Query 018361
Match_columns 357
No_of_seqs 145 out of 217
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v46_A Cell division control p 100.0 4.6E-47 1.6E-51 338.5 10.1 117 233-355 12-137 (170)
2 4h0a_A Uncharacterized protein 31.5 30 0.001 33.0 3.3 31 312-342 88-119 (323)
3 4a18_M RPL22, ribosomal protei 24.5 99 0.0034 25.5 4.8 35 246-286 28-62 (118)
4 2ejb_A Probable aromatic acid 24.1 41 0.0014 29.6 2.6 35 233-267 117-153 (189)
5 4ifa_A Extracellular protein c 24.1 44 0.0015 32.2 3.1 48 294-342 78-130 (339)
6 1qzu_A Hypothetical protein MD 23.2 38 0.0013 30.2 2.2 35 233-267 131-170 (206)
7 1sbz_A Probable aromatic acid 21.1 48 0.0016 29.4 2.4 35 233-267 113-149 (197)
8 3zqu_A Probable aromatic acid 20.6 46 0.0016 29.8 2.3 35 233-267 130-166 (209)
9 1g63_A Epidermin modifying enz 18.8 50 0.0017 28.8 2.0 35 233-267 106-145 (181)
10 1p3y_1 MRSD protein; flavoprot 18.4 45 0.0015 29.4 1.6 35 233-267 114-153 (194)
No 1
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A
Probab=100.00 E-value=4.6e-47 Score=338.55 Aligned_cols=117 Identities=30% Similarity=0.578 Sum_probs=106.7
Q ss_pred CCCcEEEecCCcccccchhhHHHHhhcCcccCChhhhhccCCCCCceEEEEeeecCCCCCeeeEEEEEcCCCCC-CCCCC
Q 018361 233 EGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPSTM-KSEDW 311 (357)
Q Consensus 233 ~~~PIIivPs~~tslitm~Nik~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~VvD~~~~~-~~~~W 311 (357)
+++|||||||++||||||+|||+|||||+||++++..+ +.+++|+|+|++.+ .+.+++|+||||+.+| +||||
T Consensus 12 ~~~PIIiVp~s~sSlitm~NiK~FLedg~fv~~~~~~~----~~~~~v~I~r~~~~--~~~~~~f~VVD~~~~~tkpe~W 85 (170)
T 3v46_A 12 RKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLPS----VPNGLVNIEKNFER--ISRPIRFIIVDNTRMFTKPEYW 85 (170)
T ss_dssp CSCCEEECCCCTTCSSCTTTHHHHHHHCCCCCGGGSCC----CTTSEEEEEECCTT--SSSCEEEEEESSSTTCCSGGGG
T ss_pred CCCCEEEECCCccchhhHHHHHHHHhcCeecChhhccc----CCCCeEEEEEecCC--CCcceEEEEEEChHHcCCccCC
Confidence 67999999999999999999999999999999998643 24679999999864 2578999999999999 69999
Q ss_pred CeEEEEEeeCCccccCCCCCCChHHHhccccEEEEEec--------eeeeee
Q 018361 312 DRVVAVFVLGKEWQFKEWPFKDHVEIFNKSKLIFELYN--------LIWGCI 355 (357)
Q Consensus 312 ~rVVaVf~~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~--------~~~~~~ 355 (357)
+|||||||+|++||||+|||++|++||++||||||+|+ .+|||.
T Consensus 86 ~RVVAVFv~G~~WQFk~w~~~~P~elF~~v~Gf~~~~~~~~~p~~v~~WnV~ 137 (170)
T 3v46_A 86 DRVVAIFTTGHTWQFNNYQWNSPQELFQRCKGYYFHFAGDSVPQHVQQWNVE 137 (170)
T ss_dssp GGEEEEECCSCGGGGTTSSSCSHHHHHHHSEEEEEEETTSCCCHHHHHSSEE
T ss_pred ceEEEEEeECchhhcCCCCCCChHHHhccceEEEEEecCCCCChhHhhCCCE
Confidence 99999999999999999999999999999999999999 467764
No 2
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=31.48 E-value=30 Score=33.01 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=26.6
Q ss_pred CeEEEEEeeCCccccCCCCCCCh-HHHhcccc
Q 018361 312 DRVVAVFVLGKEWQFKEWPFKDH-VEIFNKSK 342 (357)
Q Consensus 312 ~rVVaVf~~G~~WQFk~w~~~~p-~~lF~~v~ 342 (357)
++||+||++|..|..+++....+ .++|++..
