Query 018365
Match_columns 357
No_of_seqs 276 out of 1863
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2x_A TRNA (GM18) methyltrans 100.0 2.4E-45 8.2E-50 334.1 18.4 188 144-333 6-194 (194)
2 1gz0_A Hypothetical tRNA/RRNA 100.0 4.4E-46 1.5E-50 351.9 13.2 235 71-308 14-252 (253)
3 3nk6_A 23S rRNA methyltransfer 100.0 2.6E-45 9E-50 350.9 12.5 229 71-310 36-269 (277)
4 1zjr_A TRNA (guanosine-2'-O-)- 100.0 9.7E-44 3.3E-48 327.6 20.7 193 139-332 4-197 (211)
5 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 1.1E-44 3.9E-49 346.0 6.2 229 71-310 30-263 (274)
6 1x7o_A Avirb, rRNA methyltrans 100.0 1.2E-43 3.9E-48 341.0 9.9 229 71-309 42-279 (287)
7 2i6d_A RNA methyltransferase, 100.0 1.5E-43 5.3E-48 335.2 9.2 219 71-308 29-257 (257)
8 3e5y_A TRMH family RNA methylt 100.0 1.3E-40 4.3E-45 294.4 12.1 149 159-309 4-155 (160)
9 2ha8_A TAR (HIV-1) RNA loop bi 100.0 9.2E-40 3.2E-44 295.0 13.9 156 155-312 21-179 (184)
10 3n4j_A RNA methyltransferase; 100.0 7.7E-40 2.6E-44 290.9 13.1 149 160-310 4-158 (165)
11 3l8u_A SMU.1707C, putative rRN 100.0 7.6E-39 2.6E-43 289.0 13.9 156 150-310 7-167 (182)
12 3kty_A Probable methyltransfer 100.0 1.5E-37 5.3E-42 277.5 11.5 146 159-308 9-172 (173)
13 3ilk_A Uncharacterized tRNA/RR 100.0 3E-35 1E-39 276.6 14.5 165 160-330 7-190 (244)
14 3onp_A TRNA/RRNA methyltransfe 100.0 3.5E-35 1.2E-39 276.9 11.0 165 160-330 4-190 (249)
15 3ic6_A Putative methylase fami 100.0 2.5E-34 8.6E-39 266.8 10.8 167 160-330 17-220 (223)
16 3dcm_X AdoMet, uncharacterized 99.8 2.8E-18 9.4E-23 155.6 11.1 145 160-306 4-185 (192)
17 2yy8_A ATRM56, UPF0106 protein 95.8 0.041 1.4E-06 49.3 9.2 117 177-306 21-147 (201)
18 2o3a_A UPF0106 protein AF_0751 95.8 0.028 9.7E-07 49.4 8.0 114 177-305 24-143 (178)
19 2qmm_A UPF0217 protein AF_1056 93.1 0.63 2.1E-05 41.9 10.3 80 220-307 112-195 (197)
20 3aia_A UPF0217 protein MJ1640; 91.2 1.9 6.5E-05 39.2 11.2 80 220-307 123-206 (211)
21 2qwv_A UPF0217 protein VC_A105 86.6 1.3 4.6E-05 40.1 6.7 79 220-306 121-203 (208)
22 1vhk_A Hypothetical protein YQ 85.7 4.6 0.00016 37.6 10.2 124 162-286 83-231 (268)
23 3kw2_A Probable R-RNA methyltr 84.7 4 0.00014 37.9 9.1 126 160-286 78-223 (257)
24 4e8b_A Ribosomal RNA small sub 66.9 18 0.00062 33.1 8.2 135 162-302 80-233 (251)
25 1vhy_A Hypothetical protein HI 58.3 23 0.00077 32.6 7.1 119 163-285 83-221 (257)
26 1ns5_A Hypothetical protein YB 57.0 5.9 0.0002 34.1 2.7 72 226-306 61-142 (155)
27 1z85_A Hypothetical protein TM 54.5 4.3 0.00015 37.2 1.4 132 162-303 87-226 (234)
28 4fak_A Ribosomal RNA large sub 53.9 8.4 0.00029 33.5 3.2 67 233-306 74-151 (163)
29 1v6z_A Hypothetical protein TT 53.4 21 0.00072 32.2 5.9 134 162-304 73-222 (228)
30 2egv_A UPF0088 protein AQ_165; 49.5 13 0.00044 33.7 3.8 135 163-304 74-226 (229)
31 1to0_A Hypothetical UPF0247 pr 44.4 13 0.00043 32.4 2.8 67 233-306 70-147 (167)
32 1o6d_A Hypothetical UPF0247 pr 43.4 13 0.00043 32.4 2.6 67 233-306 65-141 (163)
33 3j1r_A Archaeal adhesion filam 39.1 20 0.00069 21.7 2.2 13 293-305 13-25 (26)
34 3ib6_A Uncharacterized protein 36.0 59 0.002 27.1 5.8 50 216-265 33-88 (189)
35 1k3r_A Conserved protein MT000 26.5 41 0.0014 31.4 3.2 21 174-194 28-48 (268)
36 3sgz_A Hydroxyacid oxidase 2; 23.5 1.8E+02 0.0063 27.9 7.4 75 166-242 80-157 (352)
37 1y66_A Engrailed homeodomain; 23.3 68 0.0023 21.8 3.0 31 320-350 5-35 (52)
38 3jy6_A Transcriptional regulat 20.6 4E+02 0.014 22.8 8.8 46 148-194 27-72 (276)
39 2i2w_A Phosphoheptose isomeras 20.3 1E+02 0.0034 26.6 4.4 22 221-242 146-167 (212)
No 1
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00 E-value=2.4e-45 Score=334.08 Aligned_cols=188 Identities=33% Similarity=0.489 Sum_probs=167.5
Q ss_pred hhhHHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChH
Q 018365 144 EERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPR 223 (357)
Q Consensus 144 ~~r~~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~ 223 (357)
+.|...++++++.+..+++||||+|+||+|+|+|+|||++||+++|+++.+... .+++.|+|+|+.+|+|+..+.|+.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~--~~~~~r~s~Ga~~~l~~~~~~~l~ 83 (194)
T 1v2x_A 6 EARRRRIEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGG--VPTFNETSGGSHKWVYLRVHPDLH 83 (194)
T ss_dssp CCHHHHHHHHHTTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGG--SCCCCSSCSSGGGTSEEEEESSHH
T ss_pred hhhHhhHHHHHhcCCCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCC--chhhHHHCCCChheeeeEecCCHH
Confidence 345677888888777789999999999999999999999999999999876432 256789999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHH
Q 018365 224 ECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHH 303 (357)
Q Consensus 224 ~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye 303 (357)
++++.|+++||++++++...++.++.+++++++++||||||+.||++++++.||.+|+|||.|.++|||||+|+||+|||
T Consensus 84 ~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvs~AaaI~lye 163 (194)
T 1v2x_A 84 EAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFE 163 (194)
T ss_dssp HHHHHHHHTTCEEEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEecCCCCccHhHcccCCCeEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCceeHHHHHHHHHHH
Confidence 99999999999999999765678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCC-CCCCCHHHHHHHHHHHHHh
Q 018365 304 AVCDRATRLGC-NGDLTSEEKQILLAEFSLR 333 (357)
Q Consensus 304 ~~rqr~~~~~~-~~~ls~eE~~~ll~~~~~r 333 (357)
++||+...... .+.++++|++.++.+|++|
T Consensus 164 ~~rq~~~~~~~~~~~~~~~e~~~l~~~~~~~ 194 (194)
T 1v2x_A 164 AQRQRLKAGLYDRPRLDPELYQKVLADWLRK 194 (194)
T ss_dssp HHHHHHHHTGGGSCCSCHHHHHHHHHHC---
T ss_pred HHHHhcccCCcCCCCCCHHHHHHHHHHHhhC
Confidence 99987654332 4789999999999999864
No 2
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=4.4e-46 Score=351.85 Aligned_cols=235 Identities=22% Similarity=0.250 Sum_probs=188.1
Q ss_pred CCCcHHHHHHhh-cCCcchhhhhhcccccccCCCcchhhhhhc-cCCccccccccCCC--eeeCcHHHHHhcCCCcchhh
Q 018365 71 DTPSKDNVEKLL-TNPDDVTQFMKMERSCMVNDGVGSMESLSN-KRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEER 146 (357)
Q Consensus 71 ~~~g~~av~all-~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~-~~~~~~~~~~~~~~--~~~~~qgv~~~l~~~~~~~r 146 (357)
-.||.|+|++++ .+++.|.++|++++..+.++. +.+..... +..+..+++..++. ....|||+++.+.+.....
T Consensus 14 ~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~~~-~l~~~~~~~~i~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~- 91 (253)
T 1gz0_A 14 MIYGIHAVQALLERAPERFQEVFILKGREDKRLL-PLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQ- 91 (253)
T ss_dssp EEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTH-HHHHHHHHHTCEEEEECSHHHHHTTTSCCCTTEEEEECCCCCCC-
T ss_pred EEEEHHHHHHHHhcCCCCeEEEEEECCccchhHH-HHHHHHHHCCCcEEEeCHHHHHHHhCCCCCcEEEEEEeccccCc-
Confidence 469999999999 566789999999875542232 22222111 12223344443333 3457899999887654310
Q ss_pred HHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHH
Q 018365 147 KERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECF 226 (357)
Q Consensus 147 ~~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l 226 (357)
...+.++++.+..+++||||+|+||+|+|+|+|||++||+++|++..+++++.++++.|+|+|+.+|+|+..+.|+.+++
T Consensus 92 ~~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l 171 (253)
T 1gz0_A 92 ENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTM 171 (253)
T ss_dssp GGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCCCCCCCHHHHhhhcchheEEEEEEeCCHHHHH
Confidence 01244454444457899999999999999999999999999998876655555668999999999999999999999999
Q ss_pred HHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 227 NVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 227 ~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
+.|++.||++++++..+ +.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|||++|
T Consensus 172 ~~l~~~g~~i~~~~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~r 250 (253)
T 1gz0_A 172 RMLQEENIWIVGTAGEA-DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 250 (253)
T ss_dssp HHHHHTTCEEEEECTTC-SEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEECCC-CcchhhccCCCCEEEEECCCCcCcCHHHHHhCCEEEEECCCCCCCceeHHHHHHHHHHHHHH
Confidence 99999999999999654 57899999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 018365 307 DR 308 (357)
Q Consensus 307 qr 308 (357)
||
T Consensus 251 q~ 252 (253)
T 1gz0_A 251 QR 252 (253)
T ss_dssp HT
T ss_pred hh
Confidence 75
No 3
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=2.6e-45 Score=350.90 Aligned_cols=229 Identities=19% Similarity=0.183 Sum_probs=183.0
Q ss_pred CCCcHHHHHHhhcCCcchhhhhhcccccccCCCcchhhhhh-ccCCccccccccCCC--eeeCcHHHHHhcCCCcchhhH
Q 018365 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLS-NKRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEERK 147 (357)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA-~~~~~~~~~~~~~~~--~~~~~qgv~~~l~~~~~~~r~ 147 (357)
-.||.|+|+++|.....|.++|++++..+ . . +.+..+. .+..+..+++..++. ....|||+++.+......
