Query 018364
Match_columns 357
No_of_seqs 351 out of 2947
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 3.8E-23 1.3E-27 184.0 11.8 130 104-234 54-193 (194)
2 2l0b_A E3 ubiquitin-protein li 99.7 1.3E-17 4.4E-22 131.2 7.9 79 268-348 11-89 (91)
3 1x4j_A Ring finger protein 38; 99.7 2.3E-17 7.9E-22 124.8 4.1 70 277-349 4-73 (75)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.3E-15 4.3E-20 113.2 6.8 58 295-353 11-68 (69)
5 2ep4_A Ring finger protein 24; 99.6 2.3E-15 8E-20 113.3 6.5 57 295-352 12-68 (74)
6 1iym_A EL5; ring-H2 finger, ub 99.6 1.1E-15 3.8E-20 108.3 4.4 51 296-347 3-54 (55)
7 2ect_A Ring finger protein 126 99.5 3.9E-15 1.3E-19 113.2 5.8 55 295-350 12-66 (78)
8 2ecl_A Ring-box protein 2; RNF 99.5 8.7E-15 3E-19 112.5 4.4 52 297-349 14-77 (81)
9 1v87_A Deltex protein 2; ring- 99.5 1.7E-14 5.9E-19 117.5 6.1 59 297-355 24-101 (114)
10 2ecm_A Ring finger and CHY zin 99.5 2.1E-14 7.2E-19 101.5 5.1 51 296-347 3-54 (55)
11 2d8s_A Cellular modulator of i 99.5 3.5E-14 1.2E-18 108.9 5.9 58 295-353 12-75 (80)
12 2ea6_A Ring finger protein 4; 99.4 7.9E-14 2.7E-18 102.9 4.8 53 295-348 12-68 (69)
13 3dpl_R Ring-box protein 1; ubi 99.4 8.2E-14 2.8E-18 112.5 4.2 50 297-347 36-100 (106)
14 3ng2_A RNF4, snurf, ring finge 99.4 6.9E-14 2.4E-18 104.0 3.4 54 295-349 7-64 (71)
15 2xeu_A Ring finger protein 4; 99.4 1.1E-13 3.8E-18 100.6 3.4 52 297-349 2-57 (64)
16 2ecn_A Ring finger protein 141 99.3 2.5E-13 8.6E-18 100.9 2.7 52 295-351 12-63 (70)
17 2ct2_A Tripartite motif protei 99.3 1.1E-12 3.8E-17 101.5 6.2 55 295-349 12-69 (88)
18 1chc_A Equine herpes virus-1 r 99.3 7E-13 2.4E-17 97.8 4.6 50 296-348 3-52 (68)
19 2djb_A Polycomb group ring fin 99.3 1.9E-12 6.5E-17 96.8 5.9 54 295-351 12-65 (72)
20 4a0k_B E3 ubiquitin-protein li 99.3 2.4E-13 8.2E-18 111.5 0.6 51 297-348 47-112 (117)
21 2d8t_A Dactylidin, ring finger 99.3 9.2E-13 3.1E-17 98.3 3.5 51 295-349 12-62 (71)
22 2ecy_A TNF receptor-associated 99.3 2.2E-12 7.6E-17 94.7 5.1 52 295-349 12-63 (66)
23 2ysl_A Tripartite motif-contai 99.3 4E-12 1.4E-16 94.9 5.2 52 295-349 17-70 (73)
24 2yur_A Retinoblastoma-binding 99.3 6E-12 2E-16 94.7 5.7 52 295-349 12-65 (74)
25 1g25_A CDK-activating kinase a 99.2 4E-12 1.4E-16 93.0 4.4 52 298-349 3-56 (65)
26 2csy_A Zinc finger protein 183 99.2 7.5E-12 2.6E-16 95.6 5.0 49 295-347 12-60 (81)
27 2ct0_A Non-SMC element 1 homol 99.2 1.2E-11 4.1E-16 93.1 5.1 54 295-350 12-66 (74)
28 1t1h_A Gspef-atpub14, armadill 99.2 1.3E-11 4.4E-16 93.5 4.9 52 295-349 5-56 (78)
29 4ap4_A E3 ubiquitin ligase RNF 99.2 9.5E-12 3.2E-16 103.2 3.4 53 296-349 5-61 (133)
30 2ecw_A Tripartite motif-contai 99.2 3.2E-11 1.1E-15 92.2 6.2 52 295-349 16-72 (85)
31 2ysj_A Tripartite motif-contai 99.2 3E-11 1E-15 87.7 5.6 45 295-342 17-63 (63)
32 3lrq_A E3 ubiquitin-protein li 99.2 1.1E-11 3.7E-16 98.8 3.3 51 297-349 21-71 (100)
33 2egp_A Tripartite motif-contai 99.1 8.6E-12 2.9E-16 94.5 2.1 52 295-349 9-66 (79)
34 4ayc_A E3 ubiquitin-protein li 99.1 1.4E-11 4.6E-16 104.0 3.4 48 298-349 53-100 (138)
35 2ecj_A Tripartite motif-contai 99.1 3E-11 1E-15 85.9 4.5 45 295-342 12-58 (58)
36 2ecv_A Tripartite motif-contai 99.1 7.2E-11 2.5E-15 90.3 6.5 52 295-349 16-72 (85)
37 4ap4_A E3 ubiquitin ligase RNF 99.1 2.5E-11 8.6E-16 100.6 3.3 53 296-349 70-126 (133)
38 3ztg_A E3 ubiquitin-protein li 99.1 8.7E-11 3E-15 91.7 5.9 50 295-347 10-61 (92)
39 3fl2_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 98.7 4.4 48 298-348 52-99 (124)
40 2y43_A E3 ubiquitin-protein li 99.1 5.6E-11 1.9E-15 94.3 3.2 48 298-348 22-69 (99)
41 2ckl_B Ubiquitin ligase protei 99.1 7E-11 2.4E-15 102.4 3.9 50 297-348 53-102 (165)
42 2ckl_A Polycomb group ring fin 99.0 1.1E-10 3.6E-15 94.2 3.8 50 297-349 14-63 (108)
43 1e4u_A Transcriptional repress 99.0 2E-10 6.8E-15 87.4 5.0 55 295-350 8-64 (78)
44 1jm7_A BRCA1, breast cancer ty 99.0 1.6E-10 5.6E-15 93.2 4.3 49 298-349 21-71 (112)
45 3hct_A TNF receptor-associated 99.0 1.7E-10 5.8E-15 94.5 3.9 52 295-349 15-66 (118)
46 1z6u_A NP95-like ring finger p 99.0 1.9E-10 6.4E-15 98.5 4.1 49 298-349 78-126 (150)
47 1bor_A Transcription factor PM 99.0 1.4E-10 4.8E-15 82.5 2.5 50 296-352 4-53 (56)
48 1rmd_A RAG1; V(D)J recombinati 99.0 8.5E-11 2.9E-15 95.9 1.5 49 298-349 23-71 (116)
49 3l11_A E3 ubiquitin-protein li 99.0 9.8E-11 3.4E-15 95.4 1.1 49 297-348 14-62 (115)
50 2y1n_A E3 ubiquitin-protein li 98.9 9.8E-10 3.3E-14 107.1 4.5 51 296-349 330-380 (389)
51 1vyx_A ORF K3, K3RING; zinc-bi 98.9 1.6E-09 5.4E-14 78.2 4.4 51 295-348 3-59 (60)
52 2vje_A E3 ubiquitin-protein li 98.8 1.1E-09 3.9E-14 79.9 3.0 47 297-347 7-56 (64)
53 2ek8_A Aminopeptidase; metallo 98.8 1.8E-08 6.1E-13 99.8 12.2 92 117-215 90-181 (421)
54 3knv_A TNF receptor-associated 98.8 8.1E-10 2.8E-14 93.5 2.1 51 295-348 28-78 (141)
55 2kre_A Ubiquitin conjugation f 98.8 3E-09 1E-13 84.7 4.2 50 295-348 26-75 (100)
56 2kr4_A Ubiquitin conjugation f 98.8 4.8E-09 1.7E-13 81.0 4.6 50 295-348 11-60 (85)
57 3iib_A Peptidase M28; YP_92679 98.8 2.7E-08 9.2E-13 99.3 10.8 107 107-218 93-216 (444)
58 2vje_B MDM4 protein; proto-onc 98.7 2.4E-09 8.2E-14 77.9 2.1 47 297-347 6-55 (63)
59 1wgm_A Ubiquitin conjugation f 98.7 8.7E-09 3E-13 81.7 4.9 51 295-349 19-70 (98)
60 1jm7_B BARD1, BRCA1-associated 98.7 2.8E-09 9.7E-14 87.0 1.7 45 298-348 22-67 (117)
61 3k1l_B Fancl; UBC, ring, RWD, 98.7 3.3E-09 1.1E-13 100.9 2.2 55 295-349 305-374 (381)
62 4ic3_A E3 ubiquitin-protein li 98.7 5.5E-09 1.9E-13 78.4 2.3 43 298-348 24-67 (74)
63 3hcs_A TNF receptor-associated 98.7 8.8E-09 3E-13 89.5 3.2 52 295-349 15-66 (170)
64 2c2l_A CHIP, carboxy terminus 98.7 1.2E-08 4.1E-13 94.7 4.2 51 295-348 205-255 (281)
65 2ea5_A Cell growth regulator w 98.6 3.4E-08 1.2E-12 73.0 4.9 46 295-348 12-58 (68)
66 1wim_A KIAA0161 protein; ring 98.6 1.2E-08 4.1E-13 80.0 2.1 49 297-345 4-61 (94)
67 2yu4_A E3 SUMO-protein ligase 98.6 2.8E-08 9.6E-13 78.1 3.7 47 296-345 5-59 (94)
68 2ecg_A Baculoviral IAP repeat- 98.5 3.4E-08 1.2E-12 74.2 2.3 44 298-349 25-69 (75)
69 2f42_A STIP1 homology and U-bo 98.5 5.9E-08 2E-12 85.1 3.8 51 295-348 103-153 (179)
70 3fed_A Glutamate carboxypeptid 98.4 3.8E-07 1.3E-11 95.7 8.0 99 116-217 123-268 (707)
71 2yho_A E3 ubiquitin-protein li 98.3 1.2E-07 4E-12 72.1 1.9 43 298-348 18-61 (79)
72 3kas_A Transferrin receptor pr 98.3 6.8E-07 2.3E-11 92.9 7.4 96 117-216 105-230 (640)
73 2bay_A PRE-mRNA splicing facto 98.2 4.8E-07 1.6E-11 65.3 2.3 48 298-349 3-51 (61)
74 3t6p_A Baculoviral IAP repeat- 98.2 3.9E-07 1.3E-11 87.9 1.9 44 297-348 294-338 (345)
75 3htk_C E3 SUMO-protein ligase 98.1 8.1E-07 2.8E-11 81.8 2.6 51 296-348 179-232 (267)
76 3vk6_A E3 ubiquitin-protein li 98.1 2.1E-06 7.2E-11 67.3 3.9 47 300-348 3-49 (101)
77 3i6s_A Subtilisin-like proteas 97.9 1E-05 3.5E-10 84.3 6.1 88 123-218 260-347 (649)
78 1y9z_A Alkaline serine proteas 97.8 3.5E-05 1.2E-09 76.6 8.5 73 145-217 271-350 (441)
79 3nw0_A Non-structural maintena 97.7 1.9E-05 6.6E-10 72.2 3.7 51 297-349 179-230 (238)
80 1xf1_A C5A peptidase, SCP; hyd 97.7 6E-05 2E-09 81.6 7.8 66 145-213 278-343 (926)
81 2lri_C Autoimmune regulator; Z 93.9 0.049 1.7E-06 39.4 3.7 50 295-347 9-61 (66)
82 2jun_A Midline-1; B-BOX, TRIM, 92.9 0.053 1.8E-06 42.1 2.7 34 298-331 3-36 (101)
83 2ko5_A Ring finger protein Z; 92.8 0.062 2.1E-06 41.4 2.8 50 295-350 25-75 (99)
84 2k16_A Transcription initiatio 87.7 0.14 4.6E-06 37.7 0.6 54 295-348 15-71 (75)
85 1we9_A PHD finger family prote 87.3 0.18 6.2E-06 35.8 1.1 50 296-345 4-58 (64)
86 1wil_A KIAA1045 protein; ring 86.6 0.51 1.7E-05 35.5 3.2 36 295-331 12-47 (89)
87 2ysm_A Myeloid/lymphoid or mix 86.6 0.22 7.5E-06 39.4 1.3 49 295-343 4-55 (111)
88 3v43_A Histone acetyltransfera 85.9 0.58 2E-05 37.1 3.5 48 296-343 3-62 (112)
89 2l5u_A Chromodomain-helicase-D 85.8 0.39 1.3E-05 33.9 2.2 47 295-344 8-57 (61)
90 3lqh_A Histone-lysine N-methyl 85.6 0.2 6.9E-06 43.5 0.7 49 298-346 2-64 (183)
91 3vta_A Cucumisin; subtilisin-l 84.1 1 3.5E-05 46.3 5.3 60 146-216 280-339 (621)
92 1fp0_A KAP-1 corepressor; PHD 83.6 0.6 2.1E-05 35.6 2.5 50 295-347 22-74 (88)
93 1mm2_A MI2-beta; PHD, zinc fin 82.7 0.39 1.3E-05 33.9 1.0 49 295-346 6-57 (61)
94 2yql_A PHD finger protein 21A; 81.8 0.19 6.4E-06 34.8 -0.9 47 295-344 6-55 (56)
95 1f62_A Transcription factor WS 81.7 0.54 1.9E-05 31.6 1.4 45 300-344 2-49 (51)
96 2yt5_A Metal-response element- 81.3 0.24 8.3E-06 35.3 -0.5 52 296-347 4-63 (66)
97 1wem_A Death associated transc 78.7 0.79 2.7E-05 33.6 1.6 48 298-346 16-71 (76)
98 3o36_A Transcription intermedi 77.9 0.76 2.6E-05 39.6 1.5 47 297-346 3-52 (184)
99 2puy_A PHD finger protein 21A; 77.8 0.2 6.7E-06 35.2 -1.9 50 297-349 4-56 (60)
100 2e6s_A E3 ubiquitin-protein li 77.1 0.49 1.7E-05 35.1 -0.0 48 298-345 26-77 (77)
101 2kwj_A Zinc finger protein DPF 76.8 0.76 2.6E-05 36.6 1.1 33 299-331 2-41 (114)
102 3u5n_A E3 ubiquitin-protein li 74.5 0.85 2.9E-05 40.1 0.9 49 295-346 4-55 (207)
103 2lbm_A Transcriptional regulat 74.5 2.5 8.6E-05 35.0 3.7 47 295-344 60-116 (142)
104 2lv9_A Histone-lysine N-methyl 74.2 1.1 3.6E-05 34.8 1.3 47 297-344 27-75 (98)
105 2xb1_A Pygopus homolog 2, B-ce 73.8 0.6 2.1E-05 36.7 -0.3 50 298-347 3-63 (105)
106 3asl_A E3 ubiquitin-protein li 73.3 0.62 2.1E-05 33.8 -0.3 46 300-345 20-69 (70)
107 2cu8_A Cysteine-rich protein 2 73.3 3.2 0.00011 29.8 3.7 42 297-349 8-49 (76)
108 1wep_A PHF8; structural genomi 73.2 2.8 9.4E-05 30.9 3.3 50 296-346 10-64 (79)
109 1xwh_A Autoimmune regulator; P 72.7 0.84 2.9E-05 32.6 0.3 47 296-345 6-55 (66)
110 1weu_A Inhibitor of growth fam 71.7 2.7 9.1E-05 32.2 3.0 47 296-346 34-86 (91)
111 1iml_A CRIP, cysteine rich int 70.4 1.9 6.6E-05 31.0 1.9 13 299-311 28-40 (76)
112 2co8_A NEDD9 interacting prote 70.2 3.4 0.00012 30.3 3.2 43 296-349 13-55 (82)
113 2kgg_A Histone demethylase jar 70.2 1.7 5.7E-05 29.4 1.4 44 300-343 4-52 (52)
114 1wev_A Riken cDNA 1110020M19; 68.5 0.78 2.7E-05 34.8 -0.7 54 297-350 15-77 (88)
115 2ri7_A Nucleosome-remodeling f 67.9 1.4 4.8E-05 37.4 0.7 49 296-345 6-59 (174)
116 3ask_A E3 ubiquitin-protein li 67.5 1.4 4.8E-05 39.4 0.7 48 298-345 174-225 (226)
117 2dj7_A Actin-binding LIM prote 67.4 3.9 0.00013 29.9 3.0 40 297-347 14-53 (80)
118 2e6r_A Jumonji/ARID domain-con 67.3 0.59 2E-05 35.8 -1.6 51 295-345 13-66 (92)
119 3v43_A Histone acetyltransfera 67.2 1.7 5.7E-05 34.4 1.0 45 300-344 63-111 (112)
120 2vpb_A Hpygo1, pygopus homolog 67.2 3.9 0.00013 29.1 2.9 35 295-329 5-41 (65)
