Query 018365
Match_columns 357
No_of_seqs 276 out of 1863
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11081 tRNA guanosine-2'-O-m 100.0 1.2E-46 2.6E-51 352.3 22.9 199 143-350 2-203 (229)
2 COG0566 SpoU rRNA methylases [ 100.0 5E-48 1.1E-52 368.1 11.7 235 69-310 21-259 (260)
3 PRK11181 23S rRNA (guanosine-2 100.0 5.6E-47 1.2E-51 357.8 14.0 235 72-309 5-243 (244)
4 PRK10864 putative methyltransf 100.0 2.4E-46 5.3E-51 367.9 14.3 233 68-308 107-344 (346)
5 TIGR00186 rRNA_methyl_3 rRNA m 100.0 7.3E-44 1.6E-48 335.1 14.5 232 71-308 3-237 (237)
6 PF00588 SpoU_methylase: SpoU 100.0 5.9E-38 1.3E-42 271.8 13.2 141 160-302 1-142 (142)
7 TIGR00185 rRNA_methyl_2 rRNA m 100.0 2.9E-37 6.2E-42 272.6 14.9 146 161-310 2-149 (153)
8 PRK10358 putative rRNA methyla 100.0 1.5E-34 3.2E-39 256.7 17.3 146 161-310 2-150 (157)
9 TIGR00050 rRNA_methyl_1 RNA me 100.0 8.9E-33 1.9E-37 259.6 17.6 163 161-330 4-182 (233)
10 PRK15114 tRNA (cytidine/uridin 100.0 2.7E-31 5.8E-36 251.3 18.7 166 160-330 4-191 (245)
11 PRK10433 putative RNA methyltr 100.0 4.1E-30 9E-35 240.6 19.0 165 161-330 3-181 (228)
12 KOG0838 RNA Methylase, SpoU fa 100.0 4.5E-28 9.8E-33 226.9 11.7 147 161-307 112-270 (271)
13 COG0565 LasT rRNA methylase [T 99.9 2.4E-26 5.1E-31 215.1 16.3 166 160-330 4-186 (242)
14 COG0219 CspR Predicted rRNA me 99.9 3.6E-25 7.7E-30 193.7 14.7 146 161-309 3-150 (155)
15 KOG2506 SpoU rRNA Methylase fa 99.9 4.1E-26 8.8E-31 218.4 9.1 146 157-306 214-369 (371)
16 KOG0839 RNA Methylase, SpoU fa 99.8 7.3E-20 1.6E-24 196.0 9.5 151 157-308 1323-1475(1477)
17 PRK03958 tRNA 2'-O-methylase; 98.3 5.2E-06 1.1E-10 75.1 11.4 121 176-306 21-149 (176)
18 PF09936 Methyltrn_RNA_4: SAM- 98.0 2.4E-05 5.2E-10 71.1 9.0 130 174-304 30-182 (185)
19 COG4080 SpoU rRNA Methylase fa 98.0 4.3E-05 9.4E-10 66.4 8.6 137 160-306 2-145 (147)
20 COG1303 Uncharacterized protei 96.3 0.045 9.7E-07 49.0 10.5 119 177-306 23-148 (179)
21 PF08032 SpoU_sub_bind: RNA 2' 96.0 0.00015 3.3E-09 55.8 -5.8 60 72-143 2-62 (76)
22 PRK12703 tRNA 2'-O-methylase; 96.0 0.21 4.6E-06 50.0 14.5 116 177-306 21-143 (339)
23 PF09895 DUF2122: RecB-family 94.6 0.22 4.7E-06 41.9 8.2 84 215-304 21-106 (106)
24 PF01994 Trm56: tRNA ribose 2' 89.8 0.78 1.7E-05 39.3 5.4 88 209-306 2-94 (120)
25 COG4752 Uncharacterized protei 89.0 0.6 1.3E-05 41.7 4.4 132 173-305 30-184 (190)
26 PRK02135 hypothetical protein; 86.6 1.7 3.8E-05 40.5 6.0 79 220-306 114-196 (201)
27 KOG0838 RNA Methylase, SpoU fa 81.7 0.33 7.2E-06 46.8 -0.9 51 253-304 136-190 (271)
28 PF04452 Methyltrans_RNA: RNA 81.5 6.9 0.00015 36.5 7.9 134 162-301 63-220 (225)
29 TIGR00046 RNA methyltransferas 76.8 21 0.00045 33.8 9.6 121 162-285 78-216 (240)
30 COG1385 Uncharacterized protei 76.2 7.8 0.00017 37.1 6.6 123 161-286 79-224 (246)
31 PRK11713 16S ribosomal RNA met 76.1 25 0.00053 33.1 9.9 108 162-277 76-199 (234)
32 PF14419 SPOUT_MTase_2: AF2226 75.1 11 0.00023 34.2 6.6 127 173-305 18-170 (173)
33 PF12105 SpoU_methylas_C: SpoU 74.9 4.9 0.00011 30.1 3.8 39 306-351 1-40 (57)
34 PF04013 Methyltrn_RNA_2: Puta 73.3 16 0.00034 34.2 7.5 79 220-306 113-196 (199)
35 PF04407 DUF531: Protein of un 73.3 51 0.0011 29.9 10.4 48 255-304 120-167 (173)
36 COG2242 CobL Precorrin-6B meth 59.8 41 0.0009 31.1 7.4 101 160-263 59-185 (187)
37 PF07047 OPA3: Optic atrophy 3 52.2 38 0.00082 29.4 5.6 19 292-310 84-102 (134)
38 PF13380 CoA_binding_2: CoA bi 40.8 86 0.0019 26.1 5.9 52 159-238 56-107 (116)
39 COG3426 Butyrate kinase [Energ 36.1 31 0.00067 34.3 2.8 39 168-207 103-143 (358)
40 COG2106 Uncharacterized conser 35.6 38 0.00081 33.1 3.3 25 172-196 26-50 (272)
41 cd04906 ACT_ThrD-I_1 First of 30.1 2.6E+02 0.0057 21.7 7.5 67 163-241 4-74 (85)
42 cd01423 MGS_CPS_I_III Methylgl 28.9 1.2E+02 0.0026 24.9 5.0 65 221-287 14-83 (116)
43 cd04909 ACT_PDH-BS C-terminal 28.3 2.3E+02 0.005 20.4 6.2 66 163-236 4-69 (69)
44 PF13407 Peripla_BP_4: Peripla 27.6 2.8E+02 0.0062 25.0 7.7 45 149-193 19-63 (257)
45 PF09837 DUF2064: Uncharacteri 27.0 61 0.0013 27.5 2.8 77 169-253 40-120 (122)
46 COG4678 Muramidase (phage lamb 27.0 1.6E+02 0.0034 27.0 5.5 69 257-333 56-126 (180)
47 cd04882 ACT_Bt0572_2 C-termina 25.6 2.4E+02 0.0052 19.7 6.3 61 166-237 5-65 (65)
48 PRK04171 ribosome biogenesis p 24.9 2.4E+02 0.0053 26.8 6.7 67 234-304 147-215 (222)
49 TIGR01163 rpe ribulose-phospha 24.6 2.4E+02 0.0053 25.1 6.6 74 169-242 8-88 (210)
50 PF02598 Methyltrn_RNA_3: Puta 24.1 62 0.0013 31.8 2.7 21 174-194 24-44 (291)
51 COG3142 CutC Uncharacterized p 23.2 2.8E+02 0.006 26.7 6.7 93 178-274 79-186 (241)
52 TIGR00246 tRNA_RlmH_YbeA rRNA 23.1 3.6E+02 0.0077 24.0 7.1 66 234-306 66-141 (153)
53 PF02590 SPOUT_MTase: Predicte 23.1 79 0.0017 28.1 2.9 68 232-306 66-144 (155)
54 cd06299 PBP1_LacI_like_13 Liga 21.6 5.9E+02 0.013 22.8 9.9 45 148-193 19-63 (265)
55 PRK00103 rRNA large subunit me 20.9 5.3E+02 0.011 22.9 7.7 67 233-306 67-144 (157)
56 PF14044 NETI: NETI protein 20.4 87 0.0019 23.5 2.2 24 216-239 4-27 (57)
57 COG4087 Soluble P-type ATPase 20.4 1.2E+02 0.0026 26.9 3.3 86 170-281 52-137 (152)
No 1
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=100.00 E-value=1.2e-46 Score=352.26 Aligned_cols=199 Identities=34% Similarity=0.491 Sum_probs=183.3
Q ss_pred chhhHHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCCh
Q 018365 143 MEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222 (357)
Q Consensus 143 ~~~r~~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l 222 (357)
+++|.++|++++++++++++||||+|+||+|+|||+|||+|||++.||++.+.. .+....++|+|+.+|+++..+.++
T Consensus 2 ~~~r~~ri~~~l~~r~~~l~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~~~~--~~~~~~~~s~Ga~~wv~i~~~~~~ 79 (229)
T PRK11081 2 NPERYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMGSTAAGSNSWVQVKTHRTI 79 (229)
T ss_pred CchhHHhHHHHHhcCCCCeEEEEeCCCCcchHHHHHHHHHHhCCCeEEEecCCC--ccchhhhhcCCchheEEEEEeCCH
Confidence 456788999999999999999999999999999999999999999999886543 234567899999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHH
Q 018365 223 RECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (357)
Q Consensus 223 ~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Ly 302 (357)
.++++.|++.||+|++++...++.++.++++++|+|||||||+.|||+++++.||..|+|||.|+++|||||||+||+||
T Consensus 80 ~~~i~~lk~~g~~i~at~~~~~a~~l~~~d~~~p~alV~GnE~~GlS~e~l~~~D~~v~IPM~G~v~SLNVSvAaaIiLy 159 (229)
T PRK11081 80 GDAVAHLKGQGMQILATHLSDTAVDFREIDYTRPTCILMGQEKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILY 159 (229)
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCccHhHhcccCCeEEEECCCCCCCCHHHHhcCCCEEEEeCCCCCCceeHHHHHHHHHH
Confidence 99999999999999999987778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCC---CCCCCHHHHHHHHHHHHHhhcCchHHHHHHHHhhcc
Q 018365 303 HAVCDRATRLGC---NGDLTSEEKQILLAEFSLRHSKSAISIVHEYAKRKE 350 (357)
Q Consensus 303 e~~rqr~~~~~~---~~~ls~eE~~~ll~~~~~r~~~~~~~i~~~~~~~~~ 350 (357)
|+.|||...+.+ .+.|++||.+.++.+|. ..++.+++++++
T Consensus 160 E~~Rqr~~~g~y~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~ 203 (229)
T PRK11081 160 EAQRQRQNAGMYLRENSMLPEEEQQRLLFEGG-------YPVLAKVAKRKG 203 (229)
T ss_pred HHHHhhccCCCcCcCCCCCCHHHHHHHHHhhc-------CHHHHHHHHHcC
Confidence 999998876543 67899999999999994 788999999987
No 2
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-48 Score=368.09 Aligned_cols=235 Identities=23% Similarity=0.257 Sum_probs=190.4
Q ss_pred CCCCCcHHHHHHhhcCCcchhhhhhcccccccCCCcchhhhhh-ccCCccccccccCCC--eeeCcHHHHHhcCCCcchh
Q 018365 69 ENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLS-NKRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEE 145 (357)
Q Consensus 69 ~~~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA-~~~~~~~~~~~~~~~--~~~~~qgv~~~l~~~~~~~ 145 (357)
++..||.|+|++++.+...|.++|+++++.. ++.+ .+.+++ .+..+.++++..++. ....|||+++.+.+.....
T Consensus 21 ~~~~~G~~~v~~al~~~~~i~~i~~~~~~~~-~~~~-~~~~~~~~~~~~~~v~~~~l~~~~~~~~hqGi~a~~~~~~~~~ 98 (260)
T COG0566 21 EFLIEGEHAVLEALASGPKIVRILVTEGRLP-RFEE-LLALAAAKGIPVYVVSEAILDKLSGTENHQGIVAVVKKRRYPL 98 (260)
T ss_pred cEEEeeHHHHHHHHhcCCCceEEEEecccch-hHHH-HHHHHHhcCCeEEEECHHHHHHHhCCCCCCeEEEEEecccccc
Confidence 3678999999999955559999999998873 4552 444443 222233445444443 3567888888887665432
Q ss_pred hHHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCC-hHH
Q 018365 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDA-PRE 224 (357)
Q Consensus 146 r~~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~-l~~ 224 (357)
..+.+.. ...+++|+||+|+||||+|||+|||++||+++||+..+++++.++++.|+|+|+.+++|+.++.| ..+
T Consensus 99 ~~~~~~~----~~~~l~lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~ 174 (260)
T COG0566 99 LDDLLDA----EAQPLLLVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLART 174 (260)
T ss_pred hhhhhhc----ccCCEEEEEecCcCCcchhhHHhhHHHhCCCEEEECCCccCCccceeEEecCChheeceeEEEeccHHH
Confidence 1111111 25679999999999999999999999999999988887777777789999999999999999886 455
Q ss_pred HHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHH
Q 018365 225 CFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHA 304 (357)
Q Consensus 225 ~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~ 304 (357)
+++.+++.|||++||+.++ +.++++.++++|++||||||++|||+++++.||.+|+|||.|.++|||||||+||+|||+
T Consensus 175 ~~~~~~~~G~~v~~t~~~~-~~~~~~~~~~~~~aLvlG~Eg~Gls~~~~~~~D~~v~IPm~G~v~SLNVsvAagI~Lye~ 253 (260)
T COG0566 175 LLELLKEAGFWVVATSLDG-EVDLYETDLPKKTALVLGNEGEGLSRLLLEHADQLVRIPMAGKVESLNVSVAAGILLYEA 253 (260)
T ss_pred HHHHHHHcCeEEEEECCCC-CcchhhccccCCEEEEECCCCCCcCHHHHhhCCEEEEecCCCCcchhHHHHHHHHHHHHH
Confidence 5555666999999999986 688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 018365 305 VCDRAT 310 (357)
Q Consensus 305 ~rqr~~ 310 (357)
.|||..