T Consensus 36 lveG~~~V~eaL~~~~~i~~l~~~~~~~~-~-~-~l~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~--- 109 (277)
T 3nk6_A 36 LIEDTEPLMECIRAGVQFIEVYGSSGTPL-D-P-ALLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPA--- 109 (277)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTSCC-C-H-HHHHHHHHTTCCEEEECHHHHTTCC-----CCEEEEEECCCCC---
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEeCCccC-c-H-HHHHHHHhcCCcEEEECHHHHHHhhCCCCCCeEEEEEecCCCC---
Confidence 56999999999966668999999987655 2 2 2333221 122233455544544 345789999888655222
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCccc-chhhhhhcCCCceeeeeeeeCChHHHH
Q 018365 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKR-YRENRHVSMGAEKWLDIELWDAPRECF 226 (357)
Q Consensus 148 ~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~-~~~~~r~S~Ga~~~v~v~~~~~l~~~l 226 (357)
.+.+++... .+ +||||+|+||+|+|+|+|||++||+++|++.+.++.++ ++++.|+|+|+.+|+|+..+ |+.+++
T Consensus 110 -~l~~~~~~~-~~-~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~-~l~~~l 185 (277)
T 3nk6_A 110 -RLADIAERG-GD-VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLA-DREEAV 185 (277)
T ss_dssp -CHHHHHHHC-SC-EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEEC-CHHHHH
T ss_pred -CHHHHhccC-CC-EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEE-CHHHHH
Confidence 234444332 34 89999999999999999999999999998887344444 56899999999999999999 999999
Q ss_pred HHHHhCCcEEEEEeeCCCceeecc-cCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 018365 227 NVLRSRGYRIATTHVGMDAISVYD-MDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (357)
Q Consensus 227 ~~Lk~~G~~i~at~~~~~s~~l~~-~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~ 305 (357)
+.|++.||++++++..+ +.++++ ++++++++||||||+.||++++++.||..|+|||.|.++|||||||+||+|||++
T Consensus 186 ~~lk~~g~~v~~~~~~~-~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~ 264 (277)
T 3nk6_A 186 SFLRDNDIALMVLDTDG-DLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERS 264 (277)
T ss_dssp HHHHHTTCCEEEECTTC-SEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCSSTTCCCCHHHHHHHHHHHTH
T ss_pred HHHHhcCCeEEEEecCC-CcchhhhhccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999875 678999 9999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q 018365 306 CDRAT 310 (357)
Q Consensus 306 rqr~~ 310 (357)
|||..
T Consensus 265 rq~~~ 269 (277)
T 3nk6_A 265 ARNFA 269 (277)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 98764
No 4
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=9.7e-44 Score=327.60 Aligned_cols=193 Identities=31% Similarity=0.496 Sum_probs=170.9
Q ss_pred CCCcchhhHHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeee
Q 018365 139 SPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIEL 218 (357)
Q Consensus 139 ~~~~~~~r~~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~ 218 (357)
.++..+.|...++++++.+..+++||||+|+||+|+|+|+|||++||+++|+++.+.... .+.+.|+|+|+.+|+|+..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~-~~~~~r~s~Ga~~~l~~~~ 82 (211)
T 1zjr_A 4 EYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEK 82 (211)
T ss_dssp --CHHHHHHHHHHHHHTTCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEE
T ss_pred ccccChhhHhhHHHHHhccCCCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCc-hHHHHHHcCCCcccceeEe
Confidence 345566778889999987777899999999999999999999999999999998765332 2245699999999999999
Q ss_pred eCChHHHHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHH
Q 018365 219 WDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAG 298 (357)
Q Consensus 219 ~~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaa 298 (357)
+.|+.++++.|++.||++++++...++.++++++++++++||||||+.||++++++.||.+|+|||.|.++|||||+|+|
T Consensus 83 ~~~l~~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~d~~v~IPm~g~~~SLNvsvAaa 162 (211)
T 1zjr_A 83 VDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATG 162 (211)
T ss_dssp CSCHHHHHHHHHHTTCEEEEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHH
T ss_pred cCCHHHHHHHHHHCCCEEEEEecCCCCcchhhcccCCCEEEEECCcccCCCHHHHHhCCcEEEeCCCCCCCeEEHHHHHH
Confidence 99999999999999999999997656788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCC-CCCCCHHHHHHHHHHHHH
Q 018365 299 ILMHHAVCDRATRLGC-NGDLTSEEKQILLAEFSL 332 (357)
Q Consensus 299 I~Lye~~rqr~~~~~~-~~~ls~eE~~~ll~~~~~ 332 (357)
|+|||++||+...... .+.++++|++.|+.+|..
T Consensus 163 I~lye~~rq~~~~~~~~~~~~~~~e~~~l~~~~~~ 197 (211)
T 1zjr_A 163 IILYEAQRQREEKGMYSRPSLSEEEIQKILKKWAY 197 (211)
T ss_dssp HHHHHHHHHHHHTTTTSSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCccCCCCCCHHHHHHHHHHHHH
Confidence 9999999887543332 367999999999999963
No 5
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=1.1e-44 Score=345.98 Aligned_cols=229 Identities=21% Similarity=0.203 Sum_probs=177.8
Q ss_pred CCCcHHHHHHhhcCCcchhhhhhcccccccCCCcchhhhhhccC---CccccccccCCC--eeeCcHHHHHhcCCCcchh
Q 018365 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKR---WFPYLDRYKCGD--VYLSSSEVVEALSPYLMEE 145 (357)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~~~---~~~~~~~~~~~~--~~~~~qgv~~~l~~~~~~~ 145 (357)
-.||.|+|++++.....|.++|++++..+..+. +.+. ++... .+..+++..++. ....|||+++.+......
T Consensus 30 ~veG~~~v~eal~~~~~i~~l~~~~~~~~~~~~-~l~~-~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~- 106 (274)
T 1ipa_A 30 LIEGAREIERALQAGIELEQALVWEGGLNPEEQ-QVYA-ALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERT- 106 (274)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTCCCHHHH-HHHH-CC-----CEEEEECHHHHHHHCCSSSCCSEEEEEECCCCC-
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEEcCcccchHH-HHHH-HHHhcCCccEEEeCHHHHHHHhCCCCCCeEEEEEeCCCCC-
Confidence 469999999999544579999999775431111 1221 11111 112233333332 234567777666432211
Q ss_pred hHHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHH
Q 018365 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPREC 225 (357)
Q Consensus 146 r~~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~ 225 (357)
+.+++ ....+++||||+|+||+|+|+|+|||++||+++|++..+ ++..++++.|+|+|+.+|+|+.. .|+.++
T Consensus 107 ----l~~~~-~~~~~~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~-~~~~~~~v~ras~Ga~~~l~~~~-~~l~~~ 179 (274)
T 1ipa_A 107 ----LEEYR-PSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLA-ASESEV 179 (274)
T ss_dssp ----CCCCC-CCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEE-ECHHHH
T ss_pred ----HHHHh-ccCCCeEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCC-cCcCCHHHHHHcCChhhcceeEe-CCHHHH
Confidence 11111 123458999999999999999999999999999998877 55555689999999999999998 999999
Q ss_pred HHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 018365 226 FNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (357)
Q Consensus 226 l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~ 305 (357)
++.|++.||++++++..+ +.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|||++
T Consensus 180 l~~l~~~g~~i~~~~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~ 258 (274)
T 1ipa_A 180 LDWIKQHNLPLVATTPHA-EALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEAL 258 (274)
T ss_dssp HHHHHHTTCCEEEECTTC-SSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCC-CcchhhcCCCCCEEEEECCCCcCCCHHHHHhCCeEEEECCCCCCCceeHHHHHHHHHHHHH
Confidence 999999999999999875 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q 018365 306 CDRAT 310 (357)
Q Consensus 306 rqr~~ 310 (357)
|||..
T Consensus 259 rq~~~ 263 (274)
T 1ipa_A 259 RQRLL 263 (274)
T ss_dssp HHHTC
T ss_pred Hhccc
Confidence 87654
No 6
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=1.2e-43 Score=341.05 Aligned_cols=229 Identities=21% Similarity=0.204 Sum_probs=183.2
Q ss_pred CCCcHHHHHHhhcCCcchhhhhhccccccc-CCCcchhhhhhccCCccccccccCCC--eee-CcHHHHHhcCCCcchhh
Q 018365 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMV-NDGVGSMESLSNKRWFPYLDRYKCGD--VYL-SSSEVVEALSPYLMEER 146 (357)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~-~~~~~~~~~LA~~~~~~~~~~~~~~~--~~~-~~qgv~~~l~~~~~~~r 146 (357)
-.||.|+|++++.....|.++|++++..+. .+. ++++ .+. ..+..+++..++. ... .|||+++.+......
