Query 018361
Match_columns 357
No_of_seqs 145 out of 217
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:22:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5157 CDC73 RNA polymerase I 100.0 1.5E-63 3.2E-68 467.4 21.4 298 2-350 3-316 (362)
2 KOG3786 RNA polymerase II asse 100.0 9.5E-61 2.1E-65 464.5 17.5 307 1-351 2-347 (395)
3 PF05179 CDC73: RNA pol II acc 100.0 5.2E-52 1.1E-56 397.7 8.7 123 231-355 113-243 (273)
4 KOG3786 RNA polymerase II asse 97.7 1.1E-05 2.4E-10 80.2 0.9 47 51-97 1-47 (395)
5 smart00481 POLIIIAc DNA polyme 37.7 21 0.00045 26.5 1.6 29 61-89 12-40 (67)
6 PF14504 CAP_assoc_N: CAP-asso 31.7 42 0.0009 29.4 2.7 29 312-340 45-74 (141)
7 PRK07313 phosphopantothenoylcy 26.4 47 0.001 30.2 2.2 35 233-267 112-151 (182)
8 PRK06029 3-octaprenyl-4-hydrox 20.8 77 0.0017 29.1 2.4 35 233-267 114-150 (185)
9 PRK05920 aromatic acid decarbo 19.3 89 0.0019 29.2 2.5 36 233-268 129-166 (204)
10 COG1965 CyaY Protein implicate 19.0 66 0.0014 27.2 1.4 19 337-355 62-81 (106)
No 1
>COG5157 CDC73 RNA polymerase II assessory factor [Transcription]
Probab=100.00 E-value=1.5e-63 Score=467.40 Aligned_cols=298 Identities=25% Similarity=0.352 Sum_probs=223.2
Q ss_pred ChhHHHHHHHhcCCC-----------CcceecCCEEEecC----CccccCCCcceeeecCCceeeHHHHHHHHHhCCCCh
Q 018361 2 DPLSALRDFTIRSEL-----------DKVTQTGDEILFGS----DYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYNLKH 66 (357)
Q Consensus 2 DpL~~LR~~~~~~~~-----------~~i~~~~~~i~Fg~----~~~~~k~~~T~f~~~~~~~ytL~si~f~~~~~d~~~ 66 (357)
..|.+||.++.+++. .+++....++.|.+ .++|+.+..|.... +..+.|++|||||+|+|.++
T Consensus 3 n~ldllk~~l~~~d~~~l~~~E~~s~~~kv~~~q~~~f~~~~S~~~~fe~ne~~eiE~--DS~~qLR~v~f~wlnrD~s~ 80 (362)
T COG5157 3 NSLDLLKKALRDPDACQLSPEEIVSGGKKVPPKQMVKFKGTESKEYTFEQNEETEIEI--DSLVQLRIVLFYWLNRDKSY 80 (362)
T ss_pred cHHHHHHHHhcCccceecchhhccccCcccCceeEEEecCCCCceeecCcccceeecc--cchhhhhhhhhhhhhccchH
Confidence 568899999998851 11222346888843 25788888888774 58899999999999999999
Q ss_pred HHHHHHHHhCCCCceecCchhhHHHhhcCCCCCccccccccccccccCCCCccccCCCCCCcchhhHHHHHhccccCCch
Q 018361 67 TDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIETVIANDHVLNDGKIVETDGGGDDLELDDISLIRACERPLKDR 146 (357)
Q Consensus 67 ~~Yv~~a~~~~i~~Vs~~DRkdLl~yL~G~~dts~~I~~~~p~~~~~~~~~~~~~~~~~d~~~~d~~~~I~~~Er~l~dR 146 (357)
