Query 018366
Match_columns 357
No_of_seqs 197 out of 2269
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:25:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 2.3E-45 5.1E-50 323.7 27.9 337 18-357 3-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 5.7E-39 1.2E-43 292.6 25.8 290 34-344 3-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 3.4E-39 7.4E-44 284.4 17.8 237 96-334 2-241 (241)
4 COG2226 UbiE Methylase involve 99.8 1.8E-18 4E-23 148.6 15.9 162 184-351 42-230 (238)
5 PLN02233 ubiquinone biosynthes 99.8 8.5E-18 1.8E-22 149.3 18.8 155 192-351 71-254 (261)
6 PF01209 Ubie_methyltran: ubiE 99.8 2.1E-19 4.5E-24 156.1 7.0 163 184-351 38-226 (233)
7 TIGR00740 methyltransferase, p 99.8 1.3E-18 2.8E-23 153.2 10.9 155 193-349 52-231 (239)
8 PTZ00098 phosphoethanolamine N 99.8 2.3E-17 5.1E-22 146.7 16.5 155 183-347 42-204 (263)
9 TIGR02752 MenG_heptapren 2-hep 99.7 5.1E-17 1.1E-21 142.4 15.3 168 183-357 35-231 (231)
10 PRK15451 tRNA cmo(5)U34 methyl 99.7 6E-18 1.3E-22 149.4 9.1 153 193-346 55-231 (247)
11 PRK14103 trans-aconitate 2-met 99.7 1.1E-16 2.3E-21 142.3 16.0 156 183-342 19-181 (255)
12 PLN02244 tocopherol O-methyltr 99.7 1.9E-16 4.1E-21 146.0 17.2 151 193-347 117-280 (340)
13 KOG1540 Ubiquinone biosynthesi 99.7 6.4E-16 1.4E-20 130.4 14.9 168 168-342 74-278 (296)
14 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.1E-15 2.5E-20 138.9 16.9 138 194-347 113-258 (340)
15 PRK00216 ubiE ubiquinone/menaq 99.7 2.8E-15 6.2E-20 131.9 18.6 168 184-357 42-238 (239)
16 COG2230 Cfa Cyclopropane fatty 99.7 9.8E-16 2.1E-20 134.0 13.7 157 182-347 61-225 (283)
17 PLN02336 phosphoethanolamine N 99.7 1.3E-15 2.9E-20 147.4 15.9 151 183-346 256-415 (475)
18 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 4.8E-15 1E-19 129.0 16.5 169 184-357 30-223 (223)
19 PF13489 Methyltransf_23: Meth 99.7 1.2E-15 2.7E-20 125.7 12.1 137 192-342 20-160 (161)
20 TIGR00452 methyltransferase, p 99.7 4.2E-15 9E-20 134.2 16.2 153 184-346 112-274 (314)
21 PRK15068 tRNA mo(5)U34 methylt 99.7 2.3E-15 5.1E-20 137.3 14.7 153 184-346 113-275 (322)
22 PRK11207 tellurite resistance 99.6 4.3E-15 9.3E-20 126.6 14.7 141 183-344 20-169 (197)
23 PF02353 CMAS: Mycolic acid cy 99.6 2.3E-15 5E-20 133.7 13.5 160 182-347 51-219 (273)
24 smart00828 PKS_MT Methyltransf 99.6 2.4E-15 5.1E-20 131.2 13.1 136 196-347 1-146 (224)
25 PRK01683 trans-aconitate 2-met 99.6 1.1E-14 2.4E-19 129.7 15.6 156 182-340 20-182 (258)
26 COG4106 Tam Trans-aconitate me 99.6 3.3E-15 7.2E-20 123.0 11.0 172 182-357 19-203 (257)
27 PRK11036 putative S-adenosyl-L 99.6 6.4E-15 1.4E-19 130.9 13.4 157 183-346 35-208 (255)
28 PRK08317 hypothetical protein; 99.6 1.5E-14 3.2E-19 127.3 15.5 156 184-345 10-176 (241)
29 PLN02396 hexaprenyldihydroxybe 99.6 1.5E-15 3.3E-20 137.7 9.4 144 194-345 131-289 (322)
30 PRK11873 arsM arsenite S-adeno 99.6 1.4E-14 3E-19 130.1 15.0 145 192-345 75-230 (272)
31 PF12847 Methyltransf_18: Meth 99.6 2E-15 4.4E-20 116.7 7.9 97 195-291 2-111 (112)
32 PRK06922 hypothetical protein; 99.6 8.2E-15 1.8E-19 141.2 12.3 141 155-296 378-542 (677)
33 PF13847 Methyltransf_31: Meth 99.6 2E-15 4.2E-20 123.5 5.7 136 194-337 3-152 (152)
34 KOG4300 Predicted methyltransf 99.6 1.9E-14 4.1E-19 117.7 10.8 179 167-353 50-240 (252)
35 TIGR00477 tehB tellurite resis 99.6 6E-14 1.3E-18 119.3 14.3 141 183-344 20-168 (195)
36 PRK10258 biotin biosynthesis p 99.6 1.4E-13 3.1E-18 122.0 16.4 147 182-340 31-182 (251)
37 smart00138 MeTrc Methyltransfe 99.6 8E-14 1.7E-18 123.9 14.6 100 193-292 98-243 (264)
38 PRK05785 hypothetical protein; 99.6 1.6E-13 3.5E-18 119.2 15.6 153 194-356 51-223 (226)
39 TIGR02021 BchM-ChlM magnesium 99.5 9.3E-14 2E-18 120.6 13.8 157 183-349 43-210 (219)
40 PRK06202 hypothetical protein; 99.5 3.1E-13 6.7E-18 118.4 17.1 144 193-346 59-223 (232)
41 PF08241 Methyltransf_11: Meth 99.5 1.1E-14 2.3E-19 108.8 6.4 88 199-289 1-95 (95)
42 TIGR02072 BioC biotin biosynth 99.5 1.7E-13 3.7E-18 120.5 14.6 136 194-344 34-175 (240)
43 PF08242 Methyltransf_12: Meth 99.5 6.9E-15 1.5E-19 111.1 3.1 87 199-287 1-99 (99)
44 PLN02336 phosphoethanolamine N 99.5 1.9E-13 4E-18 132.4 13.9 145 182-343 26-180 (475)
45 PRK08287 cobalt-precorrin-6Y C 99.5 4.3E-13 9.4E-18 113.5 13.4 125 186-345 24-156 (187)
46 TIGR03438 probable methyltrans 99.5 1.6E-13 3.6E-18 124.5 11.3 104 183-289 55-175 (301)
47 PF06080 DUF938: Protein of un 99.5 1.7E-12 3.6E-17 108.4 16.3 158 197-357 28-204 (204)
48 TIGR03587 Pse_Me-ase pseudamin 99.5 3.4E-13 7.4E-18 115.2 12.4 102 193-296 42-147 (204)
49 PRK11705 cyclopropane fatty ac 99.5 5.9E-13 1.3E-17 124.3 14.6 153 183-347 157-314 (383)
50 PRK04266 fibrillarin; Provisio 99.5 2.4E-12 5.1E-17 111.4 16.6 135 188-348 67-213 (226)
51 PRK12335 tellurite resistance 99.5 6.7E-13 1.4E-17 119.9 13.7 139 185-344 112-258 (287)
52 TIGR00537 hemK_rel_arch HemK-r 99.4 3E-12 6.4E-17 107.6 14.9 132 194-356 19-176 (179)
53 PRK07580 Mg-protoporphyrin IX 99.4 1.7E-12 3.7E-17 113.6 14.0 144 193-349 62-218 (230)
54 PF13649 Methyltransf_25: Meth 99.4 6.9E-14 1.5E-18 106.0 4.4 88 198-285 1-101 (101)
55 KOG1270 Methyltransferases [Co 99.4 2.2E-13 4.7E-18 116.0 7.5 143 195-345 90-249 (282)
56 KOG2361 Predicted methyltransf 99.4 4.4E-13 9.5E-18 112.6 8.4 146 196-343 73-235 (264)
57 PF08003 Methyltransf_9: Prote 99.4 2.7E-12 5.9E-17 112.6 13.6 151 184-346 106-268 (315)
58 COG2227 UbiG 2-polyprenyl-3-me 99.4 9.4E-13 2E-17 111.4 8.8 143 194-346 59-216 (243)
59 PLN02585 magnesium protoporphy 99.4 6.1E-12 1.3E-16 113.9 14.7 149 194-357 144-314 (315)
60 PLN03075 nicotianamine synthas 99.4 2.5E-12 5.4E-17 114.1 10.7 98 193-291 122-233 (296)
61 PRK15001 SAM-dependent 23S rib 99.4 1.2E-11 2.6E-16 114.4 15.4 107 184-291 219-340 (378)
62 TIGR00138 gidB 16S rRNA methyl 99.4 8.7E-12 1.9E-16 104.4 12.4 91 195-291 43-142 (181)
63 PRK05134 bifunctional 3-demeth 99.4 6E-12 1.3E-16 110.4 11.9 143 193-345 47-205 (233)
64 PRK09489 rsmC 16S ribosomal RN 99.4 2.9E-11 6.3E-16 111.1 16.3 107 185-292 188-304 (342)
65 TIGR03840 TMPT_Se_Te thiopurin 99.4 3.8E-11 8.2E-16 103.1 15.9 131 193-344 33-186 (213)
66 PRK00107 gidB 16S rRNA methylt 99.4 2.2E-11 4.7E-16 102.3 14.0 117 194-346 45-170 (187)
67 PF05401 NodS: Nodulation prot 99.3 1.5E-12 3.2E-17 107.3 5.4 136 188-347 38-181 (201)
68 PF07021 MetW: Methionine bios 99.3 5.7E-11 1.2E-15 97.8 12.9 143 194-349 13-171 (193)
69 TIGR01983 UbiG ubiquinone bios 99.3 1.2E-11 2.6E-16 107.7 9.7 142 194-345 45-203 (224)
70 PF05891 Methyltransf_PK: AdoM 99.3 6.9E-12 1.5E-16 105.2 7.6 139 194-347 55-203 (218)
71 TIGR03534 RF_mod_PrmC protein- 99.3 4.7E-11 1E-15 105.9 13.2 133 184-348 79-244 (251)
72 PF05148 Methyltransf_8: Hypot 99.3 3.2E-11 6.9E-16 100.1 11.0 159 158-357 32-197 (219)
73 PF12147 Methyltransf_20: Puta 99.3 6E-10 1.3E-14 96.9 19.2 160 193-357 134-311 (311)
74 TIGR02081 metW methionine bios 99.3 4.8E-11 1E-15 101.5 12.3 149 183-347 5-169 (194)
75 PF03848 TehB: Tellurite resis 99.3 1.8E-11 3.9E-16 102.1 9.3 139 184-343 21-167 (192)
76 TIGR02469 CbiT precorrin-6Y C5 99.3 4.7E-11 1E-15 93.7 11.1 100 185-290 11-121 (124)
77 PTZ00146 fibrillarin; Provisio 99.3 4.1E-10 8.9E-15 99.7 17.4 132 192-347 130-273 (293)
78 PRK13255 thiopurine S-methyltr 99.3 2.3E-10 5E-15 98.6 15.3 132 193-345 36-190 (218)
79 PF05175 MTS: Methyltransferas 99.2 1.7E-11 3.7E-16 101.9 7.4 99 194-292 31-141 (170)
80 PRK00121 trmB tRNA (guanine-N( 99.2 2.5E-11 5.5E-16 103.8 8.4 105 185-291 33-156 (202)
81 COG2813 RsmC 16S RNA G1207 met 99.2 4.6E-10 1E-14 98.8 16.0 141 183-357 148-299 (300)
82 PRK11188 rrmJ 23S rRNA methylt 99.2 1.7E-10 3.8E-15 99.0 13.1 106 183-292 40-166 (209)
83 PRK09328 N5-glutamine S-adenos 99.2 2.7E-10 5.9E-15 102.4 15.1 135 192-356 106-274 (275)
84 PRK14968 putative methyltransf 99.2 6.3E-10 1.4E-14 94.1 15.4 123 193-346 22-174 (188)
85 PLN02232 ubiquinone biosynthes 99.2 2.8E-11 6E-16 99.5 6.7 128 222-351 1-153 (160)
86 COG2242 CobL Precorrin-6B meth 99.2 5.6E-10 1.2E-14 91.4 13.6 100 186-292 27-136 (187)
87 TIGR00091 tRNA (guanine-N(7)-) 99.2 5.7E-11 1.2E-15 101.0 7.7 99 194-292 16-133 (194)
88 PRK00517 prmA ribosomal protei 99.2 3.4E-10 7.5E-15 100.1 12.7 121 194-354 119-247 (250)
89 TIGR00536 hemK_fam HemK family 99.2 8.4E-10 1.8E-14 99.5 15.0 94 196-289 116-242 (284)
90 KOG3045 Predicted RNA methylas 99.2 6.4E-10 1.4E-14 94.4 12.7 158 157-357 139-303 (325)
91 PRK11088 rrmA 23S rRNA methylt 99.2 1.6E-10 3.4E-15 103.7 9.8 90 194-292 85-182 (272)
92 PRK13944 protein-L-isoaspartat 99.2 2.8E-10 6.1E-15 97.6 10.6 98 184-290 63-172 (205)
93 TIGR03533 L3_gln_methyl protei 99.1 1E-09 2.2E-14 98.8 14.5 96 194-289 121-249 (284)
94 PHA03411 putative methyltransf 99.1 7.5E-10 1.6E-14 97.0 12.4 123 195-340 65-209 (279)
95 PRK14966 unknown domain/N5-glu 99.1 1.5E-09 3.2E-14 100.8 14.7 132 194-355 251-416 (423)
96 COG4123 Predicted O-methyltran 99.1 1.1E-09 2.4E-14 94.5 13.0 125 192-346 42-195 (248)
97 PRK13942 protein-L-isoaspartat 99.1 8E-10 1.7E-14 95.2 11.4 100 183-291 66-176 (212)
98 PRK14121 tRNA (guanine-N(7)-)- 99.1 5.6E-10 1.2E-14 102.9 10.6 108 184-292 113-236 (390)
99 PRK00377 cbiT cobalt-precorrin 99.1 1.6E-09 3.6E-14 92.4 12.7 98 186-289 33-143 (198)
100 PRK11805 N5-glutamine S-adenos 99.1 3.9E-09 8.4E-14 95.9 15.0 94 196-289 135-261 (307)
101 TIGR00080 pimt protein-L-isoas 99.1 1E-09 2.2E-14 94.9 10.5 99 183-290 67-176 (215)
102 PRK07402 precorrin-6B methylas 99.1 1.1E-09 2.3E-14 93.5 10.2 101 185-292 32-143 (196)
103 PRK14967 putative methyltransf 99.1 4.9E-09 1.1E-13 91.2 14.3 102 192-294 34-162 (223)
104 PRK01544 bifunctional N5-gluta 99.0 3.3E-09 7.2E-14 102.7 13.5 131 195-355 139-304 (506)
105 TIGR00406 prmA ribosomal prote 99.0 2.5E-09 5.5E-14 96.5 11.5 93 194-292 159-260 (288)
106 PRK04457 spermidine synthase; 99.0 1.4E-09 3E-14 96.7 9.5 97 193-290 65-176 (262)
107 TIGR00438 rrmJ cell division p 99.0 3.5E-09 7.6E-14 89.6 10.6 103 184-290 22-145 (188)
108 TIGR03704 PrmC_rel_meth putati 99.0 1.4E-08 3.1E-13 89.7 14.3 128 194-352 86-246 (251)
109 PF01739 CheR: CheR methyltran 99.0 1.6E-09 3.5E-14 91.4 8.0 99 194-292 31-176 (196)
110 cd02440 AdoMet_MTases S-adenos 99.0 5.2E-09 1.1E-13 78.6 9.6 92 197-290 1-103 (107)
111 TIGR01177 conserved hypothetic 99.0 1.2E-08 2.7E-13 94.0 13.4 106 184-292 173-295 (329)
112 COG2264 PrmA Ribosomal protein 98.9 1.1E-08 2.3E-13 90.8 12.1 126 193-353 161-296 (300)
113 COG4976 Predicted methyltransf 98.9 1.6E-09 3.4E-14 90.5 6.4 147 182-347 114-267 (287)
114 PRK10611 chemotaxis methyltran 98.9 1.6E-08 3.5E-13 90.2 12.7 98 194-291 115-262 (287)
115 PRK13256 thiopurine S-methyltr 98.9 2.3E-08 4.9E-13 86.0 12.9 100 193-294 42-166 (226)
116 PF05219 DREV: DREV methyltran 98.9 1.5E-08 3.2E-13 87.3 11.2 143 194-347 94-242 (265)
117 PF05724 TPMT: Thiopurine S-me 98.9 2.4E-08 5.2E-13 86.0 12.3 140 184-345 28-190 (218)
118 PF13659 Methyltransf_26: Meth 98.9 2.3E-09 5.1E-14 83.2 5.6 96 196-292 2-116 (117)
119 KOG1271 Methyltransferases [Ge 98.9 8.5E-09 1.8E-13 83.2 8.6 123 195-347 68-207 (227)
120 PRK00811 spermidine synthase; 98.9 7.8E-09 1.7E-13 92.9 9.4 98 193-290 75-190 (283)