T Consensus 42 ~veG~~~V~eal~~~~~i~~l~~~~~~~~~~~~~-~l~~-~~~-~~v~~v~~~~l~~ls~~~~~~qGv~a~~~~~~~~-- 116 (287)
T 1x7o_A 42 LVMGVRPISLAVEHGWPVRTLLYDGQRELSKWAR-ELLR-TVR-TEQIAMAPDLLMELGEKNEAPPEVVAVVEMPADD-- 116 (287)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEESSCCCCHHHH-HHHH-HSC-SEEEEECHHHHTTSSCSSSCCCSEEEEEECCCCC--
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEecCcccchhHH-HHHH-HcC-CcEEEeCHHHHHHHhCCCCCCCcEEEEEecCCCC--
Confidence 469999999999655779999998775431 111 1111 111 1222344444443 234 788888887643321
Q ss_pred HHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHH
Q 018365 147 KERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECF 226 (357)
Q Consensus 147 ~~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l 226 (357)
+++++. ...+++||||+|+||+|+|+|+|||++||+++|++..++++..++++.|+|+|+.+|+|+..+.|+.+++
T Consensus 117 ---l~~~~~-~~~~l~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~~~~d~~~~kv~ras~Ga~~~l~i~~~~~l~~~l 192 (287)
T 1x7o_A 117 ---LDRIPV-REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVM 192 (287)
T ss_dssp ---GGGSCC-CTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSHHHHHHTTTGGGTSCEEEESSHHHHH
T ss_pred ---HHHHhc-ccCCEEEEEeCCCCcchHHHHHHHhHhcccCEEEEECCCcCccCHHHHhhhcCcceeeeEEEeCCHHHHH
Confidence 222221 2246899999999999999999999999999999887665555568999999999999999999999999
Q ss_pred HHH---HhCCcE--EEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHH
Q 018365 227 NVL---RSRGYR--IATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (357)
Q Consensus 227 ~~L---k~~G~~--i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~L 301 (357)
+.| ++.||+ +++++.. ++.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|
T Consensus 193 ~~l~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~alV~GnE~~Gls~~~~~~~d~~v~IPm~g~~~SLNvavAaaI~l 271 (287)
T 1x7o_A 193 DWVEARRAAGTPIVLVGTDEH-GDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMAGSASSLNAANAATAIL 271 (287)
T ss_dssp HHHHHHHHHTCCCEEEEECTT-CSEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCSEEEECCCSSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEEEECC-CCccHhhcCCCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCceEHHHHHHHHH
Confidence 999 999999 9999987 4678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 018365 302 HHAVCDRA 309 (357)
Q Consensus 302 ye~~rqr~ 309 (357)
||++|||.
T Consensus 272 ye~~rq~~ 279 (287)
T 1x7o_A 272 YEAVRQRI 279 (287)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcc
Confidence 99998875
No 7
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.5e-43 Score=335.19 Aligned_cols=219 Identities=18% Similarity=0.199 Sum_probs=175.3
Q ss_pred CCCcHHHHHHhhcCCcchhhhhhcccccccCCCcchhhhhhccCCcccccc-ccCCC--eeeCcHHHHHhcCCCcchhhH
Q 018365 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDR-YKCGD--VYLSSSEVVEALSPYLMEERK 147 (357)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~~~~~~~~~~-~~~~~--~~~~~qgv~~~l~~~~~~~r~ 147 (357)
-.||.|+|++++.. ..|.++|++++..+ ++.+ ..+..+..+++ ..++. ....|||+++.+......
T Consensus 29 ~veG~~~v~eal~~-~~i~~l~~~~~~~~-~l~~------~~~~~v~~v~~~~~l~~ls~~~~~qGv~a~~~~~~~~--- 97 (257)
T 2i6d_A 29 AVEGPKLVGEMLPF-YRCRMLVGTAAMLR-AVST------PHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPAEP--- 97 (257)
T ss_dssp EEESHHHHHHHGGG-SCEEEEEEEHHHHH-TSCC------CTTCEEEEECTTCCGGGTCCSSSCCSEEEEEECCCCC---
T ss_pred EEEcHHHHHHHHhc-CCcCEEEEEcCchH-HHHH------hcCCCEEEeChHHHHHHHhcCCCCCeEEEEEECCCCC---
Confidence 46999999999966 78999999977544 1211 01112223455 44444 345789999887643321
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChHHHHH
Q 018365 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN 227 (357)
Q Consensus 148 ~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~~~l~ 227 (357)
+.++ .+++||||+|+||+|+|+|+|||++||+++|++..++++...+++.|+|+|+.+|+|+....|+.++++
T Consensus 98 --l~~~-----~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~v~ras~Ga~~~l~~~~~~~l~~~l~ 170 (257)
T 2i6d_A 98 --EPVV-----EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLA 170 (257)
T ss_dssp --CCCC-----CSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEECSCHHHHHH
T ss_pred --hHHh-----CCeEEEEECCCCcchHHHHHHHHHHhCCCEEEEcCCCCCcCCHHHheecCCcceeeeEEEeCCHHHHHH
Confidence 1111 258999999999999999999999999999988766555555689999999999999985599999999
Q ss_pred HHHhCCcEEEEEeeCCCceeeccc--CCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCC-----CCCCcccHHHHHHHH
Q 018365 228 VLRSRGYRIATTHVGMDAISVYDM--DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMK-----GMVDSFNVSVAAGIL 300 (357)
Q Consensus 228 ~Lk~~G~~i~at~~~~~s~~l~~~--~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~-----g~v~SLNVSvAaaI~ 300 (357)
.|++.||++++++..+ ..+++++ +++++++||||||+.||++++++.||..|+|||. |.++|||||+|+||+
T Consensus 171 ~l~~~g~~i~~~~~~~-~~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~~v~IPm~~~~~~g~~~SLNvsvAaaI~ 249 (257)
T 2i6d_A 171 YFRRQGIPVYGAFLDG-QSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAIL 249 (257)
T ss_dssp HHHHTTCCEEEEEEEE-EETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC----CCCCHHHHHHHH
T ss_pred HHHHCCCEEEEEECCC-CccHHHhhhCcCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCcCCCCCCCCChhHHHHHHHH
Confidence 9999999999999864 4678888 8999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHhh
Q 018365 301 MHHAVCDR 308 (357)
Q Consensus 301 Lye~~rqr 308 (357)
|||++||+
T Consensus 250 lye~~rq~ 257 (257)
T 2i6d_A 250 CSEWRRRS 257 (257)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99998764
No 8
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=100.00 E-value=1.3e-40 Score=294.44 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=137.3
Q ss_pred ccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccch-hhhhhcCCCceeeeeeeeCChHHHHHHHHhCCcEEE
Q 018365 159 YSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIA 237 (357)
Q Consensus 159 ~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~ 237 (357)
+.++||||+|+||+|+|+|+|||++||++.+ ++.+.+.+.++ ++.|+++|+.+|+|+.++.|+.++++.|++.||+++
T Consensus 4 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v-iv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~l~~~g~~i~ 82 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLH-LIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMF 82 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEE-EESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCCGGGEE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCcEE-EECCCCCCCccHHHHHHcCCchhhcceEEeCCHHHHHHHHHhCCCEEE
Confidence 4588999999999999999999999999755 56666666664 678999999999999999999999999999999999
Q ss_pred EEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhh--CCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhh
Q 018365 238 TTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL--SDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRA 309 (357)
Q Consensus 238 at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~--cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~rqr~ 309 (357)
+++.. ++.++++++++++++||||||+.||++++++. ||.+|+|||.|.++|||||+|++|+|||++||+.
T Consensus 83 ~~~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq~~ 155 (160)
T 3e5y_A 83 AFTTR-GSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAG 155 (160)
T ss_dssp EECST-TCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSSSCCCCHHHHHHHHHHHHHHHTT
T ss_pred EEecC-CCccccccCCCCCEEEEECCCcCCCCHHHHhhccCCeEEEEcCCCCCCeehHHHHHHHHHHHHHHhcc
Confidence 99986 46789999999999999999999999999999 9999999999999999999999999999999874
No 9
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=294.99 Aligned_cols=156 Identities=18% Similarity=0.297 Sum_probs=138.2
Q ss_pred hcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchh-hhhhcCCCceeeeeeee--CChHHHHHHHHh
Q 018365 155 KNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRE-NRHVSMGAEKWLDIELW--DAPRECFNVLRS 231 (357)
Q Consensus 155 ~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~-~~r~S~Ga~~~v~v~~~--~~l~~~l~~Lk~ 231 (357)
+++..+++||||+|+||+|+|+|+|||++||+++|++...+ ....+ ..|+|+|+.+|+|+..+ .++.++++.|++
T Consensus 21 ~~~~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~~--~~~~k~~~r~s~ga~~~l~~~~~~~~~~~~~l~~lk~ 98 (184)
T 2ha8_A 21 GKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQ--CISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKT 98 (184)
T ss_dssp CCCCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCGG--GGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHH
T ss_pred cCCCCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECCCC--CCCcccceeecCCccceEEEEEEcCCCHHHHHHHHHH
Confidence 34566789999999999999999999999999999764322 22234 45889999999999876 899999999999
Q ss_pred CCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhhh
Q 018365 232 RGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311 (357)
Q Consensus 232 ~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~rqr~~~ 311 (357)
.||++++++...++.++++++++++++||||||+.||++++++.||.+|+|||.|.++|||||+|+||+|||++||+..+
T Consensus 99 ~g~~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvavAaaI~lye~~rq~~~~ 178 (184)
T 2ha8_A 99 EGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLS 178 (184)
T ss_dssp TTCEEEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCCcchhhccCCCCEEEEECCcccCCCHHHHHhCCcEEEECCCCCCCcchHHHHHHHHHHHHHHHhhcc
Confidence 99999999987567889999999999999999999999999999999999999999999999999999999999987654
Q ss_pred c
Q 018365 312 L 312 (357)
Q Consensus 312 ~ 312 (357)
.
T Consensus 179 ~ 179 (184)
T 2ha8_A 179 H 179 (184)
T ss_dssp -
T ss_pred c
Confidence 3
No 10
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=100.00 E-value=7.7e-40 Score=290.87 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=137.3
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccch-hhhhhcCCCceeeeeeeeCChHHHHHHHHh---CCcE
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRS---RGYR 235 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~~l~~~l~~Lk~---~G~~ 235 (357)
.++||||+|+||+|+|+|+|||++||++.+ ++.+.+.++++ ++.|+++|+.+|+|+..+.|+.++++.||+ .||+
T Consensus 4 ~~~vvL~~~~dp~NlGaI~Rta~a~G~~~v-iv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~lk~~~~~g~~ 82 (165)
T 3n4j_A 4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLH-LIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPAR 82 (165)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCEEE-EESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTT
T ss_pred cEEEEEeCCCCCCcHHHHHHHHHHcCCeEE-EECCCCCCCccHHHHHhccCceeecCeEEeCCHHHHHHHHHhhccCCCE
Confidence 589999999999999999999999999755 56666666664 678999999999999999999999999998 9999
Q ss_pred EEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhh--CCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 018365 236 IATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL--SDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRAT 310 (357)
Q Consensus 236 i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~--cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~rqr~~ 310 (357)
+++++.. ++.+++++++++|++||||||+.||++++++. ||.+|+|||.|.++|||||+|+||+|||++||+..