T Consensus 254 ~rq~~~ 259 (260)
T COG0566 254 RRQRRA 259 (260)
T ss_pred HHhhcC
Confidence 998753
No 3
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=100.00 E-value=5.6e-47 Score=357.78 Aligned_cols=235 Identities=23% Similarity=0.272 Sum_probs=190.3
Q ss_pred CCcHHHHHHhh-cCCcchhhhhhcccccccCCCcchhhhhh-ccCCccccccccCCC--eeeCcHHHHHhcCCCcchhhH
Q 018365 72 TPSKDNVEKLL-TNPDDVTQFMKMERSCMVNDGVGSMESLS-NKRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEERK 147 (357)
Q Consensus 72 ~~g~~av~all-~~p~~I~rL~~~~~~~~~~~~~~~~~~LA-~~~~~~~~~~~~~~~--~~~~~qgv~~~l~~~~~~~r~ 147 (357)
.||.|+|+++| ++++.|.+||++.+..+.++. +.++.+. .+..+..+++..++. ....|||+++.+.+..... .
T Consensus 5 i~G~~~v~eal~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~-~ 82 (244)
T PRK11181 5 IYGIHAVQALLERAPERFIEVFVLKGREDKRLL-PLINELEAQGIVIQLANRQTLDEKAEGAVHQGIIARVKPGRQLQ-E 82 (244)
T ss_pred EEehHHHHHHHhCCCCceeEEEEECCCcchHHH-HHHHHHHHcCCcEEEeCHHHHhhhhcCCCCceEEEEEecccccc-h
Confidence 69999999999 678999999998664332222 2232221 122334455555555 4567999988887543211 1
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHHH
Q 018365 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN 227 (357)
Q Consensus 148 ~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l~ 227 (357)
..+.++++.+..+++++||+|+||+|+|+|+|||++||+++|++.++.+.+.++++.|+|+|+.+|+|+.++.++.++++
T Consensus 83 ~~~~~~~~~~~~~~~lvLd~v~dp~NlGai~Rta~a~G~~~vi~~~~~~~~~~~~~~r~s~Ga~~~l~~~~~~~~~~~l~ 162 (244)
T PRK11181 83 NDLPDLLASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMR 162 (244)
T ss_pred hhHHHHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHcCCCEEEECCCCCCCCCCceEEecCCHHHcCeEEEcCCHHHHHH
Confidence 23566655555679999999999999999999999999999987665555555688999999999999999999999999
Q ss_pred HHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHh
Q 018365 228 VLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCD 307 (357)
Q Consensus 228 ~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~rq 307 (357)
.|++.||++++++... +.++++.++++|++||||||+.|||+++++.||..|+|||.|.++|||||||+||+|||++||
T Consensus 163 ~l~~~g~~i~~t~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq 241 (244)
T PRK11181 163 MLQEKNIWIVGTAGEA-DHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 (244)
T ss_pred HHHHCCCEEEEEeCCC-CcchhhcCCCCCEEEEECCCCCCcCHHHHHhCCEEEEEcCCCCCceeeHHHHHHHHHHHHHHh
Confidence 9999999999999764 467888999999999999999999999999999999999999999999999999999999988
Q ss_pred hh
Q 018365 308 RA 309 (357)
Q Consensus 308 r~ 309 (357)
|.
T Consensus 242 r~ 243 (244)
T PRK11181 242 RS 243 (244)
T ss_pred hc
Confidence 64
No 4
>PRK10864 putative methyltransferase; Provisional
Probab=100.00 E-value=2.4e-46 Score=367.86 Aligned_cols=233 Identities=18% Similarity=0.230 Sum_probs=191.4
Q ss_pred CCCCCCcHHHHHHhh-cCCcchhhhhhcccccccCCCcchhhhhhcc-CCccccccccCCC--eeeCcHHHHHhcCCCcc
Q 018365 68 DENDTPSKDNVEKLL-TNPDDVTQFMKMERSCMVNDGVGSMESLSNK-RWFPYLDRYKCGD--VYLSSSEVVEALSPYLM 143 (357)
Q Consensus 68 ~~~~~~g~~av~all-~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~~-~~~~~~~~~~~~~--~~~~~qgv~~~l~~~~~ 143 (357)
+|+..||.|+|.++| ++|+.|.+||+.++..+ ++. +.+++++.. ..+..+++..++. ....|||+++.+.....
T Consensus 107 ~~~~I~G~~aV~ealk~~~~~i~~l~~~~~~~~-~~~-~il~~~~~~~~~v~~V~~~~l~kls~~~~hqGV~A~v~~~~~ 184 (346)
T PRK10864 107 EETRVYGENACQALFQSRPEAIVRAWFIQSVTP-RFK-EALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNG 184 (346)
T ss_pred CCcEEEEHHHHHHHHhCCCCceeEEEEecCccH-HHH-HHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCeEEEEEeCCCC
Confidence 468999999999999 66899999999987654 454 356666532 2223344444444 34568888887765432
Q ss_pred hhhHHHHHHHHhc-CCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCCh
Q 018365 144 EERKERFVNVVKN-RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222 (357)
Q Consensus 144 ~~r~~~i~~v~~~-~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l 222 (357)
. .++++++. ...+++||||+|+||+|+|+|+|||++||+++|++.+. +....+++.|+|+|+.+++|++.+.|+
T Consensus 185 ~----~l~~~l~~~~~~~~vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~~~-~~~~~~kvvRaS~Ga~~~v~i~~~~nl 259 (346)
T PRK10864 185 T----DVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDSF 259 (346)
T ss_pred C----CHHHHhhccccCCeEEEEeCCCCCCcHHHHHHHHHHhCCCEEEECCC-CCCCchhHHHHhcChhhcceEEEeCCH
Confidence 2 24444443 23468999999999999999999999999999987654 444456889999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHH
Q 018365 223 RECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (357)
Q Consensus 223 ~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Ly 302 (357)
.++++.|++.||+|++++... ..++++++++++++||||||+.||++++++.||.+|+|||.|.++|||||||+||+||
T Consensus 260 ~~~L~~lk~~G~~Iv~t~~~~-~~~l~~~~~~~k~aLV~GnE~~GLs~~vl~~~D~~V~IPm~G~veSLNVSvAaaI~Ly 338 (346)
T PRK10864 260 VDVLDDFRQAGYTIVTTSSHK-GTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSIDGTGNVESLNVSVATGVLLA 338 (346)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-CcchhhcccCCCeEEEECCCCCCCCHHHHHhCCEEEEECCCCCCCCeEHHHHHHHHHH
Confidence 999999999999999999764 4789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 018365 303 HAVCDR 308 (357)
Q Consensus 303 e~~rqr 308 (357)
||+||+
T Consensus 339 E~~Rq~ 344 (346)
T PRK10864 339 EWWRQN 344 (346)
T ss_pred HHHHhh
Confidence 999875
No 5
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=100.00 E-value=7.3e-44 Score=335.10 Aligned_cols=232 Identities=24% Similarity=0.299 Sum_probs=177.8
Q ss_pred CCCcHHHHHHhhcCCcchhhhhhcccccccCCCcchhhhhhc-cCCccccccccCCC--eeeCcHHHHHhcCCCcchhhH
Q 018365 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSN-KRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEERK 147 (357)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~-~~~~~~~~~~~~~~--~~~~~qgv~~~l~~~~~~~r~ 147 (357)
..||.|+|++++.+. .++|........+.. +.++.+.+ +..+.++++..++. ....|||+++.+.+......
T Consensus 3 ~i~G~~~v~eal~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~l~~l~~~~~~qGv~a~~~~~~~~~~- 77 (237)
T TIGR00186 3 YLYGKNAVLEALLNQ---QRVFILKGLESKRLK-KLIQLAKKQGINIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDL- 77 (237)
T ss_pred EEEehHHHHHHHhCC---CEEEEEecCcchHHH-HHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCeEEEEEecCCCCCH-
Confidence 469999999999544 444544332111122 12222221 22333455554544 34578888887765443221
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHHH
Q 018365 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN 227 (357)
Q Consensus 148 ~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l~ 227 (357)
+.+.........+++|+||+|+||+|+|+|+|||++||+++|++.+.++.+..+++.|+|+|+.+|+|+..+.|+.++++
T Consensus 78 ~~~~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~afG~~~vil~~~~~~~~~~~~~r~s~Ga~~~l~~~~~~~~~~~l~ 157 (237)
T TIGR00186 78 NDLYKTAKSKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTIT 157 (237)
T ss_pred HHHHHhhhccCCCEEEEEcCCCCCccHHHHHHHHHHcCCCEEEECCCCcCCCCCceeeeeccccceeEEEEeCCHHHHHH
Confidence 12222223334578999999999999999999999999999987766554445688999999999999999999999999
Q ss_pred HHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHh
Q 018365 228 VLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCD 307 (357)
Q Consensus 228 ~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~rq 307 (357)
.|+++||++++++..++ ..+++.++++|++||||||+.||++++++.||.+|+|||.|.++|||||+|+||+|||++||
T Consensus 158 ~l~~~g~~i~~~~~~~~-~~~~~~~~~~~~~lv~GnE~~Gls~~~l~~~d~~v~IP~~g~~~SLNVsvAaaI~lye~~rq 236 (237)
T TIGR00186 158 KLKESGFWTVGTDLDAQ-DTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIKRQ 236 (237)
T ss_pred HHHHCCCEEEEEecCCC-ccccccccCCCEEEEECCCCCCcCHHHHHhCCEEEEECCCCCCCcchHHHHHHHHHHHHHhc
Confidence 99999999999998754 34778889999999999999999999999999999999999999999999999999999987
Q ss_pred h
Q 018365 308 R 308 (357)
Q Consensus 308 r 308 (357)
|
T Consensus 237 r 237 (237)
T TIGR00186 237 R 237 (237)
T ss_pred C
Confidence 4
No 6
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=100.00 E-value=5.9e-38 Score=271.84 Aligned_cols=141 Identities=39% Similarity=0.576 Sum_probs=126.3
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccc-hhhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEE
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRY-RENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIAT 238 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~-~~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~a 238 (357)
+++|+||+++||+|+|+|+|||++||+++|+++++.+.+++ .++.|+|+|+.+|+|+..++++.++++++++.||++++
T Consensus 1 ~l~vvl~~~~~p~NlG~i~Rta~afG~~~v~l~~~~~~~~~~~~~~r~s~g~~~~~~~~~~~~~~~~l~~~~~~g~~i~~ 80 (142)
T PF00588_consen 1 MLIVVLDNVQDPGNLGAIIRTAAAFGVDGVILVGPRCADPYNPKVLRASAGAHEHLPIRRVDDLEEALKDLKENGYTIVA 80 (142)
T ss_dssp SEEEEEES-SSHHHHHHHHHHHHHTTESEEEEESSSSSTTTSHHHHHHTTTGHHCSHEEEESSHHHHHHHHHHTTEEEEE
T ss_pred CEEEEEeCCCCcCcHHHHHHHHHHhCCchhheeccccccccccccccccCChhhhhheeeeehhhhhcccccccccccce
Confidence 37899999999999999999999999999999987776554 47899999999999999999999999999999999999
Q ss_pred EeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHH
Q 018365 239 THVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (357)
Q Consensus 239 t~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Ly 302 (357)
++. ++.++.+++|+++++||||||+.||++++++.||.+|+|||.|.++|||||+|++|+||
T Consensus 81 ~~~--~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IP~~~~~~SLNva~A~~I~ly 142 (142)
T PF00588_consen 81 TSP--GATPLYELDFPKKVALVFGNESRGLSEEVLELCDHRVSIPMYGGVDSLNVAVAAAIALY 142 (142)
T ss_dssp EST--TSCEGGGSHTTSSEEEEEEBTTTBS-HHHHHTSSEEEE---STTSSS--HHHHHHHHHH
T ss_pred eee--ccccccccccccceEEEEcCcCCCCCcccccccceEEEEcCCCCCCeeEHHHHHHHHHC
Confidence 998 35789999999999999999999999999999999999999999999999999999998
No 7
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=100.00 E-value=2.9e-37 Score=272.64 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=128.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccch-hhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEE
Q 018365 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239 (357)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at 239 (357)
+-||||+++||+|+|+|+|||++||++.++ +.+++.+... +..|+++|+.+++|+..+.|+.++++.||+.| ++++
T Consensus 2 ~~vvL~~v~dP~NlG~iiRta~afGv~~vi-~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~l~~l~~~g--v~~~ 78 (153)
T TIGR00185 2 LNIVLYEPEIPPNTGNIARTCAATGTRLHL-IEPLGFFLDDKRLKRAGLDYWEFVQLFYHKSWEEFLEAEKPQK--LFAL 78 (153)
T ss_pred eEEEEcCCCCCChHHHHHHHHHHhCCEEEE-ECCCCCCCccHHHHhhccchHhcCCeEEeCCHHHHHHhCcCCC--EEEE
Confidence 468999999999999999999999997664 5555555444 45689999999999999999999999999988 6666
Q ss_pred eeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhC-CcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 018365 240 HVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLS-DLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRAT 310 (357)
Q Consensus 240 ~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~c-D~~v~IPm~g~v~SLNVSvAaaI~Lye~~rqr~~ 310 (357)
+..+ +..+++++++.+.+||||||++||++++++.| |..++|||+|.++|||||+|+||+|||++||+..