121 PRK00312 pcm protein-L-isoaspa 98.9 1.6E-08 3.4E-13 87.3 11.0 97 184-291 69-175 (212)
122 PF06325 PrmA: Ribosomal prote 98.9 7.9E-09 1.7E-13 92.5 8.3 143 170-354 140-292 (295)
123 COG2890 HemK Methylase of poly 98.9 9.3E-08 2E-12 85.6 15.1 128 197-354 113-273 (280)
124 COG2519 GCD14 tRNA(1-methylade 98.9 3.2E-08 7E-13 84.8 11.5 106 182-295 83-199 (256)
125 COG1352 CheR Methylase of chem 98.9 7.8E-08 1.7E-12 84.7 14.1 99 194-292 96-242 (268)
126 PF04672 Methyltransf_19: S-ad 98.8 2.1E-08 4.5E-13 87.4 10.1 152 183-342 57-233 (267)
127 KOG3010 Methyltransferase [Gen 98.8 1.3E-08 2.9E-13 85.9 8.0 93 196-293 35-139 (261)
128 PRK01581 speE spermidine synth 98.8 2.8E-08 6E-13 90.5 10.3 98 193-290 149-267 (374)
129 PLN02366 spermidine synthase 98.8 3.4E-08 7.3E-13 89.4 10.5 98 193-290 90-205 (308)
130 PRK03612 spermidine synthase; 98.8 7E-08 1.5E-12 94.1 12.2 98 193-291 296-415 (521)
131 KOG2899 Predicted methyltransf 98.8 4.1E-08 8.9E-13 82.9 8.7 151 184-342 47-254 (288)
132 COG2518 Pcm Protein-L-isoaspar 98.7 9.6E-08 2.1E-12 80.1 10.4 99 183-292 62-170 (209)
133 TIGR00417 speE spermidine synt 98.7 4.7E-08 1E-12 87.5 9.2 98 193-290 71-185 (270)
134 PRK13943 protein-L-isoaspartat 98.7 5.8E-08 1.3E-12 88.3 9.6 99 184-291 71-180 (322)
135 PF02390 Methyltransf_4: Putat 98.7 3.3E-08 7.2E-13 83.7 6.3 96 197-292 20-134 (195)
136 PF08100 Dimerisation: Dimeris 98.7 2.1E-08 4.5E-13 64.4 3.3 49 36-84 1-51 (51)
137 PLN02781 Probable caffeoyl-CoA 98.7 1.8E-07 3.8E-12 81.8 10.2 97 192-293 66-180 (234)
138 smart00650 rADc Ribosomal RNA 98.7 1E-07 2.2E-12 79.1 8.2 102 183-292 3-114 (169)
139 PF01135 PCMT: Protein-L-isoas 98.6 4.2E-08 9.1E-13 83.8 5.6 100 183-291 62-172 (209)
140 PRK10901 16S rRNA methyltransf 98.6 2.6E-07 5.7E-12 88.1 11.3 110 184-294 235-375 (427)
141 COG3963 Phospholipid N-methylt 98.6 4.8E-07 1E-11 72.2 10.5 112 181-293 36-158 (194)
142 PLN02672 methionine S-methyltr 98.6 4.9E-07 1.1E-11 93.5 13.3 122 195-346 119-304 (1082)
143 PF08704 GCD14: tRNA methyltra 98.6 2.7E-07 5.8E-12 80.5 8.6 128 183-347 30-173 (247)
144 PRK14904 16S rRNA methyltransf 98.6 4.1E-07 8.9E-12 87.3 10.8 104 192-295 248-381 (445)
145 TIGR00563 rsmB ribosomal RNA s 98.6 3.4E-07 7.3E-12 87.4 10.1 111 184-295 229-372 (426)
146 PRK14902 16S rRNA methyltransf 98.6 4.5E-07 9.8E-12 87.1 10.8 109 185-294 242-382 (444)
147 PF03291 Pox_MCEL: mRNA cappin 98.5 1.7E-07 3.6E-12 85.7 7.1 98 194-292 62-187 (331)
148 PHA03412 putative methyltransf 98.5 6.3E-07 1.4E-11 77.0 9.5 92 195-286 50-158 (241)
149 PF11968 DUF3321: Putative met 98.5 1.4E-06 3.1E-11 73.2 11.2 120 195-347 52-183 (219)
150 PRK14901 16S rRNA methyltransf 98.5 6.2E-07 1.3E-11 85.8 10.4 109 185-294 244-387 (434)
151 KOG1541 Predicted protein carb 98.5 3.4E-07 7.3E-12 76.4 7.2 94 194-290 50-159 (270)
152 COG4122 Predicted O-methyltran 98.5 3.6E-06 7.8E-11 71.8 13.2 99 192-295 57-170 (219)
153 PLN02476 O-methyltransferase 98.5 3.8E-06 8.2E-11 74.5 13.2 97 192-293 116-230 (278)
154 COG0220 Predicted S-adenosylme 98.5 5.6E-07 1.2E-11 77.6 7.6 96 196-291 50-164 (227)
155 TIGR00446 nop2p NOL1/NOP2/sun 98.4 1.4E-06 3E-11 77.7 9.8 104 192-295 69-203 (264)
156 PRK14903 16S rRNA methyltransf 98.4 2E-06 4.3E-11 82.0 10.6 104 192-295 235-370 (431)
157 COG0421 SpeE Spermidine syntha 98.4 1.6E-06 3.6E-11 77.1 9.3 97 193-290 75-189 (282)
158 PF08123 DOT1: Histone methyla 98.4 8.3E-07 1.8E-11 75.5 6.9 110 183-296 32-163 (205)
159 KOG1975 mRNA cap methyltransfe 98.4 1.1E-06 2.5E-11 77.3 7.8 98 193-291 116-237 (389)
160 PLN02823 spermine synthase 98.3 1.9E-06 4.2E-11 78.9 8.3 96 194-290 103-219 (336)
161 PRK11727 23S rRNA mA1618 methy 98.3 4.5E-06 9.8E-11 75.8 10.5 145 194-347 114-294 (321)
162 TIGR03439 methyl_EasF probable 98.3 3E-06 6.5E-11 76.9 9.2 105 182-289 67-195 (319)
163 TIGR00755 ksgA dimethyladenosi 98.3 2.7E-06 5.9E-11 75.4 8.5 91 182-279 18-116 (253)
164 KOG2940 Predicted methyltransf 98.3 2.3E-06 4.9E-11 71.9 7.3 140 194-343 72-225 (325)
165 KOG1500 Protein arginine N-met 98.3 3.5E-06 7.7E-11 74.6 8.7 104 183-288 167-279 (517)
166 PF01596 Methyltransf_3: O-met 98.3 7E-07 1.5E-11 76.1 4.2 97 193-294 44-158 (205)
167 KOG3191 Predicted N6-DNA-methy 98.3 2.5E-05 5.3E-10 63.5 12.6 133 195-356 44-207 (209)
168 PF10294 Methyltransf_16: Puta 98.3 2.2E-06 4.8E-11 71.3 6.8 100 193-294 44-159 (173)
169 PRK13168 rumA 23S rRNA m(5)U19 98.3 1E-05 2.2E-10 77.8 12.1 100 182-290 286-399 (443)
170 PF05185 PRMT5: PRMT5 arginine 98.2 2.1E-06 4.6E-11 81.7 6.4 126 156-288 152-294 (448)
171 TIGR00478 tly hemolysin TlyA f 98.2 3.1E-05 6.8E-10 67.0 12.9 147 180-347 61-219 (228)
172 PRK14896 ksgA 16S ribosomal RN 98.2 7.8E-06 1.7E-10 72.7 9.4 79 182-263 18-102 (258)
173 PF09243 Rsm22: Mitochondrial 98.2 8.6E-06 1.9E-10 72.9 9.5 111 183-296 23-144 (274)
174 PRK00274 ksgA 16S ribosomal RN 98.2 5.9E-06 1.3E-10 74.0 8.3 75 183-260 32-113 (272)
175 PF03141 Methyltransf_29: Puta 98.2 1.9E-06 4.1E-11 80.9 4.9 99 193-295 116-223 (506)
176 KOG1331 Predicted methyltransf 98.2 4.3E-06 9.3E-11 72.9 6.7 102 184-292 38-144 (293)
177 PRK01544 bifunctional N5-gluta 98.2 4.3E-06 9.4E-11 81.2 7.4 98 194-291 347-462 (506)
178 KOG2904 Predicted methyltransf 98.2 1.9E-05 4E-10 68.3 10.0 99 192-290 146-284 (328)
179 PRK10909 rsmD 16S rRNA m(2)G96 98.1 9.2E-06 2E-10 68.9 8.1 95 194-292 53-160 (199)
180 PRK00536 speE spermidine synth 98.1 1.2E-05 2.6E-10 70.8 9.0 89 193-291 71-171 (262)
181 PLN02589 caffeoyl-CoA O-methyl 98.1 6E-06 1.3E-10 72.3 6.6 96 192-293 77-191 (247)
182 PTZ00338 dimethyladenosine tra 98.1 1.4E-05 2.9E-10 72.2 8.4 89 182-274 25-122 (294)
183 PRK04148 hypothetical protein; 98.1 4.2E-05 9E-10 60.0 9.6 100 184-294 7-112 (134)
184 PRK11783 rlmL 23S rRNA m(2)G24 98.1 1.1E-05 2.3E-10 81.8 7.9 97 194-291 538-656 (702)
185 PF01564 Spermine_synth: Sperm 98.0 5.8E-06 1.3E-10 72.7 4.5 99 193-291 75-191 (246)
186 KOG1499 Protein arginine N-met 98.0 1.2E-05 2.6E-10 72.2 5.8 94 194-288 60-164 (346)
187 PRK15128 23S rRNA m(5)C1962 me 98.0 3E-05 6.5E-10 72.9 8.5 97 194-291 220-339 (396)
188 PRK03522 rumB 23S rRNA methylu 97.9 0.0001 2.2E-09 67.5 11.5 88 195-289 174-272 (315)
189 COG0030 KsgA Dimethyladenosine 97.9 7.4E-05 1.6E-09 65.4 8.9 90 182-274 19-116 (259)
190 KOG1661 Protein-L-isoaspartate 97.9 3.3E-05 7.1E-10 64.3 5.9 90 192-289 80-191 (237)
191 COG2263 Predicted RNA methylas 97.8 4E-05 8.7E-10 63.0 6.1 68 194-262 45-118 (198)
192 PF07942 N2227: N2227-like pro 97.8 0.00061 1.3E-08 60.2 13.8 136 194-345 56-242 (270)
193 TIGR00479 rumA 23S rRNA (uraci 97.8 6.1E-05 1.3E-09 72.2 8.0 98 184-289 283-394 (431)
194 KOG3987 Uncharacterized conser 97.8 1.1E-05 2.4E-10 66.8 2.3 140 194-347 112-262 (288)
195 COG4798 Predicted methyltransf 97.8 0.00034 7.4E-09 57.6 10.6 140 191-346 45-206 (238)
196 PF04816 DUF633: Family of unk 97.8 0.00011 2.5E-09 62.5 7.9 123 198-355 1-137 (205)
197 COG2521 Predicted archaeal met 97.7 0.00035 7.6E-09 59.2 10.3 133 192-347 132-279 (287)
198 PF02527 GidB: rRNA small subu 97.7 8.2E-05 1.8E-09 62.2 6.4 89 197-291 51-148 (184)
199 COG0293 FtsJ 23S rRNA methylas 97.7 0.00028 6E-09 59.4 9.3 115 174-292 25-160 (205)
200 PF01728 FtsJ: FtsJ-like methy 97.7 3.6E-05 7.8E-10 64.6 4.0 109 180-292 7-140 (181)
201 KOG0820 Ribosomal RNA adenine 97.7 0.0001 2.3E-09 63.8 6.3 75 182-258 47-129 (315)
202 KOG3115 Methyltransferase-like 97.7 6.2E-05 1.3E-09 62.2 4.7 100 195-294 61-186 (249)
203 PRK00050 16S rRNA m(4)C1402 me 97.6 0.00014 3E-09 65.4 6.4 66 182-248 8-79 (296)
204 TIGR00095 RNA methyltransferas 97.6 0.00025 5.4E-09 59.8 7.6 93 195-292 50-159 (189)
205 PRK11760 putative 23S rRNA C24 97.6 0.00089 1.9E-08 60.7 11.3 96 193-296 210-309 (357)
206 COG1189 Predicted rRNA methyla 97.5 0.0036 7.7E-08 53.6 13.1 151 182-347 67-226 (245)
207 KOG1709 Guanidinoacetate methy 97.5 0.0012 2.5E-08 55.4 9.7 100 193-294 100-209 (271)
208 TIGR02085 meth_trns_rumB 23S r 97.5 0.00037 8E-09 65.4 7.7 90 194-290 233-333 (374)
209 TIGR00027 mthyl_TIGR00027 meth 97.5 0.0024 5.1E-08 56.8 12.2 147 194-343 81-248 (260)
210 COG5459 Predicted rRNA methyla 97.4 0.00011 2.4E-09 65.8 3.5 111 185-296 105-230 (484)
211 COG4262 Predicted spermidine s 97.4 0.00052 1.1E-08 61.9 7.4 93 193-291 288-407 (508)
212 COG0357 GidB Predicted S-adeno 97.4 0.00054 1.2E-08 58.4 6.9 89 195-289 68-166 (215)
213 COG2384 Predicted SAM-dependen 97.3 0.0078 1.7E-07 50.9 13.2 127 184-348 9-146 (226)
214 COG4076 Predicted RNA methylas 97.3 0.00033 7.2E-09 57.3 4.7 96 196-293 34-137 (252)
215 KOG2798 Putative trehalase [Ca 97.2 0.0066 1.4E-07 53.9 11.8 137 194-345 150-337 (369)
216 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0012 2.7E-08 58.7 7.7 96 182-283 19-123 (262)
217 PRK11933 yebU rRNA (cytosine-C 97.2 0.0022 4.9E-08 61.6 9.7 102 192-293 111-244 (470)
218 COG0500 SmtA SAM-dependent met 97.2 0.0035 7.6E-08 50.5 9.6 95 198-296 52-160 (257)
219 KOG3201 Uncharacterized conser 97.2 0.00018 4E-09 57.3 1.5 96 195-292 30-141 (201)
220 PRK10141 DNA-binding transcrip 97.1 0.00087 1.9E-08 51.4 4.9 68 33-104 8-75 (117)
221 COG1889 NOP1 Fibrillarin-like 97.1 0.034 7.4E-07 46.4 14.4 133 189-347 72-216 (231)
222 PLN02668 indole-3-acetate carb 97.1 0.02 4.2E-07 53.4 14.6 103 194-296 63-242 (386)
223 PF01170 UPF0020: Putative RNA 97.1 0.0016 3.5E-08 54.5 6.8 99 184-283 19-143 (179)
224 smart00550 Zalpha Z-DNA-bindin 97.1 0.0016 3.4E-08 45.0 5.5 60 40-104 5-66 (68)
225 PRK04338 N(2),N(2)-dimethylgua 97.1 0.002 4.2E-08 60.5 7.6 90 195-290 58-157 (382)
226 COG4627 Uncharacterized protei 97.0 0.0011 2.4E-08 52.6 4.8 44 249-292 42-87 (185)
227 COG3315 O-Methyltransferase in 97.0 0.0029 6.2E-08 57.2 8.1 158 184-344 84-263 (297)
228 KOG3420 Predicted RNA methylas 97.0 0.0008 1.7E-08 52.7 3.7 68 194-262 48-124 (185)
229 KOG1269 SAM-dependent methyltr 97.0 0.00087 1.9E-08 62.0 4.5 100 194-296 110-220 (364)
230 PF12840 HTH_20: Helix-turn-he 97.0 0.0012 2.6E-08 44.5 4.1 54 35-92 4-57 (61)
231 COG1041 Predicted DNA modifica 97.0 0.022 4.7E-07 51.9 13.1 99 192-292 195-311 (347)
232 PF09339 HTH_IclR: IclR helix- 97.0 0.00058 1.3E-08 44.4 2.3 44 44-91 6-50 (52)
233 PHA00738 putative HTH transcri 96.9 0.0017 3.6E-08 48.3 4.8 60 41-104 12-71 (108)
234 PF13679 Methyltransf_32: Meth 96.9 0.0035 7.5E-08 50.2 6.6 90 193-289 24-129 (141)
235 smart00346 HTH_ICLR helix_turn 96.9 0.0022 4.8E-08 47.0 5.0 57 43-105 7-64 (91)
236 KOG2915 tRNA(1-methyladenosine 96.9 0.013 2.9E-07 51.1 10.3 106 182-295 94-214 (314)
237 PF02475 Met_10: Met-10+ like- 96.8 0.0019 4E-08 54.8 5.0 90 193-288 100-199 (200)
238 KOG4589 Cell division protein 96.8 0.0074 1.6E-07 49.6 7.7 104 184-292 59-185 (232)
239 PF01022 HTH_5: Bacterial regu 96.7 0.0017 3.6E-08 41.2 3.0 43 43-90 4-46 (47)
240 PF01978 TrmB: Sugar-specific 96.6 0.0014 3E-08 45.3 2.3 56 41-101 8-63 (68)
241 PF01269 Fibrillarin: Fibrilla 96.6 0.0061 1.3E-07 51.8 6.6 132 192-347 71-214 (229)
242 PF04989 CmcI: Cephalosporin h 96.5 0.014 3.1E-07 49.3 8.3 106 183-294 25-150 (206)
243 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.5 0.0025 5.4E-08 56.0 3.8 91 241-345 138-239 (256)
