Query 018361
Match_columns 357
No_of_seqs 145 out of 217
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 14:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018361.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018361hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nd9a_ a.6.1.6 (A:) N-termina 32.6 20 0.0015 23.4 3.4 32 63-94 13-49 (49)
2 d1p3y1_ c.34.1.1 (1:) MrsD {Ba 29.7 9.2 0.00067 31.6 1.6 35 233-267 112-151 (183)
3 d1mvla_ c.34.1.1 (A:) 4'-phosp 21.3 20 0.0014 29.5 2.1 36 233-268 113-153 (182)
4 d1a62a1 a.140.3.1 (A:1-47) Rho 20.4 33 0.0024 22.1 2.6 30 62-91 7-36 (47)
5 d1k91a_ b.104.1.1 (A:) Calreti 18.0 27 0.0019 21.6 1.6 14 299-312 5-18 (37)
6 d1g5qa_ c.34.1.1 (A:) Epidermi 17.6 25 0.0018 28.5 1.9 36 233-268 106-146 (174)
7 d1qzua_ c.34.1.1 (A:) 4'-phosp 17.2 27 0.002 28.6 2.0 36 233-268 116-156 (181)
8 d1m65a_ c.6.3.1 (A:) Hypotheti 11.6 43 0.0031 26.1 1.8 26 64-89 17-42 (244)
9 d1jdla_ a.3.1.1 (A:) Cytochrom 11.0 33 0.0024 25.6 0.7 14 82-95 102-115 (118)
10 d1cota_ a.3.1.1 (A:) Cytochrom 10.8 1.8E+02 0.013 20.8 5.2 47 47-97 67-118 (121)
No 1
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=32.61 E-value=20 Score=23.45 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCChHHHHHHHHhCCCC-----ceecCchhhHHHhhc
Q 018361 63 NLKHTDYIQRARSNKLP-----AVTLPDRKPLYEYLT 94 (357)
Q Consensus 63 d~~~~~Yv~~a~~~~i~-----~Vs~~DRkdLl~yL~ 94 (357)
..+.-.-+.+..++||+ .|+-.|++.||+||+
T Consensus 13 ~~~vd~Ll~Ql~~AGl~ks~~D~vt~~eK~~LL~~Ln 49 (49)
T d1nd9a_ 13 QTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLN 49 (49)
T ss_dssp SSSHHHHHHHHHHHTSCCSSSSCEETTGGGHHHHHHC
T ss_pred CcCHHHHHHHHHHcCCCCCCCCccCHHHHHHHHHhhC
Confidence 45566677888888886 788999999999996
No 2
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}
Probab=29.67 E-value=9.2 Score=31.61 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCc-ccCChh
Q 018361 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDV 267 (357)
Q Consensus 233 ~~~PIIivPs~~t----slitm~Nik~FLe~g~-fv~~~~ 267 (357)
.+.||||+|+.-+ ..++.-|++.+-++|. +++|.+
T Consensus 112 ~~~pvviaPaMn~~M~~np~~~~ni~~L~~~G~~vi~P~~ 151 (183)
T d1p3y1_ 112 HPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVE 151 (183)
T ss_dssp SSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBC
T ss_pred ccCceEEEEccchHHHhhhhhHHHHHHHHHCCCEEeCCCC
Confidence 4579999998764 4588999999999995 666764
No 3
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.32 E-value=20 Score=29.45 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=28.1
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCc-ccCChhh
Q 018361 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDVK 268 (357)
Q Consensus 233 ~~~PIIivPs~~t----slitm~Nik~FLe~g~-fv~~~~~ 268 (357)
.+.||||+|+.-+ ..++.-|++.+-++|. +++|+..
T Consensus 113 ~~kPv~iaPaMn~~Mw~~p~t~~Nl~~L~~~G~~vi~P~~G 153 (182)
T d1mvla_ 113 YTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKK 153 (182)
T ss_dssp TTSCEEEEECCCHHHHHSHHHHHHHHHHHHHTCEECCCBC-
T ss_pred CCCCEEEEecccHHHHhhHHHHHHHHHHhccCCEEECCCcc
Confidence 3479999999875 4678899999999987 5667654
No 4
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.40 E-value=33 Score=22.10 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=27.0
Q ss_pred CCCChHHHHHHHHhCCCCceecCchhhHHH
Q 018361 62 YNLKHTDYIQRARSNKLPAVTLPDRKPLYE 91 (357)
Q Consensus 62 ~d~~~~~Yv~~a~~~~i~~Vs~~DRkdLl~ 91 (357)
+..+.++-+.-|.+.||.+++..-|.||+-
T Consensus 7 k~k~~~EL~~iA~~lgIen~~~lrKQeLif 36 (47)
T d1a62a1 7 KNTPVSELITLGENMGLENLARMRKQDIIF 36 (47)
T ss_dssp HTSCHHHHHHHHHTTTCCCCTTSCHHHHHH
T ss_pred hcCCHHHHHHHHHHcCCCCcccccHHHHHH
Confidence 457889999999999999999999999974
No 5
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.99 E-value=27 Score=21.58 Aligned_cols=14 Identities=43% Similarity=0.798 Sum_probs=11.8
Q ss_pred EEcCCCCCCCCCCC
Q 018361 299 VRDKPSTMKSEDWD 312 (357)
Q Consensus 299 VvD~~~~~~~~~W~ 312 (357)
.|.+++..+|+|||
T Consensus 5 ~IpDp~A~kP~dWd 18 (37)
T d1k91a_ 5 HIPDPDAKKPEDWD 18 (37)
T ss_dssp EEECSSCCSCTTCC
T ss_pred ccCCCCCCCCCccc
Confidence 36788889999998
No 6
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]}
Probab=17.59 E-value=25 Score=28.50 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=28.5
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCc-ccCChhh
Q 018361 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDVK 268 (357)
Q Consensus 233 ~~~PIIivPs~~t----slitm~Nik~FLe~g~-fv~~~~~ 268 (357)
.+.||||+|+.-+ ..++.-|++.+-++|. +++|+..