121 1wen_A Inhibitor of growth fam 67.0 3.8 0.00013 29.7 2.8 47 296-346 14-66 (71)
122 1wew_A DNA-binding family prot 66.6 2 6.9E-05 31.6 1.3 50 296-346 14-73 (78)
123 3shb_A E3 ubiquitin-protein li 65.2 0.91 3.1E-05 33.7 -0.9 46 300-345 28-77 (77)
124 2kwj_A Zinc finger protein DPF 61.8 0.56 1.9E-05 37.4 -2.8 49 300-348 60-111 (114)
125 2ysm_A Myeloid/lymphoid or mix 60.2 1.8 6.3E-05 33.9 0.0 48 300-347 56-106 (111)
126 3ql9_A Transcriptional regulat 59.5 7 0.00024 31.8 3.4 47 295-344 54-110 (129)
127 3o70_A PHD finger protein 13; 58.8 1.8 6.3E-05 31.1 -0.2 49 295-344 16-66 (68)
128 3m62_A Ubiquitin conjugation f 58.2 5.3 0.00018 43.0 3.1 50 295-348 888-938 (968)
129 1wee_A PHD finger family prote 57.7 2.3 7.8E-05 30.8 0.1 48 297-345 15-66 (72)
130 4gne_A Histone-lysine N-methyl 56.8 6.8 0.00023 30.8 2.8 50 295-349 12-66 (107)
131 2d8x_A Protein pinch; LIM doma 56.8 9.5 0.00032 26.6 3.4 41 297-349 4-44 (70)
132 2cor_A Pinch protein; LIM doma 56.3 10 0.00035 27.4 3.6 42 296-349 13-54 (79)
133 2rsd_A E3 SUMO-protein ligase 56.1 1.3 4.6E-05 31.7 -1.3 46 298-344 10-64 (68)
134 1x63_A Skeletal muscle LIM-pro 56.0 12 0.0004 27.0 3.9 42 298-349 15-56 (82)
135 1zfo_A LAsp-1; LIM domain, zin 55.3 4.1 0.00014 24.4 1.0 29 298-328 3-31 (31)
136 1a7i_A QCRP2 (LIM1); LIM domai 54.7 4.5 0.00015 29.4 1.3 41 298-349 7-47 (81)
137 1nyp_A Pinch protein; LIM doma 54.2 6.1 0.00021 27.3 1.9 39 298-348 5-43 (66)
138 1g47_A Pinch protein; LIM doma 54.0 13 0.00043 26.4 3.7 44 296-349 9-52 (77)
139 2dar_A PDZ and LIM domain prot 54.0 10 0.00036 28.0 3.4 41 297-349 24-64 (90)
140 1wyh_A SLIM 2, skeletal muscle 53.7 15 0.00051 25.6 4.1 42 298-349 5-46 (72)
141 1x4k_A Skeletal muscle LIM-pro 53.4 12 0.00042 26.1 3.6 42 298-349 5-46 (72)
142 1x61_A Thyroid receptor intera 53.3 15 0.0005 25.7 4.0 40 298-347 5-44 (72)
143 3c6w_A P28ING5, inhibitor of g 52.8 2.7 9.2E-05 29.3 -0.2 44 297-344 8-57 (59)
144 2d8y_A Eplin protein; LIM doma 52.2 13 0.00043 27.6 3.6 42 297-349 14-55 (91)
145 2d8v_A Zinc finger FYVE domain 52.2 11 0.00037 26.9 2.9 33 295-331 5-38 (67)
146 1x4l_A Skeletal muscle LIM-pro 51.4 15 0.00051 25.7 3.7 41 298-348 5-47 (72)
147 2vnf_A ING 4, P29ING4, inhibit 50.8 2.9 9.8E-05 29.2 -0.3 44 297-344 9-58 (60)
148 1x6a_A LIMK-2, LIM domain kina 50.4 9.3 0.00032 27.5 2.5 38 299-348 16-53 (81)
149 2yw8_A RUN and FYVE domain-con 49.7 12 0.00041 27.6 3.0 55 296-350 17-77 (82)
150 1x64_A Alpha-actinin-2 associa 49.2 22 0.00074 26.1 4.5 43 295-349 22-64 (89)
151 1x68_A FHL5 protein; four-and- 48.9 15 0.0005 26.1 3.4 40 298-347 5-46 (76)
152 1weo_A Cellulose synthase, cat 48.6 41 0.0014 25.4 5.8 52 296-347 14-69 (93)
153 1v6g_A Actin binding LIM prote 48.1 13 0.00045 26.7 3.1 38 299-348 16-53 (81)
154 2cur_A Skeletal muscle LIM-pro 47.7 15 0.00052 25.4 3.2 39 298-348 5-43 (69)
155 3i2d_A E3 SUMO-protein ligase 46.4 15 0.00051 35.2 3.8 46 300-347 251-299 (371)
156 3f6q_B LIM and senescent cell 44.4 16 0.00056 25.2 3.0 43 297-349 10-52 (72)
157 2ku3_A Bromodomain-containing 44.4 16 0.00053 26.4 2.8 51 295-345 13-66 (71)
158 4fo9_A E3 SUMO-protein ligase 43.2 18 0.00061 34.5 3.8 47 300-348 217-266 (360)
159 2l43_A N-teminal domain from h 43.2 13 0.00043 28.0 2.3 53 295-347 22-77 (88)
160 2l3k_A Rhombotin-2, linker, LI 41.7 15 0.00051 28.9 2.7 35 299-334 37-71 (123)
161 3o7a_A PHD finger protein 13 v 41.5 4.2 0.00014 27.3 -0.6 42 303-344 8-51 (52)
162 2d8z_A Four and A half LIM dom 40.8 24 0.00083 24.3 3.4 39 298-348 5-43 (70)
163 1zbd_B Rabphilin-3A; G protein 40.0 12 0.00043 30.4 1.9 33 296-328 53-87 (134)
164 1x62_A C-terminal LIM domain p 39.8 24 0.00082 25.2 3.3 40 296-347 13-52 (79)
165 2g6q_A Inhibitor of growth pro 39.1 5.9 0.0002 27.8 -0.2 44 297-344 10-59 (62)
166 1b8t_A Protein (CRP1); LIM dom 38.3 17 0.0006 30.9 2.7 28 298-327 115-142 (192)
167 1z2q_A LM5-1; membrane protein 38.1 23 0.0008 26.1 3.1 53 296-348 19-79 (84)
168 2egq_A FHL1 protein; LIM domai 37.9 21 0.00073 25.2 2.8 41 298-349 15-59 (77)
169 2cup_A Skeletal muscle LIM-pro 37.8 28 0.00094 26.0 3.5 45 299-348 34-78 (101)
170 2dlo_A Thyroid receptor-intera 37.7 23 0.00077 25.4 2.9 41 297-349 14-54 (81)
171 2cs3_A Protein C14ORF4, MY039 37.5 66 0.0023 23.8 5.2 38 296-334 13-52 (93)
172 2l4z_A DNA endonuclease RBBP8, 36.3 16 0.00055 29.0 2.0 39 298-347 61-99 (123)
173 1x3h_A Leupaxin; paxillin fami 36.1 26 0.00091 24.9 3.1 40 298-349 15-54 (80)
174 1z60_A TFIIH basal transcripti 36.1 19 0.00063 25.1 2.0 43 299-342 16-58 (59)
175 3t7l_A Zinc finger FYVE domain 34.5 20 0.00069 26.9 2.2 50 297-346 19-74 (90)
176 3mjh_B Early endosome antigen 34.3 4.3 0.00015 25.2 -1.3 16 298-313 5-20 (34)
177 1wfk_A Zinc finger, FYVE domai 33.1 35 0.0012 25.5 3.3 54 296-349 7-67 (88)
178 2ehe_A Four and A half LIM dom 32.5 31 0.0011 24.6 2.9 41 298-348 15-55 (82)
179 1vfy_A Phosphatidylinositol-3- 32.4 30 0.001 24.7 2.8 32 298-329 11-43 (73)
180 1m3v_A FLIN4, fusion of the LI 32.4 27 0.00094 27.3 2.8 47 300-348 34-81 (122)
181 2gmg_A Hypothetical protein PF 32.3 12 0.00041 29.2 0.6 26 318-349 72-97 (105)
182 2l2t_A Receptor tyrosine-prote 32.1 17 0.00059 23.8 1.2 11 251-261 29-39 (44)
183 1joc_A EEA1, early endosomal a 31.6 23 0.00078 28.3 2.2 34 297-330 68-102 (125)
184 1x4u_A Zinc finger, FYVE domai 31.4 31 0.0011 25.4 2.8 35 296-330 12-47 (84)
185 2ks1_B Epidermal growth factor 31.1 13 0.00045 24.3 0.5 10 251-260 30-39 (44)
186 2cuq_A Four and A half LIM dom 31.0 37 0.0013 24.0 3.1 39 298-348 15-53 (80)
187 2iyb_E Testin, TESS, TES; LIM 31.0 25 0.00087 24.0 2.1 40 299-349 3-45 (65)
188 1wd2_A Ariadne-1 protein homol 30.4 15 0.00051 25.6 0.7 19 331-349 1-19 (60)
189 1dvp_A HRS, hepatocyte growth 29.3 27 0.00092 30.5 2.5 34 297-330 160-194 (220)
190 1j2o_A FLIN2, fusion of rhombo 29.3 36 0.0012 26.2 3.0 27 299-327 4-30 (114)
191 2xqn_T Testin, TESS; metal-bin 28.5 38 0.0013 26.3 3.1 47 298-349 30-76 (126)
192 3zyq_A Hepatocyte growth facto 28.4 28 0.00097 30.7 2.4 54 297-350 163-224 (226)
193 1wig_A KIAA1808 protein; LIM d 28.3 49 0.0017 23.2 3.3 38 298-347 5-42 (73)
194 2klu_A T-cell surface glycopro 25.5 20 0.00068 25.6 0.7 16 244-259 20-35 (70)
195 2o35_A Hypothetical protein DU 25.1 27 0.00092 27.0 1.4 13 322-334 42-54 (105)
196 3fyb_A Protein of unknown func 25.0 27 0.00092 26.9 1.4 13 322-334 41-53 (104)
197 2rgt_A Fusion of LIM/homeobox 24.5 57 0.002 26.9 3.6 40 299-348 66-105 (169)
198 2jmi_A Protein YNG1, ING1 homo 24.0 18 0.00061 27.4 0.2 45 296-344 24-75 (90)
199 3kqi_A GRC5, PHD finger protei 23.8 24 0.00081 25.4 0.8 47 298-345 10-61 (75)
200 3mpx_A FYVE, rhogef and PH dom 23.7 17 0.00057 35.0 0.0 51 297-347 374-431 (434)
201 2zet_C Melanophilin; complex, 23.5 35 0.0012 28.4 1.9 33 296-328 66-100 (153)
202 2xjy_A Rhombotin-2; oncoprotei 23.3 52 0.0018 25.7 2.9 39 300-348 68-106 (131)
203 1iko_P Ephrin-B2; greek KEY, g 23.0 25 0.00086 30.1 1.0 10 3-12 105-114 (178)
204 3kv5_D JMJC domain-containing 22.7 15 0.00051 36.5 -0.6 48 297-345 36-88 (488)
205 2kdx_A HYPA, hydrogenase/ureas 20.8 31 0.0011 27.1 1.1 28 314-348 74-102 (119)
206 2jvx_A NF-kappa-B essential mo 20.8 26 0.00089 20.6 0.4 11 338-348 5-15 (28)
207 2jtn_A LIM domain-binding prot 20.7 59 0.002 27.2 2.9 47 297-349 86-132 (182)
208 3a1b_A DNA (cytosine-5)-methyl 20.5 67 0.0023 26.9 3.1 36 295-334 76-114 (159)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=183.96 Aligned_cols=130 Identities=22% Similarity=0.337 Sum_probs=104.3
Q ss_pred ecccccccccccCCCCeEEEEeeCC---CCCCCCCCCCCCCCC----CCCcceEEEEEcCC-CChHHHHHHHHHcCCcEE
Q 018364 104 FPDLPAKFAVDVNSSGTCGALHVAD---PADACSPLSNPVASN----DADHINFVLIVRGQ-CIFEDKIRNAQAAGYRAA 175 (357)
Q Consensus 104 ~~~~~a~Fg~~~~~~~~~g~l~~~~---p~~aC~~~~~~~~~~----~~~~~~I~LV~RG~-CsF~~K~~~Aq~aGA~av 175 (357)
+.+.+|+||...+..++.|.|+.+. |.+||++.++...+. +..+++||||+||+ |+|.+|++|||++||+||
T Consensus 54 ~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~av 133 (194)
T 3icu_A 54 ELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGA 133 (194)
T ss_dssp EEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEE
T ss_pred ecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEE
Confidence 6677999999999999999998763 789999987643221 12468999999999 999999999999999999
Q ss_pred EEeccc-CcccccccccCCCcceeeEEEeehhhhhhhhhhcccC-CceeeecCCCCCcccc
Q 018364 176 IVYNDR-EKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHARGE-TGECCIFPESNRGSWS 234 (357)
Q Consensus 176 Iv~~~~-~~~~~~~m~~~~~~i~Ip~v~is~~~G~~L~~~l~~~-~~~v~I~p~~s~~~~~ 234 (357)
||||+. +++.+++|..++ ..+||++||++++|+.|+++++.+ .+.+.+.....+.+|.
T Consensus 134 IIyNn~~~g~~~~~m~~~~-~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~~h~pw~ 193 (194)
T 3icu_A 134 VIFNFPGTRNEVIPMSHPG-AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPWV 193 (194)
T ss_dssp EEECCTTCTTCCCCCCCTT-CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEEEECCCC
T ss_pred EEEeCCCCCCceeeecCCC-CCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCCccCCCC
Confidence 999985 334556676543 368999999999999999988765 4556666666666663
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=131.21 Aligned_cols=79 Identities=30% Similarity=0.653 Sum_probs=68.1
Q ss_pred CccccccchhHHhhccccccccCCCCCCCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 268 QPLSRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 268 ~~~~~~l~~~~i~~lp~~~~~~~~~~~~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
.....+++++.++.||...+...... ......|+||+++|..++.++.|||+|.||..||+.|++.+. +||+||+.+.
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~ 88 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGA-VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFP 88 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSS-SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-BCTTTCCBSS
T ss_pred CcCCCCCCHHHHHhCCCeeecccccc-cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-cCcCcCccCC
Confidence 34467899999999999888764433 456789999999999999999999999999999999999876 5999999886
Q ss_pred C
Q 018364 348 N 348 (357)
Q Consensus 348 ~ 348 (357)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=124.81 Aligned_cols=70 Identities=34% Similarity=0.812 Sum_probs=58.8
Q ss_pred hHHhhccccccccCCCCCCCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 277 KVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 277 ~~i~~lp~~~~~~~~~~~~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..++++|..+++.... ..+..+|+||+++|..++.++.|||+|.||..||++|++.+. .||+||+++.+.