244 PF13412 HTH_24: Winged helix- 96.5 0.0047 1E-07 39.3 4.1 45 42-90 4-48 (48)
245 KOG1663 O-methyltransferase [S 96.5 0.034 7.4E-07 47.4 10.2 97 194-295 73-187 (237)
246 COG4301 Uncharacterized conser 96.5 0.01 2.3E-07 50.9 7.1 97 194-290 78-192 (321)
247 PRK11783 rlmL 23S rRNA m(2)G24 96.4 0.022 4.7E-07 58.1 10.5 111 181-292 177-348 (702)
248 PF03492 Methyltransf_7: SAM d 96.4 0.046 9.9E-07 50.4 11.3 151 192-342 14-250 (334)
249 PF13463 HTH_27: Winged helix 96.4 0.0058 1.3E-07 42.0 4.2 58 45-106 7-68 (68)
250 PF13601 HTH_34: Winged helix 96.3 0.0038 8.2E-08 44.6 3.0 63 42-108 1-67 (80)
251 PF13578 Methyltransf_24: Meth 96.3 0.0011 2.4E-08 50.1 0.2 90 199-291 1-105 (106)
252 PF03059 NAS: Nicotianamine sy 96.3 0.016 3.5E-07 51.4 7.4 96 194-290 120-229 (276)
253 PF02384 N6_Mtase: N-6 DNA Met 96.3 0.01 2.2E-07 54.3 6.5 101 192-292 44-184 (311)
254 TIGR01444 fkbM_fam methyltrans 96.2 0.0058 1.3E-07 48.9 3.9 52 197-248 1-59 (143)
255 TIGR02143 trmA_only tRNA (urac 96.1 0.006 1.3E-07 56.8 4.2 51 196-248 199-256 (353)
256 PF09445 Methyltransf_15: RNA 96.1 0.0018 3.9E-08 52.8 0.6 61 197-259 2-76 (163)
257 TIGR02987 met_A_Alw26 type II 96.1 0.02 4.4E-07 56.4 8.1 66 194-259 31-119 (524)
258 PF07091 FmrO: Ribosomal RNA m 96.1 0.0076 1.6E-07 52.3 4.2 132 193-344 104-243 (251)
259 PRK15090 DNA-binding transcrip 96.0 0.011 2.4E-07 52.5 5.0 58 44-107 17-74 (257)
260 TIGR02337 HpaR homoprotocatech 96.0 0.027 5.9E-07 43.5 6.6 68 40-111 27-97 (118)
261 PF12802 MarR_2: MarR family; 96.0 0.011 2.5E-07 39.7 3.9 48 42-93 6-55 (62)
262 COG1414 IclR Transcriptional r 96.0 0.012 2.5E-07 51.9 5.0 58 44-107 7-65 (246)
263 COG3355 Predicted transcriptio 96.0 0.016 3.4E-07 44.8 5.0 47 44-94 30-77 (126)
264 PF02082 Rrf2: Transcriptional 95.9 0.011 2.5E-07 42.5 3.8 45 55-104 25-69 (83)
265 COG3897 Predicted methyltransf 95.9 0.056 1.2E-06 45.0 8.1 103 189-295 74-183 (218)
266 PRK05031 tRNA (uracil-5-)-meth 95.8 0.012 2.5E-07 55.1 4.7 51 196-248 208-265 (362)
267 PF01047 MarR: MarR family; I 95.8 0.0087 1.9E-07 39.8 2.8 47 43-93 5-51 (59)
268 PF07757 AdoMet_MTase: Predict 95.7 0.011 2.5E-07 43.9 3.3 31 193-225 57-87 (112)
269 PRK10857 DNA-binding transcrip 95.7 0.022 4.7E-07 46.8 5.2 45 54-103 24-68 (164)
270 PRK11569 transcriptional repre 95.7 0.018 3.9E-07 51.7 5.1 57 44-106 31-88 (274)
271 PF14947 HTH_45: Winged helix- 95.7 0.01 2.2E-07 42.1 2.8 57 46-111 11-67 (77)
272 PF04703 FaeA: FaeA-like prote 95.7 0.019 4.1E-07 38.5 3.9 45 45-93 4-49 (62)
273 PF09012 FeoC: FeoC like trans 95.7 0.014 2.9E-07 40.4 3.3 43 46-92 5-47 (69)
274 TIGR02010 IscR iron-sulfur clu 95.6 0.027 5.7E-07 44.7 5.3 46 54-104 24-69 (135)
275 PRK10163 DNA-binding transcrip 95.6 0.021 4.6E-07 51.1 5.1 57 44-106 28-85 (271)
276 TIGR02431 pcaR_pcaU beta-ketoa 95.4 0.023 4.9E-07 50.2 4.7 56 44-107 12-68 (248)
277 PF03602 Cons_hypoth95: Conser 95.4 0.013 2.8E-07 49.2 2.8 94 194-292 42-153 (183)
278 PRK09834 DNA-binding transcrip 95.3 0.03 6.5E-07 49.9 5.1 60 44-109 14-74 (263)
279 KOG0822 Protein kinase inhibit 95.2 0.087 1.9E-06 50.3 8.0 127 156-289 334-476 (649)
280 smart00347 HTH_MARR helix_turn 95.2 0.045 9.7E-07 40.5 5.1 65 42-110 11-78 (101)
281 COG2345 Predicted transcriptio 95.1 0.037 8E-07 47.2 4.9 61 44-108 14-79 (218)
282 COG1959 Predicted transcriptio 95.1 0.037 8.1E-07 44.7 4.7 46 55-105 25-70 (150)
283 cd00092 HTH_CRP helix_turn_hel 95.1 0.074 1.6E-06 36.2 5.7 44 54-104 24-67 (67)
284 COG2520 Predicted methyltransf 95.1 0.16 3.4E-06 46.6 9.1 103 184-296 181-294 (341)
285 PF11312 DUF3115: Protein of u 95.1 0.032 6.9E-07 50.0 4.5 98 195-292 87-243 (315)
286 COG1092 Predicted SAM-dependen 95.0 0.068 1.5E-06 50.1 6.8 99 194-293 217-338 (393)
287 KOG1562 Spermidine synthase [A 95.0 0.052 1.1E-06 48.1 5.6 100 192-292 119-237 (337)
288 TIGR00308 TRM1 tRNA(guanine-26 95.0 0.055 1.2E-06 50.6 6.2 90 196-291 46-147 (374)
289 PRK11512 DNA-binding transcrip 95.0 0.047 1E-06 43.8 5.0 65 42-110 41-108 (144)
290 PF01726 LexA_DNA_bind: LexA D 94.8 0.04 8.7E-07 37.5 3.6 39 51-92 20-59 (65)
291 TIGR02702 SufR_cyano iron-sulf 94.8 0.054 1.2E-06 46.2 5.3 64 43-110 3-71 (203)
292 smart00418 HTH_ARSR helix_turn 94.8 0.071 1.5E-06 35.7 4.9 54 46-104 2-55 (66)
293 smart00419 HTH_CRP helix_turn_ 94.8 0.054 1.2E-06 34.0 4.0 40 55-102 8-47 (48)
294 TIGR00738 rrf2_super rrf2 fami 94.8 0.067 1.4E-06 42.1 5.3 46 54-104 24-69 (132)
295 TIGR00006 S-adenosyl-methyltra 94.8 0.081 1.8E-06 47.8 6.4 66 182-248 9-80 (305)
296 PRK06266 transcription initiat 94.8 0.11 2.4E-06 43.2 6.7 44 45-92 26-69 (178)
297 PF04072 LCM: Leucine carboxyl 94.7 0.15 3.3E-06 42.7 7.6 84 194-277 78-182 (183)
298 TIGR01884 cas_HTH CRISPR locus 94.7 0.061 1.3E-06 45.9 5.2 59 42-105 144-202 (203)
299 KOG2918 Carboxymethyl transfer 94.7 0.28 6E-06 43.9 9.2 147 192-346 85-278 (335)
300 TIGR01889 Staph_reg_Sar staphy 94.7 0.071 1.5E-06 40.5 5.0 67 40-110 24-97 (109)
301 PF04967 HTH_10: HTH DNA bindi 94.7 0.043 9.3E-07 35.6 3.1 41 35-82 6-46 (53)
302 PRK11050 manganese transport r 94.6 0.27 5.9E-06 39.8 8.6 58 46-110 42-99 (152)
303 PF03141 Methyltransf_29: Puta 94.6 0.054 1.2E-06 51.6 4.9 98 192-292 363-468 (506)
304 cd00090 HTH_ARSR Arsenical Res 94.6 0.08 1.7E-06 36.6 4.8 57 43-104 9-65 (78)
305 PRK11920 rirA iron-responsive 94.4 0.071 1.5E-06 43.2 4.8 60 36-104 9-68 (153)
306 PF01795 Methyltransf_5: MraW 94.4 0.089 1.9E-06 47.6 5.7 66 181-247 8-79 (310)
307 PRK03902 manganese transport t 94.4 0.086 1.9E-06 42.2 5.1 55 49-110 16-70 (142)
308 PF08220 HTH_DeoR: DeoR-like h 94.3 0.085 1.8E-06 34.9 4.1 44 45-92 4-47 (57)
309 COG4189 Predicted transcriptio 94.3 0.083 1.8E-06 44.8 5.0 55 34-92 16-70 (308)
310 smart00420 HTH_DEOR helix_turn 94.3 0.098 2.1E-06 33.5 4.5 43 46-92 5-47 (53)
311 COG4190 Predicted transcriptio 94.3 0.073 1.6E-06 40.9 4.2 52 37-92 60-111 (144)
312 PF01638 HxlR: HxlR-like helix 94.2 0.072 1.6E-06 38.9 3.9 61 46-111 10-74 (90)
313 PRK11014 transcriptional repre 94.1 0.09 2E-06 42.0 4.6 60 36-103 9-68 (141)
314 KOG2793 Putative N2,N2-dimethy 94.0 0.3 6.5E-06 42.7 8.0 100 192-294 83-202 (248)
315 PF07109 Mg-por_mtran_C: Magne 94.0 0.21 4.6E-06 36.6 6.0 87 259-357 2-97 (97)
316 COG0116 Predicted N6-adenine-s 94.0 0.46 1E-05 44.1 9.6 110 181-291 179-344 (381)
317 KOG2730 Methylase [General fun 94.0 0.06 1.3E-06 45.6 3.5 54 194-248 94-154 (263)
318 PRK14165 winged helix-turn-hel 94.0 0.11 2.3E-06 44.6 5.1 62 46-111 12-73 (217)
319 TIGR02944 suf_reg_Xantho FeS a 93.8 0.12 2.5E-06 40.7 4.8 44 54-102 24-67 (130)
320 COG4742 Predicted transcriptio 93.8 0.14 3E-06 45.0 5.4 66 37-111 9-74 (260)
321 PRK15431 ferrous iron transpor 93.8 0.16 3.5E-06 35.6 4.7 44 46-93 7-50 (78)
322 COG0144 Sun tRNA and rRNA cyto 93.7 0.76 1.6E-05 42.9 10.7 103 192-294 154-291 (355)
323 PF08461 HTH_12: Ribonuclease 93.6 0.15 3.3E-06 34.8 4.4 58 46-107 3-63 (66)
324 KOG2352 Predicted spermine/spe 93.5 0.4 8.7E-06 45.6 8.4 97 196-293 50-163 (482)
325 KOG4058 Uncharacterized conser 93.5 0.32 7E-06 38.5 6.5 106 183-296 62-177 (199)
326 PHA02943 hypothetical protein; 93.4 0.16 3.5E-06 40.2 4.8 55 45-104 15-69 (165)
327 KOG3924 Putative protein methy 93.2 0.23 5E-06 45.9 6.2 108 184-295 183-312 (419)
328 PF07381 DUF1495: Winged helix 93.1 0.21 4.5E-06 36.3 4.7 68 39-110 7-87 (90)
329 smart00344 HTH_ASNC helix_turn 93.0 0.15 3.3E-06 38.5 4.2 46 42-91 4-49 (108)
330 PRK03573 transcriptional regul 93.0 0.91 2E-05 36.2 8.9 62 46-111 36-101 (144)
331 KOG1099 SAM-dependent methyltr 93.0 0.19 4.2E-06 42.9 4.9 97 189-289 36-161 (294)
332 COG3510 CmcI Cephalosporin hyd 92.9 1.8 3.8E-05 36.1 10.2 103 194-298 69-187 (237)
333 PF06859 Bin3: Bicoid-interact 92.8 0.037 7.9E-07 41.6 0.4 85 254-347 3-94 (110)
334 PF01861 DUF43: Protein of unk 92.6 2.8 6E-05 36.5 11.5 125 194-346 44-179 (243)
335 COG0742 N6-adenine-specific me 92.5 0.57 1.2E-05 39.1 7.0 96 194-291 43-154 (187)
336 PF11899 DUF3419: Protein of u 92.5 0.23 5E-06 46.6 5.3 60 237-296 275-339 (380)
337 PF00325 Crp: Bacterial regula 92.4 0.14 3.1E-06 29.2 2.4 31 55-89 2-32 (32)
338 PF01325 Fe_dep_repress: Iron 92.3 0.25 5.3E-06 33.0 3.9 37 52-92 19-55 (60)
339 PF10672 Methyltrans_SAM: S-ad 92.3 0.14 3.1E-06 45.9 3.5 98 194-292 123-239 (286)
340 PRK06474 hypothetical protein; 92.2 0.28 6.2E-06 40.8 5.0 69 35-107 5-80 (178)
341 COG2265 TrmA SAM-dependent met 92.2 0.23 5E-06 47.4 5.0 98 183-289 283-394 (432)
342 TIGR00373 conserved hypothetic 92.1 0.24 5.3E-06 40.3 4.4 45 44-92 17-61 (158)
343 COG1321 TroR Mn-dependent tran 92.0 0.36 7.7E-06 39.1 5.2 55 49-110 18-72 (154)
344 KOG2187 tRNA uracil-5-methyltr 91.9 0.2 4.2E-06 47.9 4.0 56 191-248 380-442 (534)
345 COG3432 Predicted transcriptio 91.8 0.13 2.7E-06 37.7 2.1 61 47-111 21-83 (95)
346 PRK13777 transcriptional regul 91.5 0.44 9.5E-06 39.9 5.4 64 44-111 48-114 (185)
347 PRK04172 pheS phenylalanyl-tRN 91.5 0.24 5.3E-06 48.3 4.4 69 41-114 6-74 (489)
348 PF05958 tRNA_U5-meth_tr: tRNA 91.4 0.15 3.2E-06 47.5 2.8 61 182-246 186-253 (352)
349 PF10354 DUF2431: Domain of un 91.4 4.6 0.0001 33.1 11.3 120 201-347 3-154 (166)
350 COG1064 AdhP Zn-dependent alco 91.1 1.6 3.5E-05 40.1 9.0 92 192-293 164-261 (339)
351 COG1846 MarR Transcriptional r 90.9 0.46 9.9E-06 36.4 4.8 69 39-111 20-91 (126)
352 cd07153 Fur_like Ferric uptake 90.8 0.62 1.3E-05 35.6 5.3 51 43-93 3-55 (116)
353 COG0275 Predicted S-adenosylme 90.7 0.65 1.4E-05 41.6 5.9 66 181-247 11-83 (314)
354 COG1378 Predicted transcriptio 90.6 0.53 1.1E-05 41.4 5.3 63 40-107 15-77 (247)
355 smart00345 HTH_GNTR helix_turn 90.5 0.4 8.7E-06 31.4 3.6 34 55-92 19-53 (60)
356 TIGR00122 birA_repr_reg BirA b 90.4 0.64 1.4E-05 31.9 4.6 52 44-103 3-54 (69)
357 PRK10870 transcriptional repre 90.3 0.6 1.3E-05 38.8 5.1 65 43-111 57-126 (176)
358 PF06163 DUF977: Bacterial pro 90.0 0.78 1.7E-05 35.2 5.0 50 39-92 10-59 (127)
359 TIGR01610 phage_O_Nterm phage 90.0 0.8 1.7E-05 33.8 5.1 43 55-103 47-89 (95)
360 PLN02853 Probable phenylalanyl 90.0 0.44 9.5E-06 45.8 4.5 70 41-115 3-73 (492)
361 PF07789 DUF1627: Protein of u 89.4 0.59 1.3E-05 36.9 4.0 48 52-103 3-50 (155)
362 PF03514 GRAS: GRAS domain fam 89.3 2 4.3E-05 40.4 8.3 111 183-296 100-248 (374)
363 smart00529 HTH_DTXR Helix-turn 89.2 0.62 1.4E-05 34.2 4.0 46 58-110 2-47 (96)
364 COG1733 Predicted transcriptio 88.9 1.5 3.3E-05 33.8 6.1 78 20-111 11-92 (120)
365 cd07377 WHTH_GntR Winged helix 88.7 1.2 2.7E-05 29.7 5.0 32 56-91 26-57 (66)
366 PRK11169 leucine-responsive tr 88.5 0.65 1.4E-05 38.1 4.1 48 40-91 13-60 (164)
367 PF08279 HTH_11: HTH domain; 88.4 0.62 1.3E-05 30.2 3.2 39 45-87 4-43 (55)
368 PF10007 DUF2250: Uncharacteri 88.4 0.85 1.8E-05 33.3 4.1 47 42-92 8-54 (92)
369 cd08283 FDH_like_1 Glutathione 88.2 3.3 7.1E-05 39.0 9.2 99 192-292 182-307 (386)
370 PRK11179 DNA-binding transcrip 88.2 0.79 1.7E-05 37.1 4.3 47 41-91 9-55 (153)
371 PF06962 rRNA_methylase: Putat 88.2 0.53 1.1E-05 37.3 3.1 74 220-293 1-94 (140)
372 PF05711 TylF: Macrocin-O-meth 88.1 0.86 1.9E-05 40.0 4.7 97 194-291 74-212 (248)