T Consensus 83 i~~~~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvavAaaI~lye~~rq~~~ 158 (165)
T 3n4j_A 83 LFALTTK-GTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGY 158 (165)
T ss_dssp EEEECTT-CSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcC-CCcchhhccCCCCeEEEECCCCCCCCHHHHhhccCCeEEEECCCCCCceeeHHHHHHHHHHHHHHhccc
Confidence 9999975 46789999999999999999999999999999 89999999999999999999999999999998754
No 11
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=100.00 E-value=7.6e-39 Score=288.99 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=128.8
Q ss_pred HHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccch-hhhhhcCCCceeeeeeeeCChHHHHHH
Q 018365 150 FVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNV 228 (357)
Q Consensus 150 i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~~l~~~l~~ 228 (357)
++...++++.+++||||+|+||+|+|+|+|||++||++.+ ++.+.+.+.++ ++.|+++|+.+++|+..++|+.++++.
T Consensus 7 ~~~~~~~~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~v-iv~~~~~~~~~~~~~ras~g~~~~v~i~~~~~l~~~l~~ 85 (182)
T 3l8u_A 7 EKENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLH-IIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSLNDFMNI 85 (182)
T ss_dssp --------CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEE-EESCCSSCCCTTTC------CCC-CCEEEESSHHHHHHH
T ss_pred HHHHhhcCCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEE-EECCCCCCCCcHHHHHhCcChhhhCCeEEcCCHHHHHHH
Confidence 4455566778899999999999999999999999999766 56666666664 678999999999999999999999998
Q ss_pred HHhCCcEEEEEeeCCCceeecccCCCC--CEEEEEcCCCCCCCHHHHh-hCCcEEEECCCC-CCCcccHHHHHHHHHHHH
Q 018365 229 LRSRGYRIATTHVGMDAISVYDMDWSC--PTAIVVGNENRGVSDEALS-LSDLRCSIPMKG-MVDSFNVSVAAGILMHHA 304 (357)
Q Consensus 229 Lk~~G~~i~at~~~~~s~~l~~~~~~~--~~aLVfGnE~~GLs~e~l~-~cD~~v~IPm~g-~v~SLNVSvAaaI~Lye~ 304 (357)
+ ||++++++.. ++.+++++++++ +++||||||+.||++++++ .||.+|+|||.| .++|||||||+||+|||+
T Consensus 86 l---g~~i~~~~~~-~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~~v~IPm~g~~~~SLNVsvAaaI~lyE~ 161 (182)
T 3l8u_A 86 C---SGKLHLITKF-ANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEA 161 (182)
T ss_dssp C---CSEEEEECSS-CSSBGGGSCCCSSSCEEEEECBTTTBSCHHHHHHTGGGEEBCCCCTTTCSCCCHHHHHHHHHHHH
T ss_pred C---CCEEEEEEcC-CCccccccccCCCCCEEEEECCccCCCCHHHHHHhCCeEEEECCCCCCCCCEeHHHHHHHHHHHH
Confidence 8 9999999876 467899999988 9999999999999999996 999999999999 999999999999999999
Q ss_pred HHhhhh
Q 018365 305 VCDRAT 310 (357)
Q Consensus 305 ~rqr~~ 310 (357)
+|||..
T Consensus 162 ~rq~~~ 167 (182)
T 3l8u_A 162 LRQQDF 167 (182)
T ss_dssp HHHTTT
T ss_pred HHhccc
Confidence 998754
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=100.00 E-value=1.5e-37 Score=277.48 Aligned_cols=146 Identities=21% Similarity=0.213 Sum_probs=127.9
Q ss_pred ccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcc--cchhhhhhcCCCceeeeee-eeCChHHHHHHHHhCCcE
Q 018365 159 YSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSK--RYRENRHVSMGAEKWLDIE-LWDAPRECFNVLRSRGYR 235 (357)
Q Consensus 159 ~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~--~~~~~~r~S~Ga~~~v~v~-~~~~l~~~l~~Lk~~G~~ 235 (357)
.+++||||+|+||+|+|+|+|||++||+++|+++++.+.+ ..+++.|+|+|+.+++|+. .++++.++++.++ +
T Consensus 9 ~~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~r~a~Ga~~~l~~~~~~~~l~~~l~~~~----~ 84 (173)
T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT----L 84 (173)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCS----E
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHHHHcCCHHHhhchheecCCHHHHHHhCC----e
Confidence 3589999999999999999999999999999999888765 3568889999999999964 5679999988876 6
Q ss_pred EEEEeeCCC------------ceeec---ccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHH
Q 018365 236 IATTHVGMD------------AISVY---DMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGIL 300 (357)
Q Consensus 236 i~at~~~~~------------s~~l~---~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~ 300 (357)
+++++.... +..+. +.++++|++||||||+.||++++++.||..|+|||.|.++|||||+|+||+
T Consensus 85 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~d~~v~IPm~g~~~SLNvs~AaaI~ 164 (173)
T 3kty_A 85 AFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLA 164 (173)
T ss_dssp EEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCSTTCCCCHHHHHHHH
T ss_pred EEEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCeEeHHHHHHHH
Confidence 888887532 23566 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 018365 301 MHHAVCDR 308 (357)
Q Consensus 301 Lye~~rqr 308 (357)
|||++||.
T Consensus 165 lye~~r~~ 172 (173)
T 3kty_A 165 AWELRYAL 172 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998763
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=100.00 E-value=3e-35 Score=276.63 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=138.1
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeee-eeeCChHHHHHHHHhCCcEEEE
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDI-ELWDAPRECFNVLRSRGYRIAT 238 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v-~~~~~l~~~l~~Lk~~G~~i~a 238 (357)
.+.||||+++||+|+|+|+|||++||+++|+++++. ...+++.|+|+|+.++++. ..++++.+++++++ ++++
T Consensus 7 ~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~--~~~~~a~r~A~GA~~~l~~~~~~~~l~eal~~~~----~vva 80 (244)
T 3ilk_A 7 NIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAVDDCS----LVIG 80 (244)
T ss_dssp TEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCS----EEEE
T ss_pred CcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCC--CCCHHHHHHcCChhheeceeEEeCCHHHHHHhCC----eEEE
Confidence 578999999999999999999999999999999876 4556889999999988884 45689999988763 7888
Q ss_pred EeeCCCceeecc----------cCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHhh
Q 018365 239 THVGMDAISVYD----------MDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308 (357)
Q Consensus 239 t~~~~~s~~l~~----------~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~rqr 308 (357)
++.......... .++.++++||||||+.||++++++.||.+|+|||.|.++|||||+|++|+|||++||+
T Consensus 81 tt~~~~~~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~~~SLNva~A~aI~lyE~~rq~ 160 (244)
T 3ilk_A 81 TSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 160 (244)
T ss_dssp ECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred EccCCCCCCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCCCCeeeHHHHHHHHHHHHHHHh
Confidence 887543221111 2347899999999999999999999999999999999999999999999999999986
Q ss_pred hhh--------cCCCCCCCHHHHHHHHHHH
Q 018365 309 ATR--------LGCNGDLTSEEKQILLAEF 330 (357)
Q Consensus 309 ~~~--------~~~~~~ls~eE~~~ll~~~ 330 (357)
... .......+.+|.+.+..+|
T Consensus 161 ~~~~~~~~~~~~~~~~~a~~~e~e~~~~~l 190 (244)
T 3ilk_A 161 LVQNNKKNSLSLIEKNYPTTDQLAYFFDYT 190 (244)
T ss_dssp HHHHHHHHHTTC-CCCCCCHHHHHHHHHHH
T ss_pred hccccCCCCccccCCCCCCHHHHHHHHHHH
Confidence 431 1134568899999998888
No 14
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=100.00 E-value=3.5e-35 Score=276.93 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=122.4
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeee-eeCChHHHHHHHHhCCcEEEE
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIE-LWDAPRECFNVLRSRGYRIAT 238 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~-~~~~l~~~l~~Lk~~G~~i~a 238 (357)
++.||||+++||+|+|+|+|+|++||+++++++++.+....+++.+.|+|+.+.++.. .++|++++++++ .++++
T Consensus 4 ~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~~~~~~~~a~~~a~GA~~~l~~~~~~~~l~eal~~~----~~v~a 79 (249)
T 3onp_A 4 EPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDC----DYVFA 79 (249)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTC----SEEEE
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCcCCCcHHHHHHcCCccccCceEEEeCCHHHHHHhC----CeEEE
Confidence 4789999999999999999999999999999998875444567888999999877654 469999998765 36888
Q ss_pred EeeCCCceeecccCC---------------CCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHH
Q 018365 239 THVGMDAISVYDMDW---------------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHH 303 (357)
Q Consensus 239 t~~~~~s~~l~~~~~---------------~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye 303 (357)
++... ..+.+..+ .+|++||||||+.||++++++.||.+|+|||+|.++|||||+|++|+|||
T Consensus 80 tt~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~~~SLNva~A~aI~lYE 157 (249)
T 3onp_A 80 TTARG--RELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYE 157 (249)
T ss_dssp EESSC--CCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTTCCCCCHHHHHHHHHHH
T ss_pred EcCCC--CCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhCCeEEEEcCCCCCCceeHHHHHHHHHHH
Confidence 88754 34444333 35999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcC------CCCCCCHHHHHHHHHHH
Q 018365 304 AVCDRATRLG------CNGDLTSEEKQILLAEF 330 (357)
Q Consensus 304 ~~rqr~~~~~------~~~~ls~eE~~~ll~~~ 330 (357)
++||+..... .....+.+|.+.+..+|
T Consensus 158 ~~rq~~~~~~~~~~~~~~~~a~~~e~e~~~~~l 190 (249)
T 3onp_A 158 WRRQHDETPPEVIDMARVDFASGLEVEKLGDHF 190 (249)
T ss_dssp HHHC-----------------------------
T ss_pred HHHhhcccCCccccccCCCCCCHHHHHHHHHHH
Confidence 9998754322 22456778888888877
No 15
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=100.00 E-value=2.5e-34 Score=266.83 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=133.7