T Consensus 79 ~~~~-~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~~d~~v~IP~~g~~~SLNvavA~aI~lye~~rq~~~ 149 (153)
T TIGR00185 79 TKKG-TPAHSQVTYKLGDYLMFGPETRGLPQSILDNMMEQKIRIPMTNNVRSLNLSNSVAIVVYEAWRQLGY 149 (153)
T ss_pred eCCC-CCcceeeccCCCCEEEECCCCCCCCHHHHhhCCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHccCC
Confidence 6543 56788888999999999999999999999999 9999999999999999999999999999988654
No 8
>PRK10358 putative rRNA methylase; Provisional
Probab=100.00 E-value=1.5e-34 Score=256.67 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=121.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhc-CCCceeeeeeeeCChHHHHHHHHhCCcEEEEE
Q 018365 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVS-MGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239 (357)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S-~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at 239 (357)
+.|||++++||||+|+|+|||+|||++.+ ++.+++++..+++.|++ +|...|+++..+.++.++++.+ .+++++++
T Consensus 2 ~~ivL~~~~dPgNlGti~Rta~a~G~~~v-iv~~~~d~~~~k~~raag~~~~~~~~~~~~~~l~~~l~~~--~~~~v~~~ 78 (157)
T PRK10358 2 LNIVLFEPEIPPNTGNIIRLCANTGFRLH-IIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYAAFLEAE--NPQRLFAL 78 (157)
T ss_pred eEEEEeCCCCcChHHHHHHHHHHhCCEEE-EECCCCCCCChHHHHhcccccccceeeEEcCCHHHHHHhC--CCceEEEE
Confidence 46899999999999999999999999755 56776654445666653 4444556677778998888743 35889999
Q ss_pred eeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhh--CCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 018365 240 HVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL--SDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRAT 310 (357)
Q Consensus 240 ~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~--cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~rqr~~ 310 (357)
+..+ ...+.+.++.++.+||||||++||++++++. ||..|+|||.|.++|||||+|++|+|||++|||..
T Consensus 79 ~~~~-~~~~~~~~~~~~~~lvfGnE~~GLs~~~~~~~~~d~~v~IPm~~~~eSLNvAvA~aI~lyE~~rqr~~ 150 (157)
T PRK10358 79 TTKG-TPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQLGY 150 (157)
T ss_pred eCCC-CCCccccccCCCcEEEECCCCCCCCHHHHhcCCCCeEEEEcCCCCCccchHHHHHHHHHHHHHHhhcC
Confidence 9864 4456677788899999999999999999998 89999999999999999999999999999998753
No 9
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=100.00 E-value=8.9e-33 Score=259.55 Aligned_cols=163 Identities=21% Similarity=0.257 Sum_probs=133.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeee-eeCChHHHHHHHHhCCcEEEEE
Q 018365 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIE-LWDAPRECFNVLRSRGYRIATT 239 (357)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~-~~~~l~~~l~~Lk~~G~~i~at 239 (357)
+.|||++++||+|+|+|+|+|++||+++++++++.+. ..+.+.++|+|+.++++.. .+++++++++++ + .++||
T Consensus 4 i~vvL~~~~~p~NiGaiaR~~~~fG~~~l~lv~p~~~-~~~~a~~~a~ga~~~l~~~~v~~~l~eal~~~---~-~vv~t 78 (233)
T TIGR00050 4 IRIVLVEPSHSGNIGSIARAMKNMGLTELCLVNPKSH-LEEEAYALAAGARDILDNAKVVDDLDEALDDC---D-LVVGT 78 (233)
T ss_pred eEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCcC-CCHHHHHHhCChHHhhccCEEECCHHHHHhcC---C-EEEEE
Confidence 6799999999999999999999999999999988765 5567889999999999864 468898888753 3 57888
Q ss_pred eeCCCceeeccc------------CCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHh
Q 018365 240 HVGMDAISVYDM------------DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCD 307 (357)
Q Consensus 240 ~~~~~s~~l~~~------------~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~rq 307 (357)
+... ..+.+. ++.++++||||||+.||++++++.||.+++|||+|.++|||||+|++|+|||+.++
T Consensus 79 t~~~--~~~~~~~~~~~~~~~~~~~~~~~~aLvFG~E~~GL~~~~l~~cd~~v~IP~~~~~~SLNla~Av~I~lye~~~~ 156 (233)
T TIGR00050 79 SARS--RNLQRPLLTPRELAPKLVAYKGKIAIVFGREDSGLTNEELLKCHVLVSIPTSEEYPSLNLSHAVAVILYELRMA 156 (233)
T ss_pred CCCc--CCCCCCcCCHHHHHHHHHhhcCCEEEEECCCCCCCCHHHHHhCCEEEEecCCCCCCeeeHHHHHHHHHHHHHHh
Confidence 7542 333332 24679999999999999999999999999999999999999999999999999876
Q ss_pred hhhhcCC--C-CCCCHHHHHHHHHHH
Q 018365 308 RATRLGC--N-GDLTSEEKQILLAEF 330 (357)
Q Consensus 308 r~~~~~~--~-~~ls~eE~~~ll~~~ 330 (357)
+...... . ...+.+|.+.++.+|
T Consensus 157 ~~~~~~~~~~~~~a~~~~~~~l~~~l 182 (233)
T TIGR00050 157 FLVQEENLIDKEYATTDQLELLLEHL 182 (233)
T ss_pred hcccCCCccCCCCCCHHHHHHHHHHH
Confidence 5433211 1 345678888777665
No 10
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=99.97 E-value=2.7e-31 Score=251.25 Aligned_cols=166 Identities=14% Similarity=0.186 Sum_probs=129.5
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeee-eeCChHHHHHHHHhCCcEEEE
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIE-LWDAPRECFNVLRSRGYRIAT 238 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~-~~~~l~~~l~~Lk~~G~~i~a 238 (357)
.+.|||++++||+|+|+|+|+|++||+++++++.+++. +++.+.++|+|+.+.++.. .+++++++++++ ..++|
T Consensus 4 ~i~vVLv~~~~pgNiGaiaRa~~~fG~~~l~lv~p~~~-~~~~a~~~a~GA~~~l~~a~i~~~l~eal~~~----~~vva 78 (245)
T PRK15114 4 NIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNATIVDTLDEALAGC----SLVVG 78 (245)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeCCCCC-CcCHHHHHcCCchhhcccCeEecCHHHHHhcC----CEEEE
Confidence 36799999999999999999999999999999988754 4556789999999755432 356777777653 36999
Q ss_pred EeeCCCceee------------cccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 239 THVGMDAISV------------YDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 239 t~~~~~s~~l------------~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
|+........ ....+.++++||||||+.||+++.++.||.+++|||.|.++|||||+|++|+|||+.+
T Consensus 79 tt~r~~~~~~~~~~~~~~~~~~~~~~~~~~~alVFG~E~~GLs~e~l~~cd~~v~IP~~~~~~SLNla~AvaI~lYE~~~ 158 (245)
T PRK15114 79 TSARSRTLPWPMLDPRECGLKSVAEAANAPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRM 158 (245)
T ss_pred EcCCccCCcccccCHHHHHHHHHhhccCCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCCCCcccHHHHHHHHHHHHHH
Confidence 9875422111 1123567899999999999999999999999999999999999999999999999976
Q ss_pred hhhh--hcC------C-CCCCCHHHHHHHHHHH
Q 018365 307 DRAT--RLG------C-NGDLTSEEKQILLAEF 330 (357)
Q Consensus 307 qr~~--~~~------~-~~~ls~eE~~~ll~~~ 330 (357)
.... ... . ....+.+|.+.++.+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~l 191 (245)
T PRK15114 159 AWLATQENGEPQVEHEETPYPLVDDLERFYGHL 191 (245)
T ss_pred HhcccccccccccccccCCCCCHHHHHHHHHHH
Confidence 4221 010 0 1235678888887776
No 11
>PRK10433 putative RNA methyltransferase; Provisional
Probab=99.97 E-value=4.1e-30 Score=240.57 Aligned_cols=165 Identities=19% Similarity=0.282 Sum_probs=130.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeee-eeeeCChHHHHHHHHhCCcEEEEE
Q 018365 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAPRECFNVLRSRGYRIATT 239 (357)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~-v~~~~~l~~~l~~Lk~~G~~i~at 239 (357)
+.|||+++++|+|+|+|+|+|++||++++++++|.+.+ ...+.++|+||..+++ ...++|++++++++ +| ++|+
T Consensus 3 i~vVLv~p~~p~NiGaiaRam~nfG~~~L~lV~p~~~~-~~~a~~~A~gA~d~L~~a~v~~tL~eAl~d~---~~-vigt 77 (228)
T PRK10433 3 LTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAHL-EPAARWVAHGSGDILDNAKVFDTLAEALHDV---DF-TVAT 77 (228)
T ss_pred eEEEEEcCCCCccHHHHHHHHHHCCCCEEEEeCCCCCC-cHHHHHHhccHHHHhcCceEECCHHHHHHhC---Ce-EEEE
Confidence 67999999999999999999999999999999887542 4466799999999998 44578999999884 54 5555
Q ss_pred eeCCCc--eeecc----------c-CCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 240 HVGMDA--ISVYD----------M-DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 240 ~~~~~s--~~l~~----------~-~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
+...+. .++.. . ++.++++||||+|+.||+++.++.||.+++|||.|.++|||||+|++|++||+.+
T Consensus 78 tar~~~~~~~~~~p~~~~~~l~~~~~~~~~~alvfG~E~~Gl~~~~l~~c~~~~~IP~~~~~~SLNla~A~~i~~ye~~~ 157 (228)
T PRK10433 78 TARSRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAG 157 (228)
T ss_pred ccCCCCCCCcccCHHHHHHHHHhhhcccCCEEEEECCCCCCCCHHHHHhCCcEEEecCCCCCcceeHHHHHHHHHHHHHH
Confidence 543221 11111 1 2347899999999999999999999999999999999999999999999999875
Q ss_pred hhhhhcCCCCCCCHHHHHHHHHHH
Q 018365 307 DRATRLGCNGDLTSEEKQILLAEF 330 (357)
Q Consensus 307 qr~~~~~~~~~ls~eE~~~ll~~~ 330 (357)
............+.+|.+.++.+|
T Consensus 158 ~~~~~~~~~~~a~~~ele~l~~~l 181 (228)
T PRK10433 158 LMQQPAKSDTTADEGQLQALRQRA 181 (228)
T ss_pred hhccCCcCCCCCCHHHHHHHHHHH
Confidence 421111223456788888886666
No 12
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=99.95 E-value=4.5e-28 Score=226.86 Aligned_cols=147 Identities=39% Similarity=0.486 Sum_probs=135.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEEe
Q 018365 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTH 240 (357)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~ 240 (357)
++++||++.||+|+|+|+|+|++||++.++++..++.+.++.+.++++|+.+|+|+.++++..+++...+.+|+++.+|.
T Consensus 112 l~vylde~tDp~n~gaI~rsA~~lg~~~v~lv~~n~s~lS~~vskss~gale~l~I~q~~~~~efl~vsvaaG~~l~~t~ 191 (271)
T KOG0838|consen 112 LCVYLDEVTDPQNIGAIIRSAYFLGADGVLLVKGNSSPLSPVVSKSSAGALEVLPIRQVDNPLEFLNVSVAAGIRLHGTC 191 (271)
T ss_pred EEeeccCccCCcchHHHHHhHHHhcCCceEEEeccCCCCchhHHHhhhchhheeeHHHcCCHHHHHHHHHhCceEEEEee
Confidence 78999999999999999999999999999999988877888899999999999999999999999999999999999987
Q ss_pred eCCC------ceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCC------CCCcccHHHHHHHHHHHHHHh
Q 018365 241 VGMD------AISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKG------MVDSFNVSVAAGILMHHAVCD 307 (357)
Q Consensus 241 ~~~~------s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g------~v~SLNVSvAaaI~Lye~~rq 307 (357)
.... ...+..+++..|+++|+|||+.|+++.+++.||..+.||++| .++|||||+|+++++|++..+
T Consensus 192 ~~~~~~~~~~~~~l~~~~~~~Pv~lv~Gneg~Gi~~~vl~~~d~~~si~~n~~~~d~~~v~SlNvSvaa~ll~~~~~~~ 270 (271)
T KOG0838|consen 192 SWAPASKTISAVSLKFIDPEEPVALVLGNEGAGIRPGVLELCDLRVSIPGNGFEKDNGAVDSLNVSVAAGLLLYHFLNE 270 (271)
T ss_pred cCcCCcccccchhhhhcCCCCCeEEEecccccccChhhhhccceeEecCCCccccCCcceeeccchHHHHHHHHHHhhc
Confidence 6433 456777788999999999999999999999999999999932 379999999999999999754
No 13
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.4e-26 Score=215.14 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=132.3
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceee-eeeeeCChHHHHHHHHhCCcEEEE
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWL-DIELWDAPRECFNVLRSRGYRIAT 238 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v-~v~~~~~l~~~l~~Lk~~G~~i~a 238 (357)
.+.|||.+++.|+|+|+++|.|++||++.+++++|++. +.+.++..|+||..-+ +...++++++++.++. .++|
T Consensus 4 ~i~iVLVep~~~gNIG~vARaMKNfGl~eL~LV~Pr~~-~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~----~v~a 78 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSVARAMKNFGLSELRLVNPRAG-LDEEARALAAGARDILENAKIVDTLEEALADCD----LVVA 78 (242)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHhCCcceEEEECCCCC-CCHHHHHHhccchhhhccCeeecCHHHHhcCCC----EEEE
Confidence 35799999999999999999999999999999998765 5567888899998765 4777899999998764 5777
Q ss_pred EeeCCCce-eecccCC-----------CCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 239 THVGMDAI-SVYDMDW-----------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 239 t~~~~~s~-~l~~~~~-----------~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
|+...... ...-.|+ .++++||||+|..||++|.++.||.+++||+++.+.|||+|+|++|++|||++
T Consensus 79 Ttar~r~~~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~GLtNeEl~~c~~~v~IP~~p~Y~sLNLa~AV~ii~YEl~~ 158 (242)
T COG0565 79 TTARSRDLLRPLRTPREAAPELLEKAKGGKVALVFGRERVGLTNEELALCDVLVTIPANPDYPSLNLAQAVQVILYELRK 158 (242)
T ss_pred eccccCcccccccCHHHHHHHHHHHhcCCCeEEEECCccCCCCHHHHHhhhEEEecCCCCccccccHHHHHHHHHHHHHH
Confidence 77432211 0011111 37999999999999999999999999999999999999999999999999986
Q ss_pred hhhhhcC----CCCCCCHHHHHHHHHHH
Q 018365 307 DRATRLG----CNGDLTSEEKQILLAEF 330 (357)
Q Consensus 307 qr~~~~~----~~~~ls~eE~~~ll~~~ 330 (357)
.-+...+ .....+.+|.+.++.++
T Consensus 159 ~~l~~~~~~~~~~~~at~~ele~l~~hl 186 (242)
T COG0565 159 AELAQEGSSGIEDELATKEELELLYEHL 186 (242)
T ss_pred hhcccccccccccCCCCHHHHHHHHHHH
Confidence 3333323 24567778887777665
No 14
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.6e-25 Score=193.72 Aligned_cols=146 Identities=17% Similarity=0.201 Sum_probs=132.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccch-hhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEE
Q 018365 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239 (357)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at 239 (357)
+.|||.+++.|.|.|+|+|+|+++|.. +|+++|-..+... ...|+.+-.++.+.+..+++++++++..+. |-++++.