373 KOG1596 Fibrillarin and relate 87.8 2.8 6E-05 36.3 7.3 96 192-291 154-261 (317)
374 PTZ00326 phenylalanyl-tRNA syn 87.4 0.91 2E-05 43.8 4.8 70 41-115 6-76 (494)
375 PF03444 HrcA_DNA-bdg: Winged 87.3 1.5 3.3E-05 30.8 4.6 52 51-107 19-70 (78)
376 PRK05638 threonine synthase; V 87.1 1.1 2.4E-05 43.2 5.3 64 42-110 372-438 (442)
377 PF05971 Methyltransf_10: Prot 86.8 0.96 2.1E-05 40.8 4.4 73 195-267 103-192 (299)
378 COG2512 Predicted membrane-ass 86.8 0.95 2.1E-05 40.0 4.3 47 43-93 197-244 (258)
379 COG2933 Predicted SAM-dependen 86.6 2.1 4.6E-05 37.5 6.0 84 193-284 210-296 (358)
380 PRK01747 mnmC bifunctional tRN 86.5 2.4 5.2E-05 43.2 7.6 96 194-289 57-204 (662)
381 COG1522 Lrp Transcriptional re 86.4 1.1 2.5E-05 36.0 4.3 47 41-91 8-54 (154)
382 PF04182 B-block_TFIIIC: B-blo 86.0 1.1 2.4E-05 31.4 3.5 47 42-92 3-51 (75)
383 PF02002 TFIIE_alpha: TFIIE al 85.7 0.6 1.3E-05 35.1 2.1 43 46-92 18-60 (105)
384 COG1568 Predicted methyltransf 85.4 9.1 0.0002 34.0 9.3 57 46-112 27-83 (354)
385 PRK13699 putative methylase; P 84.6 4.3 9.4E-05 35.2 7.3 76 239-344 2-95 (227)
386 PF12793 SgrR_N: Sugar transpo 84.4 1.4 3.1E-05 33.7 3.7 36 55-94 19-54 (115)
387 PF08221 HTH_9: RNA polymerase 84.3 1.3 2.9E-05 29.7 3.1 43 45-91 17-59 (62)
388 PRK13509 transcriptional repre 84.1 1.6 3.4E-05 38.6 4.4 46 43-92 7-52 (251)
389 PF02153 PDH: Prephenate dehyd 83.9 1.7 3.8E-05 38.5 4.6 77 208-290 1-78 (258)
390 PRK07502 cyclohexadienyl dehyd 83.6 6.2 0.00013 35.9 8.3 91 195-290 6-99 (307)
391 TIGR00498 lexA SOS regulatory 83.4 2.1 4.6E-05 36.2 4.8 33 55-91 25-58 (199)
392 PF14394 DUF4423: Domain of un 83.1 2.5 5.4E-05 34.9 4.9 44 56-106 40-85 (171)
393 PF12324 HTH_15: Helix-turn-he 83.1 1.4 3E-05 30.8 2.8 34 46-83 29-62 (77)
394 COG1497 Predicted transcriptio 83.0 2.3 4.9E-05 36.7 4.6 86 54-147 24-111 (260)
395 PF13730 HTH_36: Helix-turn-he 83.0 1.4 3.1E-05 28.5 2.8 30 56-89 26-55 (55)
396 PF13404 HTH_AsnC-type: AsnC-t 82.9 2.4 5.2E-05 25.9 3.6 36 42-81 4-39 (42)
397 PF11599 AviRa: RRNA methyltra 82.8 7.7 0.00017 33.1 7.6 107 184-291 42-214 (246)
398 COG1565 Uncharacterized conser 82.7 2.3 5E-05 39.2 4.9 65 162-231 50-123 (370)
399 KOG1501 Arginine N-methyltrans 82.6 1.6 3.5E-05 41.0 3.9 90 194-284 66-168 (636)
400 COG0287 TyrA Prephenate dehydr 82.6 7.2 0.00016 35.0 8.0 88 196-289 4-96 (279)
401 PF01189 Nol1_Nop2_Fmu: NOL1/N 82.5 2.4 5.2E-05 38.2 5.0 103 192-294 83-222 (283)
402 COG0640 ArsR Predicted transcr 82.2 3.8 8.2E-05 29.8 5.4 53 37-93 21-73 (110)
403 COG4565 CitB Response regulato 81.9 2 4.4E-05 36.4 3.9 43 46-92 163-206 (224)
404 PRK09424 pntA NAD(P) transhydr 81.8 11 0.00023 37.0 9.4 94 194-292 164-286 (509)
405 PF03686 UPF0146: Uncharacteri 81.6 4.5 9.7E-05 31.4 5.4 87 194-293 13-104 (127)
406 COG1255 Uncharacterized protei 81.5 21 0.00046 27.2 8.7 86 194-292 13-103 (129)
407 PF05206 TRM13: Methyltransfer 81.4 4.3 9.4E-05 36.0 6.1 35 192-226 16-55 (259)
408 PRK09775 putative DNA-binding 81.3 2.2 4.8E-05 41.0 4.5 53 46-105 5-57 (442)
409 PRK04214 rbn ribonuclease BN/u 81.2 2.6 5.6E-05 40.2 5.0 42 54-102 309-350 (412)
410 PRK10906 DNA-binding transcrip 81.1 1.9 4.2E-05 38.1 3.8 47 42-92 6-52 (252)
411 PF13384 HTH_23: Homeodomain-l 81.0 1.6 3.5E-05 27.5 2.5 41 42-88 6-46 (50)
412 PF00392 GntR: Bacterial regul 80.9 2.4 5.3E-05 28.4 3.5 34 55-92 23-57 (64)
413 PRK10742 putative methyltransf 80.7 3.8 8.1E-05 35.9 5.3 45 184-231 77-124 (250)
414 PF13545 HTH_Crp_2: Crp-like h 80.6 2.5 5.5E-05 29.3 3.6 50 36-91 6-60 (76)
415 COG3413 Predicted DNA binding 80.6 1.9 4.1E-05 37.1 3.5 42 34-82 160-201 (215)
416 cd01842 SGNH_hydrolase_like_5 80.6 3.4 7.3E-05 34.1 4.6 40 254-293 52-101 (183)
417 PF11994 DUF3489: Protein of u 79.8 6.2 0.00013 27.2 5.0 53 46-102 15-71 (72)
418 PRK10434 srlR DNA-bindng trans 79.7 2.2 4.8E-05 37.8 3.7 47 42-92 6-52 (256)
419 PF13518 HTH_28: Helix-turn-he 79.6 3.3 7.2E-05 26.2 3.7 39 46-90 5-43 (52)
420 KOG2539 Mitochondrial/chloropl 79.3 5.6 0.00012 37.9 6.3 101 194-294 200-318 (491)
421 TIGR02787 codY_Gpos GTP-sensin 79.3 3.8 8.2E-05 35.5 4.8 44 45-92 187-231 (251)
422 COG1063 Tdh Threonine dehydrog 79.3 13 0.00028 34.6 8.8 93 196-296 170-274 (350)
423 PF05430 Methyltransf_30: S-ad 79.2 3.8 8.3E-05 31.8 4.4 53 271-356 70-122 (124)
424 cd00315 Cyt_C5_DNA_methylase C 78.6 31 0.00067 30.9 10.8 122 197-343 2-141 (275)
425 COG5379 BtaA S-adenosylmethion 78.2 3.5 7.7E-05 36.7 4.3 67 227-293 296-368 (414)
426 PRK12423 LexA repressor; Provi 78.2 3.6 7.9E-05 35.0 4.4 35 55-92 25-59 (202)
427 PRK09954 putative kinase; Prov 78.1 3.4 7.3E-05 38.6 4.6 44 43-90 5-48 (362)
428 TIGR01321 TrpR trp operon repr 78.0 3.5 7.5E-05 30.2 3.6 43 37-84 38-80 (94)
429 PRK09802 DNA-binding transcrip 77.9 2.9 6.3E-05 37.4 3.9 47 42-92 18-64 (269)
430 PRK10411 DNA-binding transcrip 77.4 4.3 9.4E-05 35.5 4.8 44 44-91 7-50 (240)
431 PF02636 Methyltransf_28: Puta 76.9 3.5 7.6E-05 36.4 4.2 27 269-295 172-198 (252)
432 PTZ00357 methyltransferase; Pr 76.9 11 0.00024 38.0 7.6 131 155-286 640-830 (1072)
433 COG1510 Predicted transcriptio 76.1 3.2 7E-05 33.8 3.3 36 54-93 40-75 (177)
434 PF05584 Sulfolobus_pRN: Sulfo 76.0 6.7 0.00015 27.1 4.3 44 44-92 8-51 (72)
435 PF14502 HTH_41: Helix-turn-he 75.9 7 0.00015 24.6 4.0 42 55-100 6-47 (48)
436 PRK11886 bifunctional biotin-- 75.5 4.7 0.0001 37.0 4.7 56 44-105 7-62 (319)
437 KOG1209 1-Acyl dihydroxyaceton 75.4 47 0.001 28.6 10.0 77 193-290 5-85 (289)
438 PRK07417 arogenate dehydrogena 74.6 16 0.00036 32.6 7.9 83 197-287 2-87 (279)
439 PF05732 RepL: Firmicute plasm 74.1 4.1 8.9E-05 33.4 3.5 45 55-106 75-119 (165)
440 COG1675 TFA1 Transcription ini 74.1 5 0.00011 33.1 4.0 44 45-92 22-65 (176)
441 smart00531 TFIIE Transcription 74.0 4.3 9.3E-05 32.6 3.6 42 45-90 5-46 (147)
442 PF02295 z-alpha: Adenosine de 74.0 2.6 5.6E-05 28.7 1.9 60 41-103 4-63 (66)
443 PF08784 RPA_C: Replication pr 73.8 3.8 8.2E-05 30.5 3.0 32 55-90 65-96 (102)
444 TIGR02698 CopY_TcrY copper tra 73.8 7.8 0.00017 30.4 4.9 47 42-92 5-55 (130)
445 KOG2651 rRNA adenine N-6-methy 73.4 5.8 0.00013 36.8 4.6 43 184-227 143-185 (476)
446 KOG0024 Sorbitol dehydrogenase 73.4 30 0.00065 31.6 8.9 96 192-295 167-277 (354)
447 COG1349 GlpR Transcriptional r 72.3 4.7 0.0001 35.7 3.7 46 43-92 7-52 (253)
448 PHA02701 ORF020 dsRNA-binding 71.1 7 0.00015 32.3 4.1 47 42-92 5-52 (183)
449 PF01358 PARP_regulatory: Poly 70.9 12 0.00026 33.4 5.8 50 193-242 57-110 (294)
450 PRK00215 LexA repressor; Valid 70.7 10 0.00022 32.2 5.4 35 55-92 23-57 (205)
451 PF02254 TrkA_N: TrkA-N domain 70.7 21 0.00045 26.8 6.7 81 203-289 4-94 (116)
452 PRK15001 SAM-dependent 23S rib 70.6 21 0.00046 33.5 7.8 89 197-293 47-144 (378)
453 PF01475 FUR: Ferric uptake re 70.4 6 0.00013 30.4 3.6 64 40-103 7-73 (120)
454 COG1339 Transcriptional regula 70.3 7.3 0.00016 32.6 4.1 52 55-110 19-70 (214)
455 KOG1098 Putative SAM-dependent 69.7 7.3 0.00016 38.5 4.6 52 178-229 28-80 (780)
456 PRK00135 scpB segregation and 68.7 11 0.00023 31.7 4.9 42 44-92 93-134 (188)
457 PF00165 HTH_AraC: Bacterial r 68.4 5.1 0.00011 24.2 2.2 25 55-83 8-32 (42)
458 PRK01381 Trp operon repressor; 68.1 8.1 0.00017 28.5 3.5 40 38-82 39-78 (99)
459 PF06557 DUF1122: Protein of u 68.1 9.1 0.0002 31.0 4.1 63 268-347 63-125 (170)
460 COG0686 Ald Alanine dehydrogen 67.8 15 0.00033 33.3 5.8 92 195-289 168-266 (371)
461 PF13814 Replic_Relax: Replica 67.5 12 0.00026 31.2 5.1 62 49-111 3-71 (191)
462 COG1725 Predicted transcriptio 67.4 8.2 0.00018 29.9 3.7 41 55-101 35-75 (125)
463 PRK04424 fatty acid biosynthes 67.4 5.2 0.00011 33.5 2.8 46 42-91 8-53 (185)
464 COG3398 Uncharacterized protei 67.3 12 0.00025 32.0 4.8 51 38-92 98-148 (240)
465 PRK13239 alkylmercury lyase; P 67.2 6.5 0.00014 33.4 3.3 37 43-83 24-60 (206)
466 TIGR02147 Fsuc_second hypothet 66.9 11 0.00023 33.8 4.8 47 55-106 137-183 (271)
467 PF03428 RP-C: Replication pro 66.4 8.2 0.00018 32.0 3.7 42 56-101 71-113 (177)
468 PF02796 HTH_7: Helix-turn-hel 65.8 8.2 0.00018 23.8 2.8 30 46-81 14-43 (45)
469 PF12692 Methyltransf_17: S-ad 65.8 25 0.00055 28.1 6.1 105 183-294 19-137 (160)
470 PF09681 Phage_rep_org_N: N-te 65.8 11 0.00023 29.2 4.0 45 54-105 52-96 (121)
471 PRK08507 prephenate dehydrogen 65.3 27 0.00058 31.1 7.2 84 197-288 2-88 (275)
472 COG5631 Predicted transcriptio 65.2 23 0.0005 28.6 5.7 77 31-110 66-150 (199)
473 PRK09334 30S ribosomal protein 64.5 8.7 0.00019 27.6 3.0 34 55-92 41-74 (86)
474 PF14740 DUF4471: Domain of un 64.4 11 0.00024 33.9 4.4 79 238-343 201-287 (289)
475 PF08222 HTH_CodY: CodY helix- 64.1 12 0.00026 24.4 3.3 33 55-91 4-36 (61)
476 COG4519 Uncharacterized protei 63.7 20 0.00043 25.1 4.5 36 55-94 22-57 (95)
477 TIGR03879 near_KaiC_dom probab 63.1 7.5 0.00016 27.0 2.4 32 55-90 32-63 (73)
478 cd08237 ribitol-5-phosphate_DH 62.9 36 0.00078 31.4 7.8 93 193-292 162-257 (341)
479 PF14338 Mrr_N: Mrr N-terminal 62.9 34 0.00073 24.8 6.1 65 46-113 25-91 (92)
480 PF09904 HTH_43: Winged helix- 62.8 13 0.00028 26.9 3.6 53 45-102 12-68 (90)
481 PF03965 Penicillinase_R: Peni 62.8 13 0.00027 28.3 4.0 51 42-92 4-54 (115)
482 COG0275 Predicted S-adenosylme 62.3 10 0.00023 34.1 3.8 29 268-296 221-249 (314)
483 PRK05225 ketol-acid reductoiso 62.0 9.6 0.00021 36.6 3.7 39 250-293 95-133 (487)
484 PRK10046 dpiA two-component re 62.0 11 0.00024 32.3 4.0 44 45-92 166-210 (225)
485 TIGR00561 pntA NAD(P) transhyd 61.8 21 0.00046 35.0 6.2 92 194-289 163-282 (511)
486 COG2524 Predicted transcriptio 61.6 14 0.0003 32.4 4.3 53 54-111 24-76 (294)
487 TIGR01202 bchC 2-desacetyl-2-h 61.5 42 0.00092 30.4 7.9 85 195-292 145-232 (308)
488 TIGR00006 S-adenosyl-methyltra 61.2 10 0.00022 34.5 3.7 27 268-294 217-243 (305)
489 PHA02591 hypothetical protein; 61.0 13 0.00029 25.9 3.3 32 46-82 51-82 (83)
490 PRK09273 hypothetical protein; 60.9 9.4 0.0002 32.4 3.1 49 196-244 64-112 (211)
491 PF11972 HTH_13: HTH DNA bindi 60.7 20 0.00043 23.3 3.9 46 46-101 4-49 (54)
492 PRK09462 fur ferric uptake reg 60.5 21 0.00046 28.5 5.1 53 40-92 16-71 (148)
493 PRK10736 hypothetical protein; 60.2 13 0.00028 34.9 4.2 52 43-102 310-361 (374)
494 COG3398 Uncharacterized protei 60.0 16 0.00034 31.3 4.2 64 38-105 171-234 (240)
495 TIGR03697 NtcA_cyano global ni 59.9 10 0.00022 31.5 3.3 33 55-91 143-175 (193)
496 PRK11639 zinc uptake transcrip 59.8 24 0.00053 29.0 5.4 53 40-92 25-79 (169)
497 PRK09489 rsmC 16S ribosomal RN 59.7 83 0.0018 29.2 9.5 93 195-293 20-114 (342)
498 PF08484 Methyltransf_14: C-me 59.3 70 0.0015 26.0 7.9 88 194-289 67-157 (160)
499 PRK06545 prephenate dehydrogen 58.4 54 0.0012 30.6 8.2 86 197-287 2-91 (359)
500 PF03297 Ribosomal_S25: S25 ri 58.3 13 0.00028 27.9 3.2 35 55-93 59-93 (105)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=2.3e-45 Score=323.70 Aligned_cols=337 Identities=46% Similarity=0.792 Sum_probs=300.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCc-CCCCCcchHHHHHHHHhcCcceeeeccCC
Q 018366 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLECSVSSG 96 (357)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 96 (357)
+....-.++++.+++..++++.+|+|+|+||.|.+.+ ...|+|..+.. ..+..+..++|+||.|+++++++......
