Query 018360
Match_columns 357
No_of_seqs 124 out of 1118
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:02:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.2 1.1E-10 3.7E-15 109.6 15.1 141 207-355 14-155 (332)
2 3zux_A Transporter, ASBTNM; tr 97.3 0.006 2E-07 56.8 14.6 69 72-142 231-301 (332)
3 2zy9_A Mg2+ transporter MGTE; 29.3 3.7E+02 0.013 25.4 11.3 100 252-353 358-464 (473)
4 2lx0_A Membrane fusion protein 17.9 1.1E+02 0.0039 16.7 2.6 24 6-29 4-27 (32)
5 4ev6_A Magnesium transport pro 12.9 1.9E+02 0.0066 26.0 4.5 21 45-65 284-304 (339)
6 2lat_A Dolichyl-diphosphooligo 12.2 2.5E+02 0.0085 16.6 3.2 27 1-27 1-29 (37)
7 2k1k_A Ephrin type-A receptor 10.5 2.4E+02 0.0082 16.7 2.8 20 10-29 17-36 (38)
8 2iub_A CORA, divalent cation t 9.3 1.9E+02 0.0064 26.4 3.1 21 45-65 308-328 (363)
9 1rkl_A Dolichyl-diphosphooligo 8.4 2.9E+02 0.01 16.2 2.5 12 1-12 1-12 (36)
10 2l2t_A Receptor tyrosine-prote 6.6 4.8E+02 0.016 16.0 3.1 20 14-33 20-39 (44)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.24 E-value=1.1e-10 Score=109.64 Aligned_cols=141 Identities=15% Similarity=0.090 Sum_probs=117.2
Q ss_pred HHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcc-cccchHHHHHHHHHHHHH
Q 018360 207 KLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSI-IACGTRMAAVAMALKFIV 285 (357)
Q Consensus 207 ~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~-~~~~~~~~~~~~~~rli~ 285 (357)
+.+.++..+..+++.+++.. .|+... .++..-....++.|+..|.+++..+-+ ..+++|........++++
T Consensus 14 ~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi 85 (332)
T 3zux_A 14 SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI 85 (332)
T ss_dssp HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45678888888888888887 333211 133344567889999999999876411 124667777889999999
Q ss_pred HHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360 286 GPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL 355 (357)
Q Consensus 286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l 355 (357)
.|++++++.+.++.+++....+++.+++|++..+.++++.+|+|.+.+...+.+||+++++++|+|.+++
T Consensus 86 ~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 86 MPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998899999999999999999999999999999999999999999999999999999998875
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.25 E-value=0.006 Score=56.82 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc--hhHHHHHHHHHHHH
Q 018360 72 IYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE--AALLLAQIVVLQSL 142 (357)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~--~~~~~~~~~~~~~~ 142 (357)
.....+...+.+.++|..+|.+|.++.++....+. ++..|+ -+|+++....||++ ......+|...|++
T Consensus 231 ~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e-~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i 301 (332)
T 3zux_A 231 FAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIE-VGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNI 301 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhh-hhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 33344555677888999999988776555333453 677888 59999999999633 33345556555543
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=29.27 E-value=3.7e+02 Score=25.39 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=54.7
Q ss_pred HHHHHhhhhhccCCc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-----hHHHhhhhhcCCcchHHHHHHH
Q 018360 252 MAMFSLGLFMASRPS--IIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGT-----LFKIAFVQAALPQGIVPFVFAK 324 (357)
Q Consensus 252 l~L~~lG~~L~~~~~--~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~-----~~~~~vl~~a~P~a~~~~i~a~ 324 (357)
..+++=|+....... ..+.-+|....+.+.=+++..+.+...+++.+ ... ....+.+..|.=.+....++.+
T Consensus 358 ~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~ 436 (473)
T 2zy9_A 358 ATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGH-PLLLPVVGVSLVLIVFFANLVGAMLPFLLR 436 (473)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTSHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544321 11123445555555555555555554444444 111 1222334445556667788899
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018360 325 EYNVHPDILSTGVLFGMIITLPVTLAYYF 353 (357)
Q Consensus 325 ~~~~~~~~aa~~v~~stllsi~tl~i~~~ 353 (357)
++|.||..++ ..++||+.=+..+.+++.
