Query 018360
Match_columns 357
No_of_seqs 124 out of 1118
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 14:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018360.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018360hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3d31c1 f.58.1.1 (C:13-260) Su 14.4 2.5E+02 0.018 21.3 14.0 31 196-226 168-198 (248)
2 d2iuba2 f.17.3.1 (A:286-349) M 13.8 72 0.0052 19.5 3.1 20 45-64 11-30 (64)
3 d2r6gg1 f.58.1.1 (G:7-296) Mal 9.5 3.8E+02 0.028 20.7 10.0 31 196-226 192-222 (290)
4 d2onkc1 f.58.1.1 (C:1-252) Mol 6.8 4.7E+02 0.034 19.5 12.0 31 196-226 168-198 (252)
5 d1v54g_ f.23.2.1 (G:) Mitochon 6.6 1.4E+02 0.0099 19.6 2.3 24 38-61 12-35 (84)
6 d2fbha1 a.4.5.28 (A:8-144) Tra 4.4 3.5E+02 0.025 18.2 3.8 41 297-337 24-64 (137)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 3.6 5.6E+02 0.04 16.4 4.1 20 75-94 37-56 (100)
8 d1ku9a_ a.4.5.36 (A:) DNA-bind 3.5 4.2E+02 0.031 17.9 3.6 42 295-336 20-61 (151)
9 d2a5yb2 a.77.1.3 (B:1-108) Cel 2.8 2.2E+02 0.016 18.8 0.9 23 22-46 26-48 (108)
10 d1xrxa1 a.43.1.7 (A:1-35) SeqA 2.8 4.2E+02 0.03 13.8 1.9 21 25-46 13-33 (35)
No 1
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=14.36 E-value=2.5e+02 Score=21.35 Aligned_cols=31 Identities=10% Similarity=-0.118 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHhhchhHHHHHHHHHHHHh
Q 018360 196 RTTHILLTVGRKLIINPNTHATLLGLIWASI 226 (357)
Q Consensus 196 ~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~ 226 (357)
+.++..++...-..+.+.+.+.++++...+.
T Consensus 168 s~~~~~~~I~lP~~~p~i~~~~~l~f~~~~~ 198 (248)
T d3d31c1 168 PLWKAFFFVTLPLSARYLLIGSVMTWARAIS 198 (248)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655555566666677777777765
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=13.83 E-value=72 Score=19.50 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=13.3
Q ss_pred HHHHHHhHHHHHHHHhhcCC
Q 018360 45 FVAKFSIPLLSFQVISKNNP 64 (357)
Q Consensus 45 lv~~i~lPalif~~~~~~~~ 64 (357)
.+--+++|.-.+.++...+.
T Consensus 11 ~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 11 IIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHhhhccCC
Confidence 45568899998888777654
No 3
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=9.54 E-value=3.8e+02 Score=20.74 Aligned_cols=31 Identities=16% Similarity=-0.036 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHhhchhHHHHHHHHHHHHh
Q 018360 196 RTTHILLTVGRKLIINPNTHATLLGLIWASI 226 (357)
Q Consensus 196 ~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~ 226 (357)
+.|+..+++..-..+...+.+.++.++.+..
T Consensus 192 s~~~~f~~I~lPl~~p~i~~~~il~fi~~~~ 222 (290)
T d2r6gg1 192 TPWQAFRLVLLPLSVPILAVVFILSFIAAIT 222 (290)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhhhhhhhHHHHHhhhhcc
Confidence 3455555554444565566666666666665
No 4
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.78 E-value=4.7e+02 Score=19.54 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHhhchhHHHHHHHHHHHHh
Q 018360 196 RTTHILLTVGRKLIINPNTHATLLGLIWASI 226 (357)
Q Consensus 196 ~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~ 226 (357)
+.++..++...-..+...+.+.++++..+..
T Consensus 168 s~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~ 198 (252)
T d2onkc1 168 SPLRVFFTVSLPLSVRHIVAGAIMSWARGIS 198 (252)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccceEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 3445555555455566666677777666665
No 5
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.57 E-value=1.4e+02 Score=19.61 Aligned_cols=24 Identities=4% Similarity=0.131 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhh
Q 018360 38 QCAGINKFVAKFSIPLLSFQVISK 61 (357)
Q Consensus 38 ~~~~L~~lv~~i~lPalif~~~~~ 61 (357)
..+...++.+.+.+||++...+..
T Consensus 12 ~~~lWkkis~~va~P~i~l~~~n~ 35 (84)
T d1v54g_ 12 GARTWRFLTFGLALPSVALCTLNS 35 (84)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777899999999999876643
No 6
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.40 E-value=3.5e+02 Score=18.20 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=30.6
Q ss_pred hCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHH
Q 018360 297 IGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGV 337 (357)
Q Consensus 297 ~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v 337 (357)
.|++...+.++......|.+.+.--+|+..+.+...++.++
T Consensus 24 ~glt~~q~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v 64 (137)
T d2fbha1 24 LGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLL 64 (137)
T ss_dssp GCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHH
Confidence 46777777777666667777788889999999887666543
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.58 E-value=5.6e+02 Score=16.42 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 018360 75 DFLQKLLAFLVLVALTKISS 94 (357)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~ 94 (357)
..+..++.+.+.+.+.|+.+
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 33444455556666666543
No 8
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.52 E-value=4.2e+02 Score=17.94 Aligned_cols=42 Identities=10% Similarity=-0.007 Sum_probs=32.8
Q ss_pred HHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHH
Q 018360 295 FAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTG 336 (357)
Q Consensus 295 ~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~ 336 (357)
.-+|+++....+..+....|-+.+..=+|+..|.+...++..
T Consensus 20 ~~~Gl~~~~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~ 61 (151)
T d1ku9a_ 20 KIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMS 61 (151)
T ss_dssp HHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHhCCCCcCHHHHHHHhCCCcchHHHH
Confidence 346888888888887777776688888999999987666654
No 9
>d2a5yb2 a.77.1.3 (B:1-108) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.79 E-value=2.2e+02 Score=18.80 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=16.1
Q ss_pred HHhhhhhhhccccChhhhhHHHHHH
Q 018360 22 LLAYISVKWWKLFTPDQCAGINKFV 46 (357)
Q Consensus 22 ~lG~~~~r~~~~~~~~~~~~L~~lv 46 (357)
++-|++++ ++|+++.+..++++.
T Consensus 26 Al~yl~~e--~IFTeD~selI~~M~ 48 (108)
T d2a5yb2 26 ALTYLEGK--NIFTEDHSELISKMS 48 (108)
T ss_dssp GHHHHHHT--TSSCHHHHHHHHTSS
T ss_pred ccchhccc--ccccccHHHHHHHhh
Confidence 34577764 888888887777643
No 10
>d1xrxa1 a.43.1.7 (A:1-35) SeqA {Escherichia coli [TaxId: 562]}
Probab=2.76 E-value=4.2e+02 Score=13.80 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhhhhccccChhhhhHHHHHH
Q 018360 25 YISVKWWKLFTPDQCAGINKFV 46 (357)
Q Consensus 25 ~~~~r~~~~~~~~~~~~L~~lv 46 (357)
|++.+ .+.+.+.+++.|.++.
T Consensus 13 yIas~-t~~iGEsaSdILRRll 33 (35)
T d1xrxa1 13 YIASH-TKHIGESASDILRRML 33 (35)
T ss_dssp HHHTT-CSSTTCCHHHHHHHHH
T ss_pred HHHHh-hhHhccCHHHHHHHHh
Done!