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~--~p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~ 80 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAG--SPSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGG 80 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC--CHHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecc
Confidence 4456678999999999999999999999999999953 38888888773 25567889999999999999999865443
Q ss_pred CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhh
Q 018366 97 ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFN 176 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (357)
. .|++++.++.++..++..++..++...+.+..++.|..+.++++.+..++...+|...++|...+......++++|+.
T Consensus 81 ~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~ 159 (342)
T KOG3178|consen 81 E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSF 159 (342)
T ss_pred e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHH
Confidence 3 899999999888666566888888877778889999999999999999999999988899998888888999999999
Q ss_pred cchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-CCceEEEcCCCCCCCCCCE
Q 018366 177 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-AGVEHVGGNMFDSVPEGDA 255 (357)
Q Consensus 177 ~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~D~~~~~p~~D~ 255 (357)
.+....+.+++.+.+++.....+|+|+|.|..+..++..||+++++.+|+|.+++.+... +.|+.+.+|++++.|.+|+
T Consensus 160 l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 160 LSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence 999998899999988888999999999999999999999999999999999999999887 8899999999999999999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC-CCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI-PEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
||+.++||||+|+++.++|+++++.|+|||+|+++|.+.++. ............+|..|+....+|++|+.+|++.++.
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~ 319 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLP 319 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcch
Confidence 999999999999999999999999999999999999988752 2222234456788888988877899999999999999
Q ss_pred HcCCceeEEeecCCceeEEEEeC
Q 018366 335 AAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 335 ~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
++||.+..+......+++||++|
T Consensus 320 ~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 320 EEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999986
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=5.7e-39 Score=292.57 Aligned_cols=290 Identities=19% Similarity=0.316 Sum_probs=212.4
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCC
Q 018366 34 LPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNK 113 (357)
Q Consensus 34 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~ 113 (357)
-.++|++|+++||||.|.+ ||.|++|||+++++ +++.++|||++|+++|++++ +++.|+||+.+..++.++
T Consensus 3 ~~~~l~aa~~Lglfd~L~~-gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~----~~~~y~~t~~~~~~l~~~ 73 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL----EDGKWSLTEFADYMFSPT 73 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc-CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEe----cCCcEecchhHHhhccCC
Confidence 4579999999999999998 59999999999999 99999999999999999996 258999999999777665
Q ss_pred CCC---chhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHh-hcchhhHHHHHhhc
Q 018366 114 DGV---SLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMF-NHSTIAMERILEHY 189 (357)
Q Consensus 114 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l 189 (357)
++. ++.++..+. .......|.+|.++++. +++|...++ +....++. ..|...|. .......+.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 145 (306)
T TIGR02716 74 PKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQLLLEEA 145 (306)
T ss_pred ccchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHHHHHHHc
Confidence 532 112222221 11233568999999984 444433221 11111222 23344443 33333445567766
Q ss_pred ccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCC-CCCCCCEEEeccc
Q 018366 190 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFD-SVPEGDAILMKWI 261 (357)
Q Consensus 190 ~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~D~i~~~~~ 261 (357)
+ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|++++.+|+++ ++|..|+|+++++
T Consensus 146 ~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~ 224 (306)
T TIGR02716 146 K-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRI 224 (306)
T ss_pred C-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhh
Confidence 6 77888999999999999999999999999999999988887654 2579999999987 6666799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh-hhhhhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL-LDVLLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
+|+|+++.+.++|++++++|+|||+++|.|.+.++.. .+....+... ....+.. . -...++.++|.++|+++||+.
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~e~~~ll~~aGf~~ 301 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMPF-S-VLGFKEQARYKEILESLGYKD 301 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHccccc-c-cccCCCHHHHHHHHHHcCCCe
Confidence 9999998889999999999999999999998876532 2211111111 1111111 0 112345899999999999998
Q ss_pred eEEe
Q 018366 341 INFA 344 (357)
Q Consensus 341 ~~~~ 344 (357)
++++
T Consensus 302 v~~~ 305 (306)
T TIGR02716 302 VTMV 305 (306)
T ss_pred eEec
Confidence 8764
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=3.4e-39 Score=284.44 Aligned_cols=237 Identities=31% Similarity=0.629 Sum_probs=205.5
Q ss_pred CCcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHh
Q 018366 96 GERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMF 175 (357)
Q Consensus 96 ~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (357)
+++.|+||+.++.|+.+++..++..++.+...+.++..|.+|.+++++|.++|...+|.++|+++.++++....|+.+|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 47899999999999988876677777777567889999999999999999999998998899999999999999999999
Q ss_pred hcchhhH-HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCCCCC
Q 018366 176 NHSTIAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGD 254 (357)
Q Consensus 176 ~~~~~~~-~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D 254 (357)
..+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++++|+++++|.+|
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 9888777 67777777 888899999999999999999999999999999999999988888899999999999888899
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCC--CEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDN--GKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~Lkpg--G~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
+|+++++||+|+++++.++|++++++|+|| |+|+|+|.+.++....+........+|+.|+..+ +|++||.+||++|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l 239 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL 239 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence 999999999999999999999999999999 9999999999886554433222358899999987 7999999999999
Q ss_pred HH
Q 018366 333 AI 334 (357)
Q Consensus 333 l~ 334 (357)
|+
T Consensus 240 l~ 241 (241)
T PF00891_consen 240 LK 241 (241)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=1.8e-18 Score=148.56 Aligned_cols=162 Identities=17% Similarity=0.300 Sum_probs=123.7
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-- 253 (357)
.++..+. ..++.+|||||||||..+..+++..+..+++++|+ +.|++.++++ ..|+|+.+|+.+ |+|++
T Consensus 42 ~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF 120 (238)
T COG2226 42 ALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF 120 (238)
T ss_pred HHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence 4444443 44678999999999999999999999899999999 8999998864 238999999999 99986
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh-hhhhc----C---------
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL-LMTRD----G--------- 319 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~--------- 319 (357)
|+|.++..|++++ +..++|++++|+|||||++++.|...+..+... .....+.+. .+-.. .
T Consensus 121 D~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL 195 (238)
T COG2226 121 DAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYL 195 (238)
T ss_pred CEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHH
Confidence 9999999999995 567999999999999999999999877643221 111111111 11110 0
Q ss_pred ---CCccCCHHHHHHHHHHcCCceeEEeecCCcee
Q 018366 320 ---GGRERTKKEFTELAIAAGFKHINFASCVCNLY 351 (357)
Q Consensus 320 ---~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 351 (357)
.-..++.+++..+++++||+.+.......+..
T Consensus 196 ~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238)
T COG2226 196 AESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIV 230 (238)
T ss_pred HHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeE
Confidence 12346899999999999999988666554443
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.79 E-value=8.5e-18 Score=149.34 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=114.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCC-CCCCC--CEEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFD-SVPEG--DAIL 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~p~~--D~i~ 257 (357)
..+..+|||+|||+|.++..+++.. |+.+++++|+ ++|++.++++ .+++++.+|+.+ +++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998875 6679999999 8898877532 368999999987 77764 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh-hhhhh---hhhhcC-----------CCc
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS-LLDVL---LMTRDG-----------GGR 322 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~-----------~~~ 322 (357)
+..++|+++ +..++|++++++|||||++++.|...++.+.. ..... .+... ...... -..
T Consensus 151 ~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFT---TSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHH---HHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 999999995 45789999999999999999999876542110 11100 00000 000000 023
Q ss_pred cCCHHHHHHHHHHcCCceeEEeecCCcee
Q 018366 323 ERTKKEFTELAIAAGFKHINFASCVCNLY 351 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 351 (357)
.++.+++.++++++||+.++......+..
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 57999999999999999998877765544
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.78 E-value=2.1e-19 Score=156.12 Aligned_cols=163 Identities=22% Similarity=0.374 Sum_probs=84.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~- 253 (357)
.+++.+. ..++.+|||+|||||..+..+++.. |+.+++++|+ ++|++.++++ .+|+++.+|+.+ |++++
T Consensus 38 ~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s 116 (233)
T PF01209_consen 38 KLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS 116 (233)
T ss_dssp HHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-
T ss_pred HHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc
Confidence 3444443 4567799999999999999999875 6789999999 8999988752 479999999998 88875
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh----hhhhcC---------
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL----LMTRDG--------- 319 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------- 319 (357)
|+|+++..+|+++| ..+.|++++|+|||||+++|+|...+..+.. ...+..++... ......
T Consensus 117 fD~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~--~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~ 192 (233)
T PF01209_consen 117 FDAVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLL--RALYKFYFKYILPLIGRLLSGDREAYRYLP 192 (233)
T ss_dssp EEEEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHH--HHHHHH------------------------
T ss_pred eeEEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchh--hceeeeeecccccccccccccccccccccc
Confidence 99999999999954 5689999999999999999999987764210 00011111100 000000
Q ss_pred --CCccCCHHHHHHHHHHcCCceeEEeecCCcee
Q 018366 320 --GGRERTKKEFTELAIAAGFKHINFASCVCNLY 351 (357)
Q Consensus 320 --~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 351 (357)
-...++.+++.++++++||+.++..+...+..
T Consensus 193 ~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~ 226 (233)
T PF01209_consen 193 ESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIV 226 (233)
T ss_dssp ----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 01345899999999999999999877765544
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.78 E-value=1.3e-18 Score=153.16 Aligned_cols=155 Identities=14% Similarity=0.208 Sum_probs=115.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhC--CCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCCCEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEGDAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~D~i~~~~~ 261 (357)
.+..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+ +.+..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 355799999999999999999874 7899999999 8898887642 368999999987 5555699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhh--------------hhcCCCccCCHH
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLM--------------TRDGGGRERTKK 327 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~t~~ 327 (357)
+|++++++...+|++++++|||||++++.|.+..+++... ..........+. .........|.+
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN--HLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence 9999988889999999999999999999998765432211 000000000000 000012356999
Q ss_pred HHHHHHHHcCCceeEEeecCCc
Q 018366 328 EFTELAIAAGFKHINFASCVCN 349 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~~~~ 349 (357)
++.++++++||+.++.......
T Consensus 210 ~~~~~l~~aGF~~~~~~~~~~~ 231 (239)
T TIGR00740 210 THKARLKNVGFSHVELWFQCFN 231 (239)
T ss_pred HHHHHHHHcCCchHHHHHHHHh
Confidence 9999999999998776554433
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.76 E-value=2.3e-17 Score=146.68 Aligned_cols=155 Identities=17% Similarity=0.305 Sum_probs=119.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~--D 254 (357)
..+++.++ +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ .+++.++.+|+.+ ++|++ |
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 46777776 6778899999999999999998765 578999998 777777654 2579999999987 67654 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++..+++|++.++...+|++++++|||||++++.+........ .... ... ... .......+.+++.++|+
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~---~~~-~~~--~~~~~~~~~~~~~~~l~ 191 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEE---FKA-YIK--KRKYTLIPIQEYGDLIK 191 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHH---HHH-HHH--hcCCCCCCHHHHHHHHH
Confidence 999999999998778899999999999999999999986543211 1111 111 111 11234568999999999
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
++||+.++.....
T Consensus 192 ~aGF~~v~~~d~~ 204 (263)
T PTZ00098 192 SCNFQNVVAKDIS 204 (263)
T ss_pred HCCCCeeeEEeCc
Confidence 9999999887654
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=5.1e-17 Score=142.38 Aligned_cols=168 Identities=18% Similarity=0.268 Sum_probs=120.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p~~ 253 (357)
+.++..++ ..+..+|||+|||+|.++..+++.. |+.+++++|+ +++++.+++ .++++++.+|+.+ +++.+
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 34555565 5667899999999999999999885 6779999999 788776654 2578999999987 55544
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhh-hhhhhh----------------hh
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARE-TSLLDV----------------LL 314 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~-~~~~~~----------------~~ 314 (357)
|+|++..++|++++ ..++|+++.+.|+|||++++.+...+... ..... ...+.. ..
