Query 018362
Match_columns 357
No_of_seqs 168 out of 1448
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 14:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018362.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018362hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 14.8 1.2E+02 0.0089 23.3 5.5 25 51-75 116-140 (173)
2 d1kqfb2 f.23.22.1 (B:246-290) 7.9 1.6E+02 0.012 17.3 3.0 17 298-314 18-34 (45)
3 d2bs2c1 f.21.2.1 (C:1-254) Fum 5.6 4.6E+02 0.033 20.8 5.9 63 82-144 23-94 (254)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 4.9 1.4E+02 0.01 16.6 1.2 14 96-109 8-21 (36)
5 d1v54l_ f.23.6.1 (L:) Mitochon 4.1 3.3E+02 0.024 15.9 2.6 24 49-74 17-40 (46)
6 d1jb0j_ f.23.18.1 (J:) Subunit 3.9 3.8E+02 0.028 15.2 2.8 17 294-310 11-27 (41)
7 d1rkla_ f.23.30.1 (A:) Oligosa 3.8 3.4E+02 0.025 14.7 2.3 16 339-354 10-25 (36)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 3.2 4.2E+02 0.031 14.3 2.5 16 338-353 6-21 (34)
9 d2e74f1 f.23.25.1 (F:1-32) Pet 2.5 4.9E+02 0.036 13.5 3.0 19 335-353 10-28 (32)
10 d3cx5d2 f.23.11.1 (D:261-307) 2.1 4.3E+02 0.032 15.5 1.6 17 43-59 4-20 (47)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=14.82 E-value=1.2e+02 Score=23.25 Aligned_cols=25 Identities=24% Similarity=0.624 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccc
Q 018362 51 KLVAIVSILIASAAGVSLPFLVKKV 75 (357)
Q Consensus 51 ki~~~~~il~~sllg~~lP~~~~~~ 75 (357)
-+...+.+.+++++|..+|+..+|.
T Consensus 116 ~~sl~~~~~ia~~~G~~lPlll~kl 140 (173)
T d2yvxa3 116 GVSLVLIVFFANLVGAMLPFLLRRL 140 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666666667666654
No 2
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=7.95 E-value=1.6e+02 Score=17.35 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018362 298 QGLLNSASAGILTYMAL 314 (357)
Q Consensus 298 ~gil~alaaGtflYVa~ 314 (357)
.++..++++|.|-||+.
T Consensus 18 ~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 18 AGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhee
Confidence 35566778899999876
No 3
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=5.57 E-value=4.6e+02 Score=20.82 Aligned_cols=63 Identities=6% Similarity=-0.164 Sum_probs=34.4
Q ss_pred hhHHHHHHHhhhhHHHHHhHHhcc--------HhhhHhccCCCCC-CCCCCCCcHHHHHHHHHHHHHHHHHH
Q 018362 82 KDVFFLIKAFAAGVILATGFIHIL--------PDAFESLTSPCLC-ENPWHKFPFAGFIAMMSSIGTLMMEA 144 (357)
Q Consensus 82 ~~~l~~l~~fa~GVlLa~aflhLL--------Pea~e~~~~~~~~-~~~~~~~p~~~~~~~~G~~l~~lle~ 144 (357)
+-.+..+.+++|=++..-.+.||+ ||+++...+.... ..+....|+.-.+..++++..+++--
T Consensus 23 ~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~~~~~~p~l~~i~~~~l~~~ll~H~ 94 (254)
T d2bs2c1 23 PAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHA 94 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHHHHHHH
Confidence 445777777777776667778877 6666655432111 01112346655555555555555543
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.88 E-value=1.4e+02 Score=16.64 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=7.0
Q ss_pred HHHHhHHhccHhhh
Q 018362 96 ILATGFIHILPDAF 109 (357)
Q Consensus 96 lLa~aflhLLPea~ 109 (357)
+++++++-++|.++
T Consensus 8 ~iAt~LFilvPt~F 21 (36)
T d2axtm1 8 LIATALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 5
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.09 E-value=3.3e+02 Score=15.91 Aligned_cols=24 Identities=25% Similarity=0.710 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhcc
Q 018362 49 KYKLVAIVSILIASAAGVSLPFLVKK 74 (357)
Q Consensus 49 ~~ki~~~~~il~~sllg~~lP~~~~~ 74 (357)
.+|+.++++++++|-+ ..|.++.|
T Consensus 17 k~rLla~m~~~fGsgf--a~PF~ivR 40 (46)
T d1v54l_ 17 KWRLLAMMTLFFGSGF--AAPFFIVR 40 (46)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--cchHHHHH
Confidence 4677788888887765 46887765
No 6
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=3.94 E-value=3.8e+02 Score=15.20 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018362 294 ALIVQGLLNSASAGILT 310 (357)
Q Consensus 294 ~~~~~gil~alaaGtfl 310 (357)
+.++..+-.++.||.++
T Consensus 11 APVla~~w~~~tAG~lI 27 (41)
T d1jb0j_ 11 APVLAAIWMTITAGILI 27 (41)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45566777888888875
No 7
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.78 E-value=3.4e+02 Score=14.65 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=13.1
Q ss_pred HHHHHhHHHHHHHhhh
Q 018362 339 FTVLLGASCMCFLAKL 354 (357)
Q Consensus 339 ~~~l~G~~~Ma~l~~w 354 (357)
+.+.+|+..|.++-+|
T Consensus 10 ~~i~fgi~mmtliviy 25 (36)
T d1rkla_ 10 LAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 5688899999888776
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.21 E-value=4.2e+02 Score=14.28 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=12.4
Q ss_pred HHHHHHhHHHHHHHhh
Q 018362 338 NFTVLLGASCMCFLAK 353 (357)
Q Consensus 338 ~~~~l~G~~~Ma~l~~ 353 (357)
+.+.+.|.+++.++++
T Consensus 6 lv~tv~G~~vi~~vG~ 21 (34)
T d2axtj1 6 IVATVAGMGVIVIVGL 21 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheee
Confidence 3677888888888875
No 9
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.47 E-value=4.9e+02 Score=13.51 Aligned_cols=19 Identities=16% Similarity=0.058 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHHHHhh
Q 018362 335 IGANFTVLLGASCMCFLAK 353 (357)
Q Consensus 335 ~~~~~~~l~G~~~Ma~l~~ 353 (357)
+..|..+++|+++-+++-+
T Consensus 10 ~lsfglifvgwglgalllk 28 (32)
T d2e74f1 10 LLSFGLIFVGWGLGVLLLK 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHhh
Confidence 4567778888888777654
No 10
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.11 E-value=4.3e+02 Score=15.46 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=9.0
Q ss_pred cccccchhHHHHHHHHH
Q 018362 43 KTTEALKYKLVAIVSIL 59 (357)
Q Consensus 43 ~~~~~~~~ki~~~~~il 59 (357)
|+-..+++|.+.++.++
T Consensus 4 DeRK~mg~K~~~i~s~l 20 (47)
T d3cx5d2 4 DERKRLGLKTVIILSSL 20 (47)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44456667765544433
Done!