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCccc-------------------chhhhhhcCCCceeeeee-ee
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKR-------------------YRENRHVSMGAEKWLDIE-LW 219 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~-------------------~~~~~r~S~Ga~~~v~v~-~~ 219 (357)
.++||||+++||+|+|+|+|||++||+++|+++++.+.+. .+++.++|+|+.++++.. .+
T Consensus 17 ~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aaGA~~~l~~~~v~ 96 (223)
T 3ic6_A 17 NIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIV 96 (223)
T ss_dssp GEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEEE
T ss_pred CEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhCCccccCceEEEe
Confidence 5899999999999999999999999999999998776432 237889999999988754 46
Q ss_pred CChHHHHHHHHhCCcEEEEEeeCCCcee------------eccc-CCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCC
Q 018365 220 DAPRECFNVLRSRGYRIATTHVGMDAIS------------VYDM-DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKG 286 (357)
Q Consensus 220 ~~l~~~l~~Lk~~G~~i~at~~~~~s~~------------l~~~-~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g 286 (357)
+++.++++++ +++++++....... +.++ ++.++++||||+|+.||++++++.||.+|+|||.|
T Consensus 97 ~~l~eal~~~----~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~IPm~~ 172 (223)
T 3ic6_A 97 ATLDEALADT----TIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNP 172 (223)
T ss_dssp SCHHHHHTTE----EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECCCCCT
T ss_pred CCHHHHHHhC----CeEEEEeccCCcccccccCHHHHHHHHHHhhcccCCEEEEECCCCCCCCHHHHHhCceEEEecCCC
Confidence 8998887765 57999987654321 1122 34689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhhhhhcC----CCCCCCHHHHHHHHHHH
Q 018365 287 MVDSFNVSVAAGILMHHAVCDRATRLG----CNGDLTSEEKQILLAEF 330 (357)
Q Consensus 287 ~v~SLNVSvAaaI~Lye~~rqr~~~~~----~~~~ls~eE~~~ll~~~ 330 (357)
.++|||||+|++|+|||++||+..... .....+.+|.+.+..+|
T Consensus 173 ~~~SLNva~A~aI~lye~~rq~~~~~~~~~~~~~~a~~~~~e~~~~~l 220 (223)
T 3ic6_A 173 DYFSLNLAQAVQVVCYEIFSQTDSPMTHLQQEDHAATHEQIKGMLAHM 220 (223)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTTTSCCCCCCC--CCCCHHHHHHHHTTC
T ss_pred CCCeeEHHHHHHHHHHHHHHhhccCCCCCCcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999998731111 12456778877776554
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=99.75 E-value=2.8e-18 Score=155.61 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=112.1
Q ss_pred cEEEEEec-CCCCCc------------HHHHHHHHHHhCCceEEEeCCCCcccchhhhh------hcCCCc------ee-
Q 018365 160 SVCLVVEG-LSDFGN------------VSATFRSADALGVQSVHVVSCDSSKRYRENRH------VSMGAE------KW- 213 (357)
Q Consensus 160 ~l~vVLd~-i~dP~N------------lGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r------~S~Ga~------~~- 213 (357)
.+.|+|.. +...+| +|.|.|+|..||++.++++.|.... ...+.+ .+.|+. +-
T Consensus 4 ~~~v~LvhyPv~~~~~~~~~t~vtn~dihdiARamkt~Gl~~l~LV~P~~~~-~~~a~~~~~~w~~~~Ga~~np~r~d~L 82 (192)
T 3dcm_X 4 KVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQ-QDMVSKMLKFWREGFGSRYNPSRAESL 82 (192)
T ss_dssp SEEEEEECSSEECTTCSEECCCCCHHHHHHHHHHHHHTTCSEEEEECCCHHH-HHHHHHHHHHHHTSGGGGTCSSSHHHH
T ss_pred ceEEEEecccccCCCCCEeeeecccccHHHHHHHHHhcCCceEEEECCcccc-HHHHHHHHHhhhcccCcccCcCHHHHh
Confidence 46677765 777777 9999999999999999999986432 212222 245552 22
Q ss_pred eeeeeeCChHHHHHHHHh---CCcEEEEEeeCCC--ceeeccc-----CCCCCEEEEEcCCCCCCCHHHHhhCCcEE-EE
Q 018365 214 LDIELWDAPRECFNVLRS---RGYRIATTHVGMD--AISVYDM-----DWSCPTAIVVGNENRGVSDEALSLSDLRC-SI 282 (357)
Q Consensus 214 v~v~~~~~l~~~l~~Lk~---~G~~i~at~~~~~--s~~l~~~-----~~~~~~aLVfGnE~~GLs~e~l~~cD~~v-~I 282 (357)
-.+..+++++++++++.+ +++.++||+.... ..+..++ ...+|++||||+ +.||++|+++.||.++ .|
T Consensus 83 ~~a~vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~-~~GLtneel~~cd~~l~~I 161 (192)
T 3dcm_X 83 KLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGT-GWGLPDEILEISDYVLEPI 161 (192)
T ss_dssp TTEEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECC-TTCCCHHHHTTCSEEBCCT
T ss_pred ccCeEECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHhcCEEEccC
Confidence 245667899999999974 5688999986532 2333332 246899999999 6999999999999999 89
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHH
Q 018365 283 PMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 283 Pm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
|.++.+.||||++|++|+||+++.
T Consensus 162 p~~~eY~~Lnl~~AVaIiLdrl~g 185 (192)
T 3dcm_X 162 RAQSDFNHLSVRAAAAIIIDRLIG 185 (192)
T ss_dssp TTTSSCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCccCHHHHHHHHHHHHcC
Confidence 999999999999999999999964
No 17
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.041 Score=49.28 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=80.1
Q ss_pred HHHHHHHhCCceEEEeCCCCcccchhhh--hhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEEeeCCCceeeccc---
Q 018365 177 TFRSADALGVQSVHVVSCDSSKRYRENR--HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDM--- 251 (357)
Q Consensus 177 IlRtA~afGv~~Vii~~~~~~~~~~~~~--r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~--- 251 (357)
+.-||.|||++++++...........+. -..-|+.|++.. ..++...++.. |..|+.+++-+ .++.++
T Consensus 21 V~LtARAfGA~~iil~~~~D~~v~esv~dV~~rWGG~F~ve~--~~~wk~~ik~w---gG~VVHLTMYG--~~i~dvi~e 93 (201)
T 2yy8_A 21 VALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEF--NRNWRKVMKEF---TGVKVHLTMYG--LHVDDVIEE 93 (201)
T ss_dssp HHHHHHHTTCSEEEESSSCCHHHHHHHHHHHHHHCSCCBCCB--CSCHHHHHHHC---CSEEEEEEEEE--EEHHHHHHH
T ss_pred HHHHHHHhcCCeEEEcCCcChhHHHHHHHHHHhcCCceEEEE--CCCHHHHHHhc---CCEEEEEecCC--CchHHHHHH
Confidence 4568999999999776532222222222 234577776654 35666666555 77888888753 344433
Q ss_pred -C----CCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018365 252 -D----WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (357)
Q Consensus 252 -~----~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~r 306 (357)
. -..+..+|+|.|. ++.++-+.||..|.|---+.-+ ..|.||+|-.++.
T Consensus 94 Ir~~~~~~~~iLVVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAvFLDrl~~ 147 (201)
T 2yy8_A 94 LKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----VAALAVLLDRLLE 147 (201)
T ss_dssp HHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCH----HHHHHHHHHHHTT
T ss_pred HHhhcccCCCEEEEECCCc--CCHHHHhhcCcceeeCCCChHH----HHHHHHHHHHhcC
Confidence 2 1468999999997 9999999999999996544433 3578899988875
No 18
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=95.80 E-value=0.028 Score=49.43 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=75.4
Q ss_pred HHHHHHHhCCceEEEeCCCCcccchhhh--hhcCCCceeeeeeeeCChHHHHHHHHhCCcEEEEEeeCCCceeeccc---
Q 018365 177 TFRSADALGVQSVHVVSCDSSKRYRENR--HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDM--- 251 (357)
Q Consensus 177 IlRtA~afGv~~Vii~~~~~~~~~~~~~--r~S~Ga~~~v~v~~~~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~--- 251 (357)
+.-||.|||++++++... .......+. -..-|+.|++. ..++...++.. |..++.+++-+ .++.++
T Consensus 24 V~LtARAfGA~~iil~~~-D~~v~esv~dV~~rwGG~F~ve---~~~w~~~i~~w---~G~VVHLTMYG--~~i~dvi~~ 94 (178)
T 2o3a_A 24 VALTARAFGAKGIYFDTE-DKSVFESVRDVVERWGGDFFIK---AVSWKKLLREF---DGLKVHLTMYG--IPLPQKLEE 94 (178)
T ss_dssp HHHHHHHTTCSEEEESSC-CHHHHHHHHHHHHHHCSCCEEE---ECCHHHHHHHC---CSEEEEEEEEE--EEHHHHHHH
T ss_pred HHHHHHHhCCCeeEEeCC-CHHHHHHHHHHHHhcCCceEEE---ecCHHHHHHHc---CCEEEEEecCC--CchHHHHHH
Confidence 456899999999977653 221222222 23458888776 46776666655 77888888753 344333
Q ss_pred -CCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 018365 252 -DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (357)
Q Consensus 252 -~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye~~ 305 (357)
.-..+..+|+|.|. ++.++-+.||..|.|---+.-+ ..|.||+|-.++
T Consensus 95 Ir~~~~iLvVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAvFLDrl~ 143 (178)
T 2o3a_A 95 IKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSE----VAALAVFLDRVL 143 (178)
T ss_dssp HHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCH----HHHHHHHHHHHT
T ss_pred hhcCCCEEEEECCCc--CCHHHHhhcCcceeeCCCChHH----HHHHHHHHHHhh
Confidence 33568999999997 9999999999999996544433 357788888776
No 19
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=93.06 E-value=0.63 Score=41.92 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=65.6
Q ss_pred CChHHHHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHH----HHhhCCcEEEECCCCCCCcccHHH
Q 018365 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE----ALSLSDLRCSIPMKGMVDSFNVSV 295 (357)
Q Consensus 220 ~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e----~l~~cD~~v~IPm~g~v~SLNVSv 295 (357)
.++++.++++++.| +++-++..+ .++....++...++|+|- ..|++++ +.+.++..++| |. .+|=.++
T Consensus 112 ~sle~ll~e~~~~~-~v~~L~E~G--~~i~~~~~~~~~~fvlGd-H~~f~~e~~~~l~~~~~~~iSi---gp-~~L~A~~ 183 (197)
T 2qmm_A 112 KGLEELIEELSEKY-SIIYLKEDG--VDISNAQLPPNPLFVIGD-HEGLTEEQEKVVERYAALKLSL---SP-LSLLAEQ 183 (197)
T ss_dssp CCHHHHHHHHHHHS-EEEEEEEEE--EEGGGSCCCSSEEEEEEC-TTCCCHHHHHHHHTTCSEEEEC---CS-SCCCHHH
T ss_pred CCHHHHHHHhhcCC-cEEEEcCCC--CCCchhhcCCCCEEEEeC-CCCCCHHHHHHHHHhcCeEEEE---CC-chhHHHH
Confidence 68899999987665 577777654 567777777889999999 8899999 78888888888 22 8999999
Q ss_pred HHHHHHHHHHHh
Q 018365 296 AAGILMHHAVCD 307 (357)
Q Consensus 296 AaaI~Lye~~rq 307 (357)
+++++-+++-+.