T Consensus 114 ~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 99999999999854 56899999999999999999887543321 00000 000000 00
Q ss_pred hhhcCCCccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEeC
Q 018366 315 MTRDGGGRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 315 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
.... ....++.+++.++|+++||+++++.... +..+++..+|
T Consensus 189 ~~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 189 LQES-TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHH-HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000 1234688999999999999999988877 4444665554
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=6e-18 Score=149.39 Aligned_cols=153 Identities=14% Similarity=0.198 Sum_probs=113.1
Q ss_pred CCCceEEEEcCCcchHHHHHHh--hCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCCCEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITS--KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEGDAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~D~i~~~~~ 261 (357)
.+..+|||||||+|..+..+++ ..|+.+++++|+ +.|++.++++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 3567999999999999999988 468999999999 8899888652 379999999887 5555699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh-----------h-hhhcCC-CccCCHHH
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL-----------L-MTRDGG-GRERTKKE 328 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~-~~~~t~~e 328 (357)
+|++++++...++++++++|||||.+++.|.+..++...... ....+.++. . .....+ -...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999988888899999999999999999999776543221110 000011100 0 000001 12348999
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
..++|++|||+.+..+..
T Consensus 214 ~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHcCchhHHHHHH
Confidence 999999999998776543
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=1.1e-16 Score=142.28 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=110.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCC-C-CEEEec
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPE-G-DAILMK 259 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~-~-D~i~~~ 259 (357)
..+++.++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+..+. . |+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence 46677776 56678999999999999999999999999999999 889988875 3689999998763333 3 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhh---hhhhhh-hhhhcCCCccCCHHHHHHHHHH
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARET---SLLDVL-LMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
.++||+++ ..+++++++++|||||++++........+......... .+.... ......+....+.+++.++|++
T Consensus 97 ~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 99999964 47899999999999999998643211110000000000 000000 0000012345689999999999
Q ss_pred cCCceeE
Q 018366 336 AGFKHIN 342 (357)
Q Consensus 336 aGf~~~~ 342 (357)
+||++..
T Consensus 175 aGf~v~~ 181 (255)
T PRK14103 175 AGCKVDA 181 (255)
T ss_pred CCCeEEE
Confidence 9998543
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.72 E-value=1.9e-16 Score=146.04 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=109.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC--CEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG--DAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~--D~i~~~~~ 261 (357)
++..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++++ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999987 678999998 7777766541 469999999987 66654 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCC-C-chhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEV-S-SSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
+||+++ ..+++++++++|||||++++.+......... . ........++....... .....+.+++.++++++||.
T Consensus 196 ~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 999954 5689999999999999999988654321111 0 00011111111111111 12235899999999999999
Q ss_pred eeEEeecC
Q 018366 340 HINFASCV 347 (357)
Q Consensus 340 ~~~~~~~~ 347 (357)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
No 13
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.69 E-value=6.4e-16 Score=130.38 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=120.8
Q ss_pred HHHHHHHhhcchhhHHH-HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC------CeEEEeec-hHHHHhCCCC---
Q 018366 168 ETYHKAMFNHSTIAMER-ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ------IKAVNFDL-PHVVQDAPSY--- 236 (357)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~--- 236 (357)
...+++|.--....-++ .+..+. .....++||++||||.++..+++..+. .+++++|+ |+|++.++++
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 44555555433322223 344444 445689999999999999999998877 78999999 9998877542
Q ss_pred ------CCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhh
Q 018366 237 ------AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARET 307 (357)
Q Consensus 237 ------~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~ 307 (357)
.++.++++|..+ |+|++ |.+++...+.+|+ ++.+.|++++|+|||||++.+.|+.--+++ ...++.
T Consensus 153 ~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy 227 (296)
T KOG1540|consen 153 RPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENE---PLKWFY 227 (296)
T ss_pred cCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccH---HHHHHH
Confidence 359999999999 99976 9999999999995 557999999999999999999998543321 111111
Q ss_pred hh--hhh---------------hhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 308 SL--LDV---------------LLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 308 ~~--~~~---------------~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
.. ++. ..+... =.+.++.+++..+.++|||+.+.
T Consensus 228 ~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 228 DQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 11 111 011111 13456899999999999999887
No 14
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=1.1e-15 Score=138.92 Aligned_cols=138 Identities=24% Similarity=0.359 Sum_probs=108.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEEEeccccccCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAILMKWILHCWD 266 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~ 266 (357)
+..+|||||||+|.++..+++..+..+++++|. +++++.+++. .+++++.+|+.+ +++.+ |+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999888889999998 7888877653 578999999887 56553 9999999999996
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh-hhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS-LLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+. ..+|++++++|||||++++++...+.. +... ..+.+ ...++.+++.++|+++||+.+++..
T Consensus 193 d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~-------~~~r~~~~~~-------~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 193 DP--QRGIKEAYRVLKIGGKACLIGPVHPTF-------WLSRFFADVW-------MLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CH--HHHHHHHHHhcCCCcEEEEEEecCcch-------hHHHHhhhhh-------ccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 54 579999999999999999987654321 0111 11111 1235899999999999999998877
Q ss_pred cC
Q 018366 346 CV 347 (357)
Q Consensus 346 ~~ 347 (357)
..
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 54
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=2.8e-15 Score=131.89 Aligned_cols=168 Identities=14% Similarity=0.226 Sum_probs=119.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
.++..+. ..+..+|||+|||+|.++..+++.+| +.+++++|. +.+++.+++. .++.++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4455554 44567999999999999999999987 789999998 6676666542 468899999887 44433
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh----hhhcCC-------
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL----MTRDGG------- 320 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------- 320 (357)
|+|++.+++|+++ +...+|+++.+.|+|||++++++...+.... .......+...+ .....+
T Consensus 121 ~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 121 SFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 9999999999984 4678999999999999999999886544211 000000000000 000001
Q ss_pred -----CccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEeC
Q 018366 321 -----GRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 321 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 224578999999999999999998865 4456777664
No 16
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=9.8e-16 Score=134.03 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=127.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~ 253 (357)
.+.+++.+. ++++.+|||||||.|.++...++.+ +++++++++ +++.+.+++. .++++...|..+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 456788787 8999999999999999999999999 899999998 6666666541 47889888887643336
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|-|++..+++|+..++...+++++++.|+|||++++.....+..+.. ...++...-.++||..++..++....
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998877653221 12222333346799999999999999
Q ss_pred HHcCCceeEEeecC
Q 018366 334 IAAGFKHINFASCV 347 (357)
Q Consensus 334 ~~aGf~~~~~~~~~ 347 (357)
.++||++.+.....
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999988765543
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=1.3e-15 Score=147.38 Aligned_cols=151 Identities=15% Similarity=0.258 Sum_probs=115.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-- 253 (357)
..+++.+. +++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++. .++++..+|+.+ ++|.+
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 45666665 5667899999999999999998876 679999999 7787776542 468999999987 56654
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++..+++|++ +...+|++++++|||||++++.+.......... . .... .. ..+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~-~~--~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEY-IK--QRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHH-HH--hcCCCCCCHHHHHHHH
Confidence 9999999999995 457999999999999999999988654321111 1 1111 11 1245678999999999
Q ss_pred HHcCCceeEEeec
Q 018366 334 IAAGFKHINFASC 346 (357)
Q Consensus 334 ~~aGf~~~~~~~~ 346 (357)
+++||+++.+...
T Consensus 403 ~~aGF~~i~~~d~ 415 (475)
T PLN02336 403 KDAGFDDVIAEDR 415 (475)
T ss_pred HHCCCeeeeeecc
Confidence 9999999877554
No 18
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.66 E-value=4.8e-15 Score=129.03 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=119.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~~--D 254 (357)
.++..+. ..+..+|||+|||+|..+..+++.+|+ .+++++|+ +.+++.+++. .++.++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 4444444 346689999999999999999999986 78999998 6776665542 468999999887 44443 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh---hcC------------
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT---RDG------------ 319 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------ 319 (357)
+|++..++|+.+ +...+|+++++.|+|||++++++...+.... ............+.. ...
T Consensus 109 ~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (223)
T TIGR01934 109 AVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184 (223)
T ss_pred EEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence 999999999984 5678999999999999999999876543210 000000000000000 000
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEeecCCc-eeEEEEeC
Q 018366 320 GGRERTKKEFTELAIAAGFKHINFASCVCN-LYIMEFFK 357 (357)
Q Consensus 320 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vie~~~ 357 (357)
.....+.++|.++|+++||+.+++.+...+ ..+++++|
T Consensus 185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 012357899999999999999999888766 44776664
No 19
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.65 E-value=1.2e-15 Score=125.68 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=97.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCC-C-CEEEeccccccCCh
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPE-G-DAILMKWILHCWDD 267 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~-~-D~i~~~~~lh~~~~ 267 (357)
..+..+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +.+. . |+|++..+|||++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc-
Confidence 34678999999999999999977644 8999998 777776 223333332223 2333 3 9999999999996
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
+...+|+++++.|||||++++.++..... ....... ........ .+...++.++|.++++++||++++
T Consensus 93 -d~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 -DPEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLK-WRYDRPYG-GHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp -HHHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHH-CCGTCHHT-TTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred -cHHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHh-cCCcCccC-ceeccCCHHHHHHHHHHCCCEEEE
Confidence 57899999999999999999999865320 0001111 11111100 245678999999999999999875
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.65 E-value=4.2e-15 Score=134.25 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=107.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC-------CCCCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~D~~~-~~p~~- 253 (357)
.++..+. ..+..+|||||||+|.++..++...+. .++++|. +.++.+++ ...++.+..+++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4555554 344579999999999999999888764 7899997 55554321 23568888888766 33334
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++..+|||++ +...+|++++++|||||.|++.+...+......... ......|.. ....+|.+++.++|
T Consensus 190 D~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhccc---cccCCCHHHHHHHH
Confidence 9999999999995 457899999999999999999877665422111000 000001110 12346899999999
Q ss_pred HHcCCceeEEeec
Q 018366 334 IAAGFKHINFASC 346 (357)
Q Consensus 334 ~~aGf~~~~~~~~ 346 (357)
+++||+.+++...
T Consensus 262 ~~aGF~~V~i~~~ 274 (314)
T TIGR00452 262 EKVGFENFRILDV 274 (314)
T ss_pred HHCCCeEEEEEec
Confidence 9999999987654
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=2.3e-15 Score=137.35 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=107.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC-------CCCCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~D~~~-~~p~~- 253 (357)
.++..++.+ ...+|||||||+|.++..++...+. .++++|. +.++..++ ...++.++.+|+.+ +.+..
T Consensus 113 ~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 345555423 4579999999999999999998765 5999997 44443321 13479999999877 55444
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++..++||.. +...+|+++++.|+|||++++.+...+.+....... ...+ ..|.. ....+|.+++.+++
T Consensus 191 D~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p-~~~y--~~~~~---~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP-GDRY--AKMRN---VYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc-hhHH--hcCcc---ceeCCCHHHHHHHH
Confidence 9999999999985 456899999999999999998766555432211100 0000 00110 11246899999999
Q ss_pred HHcCCceeEEeec
Q 018366 334 IAAGFKHINFASC 346 (357)
Q Consensus 334 ~~aGf~~~~~~~~ 346 (357)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999988754
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.65 E-value=4.3e-15 Score=126.59 Aligned_cols=141 Identities=11% Similarity=0.171 Sum_probs=106.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~- 253 (357)
+.+++.++ ..+..+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. .++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 35566665 445689999999999999999986 468999998 7787776542 458888899876 45544
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++..++|++++++...++++++++|||||++++++....++...+. . -...++.+++.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV---------------G-FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCC---------------C-CCCccCHHHHHHHh
Confidence 9999999999998888999999999999999998877654333210000 0 01235788999998
Q ss_pred HHcCCceeEEe
Q 018366 334 IAAGFKHINFA 344 (357)
Q Consensus 334 ~~aGf~~~~~~ 344 (357)
+ ||+++...
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 7 89987763
No 23
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.65 E-value=2.3e-15 Score=133.73 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=111.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~ 253 (357)
...+++.+. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+..+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 356788777 8888999999999999999999998 789999998 555555432 257999999987622234
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh-hhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS-LLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|.|++..++.|++.++...+++++.++|||||++++...+....+. ..... ..++...-.++|+..++..++...
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~----~~~~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPY----HAERRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHH----HHCTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccc----hhhcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 9999999999999899999999999999999999998777654210 00000 012233333579999999999999
Q ss_pred HHHcCCceeEEeecC
Q 018366 333 AIAAGFKHINFASCV 347 (357)
Q Consensus 333 l~~aGf~~~~~~~~~ 347 (357)
++++||++..+...+
T Consensus 205 ~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 205 AEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHTT-EEEEEEE-H
T ss_pred HhcCCEEEEEEEEcC
Confidence 999999988876653
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.64 E-value=2.4e-15 Score=131.19 Aligned_cols=136 Identities=15% Similarity=0.316 Sum_probs=106.4
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCCCC-CEEEeccccccC
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVPEG-DAILMKWILHCW 265 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~ 265 (357)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999899999998 777766654 2468999999866 45554 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
++ ...+|++++++|||||++++.+...+...... . + .......+.++|.++++++||++++...
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~------~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIE--H------E------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCcccc--c------c------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 54 57999999999999999999887543210000 0 0 0022246899999999999999998877
Q ss_pred cC
Q 018366 346 CV 347 (357)
Q Consensus 346 ~~ 347 (357)
..
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 54
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=1.1e-14 Score=129.67 Aligned_cols=156 Identities=16% Similarity=0.223 Sum_probs=108.9
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCCCCC-CC-CEEE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFDSVP-EG-DAIL 257 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~p-~~-D~i~ 257 (357)
...++..++ .++..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 346777776 66778999999999999999999999999999999 8888888764 678999999876333 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh--hhhhhhhhh-cCCCccCCHHHHHHHHH
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS--LLDVLLMTR-DGGGRERTKKEFTELAI 334 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~t~~e~~~ll~ 334 (357)
++.++|+.++ ...+|++++++|||||++++.-......+.......... .+...+... .......+.+++.+++.
T Consensus 99 ~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 99 ANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 9999999854 468999999999999999885321101000000000000 000000000 00134467889999999
Q ss_pred HcCCce
Q 018366 335 AAGFKH 340 (357)
Q Consensus 335 ~aGf~~ 340 (357)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999874
No 26
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.62 E-value=3.3e-15 Score=123.04 Aligned_cols=172 Identities=14% Similarity=0.189 Sum_probs=126.1
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCCCCCC--CCEEE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFDSVPE--GDAIL 257 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~p~--~D~i~ 257 (357)
+.+++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.|+.. ++++|..+|+.+..|+ .|+++
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 357888888 77889999999999999999999999999999998 8999998764 8999999999986664 39999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc---CCCccCCHHHHHHHHH
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD---GGGRERTKKEFTELAI 334 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll~ 334 (357)
.+.+||+.+|. .++|.++...|.|||.|.+.-+-.-+.+.............+...... ......+...+-++|.
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence 99999999654 699999999999999999976543332221111111100001111000 1334568999999999
Q ss_pred HcCCceeEEeec------CCceeEEEEeC
Q 018366 335 AAGFKHINFASC------VCNLYIMEFFK 357 (357)
Q Consensus 335 ~aGf~~~~~~~~------~~~~~vie~~~ 357 (357)
..+=+ ++++.+ .+...|+|++|
T Consensus 176 ~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 176 PLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred cccce-eeeeeeeccccCCCccchhhhee
Confidence 88744 555443 46677887765
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=6.4e-15 Score=130.86 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=106.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC--CCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD--SVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~p~ 252 (357)
..+++.++ +++.+|||+|||+|.++..+++. +.+++++|+ +++++.+++. ++++++.+|+.+ +.+.
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 34555554 34579999999999999999987 467899998 8888877652 468899999866 2333
Q ss_pred -C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc-hhhhhhh-hhhhh---hhhcCCCccCC
Q 018366 253 -G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS-SARETSL-LDVLL---MTRDGGGRERT 325 (357)
Q Consensus 253 -~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~-~~~~~~~-~~~~~---~~~~~~~~~~t 325 (357)
. |+|++..++|++++ ...+|+++.++|||||+++++............ ...+... ..+.. .... -....+
T Consensus 111 ~~fD~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~ 187 (255)
T PRK11036 111 TPVDLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLD 187 (255)
T ss_pred CCCCEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCC
Confidence 3 99999999999954 468999999999999999987553221000000 0000000 00000 0000 122357
Q ss_pred HHHHHHHHHHcCCceeEEeec
Q 018366 326 KKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~ 346 (357)
++++.++|+++||+++...-.