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca~tga~-LhlI~PlGF~l~dk~lkRAGlDY~~~~~l~~h~s~e~fl~~~~~-~~rl~~~ 80 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCAATGAE-LHLIEPLGFDLDDKRLKRAGLDYHEKASLTEHDSLEAFLEAEPI-GGRLFAL 80 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHHhcCCe-EEEEccCCCccchhhhhhcccchHhhcceEEeCCHHHHHhhccC-CceEEEE
Confidence 568999999999999999999999986 8899998877776 578999999999999999999999999887 7889998
Q ss_pred eeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcE-EEECCCCCCCcccHHHHHHHHHHHHHHhhh
Q 018365 240 HVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLR-CSIPMKGMVDSFNVSVAAGILMHHAVCDRA 309 (357)
Q Consensus 240 ~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~-v~IPm~g~v~SLNVSvAaaI~Lye~~rqr~ 309 (357)
+..+ +..+.+..+...-.|+||.|..||++++++..+.. ++|||.....|||+|++++|++||++||..
T Consensus 81 tt~~-~~~~~~~~f~~~d~llFG~Es~GLP~~i~~~~~~~~irIPm~~~~RSLNLsnsvavv~yEa~RQ~~ 150 (155)
T COG0219 81 TTKG-TTTYTDVSFQKGDYLLFGPESRGLPEEILDAAPDRCIRIPMRPGVRSLNLSNTVAVVLYEALRQLG 150 (155)
T ss_pred Eecc-ccccccccCCCCCEEEECCCCCCCCHHHHHhCccceEEeccCCCCccchHHHHHHHHHHHHHHHhC
Confidence 8764 57788889998889999999999999999988766 999999999999999999999999998753
No 15
>KOG2506 consensus SpoU rRNA Methylase family protein [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.1e-26 Score=218.41 Aligned_cols=146 Identities=28% Similarity=0.315 Sum_probs=111.8
Q ss_pred CCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHH---HHHHh--
Q 018365 157 RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECF---NVLRS-- 231 (357)
Q Consensus 157 ~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l---~~Lk~-- 231 (357)
+.-++++|+|+|+||+|+|+|+|||++||+++|++...+|+++.+++.|+++||.|.+||+-. +|...- .....
T Consensus 214 ~~lp~~lvcdnirdpgnlgti~rsaaa~~cs~v~lt~gccdpwe~kalrag~ga~fr~pi~~~-~w~~l~l~~pp~~ad~ 292 (371)
T KOG2506|consen 214 PSLPRVLVCDNIRDPGNLGTIVRSAAAFNCSGVFLTPGCCDPWEDKALRAGRGASFRLPIVSG-NWNHLKLLEPPFQADL 292 (371)
T ss_pred CCCCeEEEeccCCCCcchHHHHHHHhhCCCcceeecCCcCCccchhhhhccCCcceecceecC-chhhhhccCChhHHhh
Confidence 445789999999999999999999999999999888777766667999999999999999864 554321 11111
Q ss_pred CCcEEEEEeeCCCceeeccc-C----CCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 232 RGYRIATTHVGMDAISVYDM-D----WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 232 ~G~~i~at~~~~~s~~l~~~-~----~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
.+..+.++... -.+...+ + ...+.++|+|.|++|+|++.++.|.. |.|||.|.++|||||+|++|+|||+.|
T Consensus 293 c~~~~a~t~qr--~~~~~k~~e~ad~~~ap~~liigge~~gvseea~~~~~l-vgip~a~g~dslnva~a~~illfel~r 369 (371)
T KOG2506|consen 293 CAGHPATTTQR--LKPVSKLVEFADSLAAPLCLIIGGEGNGVSEEARKVCVL-VGIPMAGGFDSLNVAVAGGILLFELQR 369 (371)
T ss_pred hcCchHhhhhh--hccchhhhHHHhhccCceEEEEccCcCCcCHHHHHHHHH-cCCcccCCcchhhhHHHHHHHHHHHhh
Confidence 11112222211 1111111 1 24689999999999999999999975 789999999999999999999999965
No 16
>KOG0839 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=99.80 E-value=7.3e-20 Score=196.00 Aligned_cols=151 Identities=21% Similarity=0.336 Sum_probs=134.8
Q ss_pred CCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeee--CChHHHHHHHHhCCc
Q 018365 157 RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW--DAPRECFNVLRSRGY 234 (357)
Q Consensus 157 ~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~--~~l~~~l~~Lk~~G~ 234 (357)
....++||--=|..|.|+|+|.|||+.||++-+++ ..-...........|+.|..|+|+..+ +++..++++.|+.||
T Consensus 1323 grssLIVVASLVDKppNLgGicRTcEVFgvs~LvV-ad~~vi~DkQFk~lSVtAE~W~pieeVk~~~L~~fLq~kK~EGy 1401 (1477)
T KOG0839|consen 1323 GRSSLIVVASLVDKPPNLGGICRTCEVFGVSLLVV-ADIKVINDKQFKNLSVTAERWMPIEEVKLDELASFLQEKKKEGY 1401 (1477)
T ss_pred CceeEEEEeecccCCCccchhhhhhhhhCcceEEE-eeeeeecchhhhheeeeHHhccchhccChHHHHHHHHHhhhcCc
Confidence 44568999999999999999999999999997754 333333233466789999999999877 588899999999999
Q ss_pred EEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHhh
Q 018365 235 RIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308 (357)
Q Consensus 235 ~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~rqr 308 (357)
+|+|++....+..++++-||+|.+||+|+|..|++-.++..-|.+|.||+.|-+.||||-|++|+++||..||.
T Consensus 1402 TiIglEQTakSV~Ld~fqFPkKslilLG~EkEGIPvnLl~~LD~cvEIpQ~GviRSLNVHVsgAl~iweYTrQq 1475 (1477)
T KOG0839|consen 1402 TIIGLEQTAKSVKLDNFQFPKKSLILLGTEKEGIPVNLLSELDLCVEIPQFGVIRSLNVHVSGALIIWEYTRQQ 1475 (1477)
T ss_pred EEEeehhcccccccccccCCcceeEEecccccCCcHHHHHHHhHheeccccceeeeeeeehhHHHHHHHHHHHh
Confidence 99999998889999999999999999999999999999999999999999999999999999999999998864
No 17
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=98.34 E-value=5.2e-06 Score=75.14 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=83.5
Q ss_pred HHHHHHHHhCCceEEEeCCCCcccchhhh--hhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEEeeCCC--ceeeccc
Q 018365 176 ATFRSADALGVQSVHVVSCDSSKRYRENR--HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMD--AISVYDM 251 (357)
Q Consensus 176 aIlRtA~afGv~~Vii~~~~~~~~~~~~~--r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~~~~~--s~~l~~~ 251 (357)
-+.|||.+||+++++++.+... ....+. -.--|+.+. +...+++.+++++.+..|- ++.+...+. ...+.++
T Consensus 21 hvartARafGa~~~yiv~~~~~-q~~~v~~I~~~WGg~fn--v~~~~s~~~~i~~~k~~G~-vvhLtmyga~~~~~~~~i 96 (176)
T PRK03958 21 HVGLTARALGADKIILASNDEH-VKESVEDIVERWGGPFE--VEVTKSWKKEIREWKDGGI-VVHLTMYGENIQDVEPEI 96 (176)
T ss_pred HHHHHHHHcCCceEEEecCcHH-HHHHHHHHHHhcCCceE--EEEcCCHHHHHHHHHhCCc-EEEEEEecCCccchHHHH
Confidence 3789999999999999876321 111111 122377765 5667899999999996673 333332211 1234444
Q ss_pred C----CCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 252 D----WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 252 ~----~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
. -..|..|||| +.|+++++.+.||..+ ..|..+= .+-.|+||+|-.++.
T Consensus 97 r~~~~~~~p~LIvvG--g~gvp~evye~aDynl---gvg~qpH-SvrAAlAI~LDRL~~ 149 (176)
T PRK03958 97 REAHRKGEPLLIVVG--AEKVPREVYELADWNV---AVGNQPH-SEVAALAVFLDRLFE 149 (176)
T ss_pred HHhhccCCcEEEEEc--CCCCCHHHHhhCCEEe---ccCCCCh-HHHHHHHHHHHHhcC
Confidence 2 1578999999 8899999999999998 4455555 788889999988764
No 18
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=98.04 E-value=2.4e-05 Score=71.07 Aligned_cols=130 Identities=21% Similarity=0.278 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCceEEEeCCCCcccc--hh---hhhhcCCCce------ee-eeeeeCChHHHHHHHHhC-C--cEEEE
Q 018365 174 VSATFRSADALGVQSVHVVSCDSSKRY--RE---NRHVSMGAEK------WL-DIELWDAPRECFNVLRSR-G--YRIAT 238 (357)
Q Consensus 174 lGaIlRtA~afGv~~Vii~~~~~~~~~--~~---~~r~S~Ga~~------~v-~v~~~~~l~~~l~~Lk~~-G--~~i~a 238 (357)
+=-|.|+|..||+++.+++.|-..... .. -.....|+.. -+ -+..++++++++++..+. | -.+++
T Consensus 30 lHDIAR~~rTYgv~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~ 109 (185)
T PF09936_consen 30 LHDIARSARTYGVKGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVA 109 (185)
T ss_dssp HHHHHHHHHHTT-SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE
T ss_pred HHhhhhhhhccCCcCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEE
Confidence 345899999999999999976321110 11 1123334321 01 244568999999998663 4 46888
Q ss_pred EeeC--CCceeeccc-----CCCCCEEEEEcCCCCCCCHHHHhhCCcEE-EECCCCCCCcccHHHHHHHHHHHH
Q 018365 239 THVG--MDAISVYDM-----DWSCPTAIVVGNENRGVSDEALSLSDLRC-SIPMKGMVDSFNVSVAAGILMHHA 304 (357)
Q Consensus 239 t~~~--~~s~~l~~~-----~~~~~~aLVfGnE~~GLs~e~l~~cD~~v-~IPm~g~v~SLNVSvAaaI~Lye~ 304 (357)
|+.. .+..++.++ .-..|+.|+||. ++||.+|+++.||.++ -|-..|.+.=|.|=.|+||+|=-+
T Consensus 110 TsAr~~~~~is~~~lr~~l~~~~~P~LllFGT-GwGL~~ev~~~~D~iLePI~g~~~YNHLSVRsAvAIiLDRL 182 (185)
T PF09936_consen 110 TSARKYPNTISYAELRRMLEEEDRPVLLLFGT-GWGLAPEVMEQCDYILEPIRGAGDYNHLSVRSAVAIILDRL 182 (185)
T ss_dssp --SS--SS-B-HHHHHHHHHH--S-EEEEE---TT---HHHHTT-SEEB--TTTTSS-----HHHHHHHHHHHH
T ss_pred ecCcCCCCCcCHHHHHHHHhccCCeEEEEecC-CCCCCHHHHHhcCeeEcccccCCCCccchHHHHHHHHHHHH
Confidence 8765 233444333 246799999997 6999999999999865 344456788899999999998544
No 19
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=97.95 E-value=4.3e-05 Score=66.38 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=96.5
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcc-cc--hhhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEE
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSK-RY--RENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRI 236 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~-~~--~~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i 236 (357)
.+++++.++..++-+=-+.|.+..||++.+++.+..... .. +.+.|-+--. -.|+...+++.|+++-|+.. .+
T Consensus 2 ev~vvlHN~~S~~rv~e~ariaygfg~k~lV~tka~g~AAQsGIp~~~kla~k~--G~~vlvf~dL~DAlevL~P~--v~ 77 (147)
T COG4080 2 EVIVVLHNVSSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQSGIPEVLKLAFKL--GKPVLVFPDLDDALEVLRPD--VT 77 (147)
T ss_pred cEEEEEecCCchHHHHHHHHHHcccCccEEEEEecccHhhhhccHHHHHHHHHh--CCcEEEehhHHHHHHhcCCc--eE
Confidence 478999999999999999999999999999877643211 11 1222222111 15888889999999999864 33
Q ss_pred EEEeeCCCceeecccCC----CCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 237 ATTHVGMDAISVYDMDW----SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 237 ~at~~~~~s~~l~~~~~----~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
+..... +..-..+++ .+++++||+.=..|+++..+++-+...+| ..+.+.++ -++||+||++.+
T Consensus 78 ll~~~~--~~~ek~~dp~e~ie~~vliVf~ga~~gl~k~El~lg~~~~y~-ve~~VG~~---g~lAi~Lyell~ 145 (147)
T COG4080 78 LLVGSA--SEGEKKLDPNEKIEGRVLIVFSGAEPGLTKRELELGADLRYI-VEADVGEL---GALAIFLYELLK 145 (147)
T ss_pred EEecCc--ccccccCCccccccceEEEEEecCCCCcChhhcccCCcEEEE-EeccchHH---HHHHHHHHHHHc
Confidence 333111 112223333 45899999999999999999988888888 55566554 478999999863
No 20
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.33 E-value=0.045 Score=49.01 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=80.6
Q ss_pred HHHHHHHhCCceEEEeCCCCcccchhhh--hhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEEeeCCCceeecccC--
Q 018365 177 TFRSADALGVQSVHVVSCDSSKRYRENR--HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMD-- 252 (357)
Q Consensus 177 IlRtA~afGv~~Vii~~~~~~~~~~~~~--r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~-- 252 (357)
++-||.|||++++++...+.....+.+. -..-|+.|.+. ...|+...+++.++ |=.++.++.-+ ..+.++.