T Consensus 4 ~~i~~lp~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSC--SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccc--cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCCCC
Confidence 3456788877765332 456789999999999999999999999999999999999976 599999998764
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=113.16 Aligned_cols=58 Identities=38% Similarity=0.843 Sum_probs=51.2
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCCCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESN 353 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~ 353 (357)
......|+||+++|..++.++.|||+|.||..||.+|+..+. +||+||+.+......+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~ 68 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEAQLPSE 68 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCSCCCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccCcCCCC
Confidence 456779999999999988999999999999999999999977 4999999998765543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=113.26 Aligned_cols=57 Identities=33% Similarity=0.797 Sum_probs=50.6
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (357)
.....+|+||+++|..++.+++|||+|.||..||++|++.+. +||+||+.+....+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSCCSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccccccc
Confidence 455789999999999999999999999999999999999977 599999999765543
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.57 E-value=1.1e-15 Score=108.26 Aligned_cols=51 Identities=43% Similarity=1.051 Sum_probs=46.2
Q ss_pred CCCcccccccccccCCCceEEeC-CCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 296 HGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
++..+|+||+++|+.++.++.+| |+|.||.+||++|++++. +||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC-cCcCCCCEeE
Confidence 45689999999999999999998 999999999999999866 5999999874
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=3.9e-15 Score=113.16 Aligned_cols=55 Identities=38% Similarity=0.954 Sum_probs=49.0
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (357)
.....+|+||+++|..++.++.|||+|.||..||..|++.+. .||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC-SCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC-cCcCcCCccCCcc
Confidence 455789999999999999999999999999999999998876 5999999986653
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.7e-15 Score=112.50 Aligned_cols=52 Identities=31% Similarity=0.763 Sum_probs=41.7
Q ss_pred CCccccccccccc-----------CCCceEEeC-CCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQ-----------DGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~-----------~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
++++|+||+++|+ .++.++.++ |+|.||.+||++||++++ +||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcchh
Confidence 3566777777775 456677776 999999999999999977 599999988653
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=1.7e-14 Score=117.55 Aligned_cols=59 Identities=24% Similarity=0.496 Sum_probs=46.2
Q ss_pred CCcccccccccccCCC---------------ceEEeCCCCccchhHHHHHHhc----CCCCCCcccccCcCCCCCCCC
Q 018364 297 GGETCAICLEDYQDGE---------------KLKVLSCKHEFHASCVDSWLTK----WGTFCPVCKHDMRNNSESNEV 355 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~---------------~vr~LpC~H~FH~~CI~~Wl~~----~~~~CPlCR~~i~~~~~~~~~ 355 (357)
.+++|+|||++|..++ .++.++|+|.||.+||+.|+.. .+.+||+||+.+.......+-
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 3579999999997653 4557899999999999999953 234699999999776554443
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.49 E-value=2.1e-14 Score=101.54 Aligned_cols=51 Identities=33% Similarity=0.704 Sum_probs=44.2
Q ss_pred CCCcccccccccccCC-CceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 296 HGGETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
.+..+|+||+++|.++ +.++.+||+|.||.+||++|++.+. .||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-CCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-cCCCCCCcCC
Confidence 3568999999999665 4678899999999999999999975 5999999875
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.5e-14 Score=108.90 Aligned_cols=58 Identities=22% Similarity=0.604 Sum_probs=48.4
Q ss_pred CCCCcccccccccccCCCceEEeCCC-----CccchhHHHHHHhcCC-CCCCcccccCcCCCCCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCK-----HEFHASCVDSWLTKWG-TFCPVCKHDMRNNSESN 353 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~-----H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~~~~~ 353 (357)
..+.+.|.||+++|++++.+ ++||+ |.||.+||++||..++ .+||+||+.+..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 44568999999999988877 69996 9999999999999864 46999999997655443
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.9e-14 Score=102.95 Aligned_cols=53 Identities=25% Similarity=0.678 Sum_probs=45.2
Q ss_pred CCCCcccccccccccCC----CceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..+..+|+||+++|.+. +.+..++|+|.||.+||+.|++.+. .||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-SCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-CCCCCCCccCc
Confidence 45578999999999763 4567899999999999999999866 59999998864
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.42 E-value=8.2e-14 Score=112.55 Aligned_cols=50 Identities=28% Similarity=0.634 Sum_probs=42.8
Q ss_pred CCcccccccccccCC---------------CceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 297 GGETCAICLEDYQDG---------------EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 297 ~~~~CaICLe~f~~~---------------~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
+.+.|+||+++|+.. ..++.++|+|.||..||++||..+. +||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-cCcCCCCcce
Confidence 468999999999854 1367889999999999999999976 5999999864
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.41 E-value=6.9e-14 Score=104.02 Aligned_cols=54 Identities=26% Similarity=0.739 Sum_probs=46.1
Q ss_pred CCCCcccccccccccC----CCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQD----GEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~----~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..+..+|+||+++|.+ ++.+..++|||.||.+||++|++.+. .||+||+.+..+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccChh
Confidence 3456799999999876 35668899999999999999999876 599999998754
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=100.58 Aligned_cols=52 Identities=23% Similarity=0.663 Sum_probs=44.7
Q ss_pred CCcccccccccccCC----CceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
+..+|+||+++|.+. +.+..++|||.||.+||++|++.+. .||+||+.+..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-BCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-CCCCCCccCCcc
Confidence 357999999999753 5567899999999999999999966 599999998764
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.5e-13 Score=100.88 Aligned_cols=52 Identities=33% Similarity=0.887 Sum_probs=44.7
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (357)
..+...|+||++.+.+ ..+||+|.||..||..|+..+. .||+||+.+.....
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHR-NCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCS-SCHHHHHCTTCCCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcC-cCCCcCCcccCCCc
Confidence 4557899999999877 7899999999999999999765 59999999986543
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=101.47 Aligned_cols=55 Identities=27% Similarity=0.634 Sum_probs=46.8
Q ss_pred CCCCcccccccccccCCCc-eEEeCCCCccchhHHHHHHhcC--CCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLTKW--GTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~~~--~~~CPlCR~~i~~~ 349 (357)
..+..+|+||++.|.+.+. .+.|+|||.||..||..|+..+ ...||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4557799999999998765 6788999999999999999986 34699999987654
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.33 E-value=7e-13 Score=97.81 Aligned_cols=50 Identities=34% Similarity=0.780 Sum_probs=42.9
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
....+|+||++++.+ .+..+||+|.||..||..|++.+. .||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHh
Confidence 346799999999864 457899999999999999999876 59999998864
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=96.81 Aligned_cols=54 Identities=22% Similarity=0.416 Sum_probs=44.4
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (357)
..+...|+||++.|.+ .+..++|+|.||..||+.|++.+. .||+||+.+.....
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVHQTQP 65 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCS-SCTTTCCCCCSSCS
T ss_pred cCCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCC-cCCCcCcccCcccc
Confidence 4556799999999876 344459999999999999998865 59999999876543
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.30 E-value=2.4e-13 Score=111.52 Aligned_cols=51 Identities=29% Similarity=0.683 Sum_probs=1.1
Q ss_pred CCcccccccccccC-------------CCc--eEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 297 GGETCAICLEDYQD-------------GEK--LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 297 ~~~~CaICLe~f~~-------------~~~--vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..+.|+||+++|+. ++. +..++|+|.||..||++||..++ +||+||++...
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeeee
Confidence 46899999999976 222 33458999999999999999976 59999998643
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.2e-13 Score=98.28 Aligned_cols=51 Identities=27% Similarity=0.521 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..+..+|+||++.+.+. ..+||+|.||..||+.|+..+. .||+||..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSS-BCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCC-cCcCcCchhCHh
Confidence 44567999999998663 6789999999999999999875 599999998643
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.2e-12 Score=94.71 Aligned_cols=52 Identities=21% Similarity=0.473 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..+...|+||++.+.+. ..++|||.||..||..|+...+..||+||+.+..+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 44567999999999765 24799999999999999975555699999998764
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=94.94 Aligned_cols=52 Identities=29% Similarity=0.583 Sum_probs=43.0
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc--CCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK--WGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~--~~~~CPlCR~~i~~~ 349 (357)
..+...|+||++.|.+ ...++|||.||..||..|++. .+..||+||+.+..+
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4557899999999885 356799999999999999973 344699999998764
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=6e-12 Score=94.68 Aligned_cols=52 Identities=21% Similarity=0.520 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCCceEEeC-CCCccchhHHHHHHhcCC-CCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWG-TFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~ 349 (357)
..+...|+||++.|.+. ..|| |+|.||..||+.|+..++ ..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 44567999999999864 4689 999999999999999753 3699999986544
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=4e-12 Score=93.03 Aligned_cols=52 Identities=29% Similarity=0.633 Sum_probs=42.9
Q ss_pred Ccccccccc-cccCCCc-eEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLE-DYQDGEK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe-~f~~~~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+||++ .|.+... +..++|||.||.+||+.|+.+.+..||+||+.+..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 568999999 7766543 346799999999999999887655799999998754
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.5e-12 Score=95.63 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
......|+||++.|.+. .++||+|.||..||..|+.... .||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATP-RCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCS-BCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCC-cCCCcCcccc
Confidence 44567999999998663 4689999999999999998865 5999999985
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=93.11 Aligned_cols=54 Identities=20% Similarity=0.488 Sum_probs=44.4
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC-CCCCCcccccCcCCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-GTFCPVCKHDMRNNS 350 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPlCR~~i~~~~ 350 (357)
.+..++|+||.+.+..++... .|+|.||..||++||+++ +.+||+||++...+.
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred cCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 345689999999999876444 899999999999999986 246999999886543
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.19 E-value=1.3e-11 Score=93.52 Aligned_cols=52 Identities=21% Similarity=0.389 Sum_probs=43.6
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..+...|+||++.|.+. ..++|||.||..||..|+...+..||+||+.+...
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 44578999999998764 56799999999999999987455699999998654
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=9.5e-12 Score=103.15 Aligned_cols=53 Identities=25% Similarity=0.703 Sum_probs=45.4
Q ss_pred CCCcccccccccccCC----CceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 296 HGGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.+..+|+||++.|++. +.++.++|||.||.+||++|++.++ +||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCccc
Confidence 3467999999999763 5668899999999999999999876 599999988754
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=3.2e-11 Score=92.24 Aligned_cols=52 Identities=27% Similarity=0.536 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC-----CCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-----GTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-----~~~CPlCR~~i~~~ 349 (357)
..+...|+||++.|.+. ..+||+|.||..||..|+... ...||+||..+..+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 45567999999998775 478999999999999999983 44699999998754
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3e-11 Score=87.69 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=37.8
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc--CCCCCCcc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK--WGTFCPVC 342 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~--~~~~CPlC 342 (357)
..+...|+||++.|.+. .+|+|||.||..||..|++. .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45578999999999864 56799999999999999985 34469998
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=98.81 Aligned_cols=51 Identities=27% Similarity=0.597 Sum_probs=42.7
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
+...|+||++.|.+ .+..++|||.||..||..|+..++..||+||..+..+
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 35699999999975 4444899999999999999999755699999998643
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=8.6e-12 Score=94.51 Aligned_cols=52 Identities=27% Similarity=0.530 Sum_probs=43.3
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC------CCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW------GTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~------~~~CPlCR~~i~~~ 349 (357)
..+...|+||++.|.+. ..|||||.||..||..|+... ...||+||..+..+
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 45578999999999764 458999999999999999873 44699999998653
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.15 E-value=1.4e-11 Score=103.97 Aligned_cols=48 Identities=29% Similarity=0.879 Sum_probs=41.3
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+||++.|.+. ..|||||.||..||..|+..+. .||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKI-ECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCS-BCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCC-cCCCCCCcCCCC
Confidence 35799999999763 6789999999999999999866 599999998653
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3e-11 Score=85.93 Aligned_cols=45 Identities=29% Similarity=0.849 Sum_probs=37.3
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc--CCCCCCcc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK--WGTFCPVC 342 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~--~~~~CPlC 342 (357)
..+...|+||++.+++. ..|+|+|.||.+||..|+.. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45567999999999875 45899999999999999764 34569998
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.2e-11 Score=90.25 Aligned_cols=52 Identities=31% Similarity=0.621 Sum_probs=43.1
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc-----CCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK-----WGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~-----~~~~CPlCR~~i~~~ 349 (357)
..+..+|+||++.|.+. ..+||+|.||..||..|+.. ....||+||..+..+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 45568999999998764 45799999999999999988 234699999998754
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=2.5e-11 Score=100.57 Aligned_cols=53 Identities=26% Similarity=0.772 Sum_probs=45.0
Q ss_pred CCCcccccccccccC----CCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 296 HGGETCAICLEDYQD----GEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 296 ~~~~~CaICLe~f~~----~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.+...|+||+++|++ ++....++|||.||..||++|+..++ +||+||..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCChh
Confidence 346789999999876 34557889999999999999999977 599999998764
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.10 E-value=8.7e-11 Score=91.74 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCCCceEEeC-CCCccchhHHHHHHhcCC-CCCCcccccCc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWG-TFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~-~~CPlCR~~i~ 347 (357)
..+...|+||++.|.+. ..|| |||.||..||..|+..++ ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45678999999999864 5789 999999999999998643 46999999874
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.09 E-value=4.6e-11 Score=98.70 Aligned_cols=48 Identities=23% Similarity=0.458 Sum_probs=41.8
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+||++.|.+. ..+||||.||..||..|+..+...||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46899999999863 5679999999999999999766579999999976
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.06 E-value=5.6e-11 Score=94.26 Aligned_cols=48 Identities=23% Similarity=0.624 Sum_probs=40.6
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+||++.|.+ .+..++|||.||..||..|+..+. .||+||..+..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKT-QCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCG
T ss_pred CCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCC-CCCCCCCcCCh
Confidence 5689999999986 344448999999999999999865 59999998865
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.05 E-value=7e-11 Score=102.41 Aligned_cols=50 Identities=26% Similarity=0.652 Sum_probs=42.0
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
+...|+||++.|.+ .+..+||||.||..||+.|+...+..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34599999999886 455559999999999999999855569999999854
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.03 E-value=1.1e-10 Score=94.18 Aligned_cols=50 Identities=22% Similarity=0.688 Sum_probs=42.2
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
+...|+||++.|.+ .+..++|||.||..||..|+..+. .||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSK-YCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCS-BCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCC-cCcCCCcccccc
Confidence 36799999999875 454459999999999999999865 599999998764
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.03 E-value=2e-10 Score=87.45 Aligned_cols=55 Identities=16% Similarity=0.454 Sum_probs=43.5
Q ss_pred CCCCcccccccccccCCCceEEeC--CCCccchhHHHHHHhcCCCCCCcccccCcCCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLS--CKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~Lp--C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (357)
..+..+|+||++.+...+. +.+| |||.||..|+..+.......||+||+.+...+
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 4556799999999875443 3455 99999999999998665557999999987654
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.6e-10 Score=93.25 Aligned_cols=49 Identities=31% Similarity=0.633 Sum_probs=41.2
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCC--CCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG--TFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~--~~CPlCR~~i~~~ 349 (357)
...|+||++.|.+. ..+||||.||..||..|+..++ ..||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 46899999998764 3579999999999999999753 3599999988764
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.00 E-value=1.7e-10 Score=94.55 Aligned_cols=52 Identities=25% Similarity=0.515 Sum_probs=44.1
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..+...|+||++.+.+. ..++|||.||..||..|+...+..||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 45567999999998764 56899999999999999998764699999988653
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.99 E-value=1.9e-10 Score=98.45 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=42.5
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+||++.|.+. .+|||||.||..||..|+......||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 46899999998764 45899999999999999998665699999998765
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=1.4e-10 Score=82.46 Aligned_cols=50 Identities=22% Similarity=0.573 Sum_probs=40.8
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCCCCC
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (357)
.+...|+||++.|.+. +.|||+|.||..||..| ...||+||+.+....++
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~ 53 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADT 53 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSC
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecCCcC
Confidence 4567899999999864 67899999999999883 33599999998876443
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=8.5e-11 Score=95.90 Aligned_cols=49 Identities=31% Similarity=0.613 Sum_probs=41.7
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+||++.+.+. ..++|||.||..||..|+...+..||+||..+...