T Consensus 188 ~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 188 PEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHHCCCeEeeeeeE
Confidence 999999999999999876544
No 28
>PRK08317 hypothetical protein; Provisional
Probab=99.62 E-value=1.5e-14 Score=127.32 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=110.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-- 253 (357)
.+++.+. +.+..+|||+|||+|.++..+++.+ |+.+++++|. +.+++.+++. .++.+..+|+.+ +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 4555555 6677899999999999999999988 7789999998 6766666442 568899999876 55543
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCC-chhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVS-SSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++.++++++++ ...+++++.++|||||++++.+.......... ...........+.. ......+..++.++
T Consensus 89 D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD---HFADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 99999999999954 57899999999999999999886432210000 01111111111111 12333467789999
Q ss_pred HHHcCCceeEEee
Q 018366 333 AIAAGFKHINFAS 345 (357)
Q Consensus 333 l~~aGf~~~~~~~ 345 (357)
++++||+.+++..
T Consensus 164 l~~aGf~~~~~~~ 176 (241)
T PRK08317 164 FREAGLTDIEVEP 176 (241)
T ss_pred HHHcCCCceeEEE
Confidence 9999999876644
No 29
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=1.5e-15 Score=137.69 Aligned_cols=144 Identities=15% Similarity=0.059 Sum_probs=102.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
+..+|||||||+|.++..+++ ++.+++++|. +++++.++.. .+++++.+|+.+ +.+.+ |+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 446999999999999998886 3678999998 7888877642 368899999876 44433 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC----CccCCHHHHHHHHHHcCC
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG----GRERTKKEFTELAIAAGF 338 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~e~~~ll~~aGf 338 (357)
||+++ ...+|++++++|||||.+++.+...... ..................+ .+.++++++.++|+++||
T Consensus 209 eHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVAN--PAEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 99965 4689999999999999999987532110 0000000000001000111 246799999999999999
Q ss_pred ceeEEee
Q 018366 339 KHINFAS 345 (357)
Q Consensus 339 ~~~~~~~ 345 (357)
+++++..
T Consensus 283 ~i~~~~G 289 (322)
T PLN02396 283 DVKEMAG 289 (322)
T ss_pred eEEEEee
Confidence 9988743
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.61 E-value=1.4e-14 Score=130.10 Aligned_cols=145 Identities=19% Similarity=0.326 Sum_probs=108.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG--DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~--D~i~~~~ 260 (357)
+.+..+|||+|||+|..+..+++.. ++.+++++|+ +.+++.+++. +++++..+|+.+ +++++ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4567899999999999888777654 5668999998 8888887652 578999999877 66553 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
++|++++ ..+++++++++|||||++++.+...... .+ ... ..+..+.... .+...+..++.++|+++||..
T Consensus 155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~--~~~--~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGE--LP--EEI--RNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCC--CC--HHH--HHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 9999854 4689999999999999999998765431 11 111 1112222111 344568999999999999999
Q ss_pred eEEee
Q 018366 341 INFAS 345 (357)
Q Consensus 341 ~~~~~ 345 (357)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=2e-15 Score=116.66 Aligned_cols=97 Identities=23% Similarity=0.399 Sum_probs=81.9
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCC-CC-CCCCC-CEEEecc-cc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNM-FD-SVPEG-DAILMKW-IL 262 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~-~~-~~p~~-D~i~~~~-~l 262 (357)
..+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++++++.+|+ .. ..+.. |+|++.. ++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 56999999999999999999999999999999 888877764 26899999999 33 33344 9999999 66
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 263 HCWDD-DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 263 h~~~~-~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 65543 577899999999999999999865
No 32
>PRK06922 hypothetical protein; Provisional
Probab=99.59 E-value=8.2e-15 Score=141.18 Aligned_cols=141 Identities=19% Similarity=0.353 Sum_probs=106.5
Q ss_pred ChhhhcccCcchHHHHHHHHhhcchh--hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHH
Q 018366 155 HIFEYASGNPGFNETYHKAMFNHSTI--AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ 231 (357)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 231 (357)
.+|+++..+++...+|...|...... ........++ +.+..+|||||||+|..+..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 56788888777777776655442221 1111122233 45678999999999999999999999999999999 77888
Q ss_pred hCCCC-----CCceEEEcCCCC-C--CCCC--CEEEeccccccC-----------ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 232 DAPSY-----AGVEHVGGNMFD-S--VPEG--DAILMKWILHCW-----------DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 232 ~a~~~-----~~v~~~~~D~~~-~--~p~~--D~i~~~~~lh~~-----------~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.+++. .+++++.+|..+ + ++.+ |+|+++.++|+| ++++..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 77642 357788899876 3 4443 999999999976 3467889999999999999999999
Q ss_pred eeccCC
Q 018366 291 NSIVPE 296 (357)
Q Consensus 291 e~~~~~ 296 (357)
|.+.++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 876554
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=2e-15 Score=123.46 Aligned_cols=136 Identities=21% Similarity=0.328 Sum_probs=99.4
Q ss_pred CCceEEEEcCCcchHHHHHH-hhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-C--CCCC-CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-S--VPEG-DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~p~~-D~i~~~~~ 261 (357)
+..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++ .++++|..+|+.+ + ++.. |+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56799999999999999999 5678899999999 889988876 2579999999998 4 3334 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh--cCCCccCCHHHHHHHHHHcC
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR--DGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aG 337 (357)
+|+++ +...+|+++.+.|+|||.+++.+......- .........+.+... ...+. +.++|..+|++||
T Consensus 83 l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFP--DPEKVLKNIIRLLKPGGILIISDPNHNDEL----PEQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTS--HHHHHHHHHHHHEEEEEEEEEEEEEHSHHH----HHHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred hhhcc--CHHHHHHHHHHHcCCCcEEEEEECChHHHH----HHHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99995 446899999999999999999988732210 011111111111111 11112 7889999999998
No 34
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.57 E-value=1.9e-14 Score=117.66 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=120.3
Q ss_pred HHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCc
Q 018366 167 NETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGV 239 (357)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v 239 (357)
...|++.|.++.......+-. +-+.+....||+||||||..-...- --|..+++.+|. +.|.+.+.++ ..+
T Consensus 50 t~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 345666666554433333332 3324566789999999998765432 236778999997 7777766442 456
Q ss_pred e-EEEcCCCC-C-CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh
Q 018366 240 E-HVGGNMFD-S-VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL 314 (357)
Q Consensus 240 ~-~~~~D~~~-~-~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 314 (357)
. |+.++..+ + ++++ |+|++..+|+.. ++..+.|++++++|+|||+++++|.+..+...- ...++...+-..
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~--n~i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW--NRILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHH--HHHHHHHhchhh
Confidence 6 78888777 3 5555 999999999988 778899999999999999999999987664211 111122222222
Q ss_pred hhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeEE
Q 018366 315 MTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIM 353 (357)
Q Consensus 315 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi 353 (357)
...+ .|...|.+.| +.|++|-|+..+......+..+.
T Consensus 204 ~~~~-dGC~ltrd~~-e~Leda~f~~~~~kr~~~~ttw~ 240 (252)
T KOG4300|consen 204 HLES-DGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTTWV 240 (252)
T ss_pred heec-cceEEehhHH-HHhhhcccccchhhcccCCceEE
Confidence 2222 6777787777 45688899999887776554433
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.57 E-value=6e-14 Score=119.33 Aligned_cols=141 Identities=10% Similarity=0.103 Sum_probs=103.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D 254 (357)
..+++.++ ..++.+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. -.+.+...|+.. +.+.. |
T Consensus 20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 35556555 445679999999999999999986 468899998 7788766432 136677777755 44444 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|+++.++|++++++...++++++++|||||++++++....+..... . +.....+++++.++|.
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~--~--------------~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH--M--------------PFSFTFKEDELRQYYA 160 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC--C--------------CcCccCCHHHHHHHhC
Confidence 99999999999888889999999999999999888765432210000 0 0122458999999986
Q ss_pred HcCCceeEEe
Q 018366 335 AAGFKHINFA 344 (357)
Q Consensus 335 ~aGf~~~~~~ 344 (357)
+|+++...
T Consensus 161 --~~~~~~~~ 168 (195)
T TIGR00477 161 --DWELLKYN 168 (195)
T ss_pred --CCeEEEee
Confidence 58887765
No 36
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.56 E-value=1.4e-13 Score=122.05 Aligned_cols=147 Identities=13% Similarity=0.172 Sum_probs=105.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAI 256 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i 256 (357)
...+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++. ..+.++.+|+.+ +++++ |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 445666666 345679999999999999988764 468899998 8898888764 346788999987 66654 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
+++.++|+.+ +...+|++++++|+|||++++.......- ......+...... .......+.+++.+++...
T Consensus 108 ~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~-----~el~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~ 178 (251)
T PRK10258 108 WSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSL-----PELHQAWQAVDER--PHANRFLPPDAIEQALNGW 178 (251)
T ss_pred EECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCch-----HHHHHHHHHhccC--CccccCCCHHHHHHHHHhC
Confidence 9999999874 45799999999999999999987643321 0000011000000 1134457899999999988
Q ss_pred CCce
Q 018366 337 GFKH 340 (357)
Q Consensus 337 Gf~~ 340 (357)
|+..
T Consensus 179 ~~~~ 182 (251)
T PRK10258 179 RYQH 182 (251)
T ss_pred Ccee
Confidence 8764
No 37
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.56 E-value=8e-14 Score=123.88 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=82.7
Q ss_pred CCCceEEEEcCCcch----HHHHHHhhCC-----CCeEEEeec-hHHHHhCCCC--------------------------
Q 018366 193 QNVERLVDVGGGFGV----TLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY-------------------------- 236 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 236 (357)
.+..+|+|+|||+|. +++.+.+..+ +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 355799999999996 5666666654 578999999 8889887752
Q ss_pred -------CCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 237 -------AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 237 -------~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+|.|..+|+.+ +.+.+ |+|+|.++||++++++..+++++++++|+|||+|++-..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999998 34343 999999999999988889999999999999999999654
No 38
>PRK05785 hypothetical protein; Provisional
Probab=99.55 E-value=1.6e-13 Score=119.25 Aligned_cols=153 Identities=13% Similarity=0.114 Sum_probs=105.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDH 269 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~ 269 (357)
+..+|||||||||.++..+++.+ +.+++++|+ ++|++.+++. ..++.+|+.+ |++++ |+|++..++|+++ +
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~--d 125 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASD--N 125 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccC--C
Confidence 35799999999999999999887 568999999 8999998754 3567788887 77665 9999999999994 4
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh--hh-hhcCC------------CccCCHHHHHHHHH
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL--LM-TRDGG------------GRERTKKEFTELAI 334 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~------------~~~~t~~e~~~ll~ 334 (357)
..++|++++++|||. +.+++...++... ....+..++... .. ....+ ...++.+++.++++
T Consensus 126 ~~~~l~e~~RvLkp~--~~ile~~~p~~~~--~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~ 201 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ--VGFIAMGKPDNVI--KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFE 201 (226)
T ss_pred HHHHHHHHHHHhcCc--eEEEEeCCCCcHH--HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999993 4455654443210 000011111100 00 00101 13458999999999
Q ss_pred HcCCceeEEeecCCcee-EEEEe
Q 018366 335 AAGFKHINFASCVCNLY-IMEFF 356 (357)
Q Consensus 335 ~aGf~~~~~~~~~~~~~-vie~~ 356 (357)
++| ..++......+.. +..++
T Consensus 202 ~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 202 KYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHh-CceEEEEccccEEEEEEEe
Confidence 984 6677777765544 44444
No 39
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.55 E-value=9.3e-14 Score=120.64 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=106.7
Q ss_pred HHHHhhccc-CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC
Q 018366 183 ERILEHYEG-FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~ 253 (357)
..+++.++. ..+..+|||+|||+|.++..+++. +.+++++|+ ++++..++++ .++.+..+|+.+..+..
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~f 120 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEF 120 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCc
Confidence 344444441 335679999999999999999876 457889998 8888877652 37899999987633233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh--hcCCCccCCHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT--RDGGGRERTKKEFTE 331 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ 331 (357)
|+|++..+++|+++++...+++++.+.+++++.+.+.. .. . .......+...+.. .......++.+++.+
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP----KT---A-WLAFLKMIGELFPGSSRATSAYLHPMTDLER 192 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC----Cc---h-HHHHHHHHHhhCcCcccccceEEecHHHHHH
Confidence 99999999999988888899999999998765554421 10 0 00000011100000 001123468999999
Q ss_pred HHHHcCCceeEEeecCCc
Q 018366 332 LAIAAGFKHINFASCVCN 349 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~ 349 (357)
+++++||+++.......+
T Consensus 193 ~l~~~Gf~v~~~~~~~~~ 210 (219)
T TIGR02021 193 ALGELGWKIVREGLVSTG 210 (219)
T ss_pred HHHHcCceeeeeeccccc
Confidence 999999999988765543
No 40
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=3.1e-13 Score=118.40 Aligned_cols=144 Identities=18% Similarity=0.153 Sum_probs=101.4
Q ss_pred CCCceEEEEcCCcchHHHHHHhh----CCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCC-C-CEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPE-G-DAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~-~-D~i~~~~~ 261 (357)
++..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++. .++++...+... +.+. . |+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999998888753 46679999999 8899888764 456666665433 3333 3 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh-----cCC-----CccCCHHHHHH
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR-----DGG-----GRERTKKEFTE 331 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~t~~e~~~ 331 (357)
|||+++++..++|++++++++ |.+++.+...+.. .+........... ... .+.+|.+++.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-------AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-------HHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 999998888899999999998 6777766544320 0000000000000 001 24579999999
Q ss_pred HHHHcCCceeEEeec
Q 018366 332 LAIAAGFKHINFASC 346 (357)
Q Consensus 332 ll~~aGf~~~~~~~~ 346 (357)
++++ ||++...++.
T Consensus 210 ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 210 LAPQ-GWRVERQWPF 223 (232)
T ss_pred HhhC-CCeEEeccce
Confidence 9999 9998877665
No 41
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=1.1e-14 Score=108.85 Aligned_cols=88 Identities=19% Similarity=0.434 Sum_probs=76.2
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHH
Q 018366 199 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCL 271 (357)
Q Consensus 199 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~ 271 (357)
||+|||+|..+..+++. +..+++++|. +++++.+++. .++.+..+|+.+ +++++ |+|++.+++||+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999999 8889999998 7777777652 457799999988 77765 999999999999 7778
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018366 272 RILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 272 ~~L~~~~~~LkpgG~l~i 289 (357)
+++++++++|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 42
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=1.7e-13 Score=120.54 Aligned_cols=136 Identities=16% Similarity=0.244 Sum_probs=103.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CCCCC--CEEEeccccccCCh
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDD 267 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~ 267 (357)
.+.+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++. +++.++.+|+.+ +.+.. |+|++.+++|+..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence 347999999999999999999999999999998 7777666543 478999999887 55543 9999999999984
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
+...+|++++++|+|||++++.++.... .. ...... . . .+....+.++|.+++.++ |+.+...
T Consensus 113 -~~~~~l~~~~~~L~~~G~l~~~~~~~~~------~~---~~~~~~-~-~-~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 113 -DLSQALSELARVLKPGGLLAFSTFGPGT------LH---ELRQSF-G-Q-HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEeCCccC------HH---HHHHHH-H-H-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4578999999999999999997654322 00 011111 1 0 145567899999999988 8876543
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.51 E-value=6.9e-15 Score=111.08 Aligned_cols=87 Identities=23% Similarity=0.446 Sum_probs=60.0
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C--C---ceEEEcCCCCCCC-CC-CEEEeccccccCC
Q 018366 199 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--G---VEHVGGNMFDSVP-EG-DAILMKWILHCWD 266 (357)
Q Consensus 199 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--~---v~~~~~D~~~~~p-~~-D~i~~~~~lh~~~ 266 (357)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ . . +++...|.....+ .. |+|++.+++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999999999999999999999 8899888764 1 2 3333334333222 24 999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCEE
Q 018366 267 DDHCLRILKNCYKAIPDNGKV 287 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l 287 (357)
++...+|+++++.|||||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 67789999999999999986
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=1.9e-13 Score=132.44 Aligned_cols=145 Identities=15% Similarity=0.257 Sum_probs=110.1
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC---CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD---SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~---~~p~~ 253 (357)
...+++.++ ..+..+|||||||+|.++..+++... +++++|. +.+++.++. .+++.++.+|+.+ ++|..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 346666666 44567999999999999999998753 6888898 778876543 2568899999864 44543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++||+++++..++|+++++.|||||++++.|.......... .. ......++...|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~~--------~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------RK--------NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------cc--------CCCCeecChHHHHH
Confidence 999999999999988889999999999999999999987654321100 00 01233456889999
Q ss_pred HHHHcCCceeEE
Q 018366 332 LAIAAGFKHINF 343 (357)
Q Consensus 332 ll~~aGf~~~~~ 343 (357)
+|.++||.....