T Consensus 184 vi~~vh~~ld~~ 195 (197)
T 2qmm_A 184 CVVIAHHHLDRL 195 (197)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999998543
No 20
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=91.15 E-value=1.9 Score=39.15 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=65.3
Q ss_pred CChHHHHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHH---H-HhhCCcEEEECCCCCCCcccHHH
Q 018365 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE---A-LSLSDLRCSIPMKGMVDSFNVSV 295 (357)
Q Consensus 220 ~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e---~-l~~cD~~v~IPm~g~v~SLNVSv 295 (357)
.++++.++++.+.|..++-++..+ .++.+..+ ...++|+|- ..|++++ . .+.++..++|- . .+|=.++
T Consensus 123 ~sle~ll~e~~~~~~~v~~L~E~G--~~i~~~~~-~~~~fvlGd-H~~f~~e~~~~L~~~~~~~iSig---p-~~L~A~h 194 (211)
T 3aia_A 123 LGFRNLVLEKLEEGKNIYYLHMNG--EDVENVDI-ENPVFIIGD-HIGIGEEDERFLDEIKAKRISLS---P-LELHANH 194 (211)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEEE--EEGGGCCC-CSEEEEEEC-SSCSCHHHHHHHHHTTCEEEECC---S-SCCCHHH
T ss_pred CCHHHHHHHHhhcCCcEEEEcCCC--CCCccccc-CCcEEEEEC-CCCCCHHHHHHHHhhCCeEEEEC---C-cchHHHH
Confidence 688999999988887888888764 56777777 788999999 7799999 5 56777888882 2 8999999
Q ss_pred HHHHHHHHHHHh
Q 018365 296 AAGILMHHAVCD 307 (357)
Q Consensus 296 AaaI~Lye~~rq 307 (357)
++.++-+++-+.
T Consensus 195 vi~~vh~~LD~~ 206 (211)
T 3aia_A 195 CITIIHNVLDKK 206 (211)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhccc
Confidence 999999998643
No 21
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=86.60 E-value=1.3 Score=40.09 Aligned_cols=79 Identities=6% Similarity=-0.034 Sum_probs=55.4
Q ss_pred CChHHHHHHHHhCCcEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhC----CcEEEECCCCCCCcccHHH
Q 018365 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLS----DLRCSIPMKGMVDSFNVSV 295 (357)
Q Consensus 220 ~~l~~~l~~Lk~~G~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~c----D~~v~IPm~g~v~SLNVSv 295 (357)
.++++.++++++.|. +|-++.+ ..++.++.+++..++|+| ...|++++..+.- +..|+| .-.+|=.++
T Consensus 121 ~~fe~ll~e~~~~~~-ly~L~e~--G~di~~~~~~~~~~FvLg-DH~g~~~eee~~L~~~~~~~iSl----GP~~l~A~h 192 (208)
T 2qwv_A 121 ISFEALLGELAEHHS-LYMMDKK--GDSIRDIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKMLFASQ 192 (208)
T ss_dssp CCHHHHHHHHHTTSE-EEEEEEE--EEETTTSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSCCCHHH
T ss_pred CCHHHHHHHHHhcCc-EEEEeCC--CcCHhhccCCCCCEEEEc-CCCCCCHHHHHHHHhcCCeEEEe----CchHHHHHH
Confidence 689999999987754 8888765 478999998889999999 7799999876544 345555 237899999
Q ss_pred HHHHHHHHHHH
Q 018365 296 AAGILMHHAVC 306 (357)
Q Consensus 296 AaaI~Lye~~r 306 (357)
+..++-+++-+
T Consensus 193 cI~~vhn~LD~ 203 (208)
T 2qwv_A 193 CVTLIHNEIDH 203 (208)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999854
No 22
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=85.72 E-value=4.6 Score=37.61 Aligned_cols=124 Identities=8% Similarity=0.071 Sum_probs=71.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCC-Ccccc---------hhhhhhc-----CCCceeee-eeeeCChHHH
Q 018365 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKRY---------RENRHVS-----MGAEKWLD-IELWDAPREC 225 (357)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~-~~~~~---------~~~~r~S-----~Ga~~~v~-v~~~~~l~~~ 225 (357)
+.++-.+-.+..+=-|++-|--+||+.|+.+... +.... ....+.+ ....-++| +....++.++
T Consensus 83 v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~ 162 (268)
T 1vhk_A 83 VYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQL 162 (268)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHHH
T ss_pred EEEEEeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEEecCCCHHHH
Confidence 4455677788999999999999999999877542 21111 0111111 12234566 4445688888
Q ss_pred HHHHHhCCcEEEEEeeCCC-ceee------cccCCCCCEEEEEcCCCCCCCHHHHhhCCc--EEEECCCC
Q 018365 226 FNVLRSRGYRIATTHVGMD-AISV------YDMDWSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKG 286 (357)
Q Consensus 226 l~~Lk~~G~~i~at~~~~~-s~~l------~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~--~v~IPm~g 286 (357)
++.....+..+++...... ...+ .++....+++|++|.|| |+|++.++.+-. ...+.+.+
T Consensus 163 l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG~ 231 (268)
T 1vhk_A 163 LQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQDGVTCGLGP 231 (268)
T ss_dssp HHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTTCEEECCCS
T ss_pred HhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCC-CCCHHHHHHHHHCCCEEecCCC
Confidence 8866443444544332111 1123 33322237899999996 999998775532 34555533
No 23
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=84.70 E-value=4 Score=37.87 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=70.3
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCC-Ccccc------hhhhh-hcC-CCceeee-eeeeCChHHHHHHH
Q 018365 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKRY------RENRH-VSM-GAEKWLD-IELWDAPRECFNVL 229 (357)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~-~~~~~------~~~~r-~S~-Ga~~~v~-v~~~~~l~~~l~~L 229 (357)
.+.|++--++...-+=-+++-|--+||+.|+.+... +.... .+... ++. ....++| +....++.++++.+
T Consensus 78 ~i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~~~k~eRw~~I~~eAaeQs~R~~~P~v~~~~~~~~~l~~~ 157 (257)
T 3kw2_A 78 RITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADT 157 (257)
T ss_dssp CEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHS
T ss_pred ceEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhhhhhHHHHHHHHHHHHHHcCCCcCCEecCcCCHHHHHhhc
Confidence 444444322223446677999999999999866432 22111 11111 211 2234566 44456788888765
Q ss_pred HhCCcEEEEEeeCC------CceeecccC--CCCCEEEEEcCCCCCCCHHHHhhCCc--EEEECCCC
Q 018365 230 RSRGYRIATTHVGM------DAISVYDMD--WSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKG 286 (357)
Q Consensus 230 k~~G~~i~at~~~~------~s~~l~~~~--~~~~~aLVfGnE~~GLs~e~l~~cD~--~v~IPm~g 286 (357)
...+..+++..... ...++.+.. ..++++|++|.|| |+|++.++.+-. ...+-+.+
T Consensus 158 ~~~~~~li~~~~e~~~~~~~~~~~l~~~~~~~~~~v~l~IGPEG-Gfs~~Ei~~~~~~Gf~~vsLG~ 223 (257)
T 3kw2_A 158 PKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALLAGFAPVSLGE 223 (257)
T ss_dssp CTTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHHHTCEEECCCS
T ss_pred cccCCEEEEEcccccccccccccchhHhhccCCCcEEEEECCCC-CCCHHHHHHHHHCCCEEEcCCC
Confidence 55555555542221 123343322 2467999999996 999999987643 24454433
No 24
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=66.94 E-value=18 Score=33.13 Aligned_cols=135 Identities=12% Similarity=0.138 Sum_probs=78.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCC-Ccccch------h---hhhhcC-----CCceeee-eeeeCChHHH
Q 018365 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKRYR------E---NRHVSM-----GAEKWLD-IELWDAPREC 225 (357)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~-~~~~~~------~---~~r~S~-----Ga~~~v~-v~~~~~l~~~ 225 (357)
+.++-.+-.+..+=-|++-|--+||+.|+.+... +...+. + ..+.+. ....++| +....++.++
T Consensus 80 v~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~~~~~~~~~ 159 (251)
T 4e8b_A 80 IHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAW 159 (251)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBCCCEEHHHH
T ss_pred EEEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEECCcCCHHHH
Confidence 4455677888999999999999999999866432 321110 0 111111 2234566 3344566666
Q ss_pred HHHHHhCCcEEEEEeeCCCceeecccCC-CCCEEEEEcCCCCCCCHHHHhhCCc--EEEECCCCCCCcccHHHHHHHHHH
Q 018365 226 FNVLRSRGYRIATTHVGMDAISVYDMDW-SCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMVDSFNVSVAAGILMH 302 (357)
Q Consensus 226 l~~Lk~~G~~i~at~~~~~s~~l~~~~~-~~~~aLVfGnE~~GLs~e~l~~cD~--~v~IPm~g~v~SLNVSvAaaI~Ly 302 (357)
++.. ..+..++. ... ...++.+.+. .++++|++|.|| |.|++.++.+-. ...+.+.+.+ |=.-.|+-.+|.
T Consensus 160 l~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~Gf~~vsLG~rI--LRtETA~i~als 233 (251)
T 4e8b_A 160 CAEQ-DEGLKLNL-HPR-ASNSINTLPLPVERVRLLIGPEG-GLSADEIAMTARYQFTDILLGPRV--LRTETTALTAIT 233 (251)
T ss_dssp HHCC-CSSEEEEE-CTT-CSCBGGGSCSCCCEEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSC--CCHHHHHHHHHH
T ss_pred Hhhc-CcCceEee-chh-hhCchhhccccCCcEEEEECCCC-CCCHHHHHHHHHCCCEEecCCCCc--eeHHHHHHHHHH
Confidence 5542 22434433 332 2345555554 357899999996 999999887643 3455554333 555544443333
No 25
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=58.26 E-value=23 Score=32.62 Aligned_cols=119 Identities=10% Similarity=0.121 Sum_probs=64.7
Q ss_pred EEEecCCCCCcHHHHHHHHHHhCCceEEEeCC-CCcccc---------hhhhhhcCC-----Cceeeeee-eeCChHHHH
Q 018365 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKRY---------RENRHVSMG-----AEKWLDIE-LWDAPRECF 226 (357)
Q Consensus 163 vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~-~~~~~~---------~~~~r~S~G-----a~~~v~v~-~~~~l~~~l 226 (357)
.+.-.+-.+..+=-|++-|--+||+.|+.+.. ++.... ....+.+.. ..-++|-+ ...++.+++
T Consensus 83 ~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~l 162 (257)
T 1vhy_A 83 HLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWC 162 (257)
T ss_dssp EEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHHH
T ss_pred EEEEecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEeccCCHHHHH
Confidence 34456777899999999999999999987754 232111 011122222 22356633 345666666
Q ss_pred HHHHhCCcEEEEEeeCCCceeecccC--CCCCEEEEEcCCCCCCCHHHHhhCCc--EEEECCC
Q 018365 227 NVLRSRGYRIATTHVGMDAISVYDMD--WSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMK 285 (357)
Q Consensus 227 ~~Lk~~G~~i~at~~~~~s~~l~~~~--~~~~~aLVfGnE~~GLs~e~l~~cD~--~v~IPm~ 285 (357)
+.. ..+..++. .... ...+.++. ..++++|++|.|| |.|++.++.+-. ...+...
