Query 018363
Match_columns 357
No_of_seqs 118 out of 139
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 14:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018363.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018363hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0k_ f.30.1.1 (K:) Photosys 12.4 24 0.0018 24.7 0.3 18 236-253 1-18 (58)
2 d1pxva_ d.3.1.1 (A:) Staphopai 11.6 50 0.0037 27.6 2.2 20 133-152 52-72 (183)
3 d1bama_ c.52.1.3 (A:) Restrict 10.3 33 0.0024 29.2 0.5 11 347-357 145-155 (213)
4 d1jb0j_ f.23.18.1 (J:) Subunit 9.8 1.3E+02 0.0091 19.5 3.2 19 300-318 15-33 (41)
5 d1oqca_ a.24.15.1 (A:) Augment 7.5 59 0.0043 24.2 0.9 14 106-119 12-25 (112)
6 d1jr8a_ a.24.15.1 (A:) Thiol o 6.4 73 0.0053 23.5 0.9 14 106-119 10-23 (105)
7 d1wexa_ d.58.7.1 (A:) Heteroge 6.3 1.5E+02 0.011 20.8 2.8 43 124-166 54-99 (104)
8 d1uwda_ d.52.8.2 (A:) Hypothet 5.7 1.2E+02 0.0085 22.4 1.7 23 130-152 6-29 (102)
9 d1t77a2 b.55.1.6 (A:2076-2185) 5.4 1E+02 0.0076 22.9 1.3 22 124-146 88-109 (110)
10 d1b7fa1 d.58.7.1 (A:123-204) S 5.4 98 0.0071 20.7 1.0 18 125-142 48-65 (82)
No 1
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=12.38 E-value=24 Score=24.67 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=14.3
Q ss_pred HHhhHHHHHHHHHHhhhc
Q 018363 236 LICNWFGIWAGMHTVRYF 253 (357)
Q Consensus 236 L~CN~lGI~lGm~~~~~l 253 (357)
++||.+.|.+|-.+.|+=
T Consensus 1 I~cN~lai~ig~~tI~~p 18 (58)
T d1jb0k_ 1 ILCNLFAIALGRYAIQSR 18 (58)
T ss_dssp CHHHHHHHHHHHC-CCCS
T ss_pred CeehhHHHHHHHHHHcCC
Confidence 379999999999888753
No 2
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]}
Probab=11.63 E-value=50 Score=27.57 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCC-CCCCCcc
Q 018363 133 DARQFMKFLHPDL-GVELPER 152 (357)
Q Consensus 133 daR~~l~~ldP~L-g~~l~ek 152 (357)
.|+++|++|.|+| |..++.+
T Consensus 52 ~A~~iMR~lyPn~s~~~l~~~ 72 (183)
T d1pxva_ 52 NAHDIMRTLYPEVSEQDLPNC 72 (183)
T ss_dssp CHHHHHHHHSTTSCTTTGGGC
T ss_pred CHHHHHHHhCCCcccchhhhc
Confidence 3999999999998 4456643
No 3
>d1bama_ c.52.1.3 (A:) Restriction endonuclease BamHI {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=10.30 E-value=33 Score=29.16 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=9.9
Q ss_pred HHHHHhhccCC
Q 018363 347 IREYNSYLQDR 357 (357)
Q Consensus 347 ~rEyY~yi~D~ 357 (357)
+|+.|.|+|||
T Consensus 145 ~r~my~YLTDR 155 (213)
T d1bama_ 145 IKQLAYYLTDR 155 (213)
T ss_dssp CHHHHTTBCSS
T ss_pred hHHHHHHHHHh
Confidence 58999999997
No 4
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=9.82 E-value=1.3e+02 Score=19.46 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 018363 300 IQVLTLCIIFLTVELNTFF 318 (357)
Q Consensus 300 ~~v~~l~~~~ll~ELN~Ff 318 (357)
..+.+-...-++.|.|-||
T Consensus 15 a~~w~~~tAG~lIEiNRFf 33 (41)
T d1jb0j_ 15 AAIWMTITAGILIEFNRFY 33 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3444556667889999998
No 5