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 56899999998763 45899999999999999998554699999998654
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.96 E-value=9.8e-11 Score=95.37 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
+...|+||++.|.+. ..|+|||.||..||..|+...+..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356899999998764 5679999999999999998755579999998853
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.87 E-value=9.8e-10 Score=107.09 Aligned_cols=51 Identities=31% Similarity=0.765 Sum_probs=42.3
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
....+|+||++.+.. ...+||||.||..||..|+......||+||+.+...
T Consensus 330 ~~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 345799999999855 578999999999999999995444699999988653
No 51
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.87 E-value=1.6e-09 Score=78.25 Aligned_cols=51 Identities=29% Similarity=0.621 Sum_probs=39.7
Q ss_pred CCCCcccccccccccCCCceEEeCCC--C---ccchhHHHHHHhcC-CCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCK--H---EFHASCVDSWLTKW-GTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~--H---~FH~~CI~~Wl~~~-~~~CPlCR~~i~~ 348 (357)
.++...|.||+++. ++.+ ++||. | .||.+||++|+... +.+||+||..+..
T Consensus 3 ~~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 34578999999983 3445 68964 4 89999999999863 4569999988753
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.84 E-value=1.1e-09 Score=79.92 Aligned_cols=47 Identities=23% Similarity=0.537 Sum_probs=38.8
Q ss_pred CCcccccccccccCCCceEEe--CCCCc-cchhHHHHHHhcCCCCCCcccccCc
Q 018364 297 GGETCAICLEDYQDGEKLKVL--SCKHE-FHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~L--pC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
++.+|.||++++.+. ..+ ||||. |+.+|++.|.+.++ .||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTC-CCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCC-cCCCcCcchh
Confidence 457999999986553 344 99999 78999999998766 5999999885
No 53
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.83 E-value=1.8e-08 Score=99.83 Aligned_cols=92 Identities=24% Similarity=0.323 Sum_probs=67.4
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccccccCCCcc
Q 018364 117 SSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGV 196 (357)
Q Consensus 117 ~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~~m~~~~~~i 196 (357)
..++.|.|++..-. ..+++. ..+.+++||||+||+|+|.+|+++|+++||+|||||++.+. ....+.++....
T Consensus 90 ~g~v~a~lv~~~~G-~~~D~~-----~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~-~~~g~~~~~~~~ 162 (421)
T 2ek8_A 90 NSDVTAELVYVGLG-TTADVA-----GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDG-KLNGTLGGSDAS 162 (421)
T ss_dssp CEEEEEEEEECTTC-CTTTTT-----TSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSS-CCCCBCSSCCTT
T ss_pred CCCcceEEEECCCC-ChhhcC-----CCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCc-ccccccCCCCCC
Confidence 34678888764332 111111 12357899999999999999999999999999999998643 222222333456
Q ss_pred eeeEEEeehhhhhhhhhhc
Q 018364 197 KVHAIFVSLETGVYLKEHA 215 (357)
Q Consensus 197 ~Ip~v~is~~~G~~L~~~l 215 (357)
.||++.|+.++++.|++.+
T Consensus 163 ~IP~~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 163 FVAAVGITKQEGDALAANL 181 (421)
T ss_dssp CCEEEEECHHHHHHHHHHH
T ss_pred CccEEEeCHHHHHHHHHHh
Confidence 8999999999999999877
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=8.1e-10 Score=93.53 Aligned_cols=51 Identities=20% Similarity=0.390 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..+...|+||++.+.+. .+++|||.||..||..|+......||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45567999999998875 4589999999999999998766569999998743
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.79 E-value=3e-09 Score=84.72 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=43.1
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..+...|+||++-|++. .++||||.|++.||..|+..+. +||+||..+..
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCS-BCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCC-CCCCCCCCCCh
Confidence 44567999999998875 5789999999999999999755 59999998865
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.77 E-value=4.8e-09 Score=80.97 Aligned_cols=50 Identities=10% Similarity=-0.064 Sum_probs=43.0
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..+...|+||++-|++. .+++|||.|++.||..|+..+. +||+||..+..
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCC-CCCCCcCCCCh
Confidence 34567999999998875 5789999999999999999865 59999998864
No 57
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.76 E-value=2.7e-08 Score=99.34 Aligned_cols=107 Identities=8% Similarity=-0.023 Sum_probs=75.6
Q ss_pred cccccccccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCC---------hHHH----HHHHHHcCCc
Q 018364 107 LPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCI---------FEDK----IRNAQAAGYR 173 (357)
Q Consensus 107 ~~a~Fg~~~~~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~Cs---------F~~K----~~~Aq~aGA~ 173 (357)
.+..+++..+..+++|+|+.....+.|.... ..+.++|||||+||.|. |..| +.+|+++||+
T Consensus 93 ~~l~~s~~tp~~~vta~lV~v~~~~~~~~~~-----~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~ 167 (444)
T 3iib_A 93 TALGGSIATPAQGLSATIVRFDTLQDLQNAE-----AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAV 167 (444)
T ss_dssp EECBTCCCCCTTCEEEEEEEESSHHHHHTSC-----TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EeccCCCCCCCCCeEEEEEecCCHHHHhhcc-----ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCe
Confidence 3344565556788999998876555554431 12357899999999995 6677 4579999999
Q ss_pred EEEEecccCccc---cc-ccccCCCcceeeEEEeehhhhhhhhhhcccC
Q 018364 174 AAIVYNDREKGS---LV-SMTASHEGVKVHAIFVSLETGVYLKEHARGE 218 (357)
Q Consensus 174 avIv~~~~~~~~---~~-~m~~~~~~i~Ip~v~is~~~G~~L~~~l~~~ 218 (357)
||||+|+..+.. .. .|...+....||++.|+.++|+.|+++++.+
T Consensus 168 avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g 216 (444)
T 3iib_A 168 GIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRD 216 (444)
T ss_dssp EEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTT
T ss_pred EEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCC
Confidence 999999754321 11 1211223468999999999999999887654
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.75 E-value=2.4e-09 Score=77.95 Aligned_cols=47 Identities=21% Similarity=0.534 Sum_probs=38.6
Q ss_pred CCcccccccccccCCCceEEe--CCCCc-cchhHHHHHHhcCCCCCCcccccCc
Q 018364 297 GGETCAICLEDYQDGEKLKVL--SCKHE-FHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~L--pC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
....|.||++...+. ..+ ||||. |+.+|+..|.+.+. .||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGA-SCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTC-BCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCC-cCCCcCchhh
Confidence 457999999986552 344 99998 99999999988765 5999999885
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.73 E-value=8.7e-09 Score=81.75 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=43.3
Q ss_pred CCCCcccccccccccCCCceEEeCCC-CccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCK-HEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~-H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..+...|+||++-|++. .+++|| |.|++.||..|+..+. +||+||..+...
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~-~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCC-CCCCCCCCCChh
Confidence 34567999999998875 568999 9999999999999865 599999988653
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=2.8e-09 Score=87.04 Aligned_cols=45 Identities=29% Similarity=0.584 Sum_probs=38.5
Q ss_pred CcccccccccccCCCceEEe-CCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+||++.|.+. ..+ +|||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 57999999999764 455 9999999999999998 359999998854
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.71 E-value=3.3e-09 Score=100.93 Aligned_cols=55 Identities=25% Similarity=0.634 Sum_probs=42.8
Q ss_pred CCCCcccccccccccCCCce-----EEeCCCCccchhHHHHHHhcCC----------CCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKL-----KVLSCKHEFHASCVDSWLTKWG----------TFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~v-----r~LpC~H~FH~~CI~~Wl~~~~----------~~CPlCR~~i~~~ 349 (357)
.....+|+||++.+.+++.+ .-.+|+|.||..||.+||++.. ..||.||++|..+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 34677999999999884332 2346999999999999998731 2599999998754
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.68 E-value=5.5e-09 Score=78.42 Aligned_cols=43 Identities=21% Similarity=0.592 Sum_probs=36.6
Q ss_pred CcccccccccccCCCceEEeCCCCc-cchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+||++.+.+ ...+||||. |+..|+..| . .||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----D-KCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----S-BCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----c-cCCCcCcCccC
Confidence 4689999998765 467899999 999999998 3 59999998864
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.65 E-value=8.8e-09 Score=89.47 Aligned_cols=52 Identities=25% Similarity=0.515 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..+...|+||++.|.+. .+++|||.|+..||..|+...+..||+||..+..+
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45567999999998864 45899999999999999988654699999988654
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=1.2e-08 Score=94.73 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=43.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
......|+||++-|.+. .++||||.|++.||..|+..+..+||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 44567999999998875 5789999999999999999865569999998864
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=3.4e-08 Score=72.97 Aligned_cols=46 Identities=22% Similarity=0.707 Sum_probs=37.2
Q ss_pred CCCCcccccccccccCCCceEEeCCCCc-cchhHHHHHHhcCCCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..+...|.||++...+ +..+||+|. |+..|+.. .+ .||+||+.|..
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~-~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQ-QCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CS-SCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CC-CCCCCCcchhc
Confidence 4456799999998654 578899999 99999984 23 59999998865
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=1.2e-08 Score=79.99 Aligned_cols=49 Identities=22% Similarity=0.670 Sum_probs=40.8
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC-------CCCCCc--cccc
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-------GTFCPV--CKHD 345 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-------~~~CPl--CR~~ 345 (357)
+..+|+||++++...+.++.++|+|.|+.+|+..++... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 457899999999877666666899999999999998752 236999 9987
No 67
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=2.8e-08 Score=78.06 Aligned_cols=47 Identities=23% Similarity=0.579 Sum_probs=38.7
Q ss_pred CCCcccccccccccCCCceEEeC-CCCccchhHHHHHHhcC-----CCCCCc--cccc
Q 018364 296 HGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKW-----GTFCPV--CKHD 345 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~-----~~~CPl--CR~~ 345 (357)
.....|+||++.|++. .++| |||.|++.||..|+..+ ..+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4467999999998864 4575 99999999999999875 246999 9865
No 68
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=3.4e-08 Score=74.18 Aligned_cols=44 Identities=20% Similarity=0.585 Sum_probs=35.6
Q ss_pred CcccccccccccCCCceEEeCCCCc-cchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..+|+||++.+.+ ...+||||. |+..|+.. .. .||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~-~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VD-KCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CS-BCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CC-CCccCCceecCc
Confidence 4689999999765 356899999 99999964 23 599999988653
No 69
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.49 E-value=5.9e-08 Score=85.10 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=43.1
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..+...|+||++-|.+. .++||||.|.+.||..|+..+..+||+||.++..
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45567999999998874 4679999999999999999864469999998864
No 70
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.40 E-value=3.8e-07 Score=95.72 Aligned_cols=99 Identities=16% Similarity=0.077 Sum_probs=68.2
Q ss_pred CCCCeEEEEeeCCCCCCCCCCCCC---CCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcc--------
Q 018364 116 NSSGTCGALHVADPADACSPLSNP---VASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKG-------- 184 (357)
Q Consensus 116 ~~~~~~g~l~~~~p~~aC~~~~~~---~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~-------- 184 (357)
+.+.++|.|+++. .||.. +.. .....+..++||||+||+|+|.+|+++||++||+|||||+|..+.
T Consensus 123 ~~G~v~g~lV~v~--~G~~~-Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~y 199 (707)
T 3fed_A 123 AQGMPEGDLVYVN--YARTE-DFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPY 199 (707)
T ss_dssp CCBCCEECEEECT--TCCHH-HHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBT
T ss_pred CCCceEEEEEEec--CCchh-hHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccC
Confidence 3456788988874 35521 110 000123578999999999999999999999999999999973210
Q ss_pred -------------cccc-c--ccCC--------------------CcceeeEEEeehhhhhhhhhhccc
Q 018364 185 -------------SLVS-M--TASH--------------------EGVKVHAIFVSLETGVYLKEHARG 217 (357)
Q Consensus 185 -------------~~~~-m--~~~~--------------------~~i~Ip~v~is~~~G~~L~~~l~~ 217 (357)
..+. + .+|+ ....||++-|+.++|+.|++.+.+
T Consensus 200 P~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 200 PKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TTSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 0000 0 0111 125899999999999999998754
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.35 E-value=1.2e-07 Score=72.13 Aligned_cols=43 Identities=26% Similarity=0.658 Sum_probs=35.8
Q ss_pred CcccccccccccCCCceEEeCCCCc-cchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|.||++.+.+ ...+||||. |+..|+..| . .||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----Q-SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----S-BCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----C-cCCCCCchhhC
Confidence 4689999998655 577899999 999999876 2 59999998854
No 72
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.32 E-value=6.8e-07 Score=92.87 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccc--------
Q 018364 117 SSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVS-------- 188 (357)
Q Consensus 117 ~~~~~g~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~~-------- 188 (357)
...+.|.|+++. .|+.. +..... .+.+++||||+||+|+|.+|+++|+++||+|||||++..+...+.
T Consensus 105 ~g~v~g~lV~vg--~G~~~-D~~~l~-vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~ 180 (640)
T 3kas_A 105 AATVTGKLVHAN--FGTKK-DFEDLY-TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGH 180 (640)
T ss_dssp CEEEEECEEECT--TCCHH-HHHTCS-SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEE
T ss_pred CCceEEEEEEec--CCChh-hHHHhh-cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccc
Confidence 345678887763 34422 111110 245789999999999999999999999999999999864321100
Q ss_pred --c-ccC-------------------CCcceeeEEEeehhhhhhhhhhcc
Q 018364 189 --M-TAS-------------------HEGVKVHAIFVSLETGVYLKEHAR 216 (357)
Q Consensus 189 --m-~~~-------------------~~~i~Ip~v~is~~~G~~L~~~l~ 216 (357)
. .++ .....||++-|+.++++.|++.+.
T Consensus 181 ~~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 181 AHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 0 011 012479999999999999998764
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.20 E-value=4.8e-07 Score=65.31 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=40.3
Q ss_pred CcccccccccccCCCceEEe-CCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+||++-+++. .++ +|||+|-++||++|++.+++ ||+++.++...
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~-cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSB-CTTTCCBCCGG
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCC-CcCCcCCCChh
Confidence 35899999999854 456 89999999999999998775 99999988643
No 74
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.18 E-value=3.9e-07 Score=87.88 Aligned_cols=44 Identities=23% Similarity=0.682 Sum_probs=37.2
Q ss_pred CCcccccccccccCCCceEEeCCCCc-cchhHHHHHHhcCCCCCCcccccCcC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
+...|+||++.+.. ...|||||. ||..|+..| . .||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~-~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----R-KCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----S-BCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----C-cCCCCCCCccC
Confidence 45799999999865 467899999 999999988 3 59999998864
No 75
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.12 E-value=8.1e-07 Score=81.85 Aligned_cols=51 Identities=24% Similarity=0.493 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC-CCCCCc--ccccCcC
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-GTFCPV--CKHDMRN 348 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPl--CR~~i~~ 348 (357)
.....|+||++-|++ .|+.+.|||.|++.||..|+..+ ...||+ ||+.+..
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 345699999999866 57767999999999999999874 336999 9987654
No 76
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.09 E-value=2.1e-06 Score=67.28 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=38.7
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
-|.+|--.+.. ..|.+||+|+|+.+|+..|..+....||+|+.+|..
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47777666554 679999999999999999987765579999998854
No 77
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=97.90 E-value=1e-05 Score=84.31 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=66.6
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccccccCCCcceeeEEE
Q 018364 123 ALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIF 202 (357)
Q Consensus 123 ~l~~~~p~~aC~~~~~~~~~~~~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~ 202 (357)
.|+++...+.|.+...+... .+..++|+|++||.|.|.+|..+++++||.++|++|+.. . +.. ....+|+++
T Consensus 260 plv~~~~~~~C~~~~l~~~~-vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~--~---~~~--~~~~~P~~~ 331 (649)
T 3i6s_A 260 PVIYNKTLSDCSSEELLSQV-ENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPG--V---FRS--ATFPNPGVV 331 (649)
T ss_dssp EEECCTTTTTCCCHHHHTTS-SSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGG--G---GGC--CCCCSCEEE
T ss_pred eeEecccccccccccccccc-cccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcc--c---ccc--ccCcCCEEE
Confidence 45555566789875322211 112789999999999999999999999999999999752 1 111 224789999
Q ss_pred eehhhhhhhhhhcccC
Q 018364 203 VSLETGVYLKEHARGE 218 (357)
Q Consensus 203 is~~~G~~L~~~l~~~ 218 (357)
|+.++|+.|+++++..