T Consensus 88 ~kVv~iy~~g~~~~~~p~~iG~s~~~v~~~~~ 119 (323)
T 4h0a_A 88 EEIVSVYATGEKVNVSPLKIGQHSAEIFNHTS 119 (323)
T ss_dssp TEEEEEEEESSSCCCTTCCTTSBGGGTTTSCC
T ss_pred CEEEEEEECCCccccCCcccCCCHHHHHHhcC
Confidence 89999999999999999998755 57887763
No 3
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M
Probab=24.46 E-value=99 Score=25.49 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=24.1
Q ss_pred cccchhhHHHHhhcCcccCChhhhhccCCCCCceEEEEeee
Q 018361 246 TLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKF 286 (357)
Q Consensus 246 slitm~Nik~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~ 286 (357)
.++.+.|-.+||+|-.=|.-- .++-.+.|+|+|..
T Consensus 28 ~I~d~a~fekfL~erIKV~gk------~gnLg~~V~i~~~~ 62 (118)
T 4a18_M 28 KVILIGEFAEFLKSKIKVGGK------LGNLGENITISNDD 62 (118)
T ss_dssp TCCCHHHHHHHHHHHCCBTTB------SSCCTTTEEEEECS
T ss_pred ceecHHHHHHHHHHHhhccCc------ccccCCeEEEEEcC
Confidence 689999999999986555321 12244578888763
No 4
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=24.11 E-value=41 Score=29.56 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHhhcCccc-CChh
Q 018361 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGVYI-PTDV 267 (357)
Q Consensus 233 ~~~PIIivPs~~-tslitm~Nik~FLe~g~fv-~~~~ 267 (357)
.+.|+||+|+.+ ...+++-|+...-+.|.++ ||..
T Consensus 117 ~~~plvl~Pa~m~~~~~~~~N~~~L~~~G~~ivpp~~ 153 (189)
T 2ejb_A 117 ERVPLVLLVREAPYNEIHLENMLKITRMGGVVVPASP 153 (189)
T ss_dssp HTCCEEEEECCSSCCHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCeEEeCCCh
Confidence 358999999954 4789999999999988754 4544
No 5
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=24.06 E-value=44 Score=32.16 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=33.5
Q ss_pred eeEEEEEc-CCCCC---CCCCCCeEEEEEeeCCccccCCCCCCCh-HHHhcccc
Q 018361 294 VKAYEVRD-KPSTM---KSEDWDRVVAVFVLGKEWQFKEWPFKDH-VEIFNKSK 342 (357)
Q Consensus 294 ~~~f~VvD-~~~~~---~~~~W~rVVaVf~~G~~WQFk~w~~~~p-~~lF~~v~ 342 (357)
.+.+.|-+ +...+ .-++ ++||+|+++|+.+..++++...+ .+||++..
T Consensus 78 gy~w~vY~~~~~~y~~vgv~~-~kVv~~y~~g~~~~~~p~kiG~s~~~v~~~~~ 130 (339)
T 4ifa_A 78 GYEWWVYNQDLAQYVQFGVAE-RKVVTAYVAGEQVKVPPYYINEKYEDVYKKNP 130 (339)
T ss_dssp SCEEEEECSSGGGCEEEEEET-TEEEEEEECCTTSCBTTBCTTCBHHHHHHHSC
T ss_pred CceEEEEcCCCCcEEEEEEEC-CEEEEEEECCCccccCCcccCCCHHHHHHhcC
Confidence 35556654 33333 2223 99999999999999999998866 56887653
No 6
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=23.16 E-value=38 Score=30.23 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=26.2
Q ss_pred CCCcEEEecCCc----ccccchhhHHHHhhcCccc-CChh
Q 018361 233 EGVPIILVPSAS----QTLITIYNVKEFLEDGVYI-PTDV 267 (357)
Q Consensus 233 ~~~PIIivPs~~----tslitm~Nik~FLe~g~fv-~~~~ 267 (357)
.+.||||+|+.- ...++.-|++.+-+.|.++ +|..