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.51 E-value=59 Score=24.18 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHH
Q 018363 106 PAIWRLVHGMAVVY 119 (357)
Q Consensus 106 Pa~WR~V~gl~vlY 119 (357)
|+.|+++|.++.-|
T Consensus 12 p~~W~~lH~ia~~y 25 (112)
T d1oqca_ 12 RNTWAFLHTLAAYY 25 (112)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC
Confidence 79999999988765
No 6
>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.36 E-value=73 Score=23.47 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHH
Q 018363 106 PAIWRLVHGMAVVY 119 (357)
Q Consensus 106 Pa~WR~V~gl~vlY 119 (357)
|+.|+++|.++.-|
T Consensus 10 p~~W~~lHtia~~y 23 (105)
T d1jr8a_ 10 RASWKYFHTLLARF 23 (105)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999888654
No 7
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.29 E-value=1.5e+02 Score=20.77 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=30.0
Q ss_pred HHHhccChHHHHHHHHHHc--C-CCCCCCCcccccCCCcccccCCC
Q 018363 124 TFLLFQKRDDARQFMKFLH--P-DLGVELPERSYGADCRIYVHENP 166 (357)
Q Consensus 124 vFLLFq~~~daR~~l~~ld--P-~Lg~~l~eksYa~nC~i~tp~~p 166 (357)
.|+-|.+.++|+++++.++ | .++....+-+|+..=++.+|.++
T Consensus 54 AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~ 99 (104)
T d1wexa_ 54 ALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNS 99 (104)
T ss_dssp EEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCCS
T ss_pred EEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCCCccCCCCCC
Confidence 5889999999999999873 2 35444445577766566665443
No 8
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=5.67 E-value=1.2e+02 Score=22.37 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=18.3
Q ss_pred ChHHHHHHHH-HHcCCCCCCCCcc
Q 018363 130 KRDDARQFMK-FLHPDLGVELPER 152 (357)
Q Consensus 130 ~~~daR~~l~-~ldP~Lg~~l~ek 152 (357)
+.++++..|+ ..||++|..+.+-
T Consensus 6 t~~~V~~aL~~V~DPe~~~dIV~L 29 (102)
T d1uwda_ 6 TKEDVLNALKNVIDFELGLDVVSL 29 (102)
T ss_dssp CHHHHHHHHTTCBCTTTSSBTTTT
T ss_pred CHHHHHHHHhCCCCCCCCcceeec
Confidence 5678889997 5699999887763
No 9
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=1e+02 Score=22.92 Aligned_cols=22 Identities=23% Similarity=0.609 Sum_probs=16.2
Q ss_pred HHHhccChHHHHHHHHHHcCCCC
Q 018363 124 TFLLFQKRDDARQFMKFLHPDLG 146 (357)
Q Consensus 124 vFLLFq~~~daR~~l~~ldP~Lg 146 (357)
.|+-|+|.++.+++++.+ |++|
T Consensus 88 ~~~~F~~~~~~~~v~~~l-~~v~ 109 (110)
T d1t77a2 88 VMFNFPDPATVKKVVNFL-PRVG 109 (110)
T ss_dssp EEEECSSHHHHHHHHHHS-CSCT
T ss_pred EEEEeCCHHHHHHHHHhc-cccC
Confidence 466788888888888877 5555
No 10
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=5.36 E-value=98 Score=20.65 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHhccChHHHHHHHHHHc
Q 018363 125 FLLFQKRDDARQFMKFLH 142 (357)
Q Consensus 125 FLLFq~~~daR~~l~~ld 142 (357)
|+-|.+.++|++.++.+|
T Consensus 48 fV~f~~~~~A~~ai~~ln 65 (82)
T d1b7fa1 48 FVDFTSEMDSQRAIKVLN 65 (82)
T ss_dssp EEEESSHHHHHHHHHHHT
T ss_pred eEEECCHHHHHHHHHHhC
Done!