++||++|++.||++|+|+||+|||+||+|.+|++.+|....|..++..+.+. .+..+.+...+++-+.+.+||.+.+|
T Consensus 81 a~Y~~~C~e~gi~ni~fl~rtdlI~wlegnteSsq~l~~~~~k~EtSs~ts~--s~~~D~~~sd~~V~~~~k~eR~l~~h 158 (362)
T COG5157 81 AVYMTLCRESGIGNIYFLDRTDLIEWLEGNTESSQYLKAPGQKKETSSTTSI--SARIDSEVSDPVVVETMKHERILVGH 158 (362)
T ss_pred HHHHHHHHHcCcccEEEeeHHHHHHHHhCCcchhhhhcCCCCCCCCcccccc--eeecccccccHHHhhhhhcceeecCC
Confidence 9999999999999999999999999999999999999753222211111111 11122222335899999999999999
Q ss_pred hhhhh-hcCCchHHHHhhhhHHHHHHHHHHhhhhcccccccccccCcccCCcccCCCCCCCCCCCCCCCccCCCChhhhh
Q 018361 147 EALLE-CKGIDFYSVLVSSTRREEERQRIESQQRKDGLVAKNRLMGVDERGIGYGGGGGGGGGGAGDEAYEANPKPKLLQ 225 (357)
Q Consensus 147 nsvLr-~k~~dFs~vl~~~~~~e~~~~~~~~~~~k~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~ 225 (357)
|++|+ .||.+|.+++.++... + ++++.+. .|..+.+| .|.
T Consensus 159 ns~l~G~kpi~f~~l~kd~ed~-----l---~qs~~~s------------------~~Hk~ah~--------Rp~----- 199 (362)
T COG5157 159 NSRLIGLKPISFLGLLKDKEDK-----L---VQSEGGS------------------LGHKGAHG--------RPT----- 199 (362)
T ss_pred CceeecccccchhhhhhhHHHH-----h---hhhcccc------------------cccccccc--------Ccc-----
Confidence 99999 4999999998766321 1 2222110 00001111 111
Q ss_pred cccCCCCCCCcEEEecCCcccccchhhHHHHhhcCcccCChhhhhccCCCCCceEEEEeeecCCCCCeeeEEEEEcCCCC
Q 018361 226 LKSGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPST 305 (357)
Q Consensus 226 ~~~~k~~~~~PIIivPs~~tslitm~Nik~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~VvD~~~~ 305 (357)
|...++||||||++++|+|||+|||+|||+|+||+|.+......+ -..+.+.+...+ -..+++|++||++.+
T Consensus 200 ----k~~~kDPIIlvp~saSS~lt~~NIK~FleEgkyV~P~n~~~~~~G--~~i~~~eK~~~~--~~g~~rfIiVd~t~~ 271 (362)
T COG5157 200 ----KYYAKDPIILVPQSASSPLTLSNIKEFLEEGKYVNPRNLPSCSDG--IRISEVEKVELD--LDGPFRFIIVDDTGG 271 (362)
T ss_pred ----ccccCCceEEeccccccceeHHHHHHHHHhcCccCccccccCCCC--ceEEeeeehhhc--ccCceEEEEEcCCCC
Confidence 223679999999999999999999999999999998764332111 113444443322 255799999999999
Q ss_pred CCCCCCCeEEEEEeeCCccccCCCCCCChHHHhccccEEEEEece
Q 018361 306 MKSEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKSKLIFELYNL 350 (357)
Q Consensus 306 ~~~~~W~rVVaVf~~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~ 350 (357)
|+||||||||||||||++|||.+|+|++|.+||++|+||||+|.|
T Consensus 272 FkpeyWdRVVciFttG~~WQf~~y~w~~p~elF~~~kgfyf~~~G 316 (362)