T Consensus 23 V~LtARAfGA~gil~~~e~De~v~esv~dVv~rwGG~F~v~--~~~nw~~~i~~wk~-gG~vvHLTMYG--~~i~dv~~e 97 (179)
T COG1303 23 VALTARAFGADGILLDGEEDEKVVESVEDVVERWGGPFFVK--FGVNWRKVIREWKE-GGIVVHLTMYG--LNIDDVIDE 97 (179)
T ss_pred hhhhhHhhCCceEEEcCcccHHHHHHHHHHHHhcCCCEEEE--EcccHHHHHHHhhc-CCEEEEEEecC--CcchhhhHH
Confidence 4568999999999766443222222222 23567776554 45689999999998 65677777653 3454443
Q ss_pred --CCC-CEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 253 --WSC-PTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 253 --~~~-~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
-.+ ...+|+|.|. ++.++-++||..|.|---+.-+ -.|.||+|--++.
T Consensus 98 i~~~~k~~lvvVGaeK--Vp~evYelADyNV~VgnQPHSE----VaaLAvFLDRl~~ 148 (179)
T COG1303 98 IRESKKDVLVVVGAEK--VPGEVYELADYNVSVGNQPHSE----VAALAVFLDRLFE 148 (179)
T ss_pred HHhcCCcEEEEEcccc--CCHHHhhhcccceecCCCccHH----HHHHHHHHHHHhC
Confidence 223 3789999997 9999999999999886543322 2467788877764
No 21
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=96.05 E-value=0.00015 Score=55.76 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=34.6
Q ss_pred CCcHHHHHHhh-cCCcchhhhhhcccccccCCCcchhhhhhccCCccccccccCCCeeeCcHHHHHhcCCCcc
Q 018365 72 TPSKDNVEKLL-TNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLM 143 (357)
Q Consensus 72 ~~g~~av~all-~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~~~~~~~~~~~~~~~~~~~~qgv~~~l~~~~~ 143 (357)
.||.|+|++++ .+++ |.++|++++..+.++. +.++.+. +...+ .+.++..++.++++...
T Consensus 2 ieG~~~V~eaL~~~~~-i~~l~~~~~~~~~~~~-~i~~~~~-~~~i~---------v~~v~~~~l~~ls~~~~ 62 (76)
T PF08032_consen 2 IEGRHAVEEALKSGPR-IKKLFVTEEKADKRIK-EILKLAK-KKGIP---------VYEVSKKVLDKLSDTEN 62 (76)
T ss_dssp EESHHHHHHHHHCTGG-EEEEEEETT---CCTH-HHHHHHH-HCT-E---------EEEE-HHHHHHCTTTSS
T ss_pred EEEHHHHHHHHcCCCC-ccEEEEEcCccchhHH-HHHHHHH-HcCCe---------EEEeCHHHHHHHcCCCC
Confidence 48999999999 5556 9999999995553443 2333332 22221 34455556666655444
No 22
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=95.97 E-value=0.21 Score=50.00 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=80.0
Q ss_pred HHHHHHHhCCceEEEeCCCCcccchhh--hhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEEeeCCCceeecc----
Q 018365 177 TFRSADALGVQSVHVVSCDSSKRYREN--RHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYD---- 250 (357)
Q Consensus 177 IlRtA~afGv~~Vii~~~~~~~~~~~~--~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~---- 250 (357)
+.-||.|||++++++...+ ......+ .-..-|+.|++.. ..++...++.. .| .|+.++.-+ .++.+
T Consensus 21 v~l~ara~ga~~~~~~~~d-~~~~~~~~~v~~~~gg~f~~~~--~~~~~~~~~~~--~g-~vvhltmyg--~~~~~~~~~ 92 (339)
T PRK12703 21 VALTARAFGASSILVDERD-ETLENTIKKVVDNFGGSFEIKT--GIEWKSEFKKF--HG-IRVHLTMYG--RPIEDVIDE 92 (339)
T ss_pred HHHHHHHhcCCeeEecCCc-HhHHHHHHHHHHhcCCCeEEEe--ccCHHHHHHhc--CC-EEEEEecCC--CchHHHHHH
Confidence 5568899999998765431 1122222 2345688887654 46777777666 35 888888754 23333
Q ss_pred cC-CCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 251 MD-WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 251 ~~-~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
+. ...+..+|+|.|. ++.++-+.||..|.|---+.-+ ..|.||+|..++.
T Consensus 93 i~~~~~~~~~vvg~~k--vp~~~y~~ad~nv~v~~qphse----vaala~fld~~~~ 143 (339)
T PRK12703 93 IRESGKDVMVLVGSEK--VPIEAYEIADYNVSVTNQPISE----VSALAIFLDRYFD 143 (339)
T ss_pred HhccCCCEEEEECCCc--CCHHHHhhcccceeeCCCChHH----HHHHHHHHHHhcc
Confidence 33 3468999999997 9999999999999996544433 3578899988874
No 23
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=94.65 E-value=0.22 Score=41.88 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=60.8
Q ss_pred eeeeeCChHHHHHHHHhCCcEEEEEeeCCC-ceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEEC-CCCCCCccc
Q 018365 215 DIELWDAPRECFNVLRSRGYRIATTHVGMD-AISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIP-MKGMVDSFN 292 (357)
Q Consensus 215 ~v~~~~~l~~~l~~Lk~~G~~i~at~~~~~-s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IP-m~g~v~SLN 292 (357)
++....++.|+++-|+ ...|+..+.... ...+..+...++++|||+....|.|+..++.-+. ++|. +...+.+
T Consensus 21 ~livlpdl~DAiEvl~--p~~V~~i~~~~~~~~~~~~~~~~~rvllVf~G~d~gfsk~El~~g~~-v~~~~v~~~iG~-- 95 (106)
T PF09895_consen 21 SLIVLPDLKDAIEVLK--PDVVYLISRSGEEEEKLEFLKIEGRVLLVFSGSDPGFSKIELELGEA-VYIRGVERDIGP-- 95 (106)
T ss_pred cEEEeCCHHHHHHhcC--CcEEEEEcCcccccccccccCcCCcEEEEEeCCCCCCChhHhcCCce-EEeeccCcCcCh--
Confidence 5667789999999997 457777776432 2333456678899999999999999999999655 6653 3334444
Q ss_pred HHHHHHHHHHHH
Q 018365 293 VSVAAGILMHHA 304 (357)
Q Consensus 293 VSvAaaI~Lye~ 304 (357)
--.+||+||++
T Consensus 96 -~g~~ai~Ly~L 106 (106)
T PF09895_consen 96 -IGEAAIILYEL 106 (106)
T ss_pred -HHHHHHHHhcC
Confidence 35678888864
No 24
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=89.80 E-value=0.78 Score=39.26 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=55.1
Q ss_pred CCceeeeeeeeCChHHHHHHHHhCCcEEEEEeeCCCceeeccc----C-CCCCEEEEEcCCCCCCCHHHHhhCCcEEEEC
Q 018365 209 GAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDM----D-WSCPTAIVVGNENRGVSDEALSLSDLRCSIP 283 (357)
Q Consensus 209 Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~----~-~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IP 283 (357)
|+.|.+ ....++...++..|+.|..++.+++-+ .++.+. . -..+..+|+|.|. ++.++-+.||..|.|-
T Consensus 2 GG~F~v--e~~~~w~~~i~~wK~~~G~VVHLTMYG--~~i~dvi~~Ir~~~~~~lvVVGaeK--VP~evYe~ADyNVaVg 75 (120)
T PF01994_consen 2 GGDFEV--EYGVSWKSYIREWKEKGGKVVHLTMYG--ENIDDVIDEIRESCKDLLVVVGAEK--VPGEVYELADYNVAVG 75 (120)
T ss_dssp -S--EE--EEES-HHHHHHC----SSEEEEE-TTS--EEHHHCHHHHHHCTSEEEEEE-SS-----CCHHHHSSEEEESS
T ss_pred CCCEEE--EECCCHHHHHHHhcccCCeEEEEEecC--CchHHHHHHHhccCCCEEEEECCCc--CCHHHHhhCCcceeeC
Confidence 445544 355789999999999999999999864 445444 3 4567999999997 9999999999999986
Q ss_pred CCCCCCcccHHHHHHHHHHHHHH
Q 018365 284 MKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 284 m~g~v~SLNVSvAaaI~Lye~~r 306 (357)
--+.-+ ..|.||+|..++.
T Consensus 76 nQPHSE----VAALAvFLDrl~~ 94 (120)
T PF01994_consen 76 NQPHSE----VAALAVFLDRLFE 94 (120)
T ss_dssp SS---H----HHHHHHHHHHHCT
T ss_pred CCChHH----HHHHHHHHHHhcC
Confidence 544433 3577888888764
No 25
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.04 E-value=0.6 Score=41.67 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=84.7
Q ss_pred cHHHHHHHHHHhCCceEEEeCCCCccc--ch---hhhhhcCCCcee------eeeeee-CChHHHHHHHH-hCCc--EEE
Q 018365 173 NVSATFRSADALGVQSVHVVSCDSSKR--YR---ENRHVSMGAEKW------LDIELW-DAPRECFNVLR-SRGY--RIA 237 (357)
Q Consensus 173 NlGaIlRtA~afGv~~Vii~~~~~~~~--~~---~~~r~S~Ga~~~------v~v~~~-~~l~~~l~~Lk-~~G~--~i~ 237 (357)
.+--|.|+|..+.+++..++.+-.... .. ...+...|...- +.++.. .++++.+++.. .+|- -|+
T Consensus 30 D~HDIaR~artYeikgYyiV~pidAQ~~~~~r~i~yW~~g~G~~yNp~R~e~~~lv~l~~~le~ViEdIEk~eG~rPLi~ 109 (190)
T COG4752 30 DLHDIARPARTYEIKGYYIVQPIDAQRIVIQRQINYWLSGEGRKYNPTRYEIVQLVRLAYTLEEVIEDIEKEEGRRPLIV 109 (190)
T ss_pred cHhhhcccccceeeccEEEEeecHHHHHHHHHHHHHHhcccCCcCCcCHHHHHHHHhHHHHHHHHHHHHHhhcCCCceEE
Confidence 466789999999999998886532211 01 122344444321 122211 24566666664 3464 367
Q ss_pred EEeeCC--Cceeeccc-----CCCCCEEEEEcCCCCCCCHHHHhhCCcEE-EECCCCCCCcccHHHHHHHHHHHHH
Q 018365 238 TTHVGM--DAISVYDM-----DWSCPTAIVVGNENRGVSDEALSLSDLRC-SIPMKGMVDSFNVSVAAGILMHHAV 305 (357)
Q Consensus 238 at~~~~--~s~~l~~~-----~~~~~~aLVfGnE~~GLs~e~l~~cD~~v-~IPm~g~v~SLNVSvAaaI~Lye~~ 305 (357)
+|+... ++.++... .-.++..++||. |+||++++++..|.++ -|-..+...-|.|-.|+||+|-.++
T Consensus 110 ~TsAr~~~N~isy~~lr~~I~e~dkp~LilfGT-GwGlpde~m~~sDYiLEPIra~sd~NHLSVRaAvAIIlDRLf 184 (190)
T COG4752 110 GTSARTYPNTISYSWLRNEIQERDKPWLILFGT-GWGLPDELMNTSDYILEPIRAASDWNHLSVRAAVAIILDRLF 184 (190)
T ss_pred eccccccCCcccHHHHHHHHhhcCCcEEEEecC-CCCCCHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHHh
Confidence 776531 22333222 225678899996 6999999999999976 4556778899999999999998776
No 26
>PRK02135 hypothetical protein; Provisional
Probab=86.57 E-value=1.7 Score=40.46 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=65.0
Q ss_pred CChHHHHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhC----CcEEEECCCCCCCcccHHH
Q 018365 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLS----DLRCSIPMKGMVDSFNVSV 295 (357)
Q Consensus 220 ~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~c----D~~v~IPm~g~v~SLNVSv 295 (357)
.++++.++++ .+|+++|-++..+ .++.+..+++..++|+| ...|++++..+.- +..++| .-.+|=.++
T Consensus 114 ~~fe~ll~~~-~e~~~l~~L~e~G--~~i~~~~~~~~~~FvLg-DH~~~~~ee~~~L~~~ga~~iSl----GP~~l~Ash 185 (201)
T PRK02135 114 RGFEDLLEEL-AEGKTLYYLHEDG--EDIRDVEFPENPVFVLG-DHIGFTEEEENLLKRLGAEKISL----GPKMLHADH 185 (201)
T ss_pred CCHHHHHHHH-hcCCcEEEEeCCC--CchhhccCCCCCEEEEe-CCCCCCHHHHHHHHHhCCeEEEe----CcHHHHHHH
Confidence 7889999999 7899999999765 67888888888889999 7799999877644 455666 247899999
Q ss_pred HHHHHHHHHHH
Q 018365 296 AAGILMHHAVC 306 (357)
Q Consensus 296 AaaI~Lye~~r 306 (357)
+..++-+++-+
T Consensus 186 cI~~vhn~LD~ 196 (201)
T PRK02135 186 CITLIHNELDR 196 (201)
T ss_pred HHHHHHHHHhh
Confidence 99999999854
No 27
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=81.67 E-value=0.33 Score=46.77 Aligned_cols=51 Identities=27% Similarity=0.190 Sum_probs=42.4
Q ss_pred CCCCEEEEEcCCCCCCCHHHHhh---CCcEEEECCCC-CCCcccHHHHHHHHHHHH
Q 018365 253 WSCPTAIVVGNENRGVSDEALSL---SDLRCSIPMKG-MVDSFNVSVAAGILMHHA 304 (357)
Q Consensus 253 ~~~~~aLVfGnE~~GLs~e~l~~---cD~~v~IPm~g-~v~SLNVSvAaaI~Lye~ 304 (357)
+..++.++-||+ .++|+...+. |+..+.|+.++ ..+||||++|+||.++..