T Consensus 332 v~~~~g~~i~~yi~s~ 347 (649)
T 3i6s_A 332 VNKKEGKQVINYVKNS 347 (649)
T ss_dssp ECHHHHHHHHHHHHTC
T ss_pred EcHHHHHHHHHHHhcC
Confidence 9999999999988654
No 78
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.83 E-value=3.5e-05 Score=76.55 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=56.7
Q ss_pred CCcceEEEEEcCCC-----ChHHHHHHHHHcCCcEEEEecccCcccccc--cccCCCcceeeEEEeehhhhhhhhhhccc
Q 018364 145 ADHINFVLIVRGQC-----IFEDKIRNAQAAGYRAAIVYNDREKGSLVS--MTASHEGVKVHAIFVSLETGVYLKEHARG 217 (357)
Q Consensus 145 ~~~~~I~LV~RG~C-----sF~~K~~~Aq~aGA~avIv~~~~~~~~~~~--m~~~~~~i~Ip~v~is~~~G~~L~~~l~~ 217 (357)
..+++|+|++||.| .|.+|+.+++++||+++|||||.+...... .........||+++|+.++|+.|++++..
T Consensus 271 ~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~ 350 (441)
T 1y9z_A 271 NMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQ 350 (441)
T ss_dssp CCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTS
T ss_pred CccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcC
Confidence 35789999999987 899999999999999999999864322110 11122335899999999999999987744
No 79
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.69 E-value=1.9e-05 Score=72.22 Aligned_cols=51 Identities=22% Similarity=0.554 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCC-CCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG-TFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~ 349 (357)
....|.||.+-...|..+. .|+|.||..|++.|++.++ ..||.|+...+..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4679999999999874433 3999999999999998753 4699999987554
No 80
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.67 E-value=6e-05 Score=81.62 Aligned_cols=66 Identities=30% Similarity=0.498 Sum_probs=54.5
Q ss_pred CCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccccccCCCcceeeEEEeehhhhhhhhh
Q 018364 145 ADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKE 213 (357)
Q Consensus 145 ~~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~is~~~G~~L~~ 213 (357)
...++|+|++||.|+|.+|+.+++++||.++|+||+..+...+.+. ....||+++|+.++|+.|+.
T Consensus 278 ~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~---~~~~iP~~~i~~~~g~~l~~ 343 (926)
T 1xf1_A 278 DVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELP---NVDQMPAAFISRKDGLLLKD 343 (926)
T ss_dssp TCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECC---CSTTCCEEEECHHHHHHHHH
T ss_pred hcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccC---ccccccEEEEeHHHHHHHHh
Confidence 3578999999999999999999999999999999986543333221 23579999999999998874
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.95 E-value=0.049 Score=39.38 Aligned_cols=50 Identities=26% Similarity=0.524 Sum_probs=35.2
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC---CCCCCcccccCc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i~ 347 (357)
......|.||-+ .++.|.--.|...||..|+++-|... .=.||.|+.+..
T Consensus 9 ~~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 9 LAPGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CCTTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 344568999974 34444333589999999999887763 226999986543
No 82
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.93 E-value=0.053 Score=42.06 Aligned_cols=34 Identities=15% Similarity=0.444 Sum_probs=26.7
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHH
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSW 331 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~W 331 (357)
...|.||+++|...-...-++|+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4689999988644433445899999999999983
No 83
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.83 E-value=0.062 Score=41.36 Aligned_cols=50 Identities=22% Similarity=0.563 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCCceEEeCC-CCccchhHHHHHHhcCCCCCCcccccCcCCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSC-KHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC-~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (357)
......|-.|+-+.+. .+.| .|.++..|+..-|.... .||+|+++++.+-
T Consensus 25 ~~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~Sd-rCpIC~~pLPtkl 75 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSN-RCPICKMPLPTKL 75 (99)
T ss_dssp CSCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSS-EETTTTEECCCCS
T ss_pred ccCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhcc-CCcccCCcCCcce
Confidence 5567899999988664 4567 69999999999888866 5999999987653
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.68 E-value=0.14 Score=37.71 Aligned_cols=54 Identities=19% Similarity=0.401 Sum_probs=35.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc---CCCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~i~~ 348 (357)
..+...|.||-.....+..|.-=-|.--||..|+..-... ..-.||.|+..+..
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3445679999887543223332348999999999764433 23469999876643
No 85
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.33 E-value=0.18 Score=35.79 Aligned_cols=50 Identities=26% Similarity=0.475 Sum_probs=34.7
Q ss_pred CCCcccccccccccCCC-ceEEeCCCCccchhHHHHHHh----cCCCCCCccccc
Q 018364 296 HGGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLT----KWGTFCPVCKHD 345 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 345 (357)
.+...|+||...+.+++ .|.--.|..-||..|+..-.. .....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45678999999886543 344345899999999864322 134579999763
No 86
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.62 E-value=0.51 Score=35.54 Aligned_cols=36 Identities=19% Similarity=0.520 Sum_probs=24.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHH
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSW 331 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~W 331 (357)
...++.|.||- -|..++...-=-|+-+||..|+++=
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 44678999994 4444442222237999999999984
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.57 E-value=0.22 Score=39.44 Aligned_cols=49 Identities=29% Similarity=0.601 Sum_probs=33.1
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc---CCCCCCccc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCK 343 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR 343 (357)
...++.|.||.+.-+..+.|.--.|...||..|++..+.. ..-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567899999886433333444568999999999887653 222466664
No 88
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.87 E-value=0.58 Score=37.13 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=31.0
Q ss_pred CCCcccccccccc------cCCCceEEeCCCCccchhHHHH------HHhcCCCCCCccc
Q 018364 296 HGGETCAICLEDY------QDGEKLKVLSCKHEFHASCVDS------WLTKWGTFCPVCK 343 (357)
Q Consensus 296 ~~~~~CaICLe~f------~~~~~vr~LpC~H~FH~~CI~~------Wl~~~~~~CPlCR 343 (357)
.....|.+|+..- +.++-|.--.|+..||..|++. -+...+-.||.|+
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3467899999863 2234444456999999999953 2333333477774
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.76 E-value=0.39 Score=33.86 Aligned_cols=47 Identities=26% Similarity=0.638 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc---CCCCCCcccc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKH 344 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~ 344 (357)
......|.||-+. ++.+.--.|...||..|+++=+.. ..-.||.|+.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4456799999863 443333358889999999975443 1236999975
No 90
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=85.62 E-value=0.2 Score=43.55 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=34.3
Q ss_pred CcccccccccccCCC----ceEEeCCCCccchhHHHH------HHh----cCCCCCCcccccC
Q 018364 298 GETCAICLEDYQDGE----KLKVLSCKHEFHASCVDS------WLT----KWGTFCPVCKHDM 346 (357)
Q Consensus 298 ~~~CaICLe~f~~~~----~vr~LpC~H~FH~~CI~~------Wl~----~~~~~CPlCR~~i 346 (357)
+..|+||...|.+++ -|.---|.+-||..|+.. =+. .....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 467999999999886 233335899999999642 111 1245799998653
No 91
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=84.13 E-value=1 Score=46.28 Aligned_cols=60 Identities=5% Similarity=-0.082 Sum_probs=47.5
Q ss_pred CcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccccccCCCcceeeEEEeehhhhhhhhhhcc
Q 018364 146 DHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHAR 216 (357)
Q Consensus 146 ~~~~I~LV~RG~CsF~~K~~~Aq~aGA~avIv~~~~~~~~~~~m~~~~~~i~Ip~v~is~~~G~~L~~~l~ 216 (357)
..++|+|.+| .|..|..+++.+||.++|++++..+. .....+|.+.++.++|..++.++.
T Consensus 280 v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~--------~~~~~lP~~~v~~~~g~~i~~~~~ 339 (621)
T 3vta_A 280 LKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDY--------ADSYPLPSSVLDPNDLLATLRYIY 339 (621)
T ss_dssp TTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSS--------CCCCSSSEEEECHHHHHHHHHHHH
T ss_pred ccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCc--------ccccccceEEECHHHHHHHHHHHh
Confidence 4689999865 46788999999999999999975421 123478999999999999987654
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.58 E-value=0.6 Score=35.60 Aligned_cols=50 Identities=20% Similarity=0.419 Sum_probs=33.7
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC---CCCCCcccccCc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i~ 347 (357)
....+.|.+|.+. ++-+.--.|.-.||..|+++=+... .-.||.|+..-.
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 4557799999864 4433333478899999998755441 225999986543
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.70 E-value=0.39 Score=33.89 Aligned_cols=49 Identities=29% Similarity=0.622 Sum_probs=32.4
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC---CCCCCcccccC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDM 346 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i 346 (357)
......|.||-+ .++.|.--.|...||..|+++=+... .-.||.|+...
T Consensus 6 d~~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 445678999975 24433333488899999998644431 22599997643
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.81 E-value=0.19 Score=34.84 Aligned_cols=47 Identities=26% Similarity=0.646 Sum_probs=31.8
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC---CCCCCcccc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKH 344 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~ 344 (357)
......|.||-+. ++.|.--.|...||..|+++=+... .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4557789999874 4444433588999999998644331 225888864
No 95
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.70 E-value=0.54 Score=31.64 Aligned_cols=45 Identities=24% Similarity=0.594 Sum_probs=29.5
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhcC---CCCCCcccc
Q 018364 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKH 344 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~ 344 (357)
.|.||.+.-..++.|.--.|...||..|+++=+... .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898764444434333589999999997633331 225999964
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=81.25 E-value=0.24 Score=35.31 Aligned_cols=52 Identities=21% Similarity=0.529 Sum_probs=34.1
Q ss_pred CCCcccccccccccC--CCceEEeCCCCccchhHHHHHHhc------CCCCCCcccccCc
Q 018364 296 HGGETCAICLEDYQD--GEKLKVLSCKHEFHASCVDSWLTK------WGTFCPVCKHDMR 347 (357)
Q Consensus 296 ~~~~~CaICLe~f~~--~~~vr~LpC~H~FH~~CI~~Wl~~------~~~~CPlCR~~i~ 347 (357)
.+...|.||...... ++.|.---|.-.||..|+.+=+.. ..=.||.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 457899999987543 322322348999999998864321 2335999976543
No 97
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.69 E-value=0.79 Score=33.61 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=32.0
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHH------H--hcCCCCCCcccccC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSW------L--TKWGTFCPVCKHDM 346 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~W------l--~~~~~~CPlCR~~i 346 (357)
...| ||-..+..+..|.---|..-||..|+.-- + ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4567 89888764444444458999999998421 1 12355799998644
No 98
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=77.88 E-value=0.76 Score=39.59 Aligned_cols=47 Identities=32% Similarity=0.631 Sum_probs=32.5
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC---CCCCCcccccC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDM 346 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i 346 (357)
.++.|.+|-+. |+-+.-=.|...||..|+++-+... .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35789999743 5533333488999999998766542 23599998654
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=77.79 E-value=0.2 Score=35.23 Aligned_cols=50 Identities=26% Similarity=0.646 Sum_probs=33.8
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC---CCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i~~~ 349 (357)
.++.|.||-+. ++.|.--.|...||..|+++=+... .-.||.|+.....+
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 46789999874 4444433588999999998644431 22599997655443
No 100
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.07 E-value=0.49 Score=35.13 Aligned_cols=48 Identities=27% Similarity=0.583 Sum_probs=30.4
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhc---C-CCCCCccccc
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---W-GTFCPVCKHD 345 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~-~~~CPlCR~~ 345 (357)
...|.||...-..++.|.-=.|...||..|+++=|.. . .=.||.|+.+
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccCc
Confidence 3478999875334433322248999999999854333 1 2259999753
No 101
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=76.76 E-value=0.76 Score=36.57 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=23.5
Q ss_pred cccccccccccC-------CCceEEeCCCCccchhHHHHH
Q 018364 299 ETCAICLEDYQD-------GEKLKVLSCKHEFHASCVDSW 331 (357)
Q Consensus 299 ~~CaICLe~f~~-------~~~vr~LpC~H~FH~~CI~~W 331 (357)
+.|.||+..-.. ++.+.-..|+..||..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 579999986421 233444468999999999754
No 102
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=74.47 E-value=0.85 Score=40.11 Aligned_cols=49 Identities=24% Similarity=0.528 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcC---CCCCCcccccC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDM 346 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i 346 (357)
....+.|.+|-.. |+-+.-=.|...||..|+++-+... .-.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456789999743 3322222388999999998765542 23599998643
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=74.45 E-value=2.5 Score=35.03 Aligned_cols=47 Identities=23% Similarity=0.469 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHh----------cCCCCCCcccc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLT----------KWGTFCPVCKH 344 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~----------~~~~~CPlCR~ 344 (357)
...++.|.+|-+- |+-+--=.|-..||..||++=+. ...=.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4457899999863 44333335899999999997653 12235999974
No 104
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.23 E-value=1.1 Score=34.77 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhc--CCCCCCcccc
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK--WGTFCPVCKH 344 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~--~~~~CPlCR~ 344 (357)
+...| ||-.....+..|.-=.|.-.||..|+..=+.. ..-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 89877666654444459999999998752222 1346999974
No 105
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=73.77 E-value=0.6 Score=36.71 Aligned_cols=50 Identities=22% Similarity=0.438 Sum_probs=33.6
Q ss_pred CcccccccccccCCCceEEe--CCCCccchhHHHHH------H---hcCCCCCCcccccCc
Q 018364 298 GETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSW------L---TKWGTFCPVCKHDMR 347 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~L--pC~H~FH~~CI~~W------l---~~~~~~CPlCR~~i~ 347 (357)
...|.||...|.+.+...+- .|..-||.+|+.-= + ...+..||.|+..-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46799999998766544333 48889999997521 1 012346999976543
No 106
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=73.34 E-value=0.62 Score=33.82 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=27.6
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhcC----CCCCCccccc
Q 018364 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW----GTFCPVCKHD 345 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~----~~~CPlCR~~ 345 (357)
.|.||...-..++.|.-=.|...||..|+++=|... .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 567777543233222222388999999998544331 2259999753
No 107
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.29 E-value=3.2 Score=29.77 Aligned_cols=42 Identities=21% Similarity=0.454 Sum_probs=32.5
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
....|+.|-+.+..++.|. .-+..||.+| ..|-.|+..|...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~C---------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFC---------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTT---------CBCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCC---------CCCCCCCCccCCC
Confidence 3578999999988777554 4578999999 3488998888643
No 108
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.17 E-value=2.8 Score=30.89 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=32.6
Q ss_pred CCCcccccccccccCC-CceEEeCCCCccchhHHHHHHh----cCCCCCCcccccC
Q 018364 296 HGGETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLT----KWGTFCPVCKHDM 346 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~----~~~~~CPlCR~~i 346 (357)
.....| ||-..+..+ ..|.---|..-||..|+.---. .....||.|+..-
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345567 999887633 3444445999999999852111 1345699998654
No 109
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.72 E-value=0.84 Score=32.61 Aligned_cols=47 Identities=26% Similarity=0.599 Sum_probs=31.9
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc---CCCCCCccccc
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHD 345 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~ 345 (357)
..++.|.||-+. ++.|.--.|...||..|+.+=+.. ..-.||.|+..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456799999863 443433358899999999864433 12259999654
No 110
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.72 E-value=2.7 Score=32.16 Aligned_cols=47 Identities=32% Similarity=0.667 Sum_probs=29.4
Q ss_pred CCCcccccccccccCCCceEEeC--CC-CccchhHHHHHHhc---CCCCCCcccccC
Q 018364 296 HGGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTK---WGTFCPVCKHDM 346 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~---~~~~CPlCR~~i 346 (357)
.+...| ||-.... ++.|.-=- |. .-||..|+. |.. .+-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345677 9987643 44333223 55 679999997 333 234699997643
No 111
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=70.39 E-value=1.9 Score=31.02 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=6.6
Q ss_pred cccccccccccCC
Q 018364 299 ETCAICLEDYQDG 311 (357)
Q Consensus 299 ~~CaICLe~f~~~ 311 (357)
..|..|-..+..+
T Consensus 28 F~C~~C~~~L~~~ 40 (76)
T 1iml_A 28 LKCEKCGKTLTSG 40 (76)
T ss_dssp CBCTTTCCBCCTT
T ss_pred CCccccCccCCCC
Confidence 4555555554443
No 112
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.23 E-value=3.4 Score=30.34 Aligned_cols=43 Identities=33% Similarity=0.602 Sum_probs=31.6
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.....|+-|-+.+..++.+. .-+..||.+|+ .|-.|+..|...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF---------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--VNGHFFHRSCF---------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC---------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccceEEE--ECCCeeCCCcC---------EEcCCCCCcCCC
Confidence 44678999999987777654 35789999993 477777766543
No 113
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=70.17 E-value=1.7 Score=29.43 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=28.5
Q ss_pred ccccccccccCCCc-eEEe-CCCCccchhHHHHH---HhcCCCCCCccc