T COG5157 272 FKPEYWDRVVCIFTTGSKWQFGRYNWRDPGELFNTIKGFYFARRG 316 (362)
T ss_pred cChhhhceEEEEEecCCeeeecCcccCCHHHHHhhCCceEEEEcC
Confidence 999999999999999999999999999999999999999999985
No 2
>KOG3786 consensus RNA polymerase II assessory factor Cdc73p [Transcription]
Probab=100.00 E-value=9.5e-61 Score=464.51 Aligned_cols=307 Identities=34% Similarity=0.489 Sum_probs=230.2
Q ss_pred CChhHHHHHHHhcCCCCcceec--------------CCEEEecC---CccccCCCcceeeecCCceeeHHHHHHHHHhCC
Q 018361 1 MDPLSALRDFTIRSELDKVTQT--------------GDEILFGS---DYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYN 63 (357)
Q Consensus 1 ~DpL~~LR~~~~~~~~~~i~~~--------------~~~i~Fg~---~~~~~k~~~T~f~~~~~~~ytL~si~f~~~~~d 63 (357)
||.|.+|+.++..+ ..+.+. ..++.|-. ..++|+...|.-.+ +.-.+|+.++++|..++
T Consensus 2 l~sll~l~kn~~~~--h~v~l~~~~~~s~~~v~~~drk~lL~~~ng~~~~~~~~e~~~~~~--d~~~~~~i~~l~~amsd 77 (395)
T KOG3786|consen 2 LDSLLLLLKNVALK--HDVYLRASAEESIPVVTRPDRKELLFYLNGPIAKKPRTEETELEN--DSVFDLRIKSLSEAMSD 77 (395)
T ss_pred hhHHHHHHHHHhhc--CCeeeecccccCCCccccccHHHHHhhcCChhhccCCccceeeee--cccccHHHHHHHHHhcc
Confidence 68999999999999 555442 13555521 22456666665553 44799999999999999
Q ss_pred CChHHHHHHHHhCCCCceecCchhhHHHhhcCCCCCccccccccccccccCCCCccccCCCCCCcchhhHHHHHhccccC
Q 018361 64 LKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIETVIANDHVLNDGKIVETDGGGDDLELDDISLIRACERPL 143 (357)
Q Consensus 64 ~~~~~Yv~~a~~~~i~~Vs~~DRkdLl~yL~G~~dts~~I~~~~p~~~~~~~~~~~~~~~~~d~~~~d~~~~I~~~Er~l 143 (357)
.++++|.++|.+.+..+++|.+|.|++.||+|-.++ +.|.++.|+.+||++
T Consensus 78 ~~ia~ykak~~~~~~~~~k~~~~~d~i~~~~g~~~~-----------------------------d~d~~~~i~k~Er~~ 128 (395)
T KOG3786|consen 78 ESIAEYKAKCLAKKRTNIKFLVRTDLIVWLKGNTES-----------------------------DVDLIRDILKRERPW 128 (395)
T ss_pred HHHHHHhHHHHHhcccchhcccchHHHHHhhCCccc-----------------------------cHHHHhhhhccCCcc
Confidence 999999999999999999999999999999993221 115778899999999
Q ss_pred CchhhhhhhcCCchH----HHHhhhhHHHHHHHHHHhhhh----------ccc--ccccccccCcccCCcccCCCCCCCC
Q 018361 144 KDREALLECKGIDFY----SVLVSSTRREEERQRIESQQR----------KDG--LVAKNRLMGVDERGIGYGGGGGGGG 207 (357)
Q Consensus 144 ~dRnsvLr~k~~dFs----~vl~~~~~~e~~~~~~~~~~~----------k~~--~~~~~r~~~~~~~~~g~~~~~~~~~ 207 (357)
++|.++|++.+++|. +++...+.+++.++..+.++. ..+ +..|+||.+... .+|.+++.|.