T Consensus 136 g~~~v~lv~~n~-s~lS~~vskss~gale~l~I~q~~~~~efl~vsvaaG~~l~~t 190 (271)
T KOG0838|consen 136 GADGVLLVKGNS-SPLSPVVSKSSAGALEVLPIRQVDNPLEFLNVSVAAGIRLHGT 190 (271)
T ss_pred cCCceEEEeccC-CCCchhHHHhhhchhheeeHHHcCCHHHHHHHHHhCceEEEEe
Confidence 455788999999 8888887764 57889999975 689999999999988773
No 28
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=81.45 E-value=6.9 Score=36.48 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=67.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCC-Cc-ccc--------hhhhhhc-----CCCceeee-eeeeCChHHH
Q 018365 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SS-KRY--------RENRHVS-----MGAEKWLD-IELWDAPREC 225 (357)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~-~~-~~~--------~~~~r~S-----~Ga~~~v~-v~~~~~l~~~ 225 (357)
+.++-.+-.+..+--+++-|.-+||+.++.+... +. ..+ ....+.. .....++| +....++.++
T Consensus 63 i~L~~al~K~~~~d~il~katELGv~~i~p~~s~rsv~k~~~~~~~~k~~R~~~i~~eA~kQs~r~~~P~i~~~~~l~~~ 142 (225)
T PF04452_consen 63 ITLAQALPKGDRMDWILQKATELGVSRIIPVISERSVVKSDGKKSDKKLERWQRIAIEAAKQSGRTRLPEIEPPISLKEL 142 (225)
T ss_dssp EEEEEE--STTHHHHHHHHHHHTT-SEEEEEE-TTSSS---HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHH
T ss_pred EEEEEEEEcCccHHHHHHHHHhcCCCEEEEEEeeeeeeeccchhhHHHHHHHHHHHHHHHHhcCCCccceeeccccHHHH
Confidence 5666788888999999999999999999877533 31 110 0111111 12233455 5555788888
Q ss_pred HHHHHhCCcEEEEEeeCCCceeecccC--CCC----CEEEEEcCCCCCCCHHHHhhCCc--EEEECCCCCCCcccHHHHH
Q 018365 226 FNVLRSRGYRIATTHVGMDAISVYDMD--WSC----PTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMVDSFNVSVAA 297 (357)
Q Consensus 226 l~~Lk~~G~~i~at~~~~~s~~l~~~~--~~~----~~aLVfGnE~~GLs~e~l~~cD~--~v~IPm~g~v~SLNVSvAa 297 (357)
++....... +..+..+. ..+..+. ... ++++++|.|| |.|++.++..-. ...+.+.+. -|=.-.|+
T Consensus 143 l~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~~~~~g~~~vsLG~~--ILR~ETAa 216 (225)
T PF04452_consen 143 LEDIPDEDL--LILDEDEE-PSLSSLSEILNSEKSFSIAIIIGPEG-GFSEEEIEFLKEAGFQPVSLGPR--ILRTETAA 216 (225)
T ss_dssp HHHSSECSE--EEE-TTTT-CBGGGCSHTTSCHHC-EEEEEE--TT----HHHHHHHHHCTEEEEB-SSS-----HHHHH
T ss_pred hhccccCCE--EEEccccc-ccccchhhhhhcccCCcEEEEECCCC-CCCHHHHHHHHHCCCEEEEcCCC--EEehHHHH
Confidence 887765544 34443321 2222222 112 8899999996 999998886533 344444332 24444444
Q ss_pred HHHH
Q 018365 298 GILM 301 (357)
Q Consensus 298 aI~L 301 (357)
-.++
T Consensus 217 i~al 220 (225)
T PF04452_consen 217 IAAL 220 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 29
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=76.78 E-value=21 Score=33.76 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=68.6
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCC-Ccccc--------h---h-hhhhc-CCCceeee-eeeeCChHHHH
Q 018365 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKRY--------R---E-NRHVS-MGAEKWLD-IELWDAPRECF 226 (357)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~-~~~~~--------~---~-~~r~S-~Ga~~~v~-v~~~~~l~~~l 226 (357)
+.++-.+-.+..+=-|++-|--+||+.++.+... +...+ . + +..++ .....++| +....++.+++
T Consensus 78 i~l~~al~K~~~~d~il~katELGv~~i~p~~s~rs~~~~~~~~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~~~~l~~~l 157 (240)
T TIGR00046 78 IHLAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIEAIKKLERWQKIAIEAAEQSGRNIVPEIKPPKNLKEKC 157 (240)
T ss_pred EEEEEeecCCccHHHHHHHHHHcCCCEEEEEEeccceeccCchHHHHHHHHHHHHHHHHHhcCCCCCCEECCcCCHHHHH
Confidence 3455566788999999999999999999877432 21111 1 1 11122 12234566 44446777776
Q ss_pred HHHHhCCcEEEEEeeCCCceeecccC-CCCCEEEEEcCCCCCCCHHHHhhCCc--EEEECCC
Q 018365 227 NVLRSRGYRIATTHVGMDAISVYDMD-WSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMK 285 (357)
Q Consensus 227 ~~Lk~~G~~i~at~~~~~s~~l~~~~-~~~~~aLVfGnE~~GLs~e~l~~cD~--~v~IPm~ 285 (357)
+.....+..++. +.+. ......+. ..+++++++|.|| |.+++.++.+.. ...+.+.
T Consensus 158 ~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~v~~~IGPEG-Gfs~~Ei~~~~~~gf~~vsLG 216 (240)
T TIGR00046 158 AEAYEEALKLNF-HPEA-SPLSANLPIPAGNIVIIIGPEG-GFSEKEIQLLKEKGFTPVLLG 216 (240)
T ss_pred hhCcCCCeEEEE-CCcc-cchhhhhccCCCcEEEEECCCC-CCCHHHHHHHHHCCCEEEccC
Confidence 654322222333 2221 11111221 1246999999996 999999887643 2444443
No 30
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.18 E-value=7.8 Score=37.13 Aligned_cols=123 Identities=11% Similarity=0.160 Sum_probs=73.9
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCC-Cccc-c-------hhhhhhcCCC-----ceeee-eeeeCChHHH
Q 018365 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKR-Y-------RENRHVSMGA-----EKWLD-IELWDAPREC 225 (357)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~-~~~~-~-------~~~~r~S~Ga-----~~~v~-v~~~~~l~~~ 225 (357)
-+-+.-.+-.+.++=.|++-|.-+|+..++.+... +.-. . ....+.+..| ..++| |....++.++
T Consensus 79 ~i~l~~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~kler~~ki~ieAaEQs~R~~vP~I~~~~~~~~~ 158 (246)
T COG1385 79 KITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAAKLERWQKIAIEAAEQSGRNVVPEIKPPESLKEL 158 (246)
T ss_pred eEEEEEEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEeccccchhHHHHHHHHHHHHHHhcCCCcCCeeechhhHHHH
Confidence 34566788899999999999999999999766422 1111 1 1112222222 23455 5555677777
Q ss_pred HHHHHhCCc-EEEEEeeCCCceeeccc-----CCCCCEEEEEcCCCCCCCHHHHhhCCc--EEEECCCC
Q 018365 226 FNVLRSRGY-RIATTHVGMDAISVYDM-----DWSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKG 286 (357)
Q Consensus 226 l~~Lk~~G~-~i~at~~~~~s~~l~~~-----~~~~~~aLVfGnE~~GLs~e~l~~cD~--~v~IPm~g 286 (357)
++......+ .++..+... ...... ...++++|++|.|| |+|++.++..-. ...|...+
T Consensus 159 l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~iiIGPEG-Gfs~~Ei~~l~~~g~~~v~LGp 224 (246)
T COG1385 159 LKEIDDEDALKLIYEEKAK--EGLLALPLLEALPEGKVLLIIGPEG-GFSEDEIELLREAGFTPVSLGP 224 (246)
T ss_pred HHhcccchhhhheeccccc--cccccchhhhcccCCcEEEEECCCC-CCCHHHHHHHHHCCCeEeccCC
Confidence 777764332 233333222 122222 35689999999996 999998876532 34555543
No 31
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=76.12 E-value=25 Score=33.06 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=61.5
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCC-Ccccc---------h---h-hhhhcC-CCceeee-eeeeCChHHH
Q 018365 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKRY---------R---E-NRHVSM-GAEKWLD-IELWDAPREC 225 (357)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~-~~~~~---------~---~-~~r~S~-Ga~~~v~-v~~~~~l~~~ 225 (357)
+.++-.+-.+..+--+++-|.-+||+.++.+... +...+ . + +..++. ...-|+| +....++.++
T Consensus 76 l~l~~al~k~~~~e~il~k~tELGV~~i~p~~sers~~~~~~~~~~~k~~r~~~i~~~A~~Qs~r~~~P~i~~~~~~~~~ 155 (234)
T PRK11713 76 LTLAQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEVRPPISLKEF 155 (234)
T ss_pred EEEEEeecCCccHHHHHHHHHHhCcCeEEEEEeccceecccchhhHHHHHHHHHHHHHHHHhcCCCCCCEEcCcCCHHHH
Confidence 3344456788999999999999999999887432 11110 1 1 111221 2234566 4444677776
Q ss_pred HHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCC
Q 018365 226 FNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSD 277 (357)
Q Consensus 226 l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD 277 (357)
++...... + .. .....+.. .-.+++++++|.|| |.+++.++...