T Consensus 437 ~~~~DPa~~s-~p~itt~~D~~g~~~~~~ 464 (473)
T 2zy9_A 437 RLGVDPALVS-NPLVATLSDVTGLLIYLS 464 (473)
T ss_dssp HHTCCGGGSC-HHHHHHHHHHHHHHHHHH
T ss_pred HcCCCccccc-cchHHHHHHHHHHHHHHH
Confidence 9999997665 457777777666655543
No 4
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=17.92 E-value=1.1e+02 Score=16.70 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.3
Q ss_pred hHHHHHHhhHHHHHHHHHhhhhhh
Q 018360 6 DAYHVVAACVPLYVAMLLAYISVK 29 (357)
Q Consensus 6 ~~~~~~~~ilpi~lii~lG~~~~r 29 (357)
+.+.++...+.++...+.||++-|
T Consensus 4 tiweviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 4 TIWEVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888889999999854
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=12.92 E-value=1.9e+02 Score=25.96 Aligned_cols=21 Identities=14% Similarity=-0.107 Sum_probs=16.7
Q ss_pred HHHHHHhHHHHHHHHhhcCCC
Q 018360 45 FVAKFSIPLLSFQVISKNNPY 65 (357)
Q Consensus 45 lv~~i~lPalif~~~~~~~~~ 65 (357)
.+--+++|.-++.++.+.+++
T Consensus 284 iit~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 284 MVTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhhccCcCC
Confidence 345588999999999988765
No 6
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=12.21 E-value=2.5e+02 Score=16.63 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=14.4
Q ss_pred CchhhhHHHHHHh--hHHHHHHHHHhhhh
Q 018360 1 MISVVDAYHVVAA--CVPLYVAMLLAYIS 27 (357)
Q Consensus 1 ~~~~~~~~~~~~~--ilpi~lii~lG~~~ 27 (357)
|||.++.+...+. +.-+.++++.=|+.
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVlYH~v~ 29 (37)
T 2lat_A 1 MITDVQLAIFANMLGVSLFLLVVLYHYVA 29 (37)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888655443 23333444444443
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=10.50 E-value=2.4e+02 Score=16.66 Aligned_cols=20 Identities=0% Similarity=-0.001 Sum_probs=13.5
Q ss_pred HHHhhHHHHHHHHHhhhhhh
Q 018360 10 VVAACVPLYVAMLLAYISVK 29 (357)
Q Consensus 10 ~~~~ilpi~lii~lG~~~~r 29 (357)
++..++-+.++.+++|++.|
T Consensus 17 VvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 17 IFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred ehHHHHHHHHHHHHHHHHee
Confidence 34455667778888888754
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=9.32 E-value=1.9e+02 Score=26.37 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=13.3
Q ss_pred HHHHHHhHHHHHHHHhhcCCC
Q 018360 45 FVAKFSIPLLSFQVISKNNPY 65 (357)
Q Consensus 45 lv~~i~lPalif~~~~~~~~~ 65 (357)
.+--+++|.-++.++.+.+++
T Consensus 308 iit~IflP~T~IaGiyGMNf~ 328 (363)
T 2iub_A 308 IIATIFMPLTFIAGIYGMNFE 328 (363)
T ss_dssp HHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHhhhcccCC
Confidence 445678899888888877665
No 9
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=8.40 E-value=2.9e+02 Score=16.21 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=7.9
Q ss_pred CchhhhHHHHHH
Q 018360 1 MISVVDAYHVVA 12 (357)
Q Consensus 1 ~~~~~~~~~~~~ 12 (357)
|||.++.+...+
T Consensus 1 MIsD~qL~~lan 12 (36)
T 1rkl_A 1 MISDEQLNSLAI 12 (36)
T ss_dssp CCSSCGGGHHHH
T ss_pred CCcHHHHHHHHH
Confidence 788887765443
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.64 E-value=4.8e+02 Score=15.99 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=8.2
Q ss_pred hHHHHHHHHHhhhhhhhccc
Q 018360 14 CVPLYVAMLLAYISVKWWKL 33 (357)
Q Consensus 14 ilpi~lii~lG~~~~r~~~~ 33 (357)
++-+.++.+..+++-||++.
T Consensus 20 v~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 33333344333343354443
Done!