T Consensus 163 ~~~-~~~~~l~~-~~~~-~~~l~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG 221 (257)
T 1vhy_A 163 AEN-DGALKLNL-HPRA-HYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILLG 221 (257)
T ss_dssp TCC-SSCEEEEE-CTTC-CCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBCC
T ss_pred hcC-CCCcEEEE-cCCC-ccchhhhhccCCCeEEEEEcCCC-CCCHHHHHHHHHCCCEEecCC
Confidence 522 12334443 3222 23343332 2357999999996 999998776532 3445443
No 26
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=56.97 E-value=5.9 Score=34.11 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=45.4
Q ss_pred HHHHHhCCcEEEEEeeCCCceeecccCCC----------CCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHH
Q 018365 226 FNVLRSRGYRIATTHVGMDAISVYDMDWS----------CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSV 295 (357)
Q Consensus 226 l~~Lk~~G~~i~at~~~~~s~~l~~~~~~----------~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSv 295 (357)
++.++. + .+++++..+ +.+.+..|. ..++||+|. ..|+++++++.||..+++-- + .|.=-.
T Consensus 61 l~~i~~-~-~vi~Ld~~G--k~~sS~~fA~~l~~~~~~g~~i~FvIGG-~~Gl~~~v~~rA~~~lSlS~--m--T~pHql 131 (155)
T 1ns5_A 61 LAAAGK-N-RIVTLDIPG--KPWDTPQLAAELERWKLDGRDVSLLIGG-PEGLSPACKAAAEQSWSLSA--L--TLPHPL 131 (155)
T ss_dssp HHHHTT-S-EEEEEEEEE--ECCCHHHHHHHHHHHHHHCSCEEEEECB-TTBCCHHHHHHCSEEECCCS--S--CCCHHH
T ss_pred HHhcCC-C-cEEEEcCCC--CcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCceEEccC--C--CCcHHH
Confidence 444443 5 488888764 344443321 468999998 58999999999998776532 1 233334
Q ss_pred HHHHHHHHHHH
Q 018365 296 AAGILMHHAVC 306 (357)
Q Consensus 296 AaaI~Lye~~r 306 (357)
+--|++=+++|
T Consensus 132 ~RliL~EQiYR 142 (155)
T 1ns5_A 132 VRVLVAESLYR 142 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555665
No 27
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=54.45 E-value=4.3 Score=37.18 Aligned_cols=132 Identities=13% Similarity=0.049 Sum_probs=69.6
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCceEEEeCCCCccc---chhhhhhcC-----CCceeeeeeeeCChHHHHHHHHhCC
Q 018365 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKR---YRENRHVSM-----GAEKWLDIELWDAPRECFNVLRSRG 233 (357)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~---~~~~~r~S~-----Ga~~~v~v~~~~~l~~~l~~Lk~~G 233 (357)
+.++-.+-.+..+=-+++-|--+||+.++.+...+... .....+.+. ....++|-+...++.++++.. .+
T Consensus 87 i~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~s~~~~~k~eRw~~i~~eAaeQs~R~~~P~v~~~~~~~~l~~~--~~ 164 (234)
T 1z85_A 87 LSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGNV--IT 164 (234)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCCCCHHHHHHHHHHHHHHHTCSBCCEEEECCSCCCCSEE--EE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCEEEEEEEEEEechhhHHHHHHHHHHHHHHcCCCccceEEeccHHHHHhhC--CC
Confidence 34555777888999999999999999998876542110 011111111 112345533355555544321 12
Q ss_pred cEEEEEeeCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHHH
Q 018365 234 YRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHH 303 (357)
Q Consensus 234 ~~i~at~~~~~s~~l~~~~~~~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Lye 303 (357)
. ++ +... .. +.++. ++++++++|.|| |.|++.++.+-.. ..|..=+-.-|=.-.|+-.+|.-
T Consensus 165 ~-lv--~e~~-~~-l~~~~-~~~i~l~IGPEG-Gfs~~Ei~~~~~~-f~~vsLG~rILRtETA~i~ala~ 226 (234)
T 1z85_A 165 L-DL--DASQ-NL-LDANL-EGSITVVVGPEG-GFSEKERELLRSS-TTIVSLGKKILRFETAAILTVGY 226 (234)
T ss_dssp E-CC-----C-CC-SSSCC-CSSEEEEECCTT-CCCHHHHHHHHHH-SEEC------CCHHHHHHHHHHH
T ss_pred e-EE--ECCc-ch-hhhcc-CCCEEEEEcCCC-CCCHHHHHHHHhh-CeEccCCCCeeEhHHHHHHHHHH
Confidence 2 22 2211 11 33332 357999999996 9999998766544 44443222335555555444433
No 28
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=53.92 E-value=8.4 Score=33.47 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=42.7
Q ss_pred CcEEEEEeeCCCceeecccCC---------C--CCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHH
Q 018365 233 GYRIATTHVGMDAISVYDMDW---------S--CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (357)
Q Consensus 233 G~~i~at~~~~~s~~l~~~~~---------~--~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~L 301 (357)
+-.+++++..+ +.+.+..| . ..++||+|. ..|+++++++.||..+++-- + .|.=-.+--|++
T Consensus 74 ~~~vI~LD~~G--k~~sS~~fA~~l~~~~~~g~~~i~FvIGG-~~Gl~~~v~~rA~~~lSlS~--m--TfpHqL~RliL~ 146 (163)
T 4fak_A 74 QSTVITLEIQG--KMLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGLHKDVLQRSNYALSFSK--M--TFPHQMMRVVLI 146 (163)
T ss_dssp TSEEEEEEEEE--EECCHHHHHHHHHHHHHTTCCEEEEEECB-TTBCCHHHHHHCSEEEESCS--S--CCCHHHHHHHHH
T ss_pred CCEEEEEcCCC--CcCCHHHHHHHHHHHHhcCCcceEEEEEC-CCccCHHHHHhcCceEEEec--C--CCCHHHHHHHHH
Confidence 45677787764 34443322 2 368999998 68999999999998877632 1 122233444555
Q ss_pred HHHHH
Q 018365 302 HHAVC 306 (357)
Q Consensus 302 ye~~r 306 (357)
=+++|
T Consensus 147 EQlYR 151 (163)
T 4fak_A 147 EQVYR 151 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55655
No 29
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=53.35 E-value=21 Score=32.21 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=76.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCceEEEeCC-CCcccc------hhhhhhc-----CCCceeeeee-eeCChHHHHHH
Q 018365 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKRY------RENRHVS-----MGAEKWLDIE-LWDAPRECFNV 228 (357)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~-~~~~~~------~~~~r~S-----~Ga~~~v~v~-~~~~l~~~l~~ 228 (357)
+.++-.+-.+..+=-+++-|--+||+.++.+.. ++...+ ....+.+ ....-++|-+ ...++.++++
T Consensus 73 v~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~k~~Rw~~i~~eAaeQs~r~~~P~v~~~~~~~~~l~- 151 (228)
T 1v6z_A 73 VVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQ- 151 (228)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCC-
T ss_pred EEEEEEecchHHHHHHHHHHHhhCCCEEEEEEEEEEEeeccccchHHHHHHHHHHHHHHcCCCcCcEEecCCCHHHHhh-
Confidence 345557778899999999999999999987754 232111 1111111 1223455533 3345555554
Q ss_pred HHhCCcEEEEEeeCCCceeecccCC-CCCEEEEEcCCCCCCCHHHHhhCCc--EEEECCCCCCCcccHHHHHHHHHHHH
Q 018365 229 LRSRGYRIATTHVGMDAISVYDMDW-SCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMVDSFNVSVAAGILMHHA 304 (357)
Q Consensus 229 Lk~~G~~i~at~~~~~s~~l~~~~~-~~~~aLVfGnE~~GLs~e~l~~cD~--~v~IPm~g~v~SLNVSvAaaI~Lye~ 304 (357)
. +..+++.... ...+.++.. .+++++++|.|| |.|++.++.+-. ...+.+.+. -|=.-.|+-.+|.-+
T Consensus 152 --~-~~~l~~~~~~--~~~l~~~~~~~~~~~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG~r--ILRtETA~i~ala~~ 222 (228)
T 1v6z_A 152 --V-AQGLVAHVGA--TARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRR--ILRAETAALALLALC 222 (228)
T ss_dssp --C-SSEEEECTTC--CCCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHHHHTEEEECCCSS--CCCHHHHHHHHHHHH
T ss_pred --C-CCEEEEeCCC--ccchhhhccCCCcEEEEEcCCC-CCCHHHHHHHHHCCCEEecCCCC--eeEeHHHHHHHHHHH
Confidence 2 5555543322 233433322 357999999996 999999876533 344444333 355555555555433
No 30
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=49.54 E-value=13 Score=33.68 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=72.4
Q ss_pred EEEecC-CCCCcHHHHHHHHHHhCCceEEEeCC-CCcccc-------hhhhhhcC-----CCceeeeee-eeCChHHHHH
Q 018365 163 LVVEGL-SDFGNVSATFRSADALGVQSVHVVSC-DSSKRY-------RENRHVSM-----GAEKWLDIE-LWDAPRECFN 227 (357)
Q Consensus 163 vVLd~i-~dP~NlGaIlRtA~afGv~~Vii~~~-~~~~~~-------~~~~r~S~-----Ga~~~v~v~-~~~~l~~~l~ 227 (357)
.++-.+ -.+..+=-+++-|--+||+.++.+.. ++...+ ....+.+. ...-++|-+ ...++.++++
T Consensus 74 ~L~~al~~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~k~~Rw~~i~~eAaeQs~r~~iP~v~~~~~~~~~l~ 153 (229)
T 2egv_A 74 TLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIP 153 (229)
T ss_dssp EEEEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEGGGCCC
T ss_pred EEEEecccCHHHHHHHHHHHHHhCcCEEEEEEeEEeeecccchhhHHHHHHHHHHHHHHHcCCCcCcEEcccCCHHHHHh
Confidence 344566 78899999999999999999987754 332211 01111111 112345533 3345555444