T Consensus 131 ~~~pvvlaPaMn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 170 (206)
T 1qzu_A 131 RSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVA 170 (206)
T ss_dssp TTSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC---
T ss_pred CCCCEEEEecCCccccCCHHHHHHHHHHHHCCCEEECCcc
Confidence 568999999765 3678899999999988754 4554
No 7
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=21.08 E-value=48 Score=29.42 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=27.5
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHhhcCccc-CChh
Q 018361 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGVYI-PTDV 267 (357)
Q Consensus 233 ~~~PIIivPs~~-tslitm~Nik~FLe~g~fv-~~~~ 267 (357)
.+.|+||+|+.+ ...+++-|+...-+.|.++ ||..
T Consensus 113 ~~~plvl~Pa~m~~~~~~~~N~~~L~~~G~~ivpp~~ 149 (197)
T 1sbz_A 113 EGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMP 149 (197)
T ss_dssp HTCEEEEEECCSSBCHHHHHHHHHHHTTTCEECCCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCC
Confidence 458999999965 3679999999999988654 4544
No 8
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=20.59 E-value=46 Score=29.78 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=27.8
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHhhcCcc-cCChh
Q 018361 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGVY-IPTDV 267 (357)
Q Consensus 233 ~~~PIIivPs~~-tslitm~Nik~FLe~g~f-v~~~~ 267 (357)
.+.|+||+|+.+ .+.+++-|+...-+.|.. +||..
T Consensus 130 ~~~plvl~Paem~~~~~~~~Nm~~L~~~G~~iipp~~ 166 (209)
T 3zqu_A 130 ERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAP 166 (209)
T ss_dssp HTCCEEEEECCSSCCHHHHHHHHHHHHHTCEECCSCC
T ss_pred cCCcEEEEEcccccCHHHHHHHHHHHHCCCEEeCCCc
Confidence 358999999965 478999999999998874 45544
No 9
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=18.79 E-value=50 Score=28.79 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=27.6
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCccc-CChh
Q 018361 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDV 267 (357)
Q Consensus 233 ~~~PIIivPs~~t----slitm~Nik~FLe~g~fv-~~~~ 267 (357)
.+.|+||+|+.-+ ..++.-|+...-+.|.++ +|..
T Consensus 106 ~~~pvvlaPamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 145 (181)
T 1g63_A 106 GYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDM 145 (181)
T ss_dssp TGGGEEEEECCCHHHHTCHHHHHHHHHHHTTTCEECCCEE
T ss_pred cCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCCEEECCCC
Confidence 4589999997753 578899999999988754 4544
No 10
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=18.38 E-value=45 Score=29.44 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCCcEEEecCCc----ccccchhhHHHHhhcCccc-CChh
Q 018361 233 EGVPIILVPSAS----QTLITIYNVKEFLEDGVYI-PTDV 267 (357)
Q Consensus 233 ~~~PIIivPs~~----tslitm~Nik~FLe~g~fv-~~~~ 267 (357)
.+.|+||+|+.- .+.++.-|+..+-+.|.++ ||..
T Consensus 114 ~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 153 (194)
T 1p3y_1 114 HPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVE 153 (194)
T ss_dssp SSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBC
T ss_pred cCCCEEEEECCChhhcCCHHHHHHHHHHHHCCCEEECCCC
Confidence 458999999844 3678999999999988754 4554
Done!