T Consensus 129 rt~~~il~~~~~~~~k~~~s~l~~~~~~~e~~~~v~~~~~~~~~v~~~~~~~~p~~~~y~ryi~~rf--~~~~~~~~Gs- 205 (395)
T KOG3786|consen 129 RTRTTILQSTGREFVKNIFSKLQEVKAREEDRKTVEEHNPNFMPVDPAIRIDGPKPIDYNRYIQERF--LSFGIDTYGS- 205 (395)
T ss_pred chHHHHHhhcchhhhhhHHHHhhccceeeecCcccccccccccCCCHHHhcCCccchhhhhhhhhhh--hccccccccc-
Confidence 999999999888882 344555555555554433321 112 235788853222 2333444433
Q ss_pred CCCCCCCccCCCChhhh------hcccCCCCCCCcEEEecCCcccccchhhHHHHhhcCcccCChhhhhccCCCCCceEE
Q 018361 208 GGAGDEAYEANPKPKLL------QLKSGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVT 281 (357)
Q Consensus 208 ~~~~~~~~~~~p~~~~~------~~~~~k~~~~~PIIivPs~~tslitm~Nik~FLe~g~fv~~~~~~~~~~~~~~~~v~ 281 (357)
+|. .+ +|..+.. ...+...++++||||||+|+||||||+|||+|||||+|||...++.+++. ++++|.
T Consensus 206 ~g~-~l----~~~~e~~~~~~~~~~~~~~~prr~PIIlvPsA~sSlITm~NiK~fLeEgkyvp~~~k~~~g~~-~~~~v~ 279 (395)
T KOG3786|consen 206 HGM-KL----KPVHEGARKRRKKQPGASGGPRRDPIILVPSAASSLITMLNIKEFLEEGKYVPEAAKKNQGCR-RPEEVL 279 (395)
T ss_pred ccc-cC----CccchhhhhccccCCCCCCCCccCcEEEechhhcchhhHHhHHHHHHhcccCccchhhcCCCC-CCceee
Confidence 222 11 1111100 00011234689999999999999999999999999999995555555444 899999
Q ss_pred EEeeecCCCCCeeeEEEEEcCCCCCCCCCCCeEEEEEeeCCccccCCCCCCChHHHhccccEEEEEecee
Q 018361 282 VQKKFSRDRDQVVKAYEVRDKPSTMKSEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKSKLIFELYNLI 351 (357)
Q Consensus 282 i~r~~~~~~~~~~~~f~VvD~~~~~~~~~W~rVVaVf~~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~~ 351 (357)
|+|++++. ..+++|+|||||.+|+|+||||||||||+|++||||+|||+||+|||++||||||+|.|-
T Consensus 280 ve~kf~~~--~~~v~y~VVDn~~~ltPedWDRVVaVF~~G~~WQFk~wpw~dp~eIF~ki~gF~l~f~gd 347 (395)
T KOG3786|consen 280 VEKKFDNF--KVTVRYRVVDNPTKLTPEDWDRVVAVFVTGPKWQFKGWPWRDPVEIFNKIKGFHLHFRGD 347 (395)
T ss_pred eeeccccc--ccceEEEEecCCCcCChhhhceEEEEEeecCccccCCCCCCCHHHHHhhcceeEEEecCC
Confidence 99999753 368999999999999999999999999999999999999999999999999999999964
No 3
>PF05179 CDC73: RNA pol II accessory factor, Cdc73 family; InterPro: IPR007852 Paf1 is an RNA polymerase II-associated protein in yeast, which defines a complex that is distinct from the Srb/Mediator holoenzyme. The Paf1 complex, which also contains Cdc73, Ctr9, Hpr1, Ccr4, Rtf1 and Leo1, is required for full expression of a subset of yeast genes, particularly those responsive to signals from the Pkc1/MAP kinase cascade. The complex appears to play an essential role in RNA elongation []. ; PDB: 3V46_A.