Q 018364 300 TCAICLEDYQDGEK-LKVL-SCKHEFHASCVDSW---LTKWGTFCPVCK 343 (357)
Q Consensus 300 ~CaICLe~f~~~~~-vr~L-pC~H~FH~~CI~~W---l~~~~~~CPlCR 343 (357)
.|.+|...+.+++. |.-- .|..-||..|+.-- ....+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57789888865543 3333 48889999997521 122456799996
No 114
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.52 E-value=0.78 Score=34.82 Aligned_cols=54 Identities=20% Similarity=0.513 Sum_probs=34.4
Q ss_pred CCcccccccccccCC-CceEEe-CCCCccchhHHHHHHhc-------CCCCCCcccccCcCCC
Q 018364 297 GGETCAICLEDYQDG-EKLKVL-SCKHEFHASCVDSWLTK-------WGTFCPVCKHDMRNNS 350 (357)
Q Consensus 297 ~~~~CaICLe~f~~~-~~vr~L-pC~H~FH~~CI~~Wl~~-------~~~~CPlCR~~i~~~~ 350 (357)
....|.||...-... +.+..- -|...||..|+++=|.. ..=.||.|+.......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 356899999764432 222222 48999999999875542 1235999976554433
No 115
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.94 E-value=1.4 Score=37.43 Aligned_cols=49 Identities=20% Similarity=0.475 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCC-ceEEeCCCCccchhHHHHHHh----cCCCCCCccccc
Q 018364 296 HGGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLT----KWGTFCPVCKHD 345 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 345 (357)
.....| +|-..+.++. -|.---|...||..|+..--. .....||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 346789 9998876443 333335899999999853211 224569999753
No 116
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=67.45 E-value=1.4 Score=39.42 Aligned_cols=48 Identities=27% Similarity=0.621 Sum_probs=27.2
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcC----CCCCCccccc
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW----GTFCPVCKHD 345 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~----~~~CPlCR~~ 345 (357)
...|.+|-..=..++.+.-=-|...||..|+++=|... .=.||.|+.+
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 34789998753334333333489999999999544331 2259999753
No 117
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.43 E-value=3.9 Score=29.91 Aligned_cols=40 Identities=30% Similarity=0.671 Sum_probs=31.5
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
....|+-|-+.+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc---------CCcCcCCCCcC
Confidence 45789999999887776654 478999999 35888988775
No 118
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.32 E-value=0.59 Score=35.84 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=33.1
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhc---CCCCCCccccc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHD 345 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~ 345 (357)
..+...|.||...-..++.|.-=-|...||..|+++=|.. ..=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4456689999887543333333348999999999853332 12259999764
No 119
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.23 E-value=1.7 Score=34.38 Aligned_cols=45 Identities=31% Similarity=0.667 Sum_probs=29.3
Q ss_pred ccccccccccC-CCceEEeCCCCccchhHHHHHHhcC---CCCCCcccc
Q 018364 300 TCAICLEDYQD-GEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKH 344 (357)
Q Consensus 300 ~CaICLe~f~~-~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~ 344 (357)
.|.||.+.-.+ ++.+.--.|...||..|+++=|..- .=.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 78999875323 3323222489999999998654441 225999974
No 120
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=67.19 E-value=3.9 Score=29.08 Aligned_cols=35 Identities=26% Similarity=0.573 Sum_probs=24.6
Q ss_pred CCCCcccccccccccCCCceEEe--CCCCccchhHHH
Q 018364 295 CHGGETCAICLEDYQDGEKLKVL--SCKHEFHASCVD 329 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~L--pC~H~FH~~CI~ 329 (357)
......|.+|...+..++....- .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 34567899999998776544333 589999999974
No 121
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=66.95 E-value=3.8 Score=29.69 Aligned_cols=47 Identities=32% Similarity=0.667 Sum_probs=28.9
Q ss_pred CCCcccccccccccCCCceEEeC--CC-CccchhHHHHHHhc---CCCCCCcccccC
Q 018364 296 HGGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTK---WGTFCPVCKHDM 346 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~---~~~~CPlCR~~i 346 (357)
.+...| ||-.... ++.|.-=- |. .-||..|+. |.. .+-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345677 8987542 44222223 55 689999997 333 234699997643
No 122
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.55 E-value=2 Score=31.63 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCCcccccccccccCCCceEEe--CCCCccchhHHHHHHh--------cCCCCCCcccccC
Q 018364 296 HGGETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSWLT--------KWGTFCPVCKHDM 346 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~L--pC~H~FH~~CI~~Wl~--------~~~~~CPlCR~~i 346 (357)
.....| ||-.....+..|.-= -|..-||..|+.-=-. ..+..||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345678 898875555555444 5999999999853211 1245799998643
No 123
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=65.24 E-value=0.91 Score=33.65 Aligned_cols=46 Identities=28% Similarity=0.700 Sum_probs=27.2
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhcC---C-CCCCccccc
Q 018364 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---G-TFCPVCKHD 345 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~-~~CPlCR~~ 345 (357)
.|.||-..-..++.|.-=.|...||..|+++=|... . =.||.|+.+
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 566776553333222222488999999999755441 1 269999863
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=61.82 E-value=0.56 Score=37.37 Aligned_cols=49 Identities=18% Similarity=0.477 Sum_probs=31.7
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhc---CCCCCCcccccCcC
Q 018364 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHDMRN 348 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~i~~ 348 (357)
.|.||-..-..++.|.--.|...||..|+++=|.. ..=.||.|+..+..
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 68889876444443333358999999999863333 12259999765543
No 125
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=60.21 E-value=1.8 Score=33.92 Aligned_cols=48 Identities=21% Similarity=0.516 Sum_probs=30.2
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhc---CCCCCCcccccCc
Q 018364 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHDMR 347 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~i~ 347 (357)
.|.+|-+.-.+...+.--.|...||..|+++=+.. ..-.||.|+.-..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 67788766433333333348999999999864433 1235999976443
No 126
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=59.48 E-value=7 Score=31.78 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=30.3
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHH------hc----CCCCCCcccc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWL------TK----WGTFCPVCKH 344 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl------~~----~~~~CPlCR~ 344 (357)
...++.|.||-+- |+-+--=.|-..||.+||++=+ .. ..=.|++|+.
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456789999863 3322222488999999999742 11 1235999964
No 127
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=58.76 E-value=1.8 Score=31.10 Aligned_cols=49 Identities=20% Similarity=0.486 Sum_probs=31.7
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHh--cCCCCCCcccc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLT--KWGTFCPVCKH 344 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~--~~~~~CPlCR~ 344 (357)
..+...| ||-..+..+..|.---|..-||..|+..--. .....||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3445678 9988766333444445899999999863211 12456999974
No 128
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=58.23 E-value=5.3 Score=42.98 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=41.6
Q ss_pred CCCCcccccccccccCCCceEEeCCC-CccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCK-HEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~-H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..+...|+|-++-+++. .++|-| |.|-+.+|..||..+. +||+=|.++..
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCCc
Confidence 44566899999998875 578987 5899999999999876 59999988864
No 129
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=57.73 E-value=2.3 Score=30.76 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCcccccccccccCCC-ceEEeCCCCccchhHHHHHHh---cCCCCCCccccc
Q 018364 297 GGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLT---KWGTFCPVCKHD 345 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 345 (357)
....| ||-..+..++ .|.--.|..-||..|+..--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 44578 7988776664 444445899999999864211 124579999764
No 130
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=56.79 E-value=6.8 Score=30.78 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=31.7
Q ss_pred CCCCcccccccccccCCCceEEe--CCCCccchhHHHHHHhcC---CCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSWLTKW---GTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~L--pC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i~~~ 349 (357)
...++.|.+|.+ .|+.|.-= .|...||..|+. |... .=.||.|+-.+..+
T Consensus 12 ~~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 445778999983 34422222 377899999998 4431 22488887655544
No 131
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.76 E-value=9.5 Score=26.63 Aligned_cols=41 Identities=24% Similarity=0.613 Sum_probs=28.9
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
....|+-|-+.+. ++.++ .-+..||.+|+ .|-.|+..|...
T Consensus 4 ~~~~C~~C~~~I~-~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIK--AMNNSWHPECF---------RCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEE--ETTEEECTTTS---------BCSSSCCBCSSS
T ss_pred CCCcCccCCCEec-ceEEE--ECcccccccCC---------EeCCCCCcCCCC
Confidence 3568999988876 34333 34788999983 488888877654
No 132
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.32 E-value=10 Score=27.44 Aligned_cols=42 Identities=17% Similarity=0.423 Sum_probs=29.5
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.....|+-|-+.+. ++.+ ..-+..||.+|+ .|-.|+..|...
T Consensus 13 ~~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPL--IFKNDPYHPDHF---------NCANCGKELTAD 54 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCC--CCSSSCCCTTTS---------BCSSSCCBCCTT
T ss_pred cCCCCCccCCCEec-ceEE--EECcceeCCCCC---------EeCCCCCccCCC
Confidence 34568999998877 4433 335788999883 488888777643
No 133
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=56.14 E-value=1.3 Score=31.69 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=27.8
Q ss_pred CcccccccccccCCCceEEe--CCCCccchhHHHHHH---hc----CCCCCCcccc
Q 018364 298 GETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSWL---TK----WGTFCPVCKH 344 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~L--pC~H~FH~~CI~~Wl---~~----~~~~CPlCR~ 344 (357)
...| ||-.....+..|.-= -|..-||..|+.--- .. .+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3467 897665555544322 288899999974210 00 1346999974
No 134
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.02 E-value=12 Score=27.00 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=31.2
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+.|-+.+..++.+ +..=+..||.+|+ .|-.|++.|...
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF---------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC---------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceE-EEECccccccccC---------chhhCCCccCCC
Confidence 46899999998876653 2334789999993 488888887654
No 135
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=55.28 E-value=4.1 Score=24.39 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=21.1
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHH
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCV 328 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI 328 (357)
.+.|+.|-...-..|++. .=|..||+.|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEE--ECCeEecccCC
Confidence 368999988876655443 34789999984
No 136
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=54.70 E-value=4.5 Score=29.38 Aligned_cols=41 Identities=24% Similarity=0.720 Sum_probs=29.3
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+.|-+.+..++.++ .-+..||.+|+ .|-.|++.|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--CDGRSFHRCCF---------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--ETTEEEESSSE---------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEE--eCCcccccccC---------ccCCCCCCCCCC
Confidence 568999999887776443 36788998883 477787777544
No 137
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=54.17 E-value=6.1 Score=27.33 Aligned_cols=39 Identities=18% Similarity=0.453 Sum_probs=29.3
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+-|-+.+. ++. +..=+..||.+| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNAMGKQWHVEH---------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE--ECCTTSBEETTT---------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE--EEECccccccCc---------CEECCCCCCCCC
Confidence 468999999887 443 334578999999 348899888764
No 138
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.03 E-value=13 Score=26.42 Aligned_cols=44 Identities=23% Similarity=0.542 Sum_probs=31.6
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.....|+-|-+.+...+.+. ..-+..||.+|+ .|-.|++.+...
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF---------~C~~C~~~L~~~ 52 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIV-NSNGELYHEQCF---------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCE-EETTEEECTTTC---------CCTTTCCCCGGG
T ss_pred CCCCCchhcCCccCCCceEE-EeCccEeccccC---------eECCCCCCCCCC
Confidence 34679999999987655442 234789999983 488888877654
No 139
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.01 E-value=10 Score=28.00 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=30.4
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
....|+-|-+.+. ++.+ ..-+..||.+|+ .|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEEF---------NCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTTC---------BCSSSCCBCSSS
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccCC---------ccCCCCCCCCCC
Confidence 4578999999885 4433 345899999993 588998888643
No 140
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.70 E-value=15 Score=25.60 Aligned_cols=42 Identities=19% Similarity=0.552 Sum_probs=29.9
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+-|-+.+..++.+ +..-+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHCF---------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTTC---------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccE-EEECccccCcccC---------eECCCCCcCCCC
Confidence 46899999988865433 3345789999883 488888877653
No 141
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.39 E-value=12 Score=26.06 Aligned_cols=42 Identities=17% Similarity=0.515 Sum_probs=29.7
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+.|-+.+..++.+ +..=+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRK-MEYKGSSWHETCF---------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCE-EEETTEEEETTTT---------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceE-EEECcCeecccCC---------cccccCCccCCC
Confidence 35899999988876533 2235788999883 488888877654
No 142
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.33 E-value=15 Score=25.71 Aligned_cols=40 Identities=28% Similarity=0.645 Sum_probs=26.2
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
...|+.|-+.+...+.+ +..=+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVALDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EECSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceE-EEECCCeEcccCC---------cccccCCcCC
Confidence 46788888877654322 2234678888882 4778877774
No 143
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=52.80 E-value=2.7 Score=29.30 Aligned_cols=44 Identities=36% Similarity=0.705 Sum_probs=27.5
Q ss_pred CCcccccccccccCCCceEEeC--CC-CccchhHHHHHHhcC---CCCCCcccc
Q 018364 297 GGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTKW---GTFCPVCKH 344 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~~---~~~CPlCR~ 344 (357)
+...| ||-+.. .|+.|.-=. |. .-||..|+. |... +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 35567 898764 344332223 55 689999998 3332 346999965
No 144
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.21 E-value=13 Score=27.58 Aligned_cols=42 Identities=31% Similarity=0.640 Sum_probs=29.3
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
....|+-|-+.+...+.+ ..-+..||.+|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISCF---------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTTC---------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCCC---------eeCCCCCCCCCC
Confidence 356899998888776644 456788898883 377777666543
No 145
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=52.18 E-value=11 Score=26.95 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=26.5
Q ss_pred CCCCcccccccccccCCCceEEeCC-CCccchhHHHHH
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSC-KHEFHASCVDSW 331 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC-~H~FH~~CI~~W 331 (357)
.++..-|.||.++ -.+|-+.| +-+|+..|..+=
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 4556789999998 34788899 889999997763
No 146
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.37 E-value=15 Score=25.71 Aligned_cols=41 Identities=22% Similarity=0.539 Sum_probs=29.4
Q ss_pred CcccccccccccC--CCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQD--GEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~--~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+-|-+.+.. ++.+ +..-+..||.+|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC---------EeccCCCcCCC
Confidence 5689999998875 3232 2346889999993 48888887754
No 147
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=50.82 E-value=2.9 Score=29.20 Aligned_cols=44 Identities=34% Similarity=0.693 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCceEEeC--CC-CccchhHHHHHHhc---CCCCCCcccc
Q 018364 297 GGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTK---WGTFCPVCKH 344 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~---~~~~CPlCR~ 344 (357)
+...| ||-.... ++.|.-=- |. .-||..|+. |.. .+-.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 35567 8987632 43222123 44 679999998 343 2346999964
No 148
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.38 E-value=9.3 Score=27.53 Aligned_cols=38 Identities=24% Similarity=0.523 Sum_probs=26.3
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..|+.|-+.+. ++.+ ..-+..||.+| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~~--~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--VAGEFKYHPEC---------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCB--CCTTCCBCTTS---------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEE--EECCceecccc---------CCccCCCCccCC
Confidence 47888888877 3333 23478888888 248888887754
No 149
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.72 E-value=12 Score=27.62 Aligned_cols=55 Identities=20% Similarity=0.432 Sum_probs=33.2
Q ss_pred CCCcccccccccccCCC-ceEEeCCCCccchhHHHHHHh-----cCCCCCCcccccCcCCC
Q 018364 296 HGGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLT-----KWGTFCPVCKHDMRNNS 350 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~-----~~~~~CPlCR~~i~~~~ 350 (357)
.+...|.+|-..|..-. +..--.||++|+..|...-+. .....|-.|-..+....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~~ 77 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRC 77 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC--
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHHhc
Confidence 34568999999997642 122224999999999764321 11124777766655443
No 150
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.23 E-value=22 Score=26.12 Aligned_cols=43 Identities=14% Similarity=0.360 Sum_probs=31.4
Q ss_pred CCCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
......|+-|-+.+.. +.+ ..-+..||.+| ..|-.|+..|...