T Consensus 156 l~~~~~~~--~--~~--~~~~~l~~-~~~~~i~viIGPEG-Gfs~~Ei~~l~ 199 (234)
T PRK11713 156 LEELLPAD--L--KA--GLKLVLHP-EAGGKVLLLIGPEG-GFSPEEIELLR 199 (234)
T ss_pred Hhhccccc--c--ch--hhhhhcCc-CCCCeEEEEECCCC-CCCHHHHHHHH
Confidence 66543211 1 00 00111111 12246899999996 99999887653
No 32
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=75.14 E-value=11 Score=34.17 Aligned_cols=127 Identities=13% Similarity=0.181 Sum_probs=77.4
Q ss_pred cHH-HHHHHHHHhCCceEEEeCCCCcccch--hhh--------------hhcCCCc-eeeeeeeeCChHHHHHHHHhCCc
Q 018365 173 NVS-ATFRSADALGVQSVHVVSCDSSKRYR--ENR--------------HVSMGAE-KWLDIELWDAPRECFNVLRSRGY 234 (357)
Q Consensus 173 NlG-aIlRtA~afGv~~Vii~~~~~~~~~~--~~~--------------r~S~Ga~-~~v~v~~~~~l~~~l~~Lk~~G~ 234 (357)
|+| .|-|.+.+|++..+++......+-+. ... +-|-|-. ..+|+..+ ++=..+.+ ..|-
T Consensus 18 ~mGerIGRaaQ~FEV~eLiiap~~~vda~eL~~Fl~gV~~G~eSRy~iQ~ksY~r~v~kvpV~V~-DlYQ~vRd--R~~~ 94 (173)
T PF14419_consen 18 KMGERIGRAAQAFEVKELIIAPKEKVDAYELMEFLRGVREGQESRYQIQRKSYGREVRKVPVYVQ-DLYQVVRD--RKGE 94 (173)
T ss_pred HHHHHHhHHHhhcchheEEEeccCccCHHHHHHHHHHHHHhHHHHHHHHHHhcCCeeeEeeeeHH-HHHHHHHh--cCCC
Confidence 444 36799999999999776554444332 111 2344443 45777665 33344444 2577
Q ss_pred EEEEEeeCCCceeeccc--------CCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 018365 235 RIATTHVGMDAISVYDM--------DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (357)
Q Consensus 235 ~i~at~~~~~s~~l~~~--------~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~ 305 (357)
.++.|++.++ ++.++ .....+.+++|+- .|++.-+...||.++-+--+=.+..=-+.-|+.|+|+..+
T Consensus 95 ~lIvtdPkG~--~is~vk~~L~~~~r~~~eV~v~iGSR-eGiP~GlfRfAd~VvDlaP~~t~aTe~~ipsaliAl~~v~ 170 (173)
T PF14419_consen 95 PLIVTDPKGD--PISEVKDKLAEDLRYAKEVVVFIGSR-EGIPRGLFRFADYVVDLAPGVTFATEHAIPSALIALWTVY 170 (173)
T ss_pred eEEEECCCCC--cHHHHHHHHHHHHhhCcEEEEEEEcc-cCCChhHHHHhhhhhhcCCceEEeehhhhHHHHHHHHHHH
Confidence 8999998764 33333 3445677888875 7999999999999875532212222334445556666654
No 33
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=74.94 E-value=4.9 Score=30.15 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=21.5
Q ss_pred HhhhhhcCC-CCCCCHHHHHHHHHHHHHhhcCchHHHHHHHHhhccc
Q 018365 306 CDRATRLGC-NGDLTSEEKQILLAEFSLRHSKSAISIVHEYAKRKET 351 (357)
Q Consensus 306 rqr~~~~~~-~~~ls~eE~~~ll~~~~~r~~~~~~~i~~~~~~~~~~ 351 (357)
|||...+-+ ...|++++.+.++++|. ..++..++++++-
T Consensus 1 RQR~~AGmY~~~~L~~e~~~~lLFEw~-------yP~lA~~cr~kg~ 40 (57)
T PF12105_consen 1 RQRQAAGMYDRPRLSEEEYQRLLFEWG-------YPVLAKWCRRKGL 40 (57)
T ss_dssp HHHHHTTTTSS-SS-HHHHHHHHHHHH-------HHHH---------
T ss_pred ChhhhcCCCCCCCcCHHHHHHHHHccc-------CHHHHhhcccccc
Confidence 466554332 45899999999999996 8888888888863
No 34
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=73.34 E-value=16 Score=34.17 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=55.7
Q ss_pred CChHHHHHHHHhCCcEEEEEeeCCCceeecccCCCC-CEEEEEcCCCCCCCHHHHhhC----CcEEEECCCCCCCcccHH
Q 018365 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSC-PTAIVVGNENRGVSDEALSLS----DLRCSIPMKGMVDSFNVS 294 (357)
Q Consensus 220 ~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~-~~aLVfGnE~~GLs~e~l~~c----D~~v~IPm~g~v~SLNVS 294 (357)
.++++.++.+++. ++++-++-.+ .++.++.++. ..++|+|- ..|++++..+.- +..|+|- -.||=.+
T Consensus 113 ~~fe~ll~~~~~~-~~l~~L~e~G--~di~~~~~~~~d~~FVLgD-H~g~~~eee~~L~~~~a~kiSlG----P~~lhAd 184 (199)
T PF04013_consen 113 GGFEDLLEELAEE-YPLYYLHEDG--EDIRDVEFPGNDPVFVLGD-HIGFTEEEEELLERLGAEKISLG----PKSLHAD 184 (199)
T ss_dssp --HHHHHHHHHCT-SEEEEESTTS--EEGGGS---S-SEEEEEE--TT-SHHHHHHHHHCTTSEEEES-----SS---HH
T ss_pred CCHHHHHHHHhcC-CcEEEEcCCC--CcHhhcccCCCCCeEEEeC-CCCCCHHHHHHHHHccCceEEeC----CHHHHHH
Confidence 6889999999877 8999998654 7899999998 89999994 589998765543 5556653 3789999
Q ss_pred HHHHHHHHHHHH
Q 018365 295 VAAGILMHHAVC 306 (357)
Q Consensus 295 vAaaI~Lye~~r 306 (357)
++..|+-+|+-+
T Consensus 185 hcI~ivhn~LD~ 196 (199)
T PF04013_consen 185 HCITIVHNELDR 196 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 35
>PF04407 DUF531: Protein of unknown function (DUF531); InterPro: IPR007501 This is a family of hypothetical archaeal proteins.
Probab=73.28 E-value=51 Score=29.90 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHH
Q 018365 255 CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHA 304 (357)
Q Consensus 255 ~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~ 304 (357)
.+..|++|==.+||+.++.+.+...+-|- |.-=||--..|.|++-..+
T Consensus 120 ~s~~~liGLGR~GLPkei~k~a~yHLDIT--gkgiSLETCTAiG~Ipa~i 167 (173)
T PF04407_consen 120 KSFLLLIGLGRHGLPKEIFKMAKYHLDIT--GKGISLETCTAIGAIPARI 167 (173)
T ss_pred CceEEEEecCCCCCcHHHHHhchhceeec--CCceeeehhhHHhhHHHHH
Confidence 46889999999999999999999988887 6777999999998875444
No 36
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=59.78 E-value=41 Score=31.09 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=65.9
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchh----------------------hhhhcCCCceeeeee
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRE----------------------NRHVSMGAEKWLDIE 217 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~----------------------~~r~S~Ga~~~v~v~ 217 (357)
..++.+| .|+.=+..+-|.|+.||++++.++....+..... ..+...|+.--++..
T Consensus 59 ~~v~AIe--~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 59 GRVIAIE--RDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred ceEEEEe--cCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence 3456666 5777888999999999999999887543322111 012234555566777
Q ss_pred eeCChHHHHHHHHhCCc-EEEEEeeCCCceeec---ccCCCCCEEEEEcC
Q 018365 218 LWDAPRECFNVLRSRGY-RIATTHVGMDAISVY---DMDWSCPTAIVVGN 263 (357)
Q Consensus 218 ~~~~l~~~l~~Lk~~G~-~i~at~~~~~s~~l~---~~~~~~~~aLVfGn 263 (357)
...+...+++.+++.|+ .++-..... +..+. -+....|+.++.|.
T Consensus 137 tlE~~~~a~~~~~~~g~~ei~~v~is~-~~~lg~~~~~~~~nPv~i~~g~ 185 (187)
T COG2242 137 TLETLAKALEALEQLGGREIVQVQISR-GKPLGGGTMFRPVNPVFIISGV 185 (187)
T ss_pred cHHHHHHHHHHHHHcCCceEEEEEeec-ceeccCeeEeecCCCEEEEEEe
Confidence 77888999999999999 555554432 23332 23345678777664
No 37
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=52.20 E-value=38 Score=29.36 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHHHhhhh
Q 018365 292 NVSVAAGILMHHAVCDRAT 310 (357)
Q Consensus 292 NVSvAaaI~Lye~~rqr~~ 310 (357)
=-+||+++++||.+|+..+
T Consensus 84 iF~Va~~li~~E~~Rs~~k 102 (134)
T PF07047_consen 84 IFSVAAGLIIYEYWRSARK 102 (134)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3459999999999986654
No 38
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=40.75 E-value=86 Score=26.14 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=34.2
Q ss_pred ccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEE
Q 018365 159 YSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIAT 238 (357)
Q Consensus 159 ~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~a 238 (357)
.+++++. ..|..+..+++-|.+.|++.+++... ..-.++++.+++.|.++++
T Consensus 56 iDlavv~---~~~~~~~~~v~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 56 IDLAVVC---VPPDKVPEIVDEAAALGVKAVWLQPG-------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp -SEEEE----S-HHHHHHHHHHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-EEEE
T ss_pred CCEEEEE---cCHHHHHHHHHHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCEEEe
Confidence 3556655 67889999999999999999977642 3345677777778877765
No 39
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=36.13 E-value=31 Score=34.25 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCCCCcHHHHH--HHHHHhCCceEEEeCCCCcccchhhhhhc
Q 018365 168 LSDFGNVSATF--RSADALGVQSVHVVSCDSSKRYRENRHVS 207 (357)
Q Consensus 168 i~dP~NlGaIl--RtA~afGv~~Vii~~~~~~~~~~~~~r~S 207 (357)
-+++.|+|+|+ |.|.++||.+. |++|-.+|......|.|
T Consensus 103 G~haSnLGaiiA~~ia~~~gvPay-IVDPvvVDEm~~~Ar~S 143 (358)
T COG3426 103 GEHASNLGAIIANRIAKALGVPAY-IVDPVVVDEMEDVARFS 143 (358)
T ss_pred CcchhhhhHHHHHHHhhhcCCCee-eeCceehhhcchhhhhc
Confidence 47899999997 88999999987 57787777665555544
No 40
>COG2106 Uncharacterized conserved protein [Function unknown]
Probab=35.65 E-value=38 Score=33.11 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHhCCceEEEeCCCC
Q 018365 172 GNVSATFRSADALGVQSVHVVSCDS 196 (357)
Q Consensus 172 ~NlGaIlRtA~afGv~~Vii~~~~~ 196 (357)
.=+|-|+|+|+-|||+.|++.....
T Consensus 26 ~Kvg~IARaaaiF~V~eIii~~D~~ 50 (272)
T COG2106 26 YKVGQIARAAAIFRVDEIIIYEDGD 50 (272)
T ss_pred HHHHHHHHHHHhhcccEEEEEeCCC
Confidence 4589999999999999999986543
No 41
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.11 E-value=2.6e+02 Score=21.67 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=37.8
Q ss_pred EEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCC----hHHHHHHHHhCCcEEEE
Q 018365 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDA----PRECFNVLRSRGYRIAT 238 (357)
Q Consensus 163 vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~----l~~~l~~Lk~~G~~i~a 238 (357)
+.+.=+..||++..++..-...++..+. |.. ...+.....=.+.+.+ ..+.++.|++.||++.-
T Consensus 4 l~v~ipD~PG~L~~ll~~l~~anI~~~~---------y~~---~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIGPRNITEFN---------YRY---ADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEecCCCCcHHHHHHHHhCCCceeEEE---------EEc---cCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 3444456799999888866633333221 111 1112222222234445 88999999999998875
Q ss_pred Eee
Q 018365 239 THV 241 (357)
Q Consensus 239 t~~ 241 (357)
.+.
T Consensus 72 ~~~ 74 (85)
T cd04906 72 LSD 74 (85)
T ss_pred CCC
Confidence 543
No 42
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=28.94 E-value=1.2e+02 Score=24.88 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=36.1
Q ss_pred ChHHHHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHh-----hCCcEEEECCCCC
Q 018365 221 APRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALS-----LSDLRCSIPMKGM 287 (357)
Q Consensus 221 ~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~-----~cD~~v~IPm~g~ 287 (357)
.+.+..+.|.+.||++++|... +.-|.+.-.+-..+.-+...+.+-.+.+++ ..|.++.+|..+.
T Consensus 14 ~~~~~a~~l~~~G~~i~aT~gT--a~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~~~ 83 (116)
T cd01423 14 ELLPTAQKLSKLGYKLYATEGT--ADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRG 83 (116)
T ss_pred hHHHHHHHHHHCCCEEEEccHH--HHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCCCC
Confidence 4567788889999999998754 333443333222222121112221244333 5678888887554
No 43
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.27 E-value=2.3e+02 Score=20.45 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=38.9
Q ss_pred EEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEE
Q 018365 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRI 236 (357)
Q Consensus 163 vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i 236 (357)
+-+.-...||++..+++..+..|+.=.-+.. .. ... . ..| ...+-+..-.+.+.+.+.|++.||.+
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~---~~-~~~--~-~~~-~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEI---LE-IRE--G-IGG-ILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEe---EE-eec--C-CcE-EEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 4556667899999999999999986332211 00 000 0 011 11121111146678999999999964
No 44
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=27.62 E-value=2.8e+02 Score=24.95 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeC
Q 018365 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193 (357)
Q Consensus 149 ~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~ 193 (357)
.+++.++.....+.++.+.-.|+...-..++.+-.-|+++|++..
T Consensus 19 g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~ 63 (257)
T PF13407_consen 19 GAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSP 63 (257)
T ss_dssp HHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEES
T ss_pred HHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecC
Confidence 445555544444444468999999999999999999999997653
No 45
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=26.99 E-value=61 Score=27.51 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=43.2
Q ss_pred CCCCcHHHHHHHHH---HhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEEee-CCC
Q 018365 169 SDFGNVSATFRSAD---ALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHV-GMD 244 (357)
Q Consensus 169 ~dP~NlGaIlRtA~---afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~~-~~~ 244 (357)
|.-+|+|.=++.|. .-|.+.|+++..+++.........+.-....-+++..+. ..-||..+|+.. -..