Q ss_pred HHHhCCcEEEEEeeCCCceeecccCCCC-CEEEEEcCCCCCCCHHHHhhCCc--EEEECCCCCCCcccHHHHHHHHHHHH
Q 018365 228 VLRSRGYRIATTHVGMDAISVYDMDWSC-PTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMVDSFNVSVAAGILMHHA 304 (357)
Q Consensus 228 ~Lk~~G~~i~at~~~~~s~~l~~~~~~~-~~aLVfGnE~~GLs~e~l~~cD~--~v~IPm~g~v~SLNVSvAaaI~Lye~ 304 (357)
.. .+..+++ +... ...+.++.-.+ ++++++|.|| |.|++.++.+-. ...+.+.+. -|=.-.|+-.+|.-+
T Consensus 154 ~~--~~~~li~-~~~~-~~~l~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG~r--ILRtETA~i~ala~~ 226 (229)
T 2egv_A 154 ES--EENIILD-NFYE-GVKPKDVNLEAKTYSVVVGPEG-GFSKRESQILREKGFKSVLLEPY--TLRTETAVVSIVSIL 226 (229)
T ss_dssp CS--SEEEEEC-TTSC-CBCGGGSCTTCSEEEEEECCTT-CCCHHHHHHHHHTTCEEECCSSS--CCCHHHHHHHHHHHH
T ss_pred hC--CCCEEEE-cCCc-cchhhhhccCCCcEEEEEcCCC-CCCHHHHHHHHHCCCEEecCCCC--eeEhHHHHHHHHHHH
Confidence 21 1223332 2221 23343432234 6899999996 999998775532 244444332 255555555444433
No 31
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=44.42 E-value=13 Score=32.42 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=43.7
Q ss_pred CcEEEEEeeCCCceeecccCC---------C--CCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHH
Q 018365 233 GYRIATTHVGMDAISVYDMDW---------S--CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (357)
Q Consensus 233 G~~i~at~~~~~s~~l~~~~~---------~--~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~L 301 (357)
+..+++++..+ +.+.+..| . ..++||+|. ..|+++++++.||..+++-- + .|.=-.+--|++
T Consensus 70 ~~~vI~LD~~G--k~~sS~~fA~~l~~~~~~G~~~i~FvIGG-a~Gl~~~v~~rA~~~lSlS~--m--TfpHqL~RliL~ 142 (167)
T 1to0_A 70 DAHVIALAIEG--KMKTSEELADTIDKLATYGKSKVTFVIGG-SLGLSDTVMKRADEKLSFSK--M--TFPHQLMRLILV 142 (167)
T ss_dssp TSEEEEEEEEE--EECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCCCHHHHHHCSEEEESCS--S--CCCHHHHHHHHH
T ss_pred CCEEEEEcCCC--CcCCHHHHHHHHHHHHhcCCceEEEEEEC-CCCCCHHHHHhhCcEEEccC--C--CCcHHHHHHHHH
Confidence 44577777654 33333322 2 358999998 58999999999999877642 1 233344555666
Q ss_pred HHHHH
Q 018365 302 HHAVC 306 (357)
Q Consensus 302 ye~~r 306 (357)
=+++|
T Consensus 143 EQiYR 147 (167)
T 1to0_A 143 EQIYR 147 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
No 32
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=43.42 E-value=13 Score=32.36 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=44.7
Q ss_pred CcEEEEEeeCCCceeecccCCC----------CCEEEEEcCCCCCCCHHHHhhCCcEEEECCCCCCCcccHHHHHHHHHH
Q 018365 233 GYRIATTHVGMDAISVYDMDWS----------CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (357)
Q Consensus 233 G~~i~at~~~~~s~~l~~~~~~----------~~~aLVfGnE~~GLs~e~l~~cD~~v~IPm~g~v~SLNVSvAaaI~Ly 302 (357)
+..+++++..+ +.+.+..|. ..++||+|. ..|+++++++.||..+++-- -.|.=-.+--|++=
T Consensus 65 ~~~vI~LD~~G--k~~sS~~fA~~l~~~~~~G~~i~FvIGG-a~Gl~~~v~~rAd~~lSlS~----mTfpHqL~RliL~E 137 (163)
T 1o6d_A 65 GSFVMVMDKRG--EEVSSEEFADFLKDLEMKGKDITILIGG-PYGLNEEIFAKAHRVFSLSK----MTFTHGMTVLIVLE 137 (163)
T ss_dssp TCEEEEEEEEE--EECCHHHHHHHHHHHHHHTCCEEEEECC-TTCCCGGGGGGCSEEEECCS----SCCCHHHHHHHHHH
T ss_pred CCEEEEEcCCC--CcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCceEEccC----CCCcHHHHHHHHHH
Confidence 44577887764 344443321 468999998 58999999999999887642 12334455556666
Q ss_pred HHHH
Q 018365 303 HAVC 306 (357)
Q Consensus 303 e~~r 306 (357)
+++|
T Consensus 138 QiYR 141 (163)
T 1o6d_A 138 QIFR 141 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 33
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=39.11 E-value=20 Score=21.70 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH
Q 018365 293 VSVAAGILMHHAV 305 (357)
Q Consensus 293 VSvAaaI~Lye~~ 305 (357)
+++|+++++|-|+
T Consensus 13 iav~aaVllylW~ 25 (26)
T 3j1r_A 13 IAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6899999999885
No 34
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=36.03 E-value=59 Score=27.07 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=33.2
Q ss_pred eeeeCChHHHHHHHHhCCcEEEEEeeCCCc------eeecccCCCCCEEEEEcCCC
Q 018365 216 IELWDAPRECFNVLRSRGYRIATTHVGMDA------ISVYDMDWSCPTAIVVGNEN 265 (357)
Q Consensus 216 v~~~~~l~~~l~~Lk~~G~~i~at~~~~~s------~~l~~~~~~~~~aLVfGnE~ 265 (357)
+...+...++|+.|+++|++++.++..... ..+..+.+..-.-.|++.+.
T Consensus 33 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~ 88 (189)
T 3ib6_A 33 VVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNS 88 (189)
T ss_dssp CCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCT
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccc
Confidence 345578889999999999999888865321 12333444445556666664
No 35
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=26.54 E-value=41 Score=31.43 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCceEEEeCC
Q 018365 174 VSATFRSADALGVQSVHVVSC 194 (357)
Q Consensus 174 lGaIlRtA~afGv~~Vii~~~ 194 (357)
+|-|+|+|+-|+|+.|++.+.
T Consensus 28 ~gqIARAaaIF~VdEIvVy~d 48 (268)
T 1k3r_A 28 VVLIARAASIFGVKRIVIYHD 48 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHhccccEEEEEeC
Confidence 799999999999999998754
No 36
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=23.50 E-value=1.8e+02 Score=27.87 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=49.4
Q ss_pred ecCCCCCcHHHHHHHHHHhCCceEEEeCCCCcccchhhhhhcCCCceeeeeeeeCChH---HHHHHHHhCCcEEEEEeeC
Q 018365 166 EGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPR---ECFNVLRSRGYRIATTHVG 242 (357)
Q Consensus 166 d~i~dP~NlGaIlRtA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~~l~---~~l~~Lk~~G~~i~at~~~ 242 (357)
.++.+|.===++.|.|+.+|+-.+ ++..+....+.+..++.++..|..++...|-+ +.++..++.||+.+.++.+
T Consensus 80 ~~l~~~~ge~~~araa~~~gi~~~--lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD 157 (352)
T 3sgz_A 80 HSIAWPDGEKSTARAAQEANICYV--ISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITID 157 (352)
T ss_dssp GGGTCTTHHHHHHHHHHHHTCEEE--ECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred HHhcCccHHHHHHHHHHHcCCCeE--eCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 345556655689999999998765 34433222334445555578898887777654 4566667889987777654
No 37
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=23.26 E-value=68 Score=21.79 Aligned_cols=31 Identities=39% Similarity=0.510 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHHhhcc
Q 018365 320 SEEKQILLAEFSLRHSKSAISIVHEYAKRKE 350 (357)
Q Consensus 320 ~eE~~~ll~~~~~r~~~~~~~i~~~~~~~~~ 350 (357)
.+|.+.-+.+|..|+-.-.++.+|+|++.-+
T Consensus 5 seeverklkefvrrhqeitqetlheyaqklg 35 (52)
T 1y66_A 5 SEEVERKLKEFVRRHQEITQETLHEYAQKLG 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3677788888998887777888888876543
No 38
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.62 E-value=4e+02 Score=22.79 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCceEEEeCC
Q 018365 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSC 194 (357)
Q Consensus 148 ~~i~~v~~~~~~~l~vVLd~i~dP~NlGaIlRtA~afGv~~Vii~~~ 194 (357)
..+.+.+......+ ++.+.-.++...-.+++....-++++|++...
T Consensus 27 ~gi~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 72 (276)
T 3jy6_A 27 KGISSILESRGYIG-VLFDANADIEREKTLLRAIGSRGFDGLILQSF 72 (276)
T ss_dssp HHHHHHHHTTTCEE-EEEECTTCHHHHHHHHHHHHTTTCSEEEEESS
T ss_pred HHHHHHHHHCCCEE-EEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 34555555544433 33444445555567777777788888876643
No 39
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=20.30 E-value=1e+02 Score=26.55 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=15.4
Q ss_pred ChHHHHHHHHhCCcEEEEEeeC
Q 018365 221 APRECFNVLRSRGYRIATTHVG 242 (357)
Q Consensus 221 ~l~~~l~~Lk~~G~~i~at~~~ 242 (357)
++.++++.+|++|.++++.+..
T Consensus 146 ~~i~~~~~ak~~G~~vIaIT~~ 167 (212)
T 2i2w_A 146 NVIKAIAAAREKGMKVITLTGK 167 (212)
T ss_dssp HHHHHHHHHHHHTCEEEEEEET
T ss_pred HHHHHHHHHHHCCCeEEEEECC
Confidence 3456677777888887777654
Done!