T Consensus 22 ~~~~~~C~~C~~~I~~-~~~--~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVG-AVV--KARDKYRHPEC---------FVCADCNLNLKQK 64 (89)
T ss_dssp CCSCCBCTTTCCBCCS-CCE--ESSSCEECTTT---------CCCSSSCCCTTTS
T ss_pred CCcCCCcccCCCEecc-cEE--EECCceECccC---------CEecCCCCCCCCC
Confidence 3456789999998875 333 34678999999 3588898887653
No 151
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.85 E-value=15 Score=26.15 Aligned_cols=40 Identities=20% Similarity=0.527 Sum_probs=27.8
Q ss_pred CcccccccccccC--CCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 298 GETCAICLEDYQD--GEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 298 ~~~CaICLe~f~~--~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
...|+.|-+.+.. .+. .+..-+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK-FICFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCce-eEEECCcccCcccC---------ChhhCCCcCC
Confidence 4689999998875 222 23345789999993 4778877775
No 152
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=48.60 E-value=41 Score=25.41 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=36.4
Q ss_pred CCCcccccccccccCCC--ceEE--eCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 296 HGGETCAICLEDYQDGE--KLKV--LSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~--~vr~--LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
...+.|.||=++.-... .+.+ --|+--.++.|.+-=.+.-+..||-|+....
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34689999999853321 2222 2478889999988655554557999998885
No 153
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.08 E-value=13 Score=26.71 Aligned_cols=38 Identities=24% Similarity=0.635 Sum_probs=25.7
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..|+-|-+.+. ++.++ .-+..||.+|+ .|-.|++.|..
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS---------SCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC---------ccccCCCCCCC
Confidence 58999988877 44333 35788999883 36666666543
No 154
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.67 E-value=15 Score=25.41 Aligned_cols=39 Identities=18% Similarity=0.559 Sum_probs=27.5
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+-|-+.+.. +.++ .-+..||.+|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGIT--YQDQPWHADCF---------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT-TCEE--ETTEEECTTTT---------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc-ceEE--ECccccccCcC---------EECCCCCCCCC
Confidence 4688889888763 4433 35788998883 48888887753
No 155
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=46.44 E-value=15 Score=35.20 Aligned_cols=46 Identities=28% Similarity=0.441 Sum_probs=28.9
Q ss_pred ccccccccccCCCceEEeCCCCc--cchhHHHHHHhc-CCCCCCcccccCc
Q 018364 300 TCAICLEDYQDGEKLKVLSCKHE--FHASCVDSWLTK-WGTFCPVCKHDMR 347 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~--FH~~CI~~Wl~~-~~~~CPlCR~~i~ 347 (357)
.|+|-+..++. .+|-..|.|. |-.+=+-....+ ..-.||+|.+.+.
T Consensus 251 ~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 251 QCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp BCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred cCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 78887776554 6888899998 332222222222 2335999988774
No 156
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=44.38 E-value=16 Score=25.21 Aligned_cols=43 Identities=23% Similarity=0.575 Sum_probs=31.9
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
....|+-|-+.+..++.+.. .=+..||.+|+ .|-.|+..+...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC---------cccCCCCCCCCC
Confidence 35689999999887765422 35778999994 488888887654
No 157
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=44.38 E-value=16 Score=26.36 Aligned_cols=51 Identities=18% Similarity=0.426 Sum_probs=31.9
Q ss_pred CCCCcccccccccc-cCCCceEEe-CCCCccchhHHHHHHhc-CCCCCCccccc
Q 018364 295 CHGGETCAICLEDY-QDGEKLKVL-SCKHEFHASCVDSWLTK-WGTFCPVCKHD 345 (357)
Q Consensus 295 ~~~~~~CaICLe~f-~~~~~vr~L-pC~H~FH~~CI~~Wl~~-~~~~CPlCR~~ 345 (357)
....+.|.||.+.- .+++.+..- .|.-.||..|+.+=..- ..=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 45578999998764 222333222 48899999999853211 12259999653
No 158
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=43.22 E-value=18 Score=34.51 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=29.7
Q ss_pred ccccccccccCCCceEEeCCCCc--cchhHHHHHHhc-CCCCCCcccccCcC
Q 018364 300 TCAICLEDYQDGEKLKVLSCKHE--FHASCVDSWLTK-WGTFCPVCKHDMRN 348 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~--FH~~CI~~Wl~~-~~~~CPlCR~~i~~ 348 (357)
.|+|-+..++. .+|-..|.|. |-..=+-....+ ..-.||+|.+.+..
T Consensus 217 ~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 217 MCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp BCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 78887776655 5888899998 443322222222 23359999987753
No 159
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=43.18 E-value=13 Score=27.98 Aligned_cols=53 Identities=15% Similarity=0.364 Sum_probs=32.6
Q ss_pred CCCCccccccccccc-CCCceEE-eCCCCccchhHHHHHHhc-CCCCCCcccccCc
Q 018364 295 CHGGETCAICLEDYQ-DGEKLKV-LSCKHEFHASCVDSWLTK-WGTFCPVCKHDMR 347 (357)
Q Consensus 295 ~~~~~~CaICLe~f~-~~~~vr~-LpC~H~FH~~CI~~Wl~~-~~~~CPlCR~~i~ 347 (357)
..+...|.||.+.-. .++.+.. --|.-.||..|+.+=+.- ..=.||.|+....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 445689999987531 2222222 248889999999853211 1235999976543
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=41.74 E-value=15 Score=28.93 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=16.1
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhc
Q 018364 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK 334 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~ 334 (357)
..|..|-..+..++.... .=+..|+..|..+.+..
T Consensus 37 F~C~~C~~~L~~g~~f~~-~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLL-INSDIVCEQDIYEWTKI 71 (123)
T ss_dssp CBCTTTCCBCCTTCEEEE-CSSSEEEGGGHHHHHHH
T ss_pred CccccCCCCCCCCCcEEe-eCCEEEcHHHhHHHhcc
Confidence 355555555544433221 12455555555554433
No 161
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=41.53 E-value=4.2 Score=27.34 Aligned_cols=42 Identities=17% Similarity=0.450 Sum_probs=26.4
Q ss_pred cccccccCCCceEEeCCCCccchhHHHHHHh--cCCCCCCcccc
Q 018364 303 ICLEDYQDGEKLKVLSCKHEFHASCVDSWLT--KWGTFCPVCKH 344 (357)
Q Consensus 303 ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~--~~~~~CPlCR~ 344 (357)
||-.....+..|.--.|+.-||..|+.---. .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766655334444445899999999863221 13456999975
No 162
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.84 E-value=24 Score=24.34 Aligned_cols=39 Identities=18% Similarity=0.581 Sum_probs=28.0
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+-|-+.+.. +. +..-+..||.+|+ .|-.|+++|..
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VTYREQPWHKECF---------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EESSSSEEETTTS---------BCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ce--EEECccccCCCCC---------ccCCCCCcCCc
Confidence 4679999888764 33 3345789999883 48888887754
No 163
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.05 E-value=12 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=23.6
Q ss_pred CCCccccccccccc-C-CCceEEeCCCCccchhHH
Q 018364 296 HGGETCAICLEDYQ-D-GEKLKVLSCKHEFHASCV 328 (357)
Q Consensus 296 ~~~~~CaICLe~f~-~-~~~vr~LpC~H~FH~~CI 328 (357)
.+...|.+|...|. . +....-..|+|.++..|=
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 45789999999983 2 233444568999888873
No 164
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.76 E-value=24 Score=25.20 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=28.8
Q ss_pred CCCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
.....|+-|-+.+.. +. +..-+..||.+|+ .|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-VF--VKLRDRHRHPECY---------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCS-SC--EECSSCEECTTTT---------SCSSSCCCHH
T ss_pred CCCCccccCCCCccC-cE--EEECcceeCcCcC---------eeCCCCCCCC
Confidence 346799999998775 33 3345789999994 4777777664
No 165
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=39.05 E-value=5.9 Score=27.82 Aligned_cols=44 Identities=34% Similarity=0.654 Sum_probs=27.0
Q ss_pred CCcccccccccccCCCceEEeC--CC-CccchhHHHHHHhc---CCCCCCcccc
Q 018364 297 GGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTK---WGTFCPVCKH 344 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~---~~~~CPlCR~ 344 (357)
+...| ||-... .++.|.-=- |. .-||..|+. |.. .+-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 35567 898753 343332223 44 799999997 232 2346999975
No 166
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=38.28 E-value=17 Score=30.89 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=15.2
Q ss_pred CcccccccccccCCCceEEeCCCCccchhH
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASC 327 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~C 327 (357)
...|+.|-+.+..++.|. .=+..||.+|
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C 142 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--GAGKSWHKSC 142 (192)
T ss_dssp CEECTTTSCEECSSSCEE--ETTEEECTTT
T ss_pred CCcCCCCCCEecCcEEEe--cCCCccchhc
Confidence 445666666665554443 2355666655
No 167
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=38.13 E-value=23 Score=26.10 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=33.5
Q ss_pred CCCcccccccccccCCC-ceEEeCCCCccchhHHHHHHhc-------CCCCCCcccccCcC
Q 018364 296 HGGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLTK-------WGTFCPVCKHDMRN 348 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~~-------~~~~CPlCR~~i~~ 348 (357)
.+...|.+|-..|..-. +..--.||++|+.+|....... ....|-.|-..+..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 44679999999997643 1222248999999997653211 11247777655543
No 168
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.92 E-value=21 Score=25.17 Aligned_cols=41 Identities=22% Similarity=0.541 Sum_probs=29.7
Q ss_pred CcccccccccccC---C-CceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQD---G-EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~---~-~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+-|-+.+.. . +.++ .=+..||.+| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA--YEGQSWHDYC---------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE--ETTEEEETTT---------CBCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeEE--ECcceeCccc---------CEehhcCCCCCCC
Confidence 4689999998874 2 3333 3478999999 3589998888643
No 169
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=37.76 E-value=28 Score=25.99 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=24.3
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..|..|-..+.... . ...=+..|+..|..+ .....|..|.+.|.+
T Consensus 34 F~C~~C~~~L~~~~-~-~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANET-F-VAKDNKILCNKCTTR---EDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSSC-C-EEETTEEECHHHHTT---CCCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcCe-e-ECcCCEEEChhHhhh---hcCCccccCCCcccc
Confidence 46677766654321 1 112345565555432 333458888888864
No 170
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.70 E-value=23 Score=25.41 Aligned_cols=41 Identities=27% Similarity=0.580 Sum_probs=28.9
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
....|+-|-+.+.. +.+ ..-+..||.+|+ .|..|+..|...
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 14 TLEKCATCSQPILD-RIL--RAMGKAYHPGCF---------TCVVCHRGLDGI 54 (81)
T ss_dssp SCCBCTTTCCBCCS-CCE--EETTEEECTTTC---------BCSSSCCBCTTS
T ss_pred CCCccccCCCeecc-eeE--EECCccccHHhc---------CcccCCCccCCC
Confidence 35689999888773 333 335788999883 488898887643
No 171
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=37.46 E-value=66 Score=23.83 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=29.5
Q ss_pred CCCcccccccccccCCCceEEeC--CCCccchhHHHHHHhc
Q 018364 296 HGGETCAICLEDYQDGEKLKVLS--CKHEFHASCVDSWLTK 334 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~Lp--C~H~FH~~CI~~Wl~~ 334 (357)
...-.|.+|-|.+++.. ..+-| =+|.|+..|-+.-+++
T Consensus 13 ~a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 45669999999987754 33445 2899999999988877
No 172
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=36.30 E-value=16 Score=28.99 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=29.8
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
...|+-|-+.+.....++ .-+..||.+| ..|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEcccc---------cCcCcCCCccc
Confidence 568999999887553333 4688999999 35899988886
No 173
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.11 E-value=26 Score=24.87 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=28.0
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
...|+-|-+.+.. +.++ .-+..||.+| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~-~~v~--a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLS--AMDTVWHPEC---------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCEE--ETTEEECTTT---------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeEE--ECCCeEecCc---------CChhhCCCCCCCC
Confidence 3588888888775 3333 3467899888 2488888887653
No 174
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=36.08 E-value=19 Score=25.12 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=27.1
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcc
Q 018364 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (357)
..|--|...|.+....+--.|++.|+-+| |..+-..=..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 56999999986432233334999999999 22222211249988
No 175
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.45 E-value=20 Score=26.87 Aligned_cols=50 Identities=18% Similarity=0.433 Sum_probs=31.4
Q ss_pred CCcccccccccccCCC-ceEEeCCCCccchhHHHHHHh-----cCCCCCCcccccC
Q 018364 297 GGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLT-----KWGTFCPVCKHDM 346 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~-----~~~~~CPlCR~~i 346 (357)
+...|.+|...|..-. +..--.||++|+..|...... .....|-.|-..+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 3568999999997542 222335999999999764321 1122466665444
No 176
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=34.34 E-value=4.3 Score=25.15 Aligned_cols=16 Identities=19% Similarity=0.665 Sum_probs=11.0
Q ss_pred CcccccccccccCCCc
Q 018364 298 GETCAICLEDYQDGEK 313 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~ 313 (357)
...|+||+.++...+.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4678888887765443
No 177
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=33.09 E-value=35 Score=25.49 Aligned_cols=54 Identities=13% Similarity=0.269 Sum_probs=33.4
Q ss_pred CCCcccccccccccCCC-ceEEeCCCCccchhHHHHHHh------cCCCCCCcccccCcCC
Q 018364 296 HGGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLT------KWGTFCPVCKHDMRNN 349 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~------~~~~~CPlCR~~i~~~ 349 (357)
.+...|.+|-..|..-. +.---.||++|+..|....+. .....|-.|-..+...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 44568999999997642 122224899999999654221 1112477776655433
No 178
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.50 E-value=31 Score=24.64 Aligned_cols=41 Identities=22% Similarity=0.559 Sum_probs=27.6
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+-|-+.+..++.+ +..=+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRE-LFYEDRHFHEGCF---------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCB-CCCSSCCCBTTTS---------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEE-EEeCCccccccCC---------eecCCCCccCC
Confidence 35899998888743322 1124788999883 48888877754
No 179
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=32.44 E-value=30 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=22.8
Q ss_pred CcccccccccccCCC-ceEEeCCCCccchhHHH
Q 018364 298 GETCAICLEDYQDGE-KLKVLSCKHEFHASCVD 329 (357)
Q Consensus 298 ~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~ 329 (357)
+..|.+|-..|..-. +..--.||++|+.+|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999999987642 11222489999999964
No 180
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.40 E-value=27 Score=27.30 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=25.6
Q ss_pred ccccccccccC-CCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 300 TCAICLEDYQD-GEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 300 ~CaICLe~f~~-~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
.|..|-..+.+ +... ...=+..|+..|...-+.... .|-.|...|..