T Consensus 40 Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~~~L~~~d~VlgPa--------~DGGy~LiG~~~~~~~ 111 (122)
T PF09837_consen 40 QQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAFEALQRHDVVLGPA--------EDGGYYLIGLRRRPDP 111 (122)
T ss_dssp --SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHTTT-SEEEEEB--------TTSSEEEEEEEGGG--
T ss_pred cCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHhccCCEEEeec--------cCCCEEEEecCCCCCC
Confidence 68899998666554 346889999998888776655555555555446555543 456999999984 211
Q ss_pred ceeecccCC
Q 018365 245 AISVYDMDW 253 (357)
Q Consensus 245 s~~l~~~~~ 253 (357)
...+.+++|
T Consensus 112 ~~lF~~i~W 120 (122)
T PF09837_consen 112 PALFEGIPW 120 (122)
T ss_dssp GGGGTT--T
T ss_pred HHHccCCCC
Confidence 234555555
No 46
>COG4678 Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism]
Probab=26.97 E-value=1.6e+02 Score=26.99 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=43.4
Q ss_pred EEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHH--HHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHh
Q 018365 257 TAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGI--LMHHAVCDRATRLGCNGDLTSEEKQILLAEFSLR 333 (357)
Q Consensus 257 ~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI--~Lye~~rqr~~~~~~~~~ls~eE~~~ll~~~~~r 333 (357)
.+||+| |+-.+.-++-..+|+||+.+. =+-|.|+|= +|--.+....++... -+++++-|+.+.-+|+.+
T Consensus 56 ~vLvgg----~~f~D~S~HP~~~v~i~~~~n---g~cSTAAGrYQ~L~~tW~~~~~~l~l-~dF~P~~QD~va~~~i~d 126 (180)
T COG4678 56 DVLVGG----QLFTDLSDHPRKCVTIPTGPN---GLCSTAAGRYQLLNRTWDDYAPQLHL-KDFSPESQDAVAYRWIRD 126 (180)
T ss_pred eEEEcC----ceechhhhCChhhEEeecCCC---CccccchhhHHHHHhHHHHhhhhcCc-ccCChhhhhHHHHHHHHh
Confidence 445555 355666666677899999765 455677763 222222222222222 458999999999999977
No 47
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.60 E-value=2.4e+02 Score=19.75 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=37.3
Q ss_pred ecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEE
Q 018365 166 EGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIA 237 (357)
Q Consensus 166 d~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~ 237 (357)
.=...||.+..++.....+|+.=..+.. ... . ..| ...+ .++.++.+++++.|+++||.++
T Consensus 5 ~~~d~pG~L~~i~~~l~~~~~nI~~i~~--~~~------~-~~~-~~~v-~~~ve~~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 5 EVPDKPGGLHEILQILSEEGINIEYMYA--FVE------K-KGG-KALL-IFRTEDIEKAIEVLQERGVELV 65 (65)
T ss_pred EeCCCCcHHHHHHHHHHHCCCChhheEE--Ecc------C-CCC-eEEE-EEEeCCHHHHHHHHHHCCceEC
Confidence 3345699999999988888886322211 000 0 011 1112 3344568899999999999863
No 48
>PRK04171 ribosome biogenesis protein; Provisional
Probab=24.89 E-value=2.4e+02 Score=26.76 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=50.3
Q ss_pred cEEEEEeeCCCceeecccC-CCCCEEEEEcCCCCC-CCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHH
Q 018365 234 YRIATTHVGMDAISVYDMD-WSCPTAIVVGNENRG-VSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHA 304 (357)
Q Consensus 234 ~~i~at~~~~~s~~l~~~~-~~~~~aLVfGnE~~G-Ls~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~ 304 (357)
.++++++..+....+.++- ...++++|+|.=.+| .+.+..+.+|..++|-- .+|-.+++++-+++++
T Consensus 147 ~~~i~lS~~g~~~~~~~~~~~~~~~~~vIGaf~hG~f~~~~~~~~~~~iSIs~----~pLsa~~v~~ri~~a~ 215 (222)
T PRK04171 147 DRIILLSEKGELVKPKELGKENENIAVGIGGFPHGDFSEKVLELAKKKYSIYG----EPLTAWTVVCRVIAAY 215 (222)
T ss_pred CcEEEECCCCcccCHHHHhhccCCcEEEEccccCCCcchhhHhhcCeEEEEeC----CChHHHHHHHHHHHHH
Confidence 6788888766555554443 367899999998888 46667888999999974 5777788888777766
No 49
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=24.63 E-value=2.4e+02 Score=25.07 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=44.1
Q ss_pred CCCCcHHHHHHHHHHhCCceEEEe--C----CCCcccchhhhhhcCCCceeeee-eeeCChHHHHHHHHhCCcEEEEEee
Q 018365 169 SDFGNVSATFRSADALGVQSVHVV--S----CDSSKRYRENRHVSMGAEKWLDI-ELWDAPRECFNVLRSRGYRIATTHV 241 (357)
Q Consensus 169 ~dP~NlGaIlRtA~afGv~~Vii~--~----~~~~~~~~~~~r~S~Ga~~~v~v-~~~~~l~~~l~~Lk~~G~~i~at~~ 241 (357)
-|+.|+...++.+...|++.|++. + +........+.....-....+.+ +.+.+..+.++.+.+.|...+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~ 87 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHP 87 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEcc
Confidence 367899999999999999999984 1 11111111122222111111212 3445777889999988877665654
Q ss_pred C
Q 018365 242 G 242 (357)
Q Consensus 242 ~ 242 (357)
.
T Consensus 88 ~ 88 (210)
T TIGR01163 88 E 88 (210)
T ss_pred C
Confidence 3
No 50
>PF02598 Methyltrn_RNA_3: Putative RNA methyltransferase; InterPro: IPR003750 This entry describes proteins of unknown function.; PDB: 1K3R_B.
Probab=24.12 E-value=62 Score=31.78 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCceEEEeCC
Q 018365 174 VSATFRSADALGVQSVHVVSC 194 (357)
Q Consensus 174 lGaIlRtA~afGv~~Vii~~~ 194 (357)
+|-|+|+|+-|+|+.|+|.+.
T Consensus 24 ~gqIARaaaiF~VdEIvVydd 44 (291)
T PF02598_consen 24 AGQIARAAAIFRVDEIVVYDD 44 (291)
T ss_dssp HHHHHHHHHHTT--EEEEEE-
T ss_pred HHHHHHHHHeecCcEEEEEcc
Confidence 588999999999999988865
No 51
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=23.19 E-value=2.8e+02 Score=26.72 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=57.1
Q ss_pred HHHHHHhCCceEEEeC---CCCcccc--hhhhhh--cCCCceeeeeeeeCChHHHHHHHHhCCcEEEEEeeCCCceeecc
Q 018365 178 FRSADALGVQSVHVVS---CDSSKRY--RENRHV--SMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYD 250 (357)
Q Consensus 178 lRtA~afGv~~Vii~~---~~~~~~~--~~~~r~--S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~ 250 (357)
++.+.-.|+++|++-- .+..|.. ++.... .++-.||.-+-.+.|..+++++|-+.|+.-+-|+.+. ...+..
T Consensus 79 I~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~-~sa~eg 157 (241)
T COG3142 79 IRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK-ASALEG 157 (241)
T ss_pred HHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc-Cchhhh
Confidence 5788999999996542 1122211 233333 3344566555566789999999999999988888764 233333
Q ss_pred cCC--------CCCEEEEEcCCCCCCCHHHHh
Q 018365 251 MDW--------SCPTAIVVGNENRGVSDEALS 274 (357)
Q Consensus 251 ~~~--------~~~~aLVfGnE~~GLs~e~l~ 274 (357)
++. .++..|+.| -|++.+-++
T Consensus 158 ~~~l~~li~~a~gri~Im~G---aGV~~~N~~ 186 (241)
T COG3142 158 LDLLKRLIEQAKGRIIIMAG---AGVRAENIA 186 (241)
T ss_pred HHHHHHHHHHhcCCEEEEeC---CCCCHHHHH
Confidence 321 255666665 466665544
No 52
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=23.10 E-value=3.6e+02 Score=23.96 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=43.4
Q ss_pred cEEEEEeeCCCceeecccCC---------C-CCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHH
Q 018365 234 YRIATTHVGMDAISVYDMDW---------S-CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHH 303 (357)
Q Consensus 234 ~~i~at~~~~~s~~l~~~~~---------~-~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye 303 (357)
-.+++++..+. .+.+..| . ..+++|+|.= .|+++++++.||..+++-- -.++=-.|--|++=+
T Consensus 66 ~~~i~LDe~Gk--~~sS~~fA~~l~~~~~~g~~i~FvIGGa-~G~~~~v~~~a~~~lSLS~----mTfpH~larlvL~EQ 138 (153)
T TIGR00246 66 AHVVTLDIPGK--PWTTPQLADTLEKWKTDGRDVTLLIGGP-EGLSPTCKAAAEQSWSLSK----LTLPHPLVRVIVAES 138 (153)
T ss_pred CeEEEEcCCCC--cCCHHHHHHHHHHHhccCCeEEEEEcCC-CcCCHHHHHhcCceEEeec----CCCcHHHHHHHHHHH
Confidence 35777777653 3333221 2 3589999965 7999999999999887642 124444566666666
Q ss_pred HHH
Q 018365 304 AVC 306 (357)
Q Consensus 304 ~~r 306 (357)
++|
T Consensus 139 iYR 141 (153)
T TIGR00246 139 LYR 141 (153)
T ss_pred HHH
Confidence 766
No 53
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=23.09 E-value=79 Score=28.13 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=37.0
Q ss_pred CCcEEEEEeeCCCceeecccCC-----------CCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHH
Q 018365 232 RGYRIATTHVGMDAISVYDMDW-----------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGIL 300 (357)
Q Consensus 232 ~G~~i~at~~~~~s~~l~~~~~-----------~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~ 300 (357)
.+..+++++..+ ..+.+..| ...++|++|.= .|+++++++.||..+++-- -.+.=-.|--|+
T Consensus 66 ~~~~~i~Ld~~G--k~~sS~~fA~~l~~~~~~g~~~i~F~IGG~-~G~~~~~~~~a~~~lSLS~----mTfpH~larlvL 138 (155)
T PF02590_consen 66 PNDYVILLDERG--KQLSSEEFAKKLERWMNQGKSDIVFIIGGA-DGLSEEVRKRADEKLSLSK----MTFPHQLARLVL 138 (155)
T ss_dssp TTSEEEEE-TTS--EE--HHHHHHHHHHHHHTTS-EEEEEE-BT-TB--HHHHHH-SEEEES-S----S---HHHHHHHH
T ss_pred CCCEEEEEcCCC--ccCChHHHHHHHHHHHhcCCceEEEEEecC-CCCCHHHHhhcCceEEEec----CCCcHHHHHHHH
Confidence 466778888765 34444332 23688999865 5999999999998877642 123334455566
Q ss_pred HHHHHH
Q 018365 301 MHHAVC 306 (357)
Q Consensus 301 Lye~~r 306 (357)
+=+++|
T Consensus 139 ~EQiYR 144 (155)
T PF02590_consen 139 LEQIYR 144 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 54
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=21.63 E-value=5.9e+02 Score=22.79 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeC
Q 018365 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193 (357)
Q Consensus 148 ~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~ 193 (357)
+.+.+.+++....+ ++++.-.|+...-.+++....-|+++|++..
T Consensus 19 ~gi~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 63 (265)
T cd06299 19 TAIQDAASAAGYST-IIGNSDENPETENRYLDNLLSQRVDGIIVVP 63 (265)
T ss_pred HHHHHHHHHcCCEE-EEEeCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 45666665544433 3444445777777889999999999997754
No 55
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=20.89 E-value=5.3e+02 Score=22.95 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=45.4
Q ss_pred CcEEEEEeeCCCceeecccCC---------C--CCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHH
Q 018365 233 GYRIATTHVGMDAISVYDMDW---------S--CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (357)
Q Consensus 233 G~~i~at~~~~~s~~l~~~~~---------~--~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~L 301 (357)
+-.+++++..+. .+.+..| . +.+++|+|.= .|+++++++.||..+++-- -.++=-.|--|++
T Consensus 67 ~~~~i~LDe~Gk--~~sS~~fA~~l~~~~~~g~~~i~F~IGGa-~G~~~~v~~~a~~~lSLS~----mTfpH~larlvL~ 139 (157)
T PRK00103 67 GARVIALDERGK--QLSSEEFAQELERWRDDGRSDVAFVIGGA-DGLSPAVKKRADQSLSLSK----LTLPHQLVRVLLA 139 (157)
T ss_pred CCEEEEEcCCCC--cCCHHHHHHHHHHHHhcCCccEEEEEcCc-cccCHHHHHhcCceEEecc----CCCcHHHHHHHHH
Confidence 345778877653 3333322 2 3689999965 7999999999999887632 1345556667777
Q ss_pred HHHHH
Q 018365 302 HHAVC 306 (357)
Q Consensus 302 ye~~r 306 (357)
=+++|
T Consensus 140 EQlYR 144 (157)
T PRK00103 140 EQLYR 144 (157)
T ss_pred HHHHH
Confidence 77776
No 56
>PF14044 NETI: NETI protein
Probab=20.41 E-value=87 Score=23.53 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=19.3
Q ss_pred eeeeCChHHHHHHHHhCCcEEEEE
Q 018365 216 IELWDAPRECFNVLRSRGYRIATT 239 (357)
Q Consensus 216 v~~~~~l~~~l~~Lk~~G~~i~at 239 (357)
+....++++||+.+++.||..+.-
T Consensus 4 V~enETI~~CL~RM~~eGY~PvrR 27 (57)
T PF14044_consen 4 VEENETISDCLARMKKEGYMPVRR 27 (57)
T ss_pred ccCCCcHHHHHHHHHHcCCCceee
Confidence 445578999999999999976654
No 57
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=20.36 E-value=1.2e+02 Score=26.94 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEEeeCCCceeec
Q 018365 170 DFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVY 249 (357)
Q Consensus 170 dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~ 249 (357)
...--|++.+.|+..|+.- .|+..|+.... -...+.+|++.+++++....+.+ +.-
T Consensus 52 SgDr~gsl~~lae~~gi~~---------------~rv~a~a~~e~-------K~~ii~eLkk~~~k~vmVGnGaN--D~l 107 (152)
T COG4087 52 SGDRKGSLVQLAEFVGIPV---------------ERVFAGADPEM-------KAKIIRELKKRYEKVVMVGNGAN--DIL 107 (152)
T ss_pred cCCcchHHHHHHHHcCCce---------------eeeecccCHHH-------HHHHHHHhcCCCcEEEEecCCcc--hHH
Confidence 4455799999999999652 14555655322 23678899999999988865432 221
Q ss_pred ccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEE
Q 018365 250 DMDWSCPTAIVVGNENRGVSDEALSLSDLRCS 281 (357)
Q Consensus 250 ~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~ 281 (357)
-+.-..=-+.++|+| |.++.++..+|..++
T Consensus 108 aLr~ADlGI~tiq~e--~v~~r~l~~ADvvik 137 (152)
T COG4087 108 ALREADLGICTIQQE--GVPERLLLTADVVLK 137 (152)
T ss_pred HhhhcccceEEeccC--CcchHHHhhchhhhh
Confidence 122222245789995 799999999998654
Done!