Probab=100.00 E-value=5.2e-52 Score=397.68 Aligned_cols=123 Identities=46% Similarity=0.844 Sum_probs=84.1
Q ss_pred CCCCCcEEEecCCcccccchhhHHHHhhcCcccCChhhhhccCCCCCceEEEEeeecCCCCCeeeEEEEEcCCCCCCCCC
Q 018361 231 IGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPSTMKSED 310 (357)
Q Consensus 231 ~~~~~PIIivPs~~tslitm~Nik~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~VvD~~~~~~~~~ 310 (357)
..+++||||||+++||||||+|||+|||||+||++++++..++ .++++|+|+|++.++. ..+++|+|||||.+|+|||
T Consensus 113 ~~~~~PIIiVp~s~sSlitm~NiK~FLed~~fv~~~~~~~~~~-~~~~~v~i~r~~~~~~-~~~v~f~VvD~~~~~~ped 190 (273)
T PF05179_consen 113 RRSKDPIIIVPPSASSLITMYNIKQFLEDGKFVPPDEKRKSGS-SKPNEVTIQRKFDRIK-PGPVRFRVVDNPEKFTPED 190 (273)
T ss_dssp ---S--EEE----TT-SS-TTTHHHHHHH--------GGGS----TTSEEEEEE--TTSS-S--EEEEEESSSTT--GGG
T ss_pred cCCCCCEEEECCcccchhHHHHHHHHHHcCeeecCccccccCC-CCCCEEEEEeccCCCC-CCceeEEEecChhhCCccc
Confidence 3478999999999999999999999999999999988877654 4889999999997542 2389999999999999999
Q ss_pred CCeEEEEEeeCCccccCCCCCCChHHHhccccEEEEEec--------eeeeee
Q 018361 311 WDRVVAVFVLGKEWQFKEWPFKDHVEIFNKSKLIFELYN--------LIWGCI 355 (357)
Q Consensus 311 W~rVVaVf~~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~--------~~~~~~ 355 (357)
|+|||||||+||+||||+|||++|++||+|||||||+|+ .+|||.
T Consensus 191 W~RVVAVF~~G~~WQFk~w~~~~P~~LF~~v~gf~~~~~~~~~p~~v~~WnV~ 243 (273)
T PF05179_consen 191 WDRVVAVFVTGQAWQFKGWPWSDPVELFQKVKGFYVHYDGDKVPPNVKQWNVK 243 (273)
T ss_dssp GGGEEEEE--S-GGGGTTSSS-SHHHHHHHSEEEEEEETTS---HHHHHSSEE
T ss_pred CCeEEEEEeECchhhhCCCCCCCHHHHhhcCcEEEEEecCCCCChhHhcCCCe
Confidence 999999999999999999999999999999999999999 467764
No 4
>KOG3786 consensus RNA polymerase II assessory factor Cdc73p [Transcription]
Probab=97.69 E-value=1.1e-05 Score=80.24 Aligned_cols=47 Identities=38% Similarity=0.669 Sum_probs=45.1
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHhCCCCceecCchhhHHHhhcCCC
Q 018361 51 TLQTVVYFIKHYNLKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGVT 97 (357)
Q Consensus 51 tL~si~f~~~~~d~~~~~Yv~~a~~~~i~~Vs~~DRkdLl~yL~G~~ 97 (357)
||+||+|+.+|..++|..||++|.++.++.|+.+||++||.||+|..