T Consensus 34 ~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~-~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSG-AGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCC-SSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCC-ccccCCCCcCc
Confidence 66666665542 1111 122355666777666444322 48888877764
No 181
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.28 E-value=12 Score=29.22 Aligned_cols=26 Identities=23% Similarity=0.602 Sum_probs=15.2
Q ss_pred CCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 318 SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 318 pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.||+.|. +. +.. ...||.|++.-.+.
T Consensus 72 ~CG~~F~----~~-~~k-PsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK----AE-INI-PSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC----CC-SSC-CSSCSSSCCCCBCC
T ss_pred hCcCeec----cc-CCC-CCCCcCCCCCccCC
Confidence 3889981 11 111 23599998865544
No 182
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.07 E-value=17 Score=23.76 Aligned_cols=11 Identities=18% Similarity=0.002 Sum_probs=4.6
Q ss_pred hhccccCCCCC
Q 018364 251 AVAFITPRPWR 261 (357)
Q Consensus 251 li~~~~~r~r~ 261 (357)
+++++.+|++.
T Consensus 29 ~~~~~~RRRr~ 39 (44)
T 2l2t_A 29 TFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHhhhhhh
Confidence 33444444433
No 183
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.63 E-value=23 Score=28.34 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCcccccccccccCCC-ceEEeCCCCccchhHHHH
Q 018364 297 GGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDS 330 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~ 330 (357)
+...|.+|-..|..-. +..--.||++|+..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3568999999997542 122225999999999543
No 184
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.41 E-value=31 Score=25.35 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=24.5
Q ss_pred CCCcccccccccccCCC-ceEEeCCCCccchhHHHH
Q 018364 296 HGGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDS 330 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~ 330 (357)
.+...|.+|-..|..-. +.---.||++|+..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34568999999996542 122224999999999653
No 185
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=31.07 E-value=13 Score=24.30 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=4.3
Q ss_pred hhccccCCCC
Q 018364 251 AVAFITPRPW 260 (357)
Q Consensus 251 li~~~~~r~r 260 (357)
+++++.+|++
T Consensus 30 ~~~~~~RRr~ 39 (44)
T 2ks1_B 30 GIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHhhhhH
Confidence 3344444443
No 186
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.98 E-value=37 Score=24.02 Aligned_cols=39 Identities=21% Similarity=0.561 Sum_probs=27.2
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
...|+-|-+.+.. +. +..=+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~~--v~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQ-GG--VTYRDQPWHRECL---------VCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCS-CC--EESSSSEECTTTC---------BCSSSCCBCTT
T ss_pred CCcCCCCCCEecC-cE--EEECCchhhhhhC---------CcccCCCcCCC
Confidence 3678888888765 32 3345788998883 48888887753
No 187
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=30.97 E-value=25 Score=24.05 Aligned_cols=40 Identities=15% Similarity=0.532 Sum_probs=28.9
Q ss_pred cccccccccccCC-CceEEeCCCCccc--hhHHHHHHhcCCCCCCcccccCcCC
Q 018364 299 ETCAICLEDYQDG-EKLKVLSCKHEFH--ASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 299 ~~CaICLe~f~~~-~~vr~LpC~H~FH--~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
..|+-|-+.+..+ +.++ .-+..|| .+|+ .|-.|+.+|...
T Consensus 3 ~~C~~C~~~I~~~~~~v~--a~~~~wH~~~~CF---------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT--YNNFSWHASTECF---------LCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEEE--ETTEEEETTTTTS---------BCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEEE--ECCCccCCCCCCE---------ECCCCCCcCCCC
Confidence 4789998888864 3333 3488999 9993 488888887543
No 188
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.43 E-value=15 Score=25.56 Aligned_cols=19 Identities=21% Similarity=0.739 Sum_probs=12.7
Q ss_pred HHhcCCCCCCcccccCcCC
Q 018364 331 WLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 331 Wl~~~~~~CPlCR~~i~~~ 349 (357)
|+..+...||.|+..|..+
T Consensus 1 wi~~~~k~CP~C~~~Iek~ 19 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKD 19 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSC
T ss_pred CccccceECcCCCCeeEeC
Confidence 4444444699999887654
No 189
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.31 E-value=27 Score=30.53 Aligned_cols=34 Identities=21% Similarity=0.529 Sum_probs=24.2
Q ss_pred CCcccccccccccCCC-ceEEeCCCCccchhHHHH
Q 018364 297 GGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDS 330 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~ 330 (357)
+...|.+|-..|..-. +..--.||++|+..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3579999999987542 122224999999999654
No 190
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.27 E-value=36 Score=26.24 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=12.2
Q ss_pred cccccccccccCCCceEEeCCCCccchhH
Q 018364 299 ETCAICLEDYQDGEKLKVLSCKHEFHASC 327 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~C 327 (357)
..|+-|-+.+...+.++ --+..||.+|
T Consensus 4 ~~C~~C~~~I~~~~~~~--a~~~~wH~~C 30 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLK--AIDQYWHEDC 30 (114)
T ss_dssp BCBSSSCSCBCSSEEEE--CSSSEECTTT
T ss_pred CCCcCCCCeeCCcEEEE--ECchhHHHhc
Confidence 34555555544332222 2345555555
No 191
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.51 E-value=38 Score=26.34 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=30.3
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
-..|..|-..+... . -...=+..|+..|-..-+ ...|+.|...|...
T Consensus 30 CF~C~~C~~~L~~~-~-f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 30 HFCCFDCDSILAGE-I-YVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDPE 76 (126)
T ss_dssp GSBCTTTCCBCTTS-E-EEEETTEEEEHHHHHHHS---CCBCTTTCSBCCTT
T ss_pred CCCcCCCCCCCCcC-E-EEeECCEEechHHhCcCc---CccCcccCCcCCcC
Confidence 45788887776542 1 122346677777766532 33699999998853
No 192
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.42 E-value=28 Score=30.66 Aligned_cols=54 Identities=17% Similarity=0.401 Sum_probs=33.4
Q ss_pred CCcccccccccccCCCc-eEEeCCCCccchhHHHHHHhc-------CCCCCCcccccCcCCC
Q 018364 297 GGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLTK-------WGTFCPVCKHDMRNNS 350 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~~-------~~~~CPlCR~~i~~~~ 350 (357)
+.+.|.+|-..|..-.. ..--.||++|+..|-...... ....|-.|-..+....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~~ 224 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKA 224 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC--
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhhc
Confidence 45699999999976421 222359999999996643211 1124777766655443
No 193
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.26 E-value=49 Score=23.21 Aligned_cols=38 Identities=21% Similarity=0.537 Sum_probs=21.7
Q ss_pred CcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCc
Q 018364 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (357)
Q Consensus 298 ~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (357)
...|+-|-+.+.. +.+ ..-+..||.+|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~v--~a~~~~wH~~CF---------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL--EAGEKHYHPSCA---------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CCB--CCSSCCBCTTTS---------CCSSSCCCCC
T ss_pred cCCcccCCCEecC-eeE--EeCCCCCCCCcC---------EeCCCCCCCC
Confidence 3467777776654 222 234677777772 3555555554
No 194
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=25.49 E-value=20 Score=25.55 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=7.2
Q ss_pred hHHHHhhhhccccCCC
Q 018364 244 IVVFALFAVAFITPRP 259 (357)
Q Consensus 244 lvi~~vlli~~~~~r~ 259 (357)
+++++.+.+|+++++.
T Consensus 20 lll~~glcI~ccvkcr 35 (70)
T 2klu_A 20 LLLFIGLGIFFSVRSR 35 (70)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhHHH
Confidence 3444444455455333
No 195
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=25.10 E-value=27 Score=26.96 Aligned_cols=13 Identities=23% Similarity=0.899 Sum_probs=11.4
Q ss_pred ccchhHHHHHHhc
Q 018364 322 EFHASCVDSWLTK 334 (357)
Q Consensus 322 ~FH~~CI~~Wl~~ 334 (357)
.||+.|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999876
No 196
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=24.98 E-value=27 Score=26.89 Aligned_cols=13 Identities=31% Similarity=1.040 Sum_probs=11.4
Q ss_pred ccchhHHHHHHhc
Q 018364 322 EFHASCVDSWLTK 334 (357)
Q Consensus 322 ~FH~~CI~~Wl~~ 334 (357)
.||+.|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
No 197
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.49 E-value=57 Score=26.91 Aligned_cols=40 Identities=23% Similarity=0.568 Sum_probs=26.4
Q ss_pred cccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 299 ~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
..|..|-+.+..++.+. ..-++.||.+|. .|-.|+..|..
T Consensus 66 ~~C~~C~~~I~~~~~v~-~a~~~~~H~~CF---------~C~~C~~~L~~ 105 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVR-RAQDFVYHLHCF---------ACVVCKRQLAT 105 (169)
T ss_dssp CBCTTTCCBCCTTSEEE-EETTEEEEGGGC---------BCTTTCCBCCT
T ss_pred ccccccccccCCCcEEE-EcCCceEeeCCC---------cCCCCCCCCCC
Confidence 46788877766655332 235788888883 48888777753
No 198
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.05 E-value=18 Score=27.42 Aligned_cols=45 Identities=24% Similarity=0.446 Sum_probs=26.6
Q ss_pred CCCcccccccccccCCCceEEeCCC---CccchhHHHHHHhc---CCCCCCc-ccc
Q 018364 296 HGGETCAICLEDYQDGEKLKVLSCK---HEFHASCVDSWLTK---WGTFCPV-CKH 344 (357)
Q Consensus 296 ~~~~~CaICLe~f~~~~~vr~LpC~---H~FH~~CI~~Wl~~---~~~~CPl-CR~ 344 (357)
.+...| ||-... .++.|.-=-|. .-||..|+. |.. ..-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~-~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC-SSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC-CCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 445677 998743 24422222333 689999986 222 2346999 974
No 199
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=23.81 E-value=24 Score=25.43 Aligned_cols=47 Identities=28% Similarity=0.463 Sum_probs=29.8
Q ss_pred CcccccccccccCC-CceEEeCCCCccchhHHHHHHh----cCCCCCCccccc
Q 018364 298 GETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLT----KWGTFCPVCKHD 345 (357)
Q Consensus 298 ~~~CaICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 345 (357)
...| ||-..+..+ ..|.---|.--||..|+.---. .....||.|+..
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3445 898876543 3343335899999999953211 124569999764
No 200
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=23.75 E-value=17 Score=34.95 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCcccccccccccCCC-ceEEeCCCCccchhHHHHHHhc------CCCCCCcccccCc
Q 018364 297 GGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLTK------WGTFCPVCKHDMR 347 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~~------~~~~CPlCR~~i~ 347 (357)
....|.+|-..|..-. +...-.||++||..|-...+.. ....|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 4568999999986542 1222359999999998765421 1235888866553
No 201
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.49 E-value=35 Score=28.38 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=24.6
Q ss_pred CCCcccccccccccC--CCceEEeCCCCccchhHH
Q 018364 296 HGGETCAICLEDYQD--GEKLKVLSCKHEFHASCV 328 (357)
Q Consensus 296 ~~~~~CaICLe~f~~--~~~vr~LpC~H~FH~~CI 328 (357)
.+...|++|...|.. +-...-..|+|.++..|=
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 357899999998643 334455569999999985
No 202
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.25 E-value=52 Score=25.70 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=28.4
Q ss_pred ccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcC
Q 018364 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (357)
Q Consensus 300 ~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (357)
.|+.|-+.+...|.+ +..=++.||.+| ..|-.|++.|..
T Consensus 68 ~C~~C~~~I~~~e~~-~~a~~~~~H~~C---------F~C~~C~~~L~~ 106 (131)
T 2xjy_A 68 LCASCDKRIRAYEMT-MRVKDKVYHLEC---------FKCAACQKHFCV 106 (131)
T ss_dssp ECTTTCCEECTTSEE-EEETTEEEEGGG---------CBCTTTCCBCCT
T ss_pred ChhhcCCccCcccee-EeeCCceECccC---------cccCCCCCCCCC
Confidence 799998888765533 223588999999 358889888753
No 203
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=22.96 E-value=25 Score=30.06 Aligned_cols=10 Identities=70% Similarity=1.065 Sum_probs=8.4
Q ss_pred ceEEEecCcc
Q 018364 3 PYYYISTSRG 12 (357)
Q Consensus 3 ~~~~~~~~~~ 12 (357)
.|||||||-|
T Consensus 105 ~YY~IstS~G 114 (178)
T 1iko_P 105 DYYIISTSNG 114 (178)
T ss_dssp EEEEECCCCB
T ss_pred ceEEEecCCc
Confidence 5999999875
No 204
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.65 E-value=15 Score=36.53 Aligned_cols=48 Identities=27% Similarity=0.425 Sum_probs=30.7
Q ss_pred CCcccccccccccCC-CceEEeCCCCccchhHHHHHHhc----CCCCCCccccc
Q 018364 297 GGETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTK----WGTFCPVCKHD 345 (357)
Q Consensus 297 ~~~~CaICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~----~~~~CPlCR~~ 345 (357)
....| ||-..+..+ ..|..--|.--||..|+.-=-.. ....||.|+..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34456 998887633 34444459999999998532111 23469999743
No 205
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.77 E-value=31 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=17.8
Q ss_pred eEEeCCCCccchhHHHHHHhcCCC-CCCcccccCcC
Q 018364 314 LKVLSCKHEFHASCVDSWLTKWGT-FCPVCKHDMRN 348 (357)
Q Consensus 314 vr~LpC~H~FH~~CI~~Wl~~~~~-~CPlCR~~i~~ 348 (357)
.+-..|||.|-.+ .... .||.|......
T Consensus 74 ~~C~~CG~~~e~~-------~~~~~~CP~Cgs~~~~ 102 (119)
T 2kdx_A 74 LECKDCSHVFKPN-------ALDYGVCEKCHSKNVI 102 (119)
T ss_dssp EECSSSSCEECSC-------CSTTCCCSSSSSCCCE
T ss_pred EEcCCCCCEEeCC-------CCCCCcCccccCCCcE
Confidence 3445688887752 2334 69999876443
No 206
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.75 E-value=26 Score=20.58 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=7.8
Q ss_pred CCCcccccCcC
Q 018364 338 FCPVCKHDMRN 348 (357)
Q Consensus 338 ~CPlCR~~i~~ 348 (357)
.||+|+..++.
T Consensus 5 ~CpvCk~q~Pd 15 (28)
T 2jvx_A 5 CCPKCQYQAPD 15 (28)
T ss_dssp ECTTSSCEESS
T ss_pred cCccccccCcC
Confidence 48888876554
No 207
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.73 E-value=59 Score=27.19 Aligned_cols=47 Identities=13% Similarity=0.272 Sum_probs=28.3
Q ss_pred CCcccccccccccCCCceEEeCCCCccchhHHHHHHhcCCCCCCcccccCcCC
Q 018364 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (357)
Q Consensus 297 ~~~~CaICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (357)
.-..|..|-..+.... . ..=+..|+..|-.. .....|..|...|...
T Consensus 86 ~CF~C~~C~~~L~~~~-f--~~~g~~yC~~~y~~---~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC-F--SRGESVYCKDDFFK---RFGTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCC-E--EETTEEECHHHHHH---TTSCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCc-e--eECCEeeecCcccc---ccccccccCCCccCCC
Confidence 3457777777765542 1 12355666666544 3334699999888654
No 208
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=20.47 E-value=67 Score=26.89 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCCCcccccccccccCCCceEEe---CCCCccchhHHHHHHhc
Q 018364 295 CHGGETCAICLEDYQDGEKLKVL---SCKHEFHASCVDSWLTK 334 (357)
Q Consensus 295 ~~~~~~CaICLe~f~~~~~vr~L---pC~H~FH~~CI~~Wl~~ 334 (357)
...+..|.||-+- ..|..- .|...|+.+||+..+-.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 3457799999863 333333 38899999999987655
Done!