Query 018362
Match_columns 357
No_of_seqs 168 out of 1448
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 14:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zy9_A Mg2+ transporter MGTE; 10.4 2.7E+02 0.0094 26.8 4.9 19 56-74 419-437 (473)
2 1vry_A Glycine receptor alpha- 8.8 2.3E+02 0.0079 20.3 2.7 26 129-154 38-63 (76)
3 2lat_A Dolichyl-diphosphooligo 8.6 3.1E+02 0.011 16.8 2.8 18 337-354 8-25 (37)
4 2l9u_A Receptor tyrosine-prote 8.5 2.3E+02 0.0078 17.2 2.1 12 301-312 19-30 (40)
5 4g1u_A Hemin transport system 7.9 9.1E+02 0.031 22.3 7.3 9 215-223 45-53 (357)
6 1rkl_A Dolichyl-diphosphooligo 6.0 4.2E+02 0.014 16.1 2.5 17 338-354 9-25 (36)
7 2a9h_A Voltage-gated potassium 6.0 7.7E+02 0.026 19.6 5.1 14 335-348 113-126 (155)
8 3j1r_A Archaeal adhesion filam 5.9 4.5E+02 0.016 14.7 3.1 16 298-313 9-24 (26)
9 2l5q_A Uncharacterized protein 5.2 2.8E+02 0.0096 22.4 1.7 31 314-345 94-124 (142)
10 2zt9_E Cytochrome B6-F complex 4.6 6.1E+02 0.021 14.9 2.5 13 298-310 11-23 (31)
No 1
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=10.35 E-value=2.7e+02 Score=26.77 Aligned_cols=19 Identities=32% Similarity=0.761 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhhhhhhhcc
Q 018362 56 VSILIASAAGVSLPFLVKK 74 (357)
Q Consensus 56 ~~il~~sllg~~lP~~~~~ 74 (357)
+.+++++++|+++|+.++|
T Consensus 419 ~~~~~a~~~g~~~p~~~~~ 437 (473)
T 2zy9_A 419 LIVFFANLVGAMLPFLLRR 437 (473)
T ss_dssp HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544
No 2
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=8.84 E-value=2.3e+02 Score=20.29 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc
Q 018362 129 GFIAMMSSIGTLMMEAYATGYHKRTE 154 (357)
Q Consensus 129 ~~~~~~G~~l~~lle~~~~~~~~~~~ 154 (357)
.+..+..|.+.-++|..+-.|..+++
T Consensus 38 w~~~C~~FVF~aLlEya~V~y~~r~~ 63 (76)
T 1vry_A 38 WLAVCLLFVFSALLEYAAVNFVSRKK 63 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556777777899998877765543
No 3
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=8.61 E-value=3.1e+02 Score=16.83 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.2
Q ss_pred HHHHHHHhHHHHHHHhhh
Q 018362 337 ANFTVLLGASCMCFLAKL 354 (357)
Q Consensus 337 ~~~~~l~G~~~Ma~l~~w 354 (357)
..++..+|...|.++-.|
T Consensus 8 ~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357899999999888654
No 4
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.53 E-value=2.3e+02 Score=17.16 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHH
Q 018362 301 LNSASAGILTYM 312 (357)
Q Consensus 301 l~alaaGtflYV 312 (357)
..-+-+|+|+|-
T Consensus 19 if~~lg~tflyw 30 (40)
T 2l9u_A 19 IFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhCceeEEE
Confidence 344567888884
No 5
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=7.92 E-value=9.1e+02 Score=22.29 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=3.5
Q ss_pred HHhHHhhhe
Q 018362 215 VIIGISLGA 223 (357)
Q Consensus 215 ~~eGlalGv 223 (357)
++-.+.+|.
T Consensus 45 ~~~sl~~G~ 53 (357)
T 4g1u_A 45 ALGSANMGA 53 (357)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHhCC
Confidence 344555554
No 6
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=6.04 E-value=4.2e+02 Score=16.14 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHHhhh
Q 018362 338 NFTVLLGASCMCFLAKL 354 (357)
Q Consensus 338 ~~~~l~G~~~Ma~l~~w 354 (357)
.++..+|...|.++-.|
T Consensus 9 ~lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46889999999888654
No 7
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=6.03 E-value=7.7e+02 Score=19.62 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=6.0
Q ss_pred HHHHHHHHHhHHHH
Q 018362 335 IGANFTVLLGASCM 348 (357)
Q Consensus 335 ~~~~~~~l~G~~~M 348 (357)
+...+..+.|.+++
T Consensus 113 ~~~~~~~l~Gv~~~ 126 (155)
T 2a9h_A 113 CVAVVVMVAGITSY 126 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=5.94 E-value=4.5e+02 Score=14.67 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018362 298 QGLLNSASAGILTYMA 313 (357)
Q Consensus 298 ~gil~alaaGtflYVa 313 (357)
.-|+.+++++.++|.=
T Consensus 9 lLIviav~aaVllylW 24 (26)
T 3j1r_A 9 LLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466788889888863
No 9
>2l5q_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=5.21 E-value=2.8e+02 Score=22.36 Aligned_cols=31 Identities=6% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHhHhhhcCccccchHHHHHHHHHHHHHhH
Q 018362 314 LVDLLAADFMNPKMLSNIRLQIGANFTVLLGA 345 (357)
Q Consensus 314 ~~Ellp~e~~~~~~~~~~~~~~~~~~~~l~G~ 345 (357)
|.|++| ++...++..+..+++.+|--++...
T Consensus 94 f~eVLP-~yD~dRVy~SDIKKliqWYNiL~~~ 124 (142)
T 2l5q_A 94 FAEVLP-NYDRDRVHNGDIKKLISWYNILVNN 124 (142)
T ss_dssp HTTTCT-TCCSSSTTSSHHHHHHHHHHHHHHH
T ss_pred HHHhCC-CCcccccchHHHHHHHHHHHHHHHc
Confidence 458888 6766666655556777777666543
No 10
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=4.61 E-value=6.1e+02 Score=14.86 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 018362 298 QGLLNSASAGILT 310 (357)
Q Consensus 298 ~gil~alaaGtfl 310 (357)
.++..++++|.++
T Consensus 11 l~~~~~iA~GL~f 23 (31)
T 2zt9_E 11 LALFTGIAAGLLF 23 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4667777888664
Done!