T Consensus 106 ~~~piiiaPaMn~~Mw~~p~~~~nl~~L~~~G~~vi~P~~g 146 (174)
T d1g5qa_ 106 GYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMN 146 (174)
T ss_dssp TGGGEEEEECSCHHHHTCHHHHHHHHHHHTTTCEECCCEEE
T ss_pred ccccEEEEecccHHHHhhhhHHHHHHHHHHCCCEEECCCCC
Confidence 3479999999764 5789999999999987 5567653
No 7
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.22 E-value=27 Score=28.57 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=26.2
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCccc-CChhh
Q 018361 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDVK 268 (357)
Q Consensus 233 ~~~PIIivPs~~t----slitm~Nik~FLe~g~fv-~~~~~ 268 (357)
.+.||||+|+.-+ ..+|--|++.+-++|..+ +|..+
T Consensus 116 ~~kPv~iaPaMn~~Mw~np~tq~nl~~Lk~~G~~vi~P~~g 156 (181)
T d1qzua_ 116 RSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAK 156 (181)
T ss_dssp TTSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC----
T ss_pred CCCCEEEEECccHHHHhhHHHHHHHHHHHHCCcEEeCCCCc
Confidence 4479999999975 478999999998988754 46553
No 8
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}
Probab=11.63 E-value=43 Score=26.08 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.4
Q ss_pred CChHHHHHHHHhCCCCceecCchhhH
Q 018361 64 LKHTDYIQRARSNKLPAVTLPDRKPL 89 (357)
Q Consensus 64 ~~~~~Yv~~a~~~~i~~Vs~~DRkdL 89 (357)
.+..++++.|++.|+..|.++|--++
T Consensus 17 ~~~~e~v~~A~~~Gl~~iaiTDH~~~ 42 (244)
T d1m65a_ 17 STLSDYIAQAKQKGIKLFAITDHGPD 42 (244)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEECTT
T ss_pred CCHHHHHHHHHHCCCCEEEEcCCCCc
Confidence 35678999999999999999998654
No 9
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=10.99 E-value=33 Score=25.65 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=11.3
Q ss_pred ecCchhhHHHhhcC
Q 018361 82 TLPDRKPLYEYLTG 95 (357)
Q Consensus 82 s~~DRkdLl~yL~G 95 (357)
+-.||.|||+||.-
T Consensus 102 ~~~d~~dliaYL~s 115 (118)
T d1jdla_ 102 DEQERKDVVAYLKQ 115 (118)
T ss_dssp CHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHH
Confidence 34689999999974
No 10
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}
Probab=10.76 E-value=1.8e+02 Score=20.84 Aligned_cols=47 Identities=6% Similarity=0.137 Sum_probs=29.1
Q ss_pred CceeeHHHHHHHHHhCCCChHHHHHHHHhCCC-----CceecCchhhHHHhhcCCC
Q 018361 47 GNLYTLQTVVYFIKHYNLKHTDYIQRARSNKL-----PAVTLPDRKPLYEYLTGVT 97 (357)
Q Consensus 47 ~~~ytL~si~f~~~~~d~~~~~Yv~~a~~~~i-----~~Vs~~DRkdLl~yL~G~~ 97 (357)
|..++-+.|.-++.+ -..||+.-..... +..+--||.|||+||.--+
T Consensus 67 g~~w~~~~L~~~l~~----P~~~i~~~~~~~~~~t~M~~~~~~d~~dliAYLks~~ 118 (121)
T d1cota_ 67 DLTWTEADLIEYVTD----PKPWLVKMTDDKGAKTKMTFKMGKNQADVVAFLAQNS 118 (121)
T ss_dssp TCBCCHHHHHHHHHC----HHHHHHHHHTCTTCCCSCCCCCCSCHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHC----cHHHhccccCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 345666666555544 2456665554433 2456679999999997544
Done!