~~~~~~~~l~~~l~~ 153 (357)
.+.+-+...- ..+++....+.+..+++.+.-++-..++.
T Consensus 379 l~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~ 422 (769)
T KOG1650|consen 379 LVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYD 422 (769)
T ss_pred HHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 6666555544 45666666777777777666666655553
No 82
>PRK03818 putative transporter; Validated
Probab=20.55 E-value=9.3e+02 Score=24.69 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhhhhhhc---cccChhhhhHHHHHHHHHHhHHHHHHHHhhc--C-CCCcchHHHHHHHHHHHHHHHHHHH
Q 018360 15 VPLYVAMLLAYISVKWW---KLFTPDQCAGINKFVAKFSIPLLSFQVISKN--N-PYKMNLKLIYADFLQKLLAFLVLVA 88 (357)
Q Consensus 15 lpi~lii~lG~~~~r~~---~~~~~~~~~~L~~lv~~i~lPalif~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (357)
-|++.=+.+|++= |+. +.+++.+...+..+=+.+|+=++=.++=.+- . .++.-+......++.+++..+++++
T Consensus 405 G~L~~gl~~g~~~-~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~ 483 (552)
T PRK03818 405 GPLIVALILGRIG-SIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGI 483 (552)
T ss_pred HHHHHHHHHHhcc-CCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888883 422 2467777788888888888877766543221 1 1222234333444555555666777
Q ss_pred HHH-hhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc--hhHHHHHH
Q 018360 89 LTK-ISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE--AALLLAQI 136 (357)
Q Consensus 89 ~~~-~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~--~~~~~~~~ 136 (357)
++| ++|.+... ..+.+ +++..|+--++...= ..-+++ .+.|+..|
T Consensus 484 ~~~~~~~~~~~~-~~G~~-aG~~t~tp~l~~a~~-~~~~~~~~~~gYa~~Y 531 (552)
T PRK03818 484 LARMLAKMNYLT-LCGML-AGSMTDPPALAFANN-LHPTSGAAALSYATVY 531 (552)
T ss_pred HHHHHHcCCHHH-HHHHH-hccCCCcHHHHHHhc-ccCCCCCcccchHHHH
Confidence 765 45766443 34555 477788877765422 112333 45566655
No 83
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=20.15 E-value=3.8e+02 Score=26.64 Aligned_cols=23 Identities=9% Similarity=0.067 Sum_probs=18.1
Q ss_pred HHHHHhhchhHHHHHHHHHHHHh
Q 018360 204 VGRKLIINPNTHATLLGLIWASI 226 (357)
Q Consensus 204 ~~~~~~~nP~~ia~ilgli~~~~ 226 (357)
..+.+++||.+|..-++-++-..
T Consensus 244 ~~~YVL~Nk~iW~la~a~vfvYi 266 (448)
T COG2271 244 FVKYVLKNKLIWLLALANVFVYV 266 (448)
T ss_pred HHHHHHcChHHHHHHHHHHHHHH
Confidence 46778999999988887766554
Done!