T Consensus 1 tl~sll~l~kn~~~~h~v~l~~~~~~s~~~v~~~drk~lL~~~ng~~ 47 (395)
T KOG3786|consen 1 TLDSLLLLLKNVALKHDVYLRASAEESIPVVTRPDRKELLFYLNGPI 47 (395)
T ss_pred ChhHHHHHHHHHhhcCCeeeecccccCCCccccccHHHHHhhcCChh
Confidence 68999999999999999999999999999999999999999999933
No 5
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=37.67 E-value=21 Score=26.46 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=24.9
Q ss_pred hCCCChHHHHHHHHhCCCCceecCchhhH
Q 018361 61 HYNLKHTDYIQRARSNKLPAVTLPDRKPL 89 (357)
Q Consensus 61 ~~d~~~~~Yv~~a~~~~i~~Vs~~DRkdL 89 (357)
+...+..+|++.|++.|+..|.+.|...+
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh~~~ 40 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDHGNL 40 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeCCcc
Confidence 44467889999999999999999999854
No 6
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=31.73 E-value=42 Score=29.45 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=24.8
Q ss_pred CeEEEEEeeCCccccCCCCCCChH-HHhcc
Q 018361 312 DRVVAVFVLGKEWQFKEWPFKDHV-EIFNK 340 (357)
Q Consensus 312 ~rVVaVf~~G~~WQFk~w~~~~p~-~lF~~ 340 (357)
++||++++.|..|...+++.+.+. ++|++
T Consensus 45 ~kV~~lyt~~~~~~~~p~kiG~s~~~v~~~ 74 (141)
T PF14504_consen 45 GKVVALYTNGNDINVSPFKIGMSKSEVFKK 74 (141)
T ss_pred CEEEEEEECCcccccCCeecCCCHHHHHHh
Confidence 999999999999999999988664 56654
No 7
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=26.41 E-value=47 Score=30.24 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.8
Q ss_pred CCCcEEEecC----CcccccchhhHHHHhhcCcccC-Chh
Q 018361 233 EGVPIILVPS----ASQTLITIYNVKEFLEDGVYIP-TDV 267 (357)
Q Consensus 233 ~~~PIIivPs----~~tslitm~Nik~FLe~g~fv~-~~~ 267 (357)
.+.|+||+|+ ...+.++.-|+...=+.|..|= |..
T Consensus 112 ~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~ 151 (182)
T PRK07313 112 ATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKE 151 (182)
T ss_pred CCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCC
Confidence 4699999997 3357889999999999987654 544
No 8
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=20.78 E-value=77 Score=29.12 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=28.0
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHhhcCc-ccCChh
Q 018361 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGV-YIPTDV 267 (357)
Q Consensus 233 ~~~PIIivPs~~-tslitm~Nik~FLe~g~-fv~~~~ 267 (357)
.+.|+||+|..+ ...++.-|+.+.-+.|. +++|..
T Consensus 114 ~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P~~ 150 (185)
T PRK06029 114 ERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPPVP 150 (185)
T ss_pred cCCCEEEEeccccCCHHHHHHHHHHHHCcCEEECCCc
Confidence 568999999765 36799999999999887 555655
No 9
>PRK05920 aromatic acid decarboxylase; Validated
Probab=19.31 E-value=89 Score=29.21 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=28.8
Q ss_pred CCCcEEEecCC-cccccchhhHHHHhhcCc-ccCChhh
Q 018361 233 EGVPIILVPSA-SQTLITIYNVKEFLEDGV-YIPTDVK 268 (357)
Q Consensus 233 ~~~PIIivPs~-~tslitm~Nik~FLe~g~-fv~~~~~ 268 (357)
.+.|++|+|+. ..+.++.-|+....+.|. +++|+..
T Consensus 129 ~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P~~g 166 (204)
T PRK05920 129 ERRKLILVPRETPLSLIHLENMLKLAEAGAIILPAIPA 166 (204)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCCccc
Confidence 56899999984 457789999999999887 5566653
No 10
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=18.97 E-value=66 Score=27.24 Aligned_cols=19 Identities=16% Similarity=0.004 Sum_probs=16.2
Q ss_pred HhccccEEEEEec-eeeeee
Q 018361 337 IFNKSKLIFELYN-LIWGCI 355 (357)
Q Consensus 337 lF~~v~gf~~~~~-~~~~~~ 355 (357)
|=+++-||||.|. |.|.|-
T Consensus 62 lAs~~gG~HF~y~~g~W~~~ 81 (106)
T COG1965 62 LASKVGGYHFDYKNGEWIST 81 (106)
T ss_pred hhccCCCceeEeeCCEEEEC
Confidence 4578999999998 999995
Done!