T Consensus 169 ~f~~~~~~~~~~ 180 (475)
T PLN02336 169 VFKECHTRDEDG 180 (475)
T ss_pred HHHHheeccCCC
Confidence 999999987643
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.50 E-value=4.3e-13 Score=113.48 Aligned_cols=125 Identities=14% Similarity=0.253 Sum_probs=96.3
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEE
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAIL 257 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~ 257 (357)
+..+. ..+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|...+.+.. |+|+
T Consensus 24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~ 102 (187)
T PRK08287 24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF 102 (187)
T ss_pred HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence 34454 55678999999999999999999999999999999 7777776541 46889989876555544 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
+....++ ...+++.+.+.|+|||++++..... .+.+++.+++++.|
T Consensus 103 ~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g 148 (187)
T PRK08287 103 IGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCG 148 (187)
T ss_pred ECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCC
Confidence 8776544 3568999999999999998844311 12467778999999
Q ss_pred CceeEEee
Q 018366 338 FKHINFAS 345 (357)
Q Consensus 338 f~~~~~~~ 345 (357)
|+.+++..
T Consensus 149 ~~~~~~~~ 156 (187)
T PRK08287 149 VSELDCVQ 156 (187)
T ss_pred CCcceEEE
Confidence 98777544
No 46
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.49 E-value=1.6e-13 Score=124.47 Aligned_cols=104 Identities=11% Similarity=0.226 Sum_probs=82.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-----CC--ceEEEcCCCCC--CC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-----AG--VEHVGGNMFDS--VP 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~--v~~~~~D~~~~--~p 251 (357)
..+++.++ +..+|||+|||+|..+..+++..+ ..+++++|+ ++|++.++++ ++ |.++.+|+.+. ++
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34555444 456899999999999999999987 578999999 7787766542 33 56688999862 32
Q ss_pred C-----C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 252 E-----G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 252 ~-----~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
. . .++++..+++++++++...+|++++++|+|||.++|
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 1 355666789999999999999999999999999986
No 47
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.49 E-value=1.7e-12 Score=108.37 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=117.3
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHH----HHhCCC--CCCc-eEEEcCCCCC-CC---------CC-CEEE
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV----VQDAPS--YAGV-EHVGGNMFDS-VP---------EG-DAIL 257 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~--~~~v-~~~~~D~~~~-~p---------~~-D~i~ 257 (357)
+|||||+|||..+..+++.+|+++..--|. +.. .....+ .+++ .-+..|+.++ .+ .. |.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999999999998755554 222 111111 1332 2344566552 21 13 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
+.|++|-.+.+.+..+++.+.++|+|||.|++.-++..++...+. -...+|.......+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999998766432221 12345544444334567789999999999999
Q ss_pred CceeEEeecCCceeEEEEeC
Q 018366 338 FKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 338 f~~~~~~~~~~~~~vie~~~ 357 (357)
|+.++.+.++.+.-++.++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998877777765
No 48
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=3.4e-13 Score=115.16 Aligned_cols=102 Identities=17% Similarity=0.379 Sum_probs=87.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCCCCCCC--CEEEeccccccCChh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDSVPEG--DAILMKWILHCWDDD 268 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~p~~--D~i~~~~~lh~~~~~ 268 (357)
.+..+|||||||+|..+..+.+..|+.+++++|+ +++++.+++ .+++++..+|+.++++.+ |+|++..+|||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 3567899999999999999999888899999998 889999876 367889999988866554 999999999999888
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
+..++++++.+++ +++++|.|...+.
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 8899999999997 5788888875443
No 49
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.49 E-value=5.9e-13 Score=124.33 Aligned_cols=153 Identities=11% Similarity=0.099 Sum_probs=113.8
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCCCCCCC-CEEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFDSVPEG-DAIL 257 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~p~~-D~i~ 257 (357)
..+++.+. .++..+|||||||+|.++..+++.+ +.+++++|+ +++++.+++. ..+++...|+.+. +.. |.|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEEE
Confidence 34556665 6677899999999999999998875 578999998 7888877653 2477777887543 333 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
+..+++|.++.+...++++++++|||||++++.+...+...... ..+++.. .++++..++.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CC
Confidence 99999999888888999999999999999999876554321110 0111111 135788889999988866 58
Q ss_pred CceeEEeecC
Q 018366 338 FKHINFASCV 347 (357)
Q Consensus 338 f~~~~~~~~~ 347 (357)
|.+.++...+
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9988776544
No 50
>PRK04266 fibrillarin; Provisional
Probab=99.48 E-value=2.4e-12 Score=111.40 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=93.5
Q ss_pred hcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHH----hCCCCCCceEEEcCCCCC-----CCCC-CEE
Q 018366 188 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFDS-----VPEG-DAI 256 (357)
Q Consensus 188 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~p~~-D~i 256 (357)
.++ +++..+|||+|||+|.++..+++..+..+++++|+ +.+++ .+++..++.++.+|..++ +++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 355 66778999999999999999999887668999998 66655 444456799999998653 2233 888
Q ss_pred EeccccccCChh-HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018366 257 LMKWILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 257 ~~~~~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
++ +.+++ ....+|+++++.|||||+++|.=...+.+... ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-------------------~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-------------------DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-------------------CHH-HHHHHHHHHHHH
Confidence 74 33333 33467899999999999999942111110000 000 112344599999
Q ss_pred cCCceeEEeecCC
Q 018366 336 AGFKHINFASCVC 348 (357)
Q Consensus 336 aGf~~~~~~~~~~ 348 (357)
+||+.++......
T Consensus 201 aGF~~i~~~~l~p 213 (226)
T PRK04266 201 GGFEILEVVDLEP 213 (226)
T ss_pred cCCeEEEEEcCCC
Confidence 9999999887753
No 51
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=6.7e-13 Score=119.87 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=102.4
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CEE
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DAI 256 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~i 256 (357)
++..++ ..++.+|||+|||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.. +++.. |+|
T Consensus 112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I 188 (287)
T PRK12335 112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFI 188 (287)
T ss_pred HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEE
Confidence 444444 234469999999999999999885 468999998 7777766532 257788888876 34444 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
++..++|++++++...+++++.+.|+|||+++++.....+....+ .+....+++++++++++
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~-- 250 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ-- 250 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC--
Confidence 999999999888899999999999999999888765433221100 00122357899999997
Q ss_pred CCceeEEe
Q 018366 337 GFKHINFA 344 (357)
Q Consensus 337 Gf~~~~~~ 344 (357)
+|+++...
T Consensus 251 ~~~i~~~~ 258 (287)
T PRK12335 251 DWEIVKYN 258 (287)
T ss_pred CCEEEEEe
Confidence 48888764
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=3e-12 Score=107.57 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=100.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCC-CEEEeccccccCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEG-DAILMKWILHCWD 266 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~ 266 (357)
+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|..+..+.. |+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 346899999999999999999876 7888898 8888776652 35788889987743334 9999998887665
Q ss_pred hh-------------------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 267 DD-------------------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 267 ~~-------------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
++ -...+|+++.+.|||||++++++.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 32 135789999999999999999774321 246
Q ss_pred HHHHHHHHcCCceeEEeecCCceeEEEEe
Q 018366 328 EFTELAIAAGFKHINFASCVCNLYIMEFF 356 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 356 (357)
++.++++++||....+....-..--+.++
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 77889999999988887766555444444
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.45 E-value=1.7e-12 Score=113.57 Aligned_cols=144 Identities=18% Similarity=0.190 Sum_probs=99.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCCCEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEGDAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~D~i~~~~~lh~ 264 (357)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .++.+..+|+.......|+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4567999999999999999998754 5888898 7788777642 3688999984322222399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh-----hcCCCccCCHHHHHHHHHHcCCc
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT-----RDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
+++++...+++++.+.+++++. +.... ..+ . .......... ........+.++|.++++++||+
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~~---~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLI-FTFAP---YTP---L----LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEE-EEECC---ccH---H----HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCc
Confidence 9988999999999997754443 33211 100 0 0011110000 00123446889999999999999
Q ss_pred eeEEeecCCc
Q 018366 340 HINFASCVCN 349 (357)
Q Consensus 340 ~~~~~~~~~~ 349 (357)
+.++.+...+
T Consensus 209 ~~~~~~~~~~ 218 (230)
T PRK07580 209 VVRTERISSG 218 (230)
T ss_pred eEeeeeccch
Confidence 9998776543
No 54
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.45 E-value=6.9e-14 Score=105.99 Aligned_cols=88 Identities=19% Similarity=0.414 Sum_probs=72.7
Q ss_pred EEEEcCCcchHHHHHHhhC---CCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--CEEEec-ccccc
Q 018366 198 LVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG--DAILMK-WILHC 264 (357)
Q Consensus 198 vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~--D~i~~~-~~lh~ 264 (357)
|||+|||+|..+..+.+.+ |+.+++++|+ +++++.+++. .+++++..|+.+ +.+.+ |+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999998 8888877652 478999999987 44443 999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCC
Q 018366 265 WDDDHCLRILKNCYKAIPDNG 285 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG 285 (357)
+++++..++|+++.+.|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999997
No 55
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.44 E-value=2.2e-13 Score=115.97 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=103.0
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------C----CceEEEcCCCCCCCCCCEEEeccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------A----GVEHVGGNMFDSVPEGDAILMKWI 261 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~D~~~~~p~~D~i~~~~~ 261 (357)
.++|||+|||+|-++..|++.. ..++++|. +.+++.|+++ . ++++...|.....+..|+|+|..+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 3689999999999999999985 67888898 8888888763 2 356666666554444699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC----CCccCCHHHHHHHHHHcC
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG----GGRERTKKEFTELAIAAG 337 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~t~~e~~~ll~~aG 337 (357)
++|. ++...+++.+.+.|||||+++|.+....-.. ...-....+........ ..++.++++...++..+|
T Consensus 168 leHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS----~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 168 LEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILS----FAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHH----hhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 9999 6678999999999999999999876432210 00000111111121111 235679999999999999
Q ss_pred CceeEEee
Q 018366 338 FKHINFAS 345 (357)
Q Consensus 338 f~~~~~~~ 345 (357)
+.+..+.-
T Consensus 242 ~~v~~v~G 249 (282)
T KOG1270|consen 242 AQVNDVVG 249 (282)
T ss_pred cchhhhhc
Confidence 98876643
No 56
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.43 E-value=4.4e-13 Score=112.61 Aligned_cols=146 Identities=20% Similarity=0.315 Sum_probs=107.2
Q ss_pred ceEEEEcCCcchHHHHHHhhCCC--CeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC-----CCCC--CEEEecc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS-----VPEG--DAILMKW 260 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-----~p~~--D~i~~~~ 260 (357)
.+||+||||.|.....+++..|+ +++..+|. |..++..+++ .++.....|+..+ .+.+ |+|++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999988 88999998 8888887764 3566666666552 2233 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCC--ccCCHHHHHHHHHHcCC
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGG--RERTKKEFTELAIAAGF 338 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~e~~~ll~~aGf 338 (357)
+|...+++....++++++++|||||.|++.|....+-.... .. ....++........|. ..++.+++..+|++|||
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 99999999999999999999999999999988654310000 00 0011121111211122 34699999999999999
Q ss_pred ceeEE
Q 018366 339 KHINF 343 (357)
Q Consensus 339 ~~~~~ 343 (357)
..++.
T Consensus 231 ~~~~~ 235 (264)
T KOG2361|consen 231 EEVQL 235 (264)
T ss_pred chhcc
Confidence 98765
No 57
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.43 E-value=2.7e-12 Score=112.57 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=101.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHh------CC-CCCCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD------AP-SYAGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~------a~-~~~~v~~~~~D~~~-~~p~~- 253 (357)
.+...++.++ +++|||||||+|.++..++.+.+. .++++|. +....+ .- ....+.+...-+.+ +....
T Consensus 106 rl~p~l~~L~-gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~F 183 (315)
T PF08003_consen 106 RLLPHLPDLK-GKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAF 183 (315)
T ss_pred HHHhhhCCcC-CCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCc
Confidence 4555564343 579999999999999999999765 6899994 221111 11 11233333333333 22233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCch--hhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSS--ARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|+|-.||+|. .+....|+++++.|+|||.+++=..+++.+...... .++. -|.. --..+|...+..
T Consensus 184 DtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-----~m~n---v~FiPs~~~L~~ 253 (315)
T PF08003_consen 184 DTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-----KMRN---VWFIPSVAALKN 253 (315)
T ss_pred CEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-----CCCc---eEEeCCHHHHHH
Confidence 999999999998 455799999999999999999977776654322111 1111 1110 123579999999
Q ss_pred HHHHcCCceeEEeec
Q 018366 332 LAIAAGFKHINFASC 346 (357)
Q Consensus 332 ll~~aGf~~~~~~~~ 346 (357)
|++.+||+.++++..
T Consensus 254 wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 254 WLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHcCCceEEEecC
Confidence 999999999998765
No 58
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.40 E-value=9.4e-13 Score=111.45 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=101.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CC--ceEEEcCCCC-CCC-C-CCEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG--VEHVGGNMFD-SVP-E-GDAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~--v~~~~~D~~~-~~p-~-~D~i~~~~~lh~ 264 (357)
...+|||||||-|.++..+++.. ..++++|. ++.++.|+.+ .. +++.+...++ ... . .|+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 35799999999999999999985 78899998 8888888754 22 4466665555 222 2 299999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhh-hhhhhcCC-----CccCCHHHHHHHHHHcCC
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDV-LLMTRDGG-----GRERTKKEFTELAIAAGF 338 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~t~~e~~~ll~~aGf 338 (357)
.+++ ..+++.+.+.+||||.+++.+..... .......+.. ..+...+. .+...++|+..++.++|+
T Consensus 137 v~dp--~~~~~~c~~lvkP~G~lf~STinrt~------ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDP--ESFLRACAKLVKPGGILFLSTINRTL------KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCH--HHHHHHHHHHcCCCcEEEEeccccCH------HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 9655 57999999999999999998765322 1111111111 11111122 244578999999999999
Q ss_pred ceeEEeec
Q 018366 339 KHINFASC 346 (357)
Q Consensus 339 ~~~~~~~~ 346 (357)
.+.+....
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 98876544
No 59
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.40 E-value=6.1e-12 Score=113.94 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=98.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcCCCCCCCCC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFDSVPEG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~~~p~~-D~i~~~~ 260 (357)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.++++ .++.|...|+.+. +.. |+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-CCCcCEEEEcC
Confidence 3579999999999999999986 468999999 7788776542 2467888887542 333 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC------CccCCHHHHHHHHH
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG------GRERTKKEFTELAI 334 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~ll~ 334 (357)
++||++++....+++.+.+. .+||. +|.. .+. . .. ...+..... ...+ ...+++++++++|+
T Consensus 221 vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~---~-~~---~~~l~~~g~-~~~g~~~~~r~y~~s~eel~~lL~ 288 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLASL-AEKRL-IISF--APK---T-LY---YDILKRIGE-LFPGPSKATRAYLHAEADVERALK 288 (315)
T ss_pred EEEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCc---c-hH---HHHHHHHHh-hcCCCCcCceeeeCCHHHHHHHHH
Confidence 99999888777888888764 55444 4422 111 0 00 001111100 0111 12347999999999
Q ss_pred HcCCceeEEeecCCce---eEEEEeC
Q 018366 335 AAGFKHINFASCVCNL---YIMEFFK 357 (357)
Q Consensus 335 ~aGf~~~~~~~~~~~~---~vie~~~ 357 (357)
++||++....-....+ .++|++|
T Consensus 289 ~AGf~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 289 KAGWKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred HCCCEEEEEEEeecceeHHhhhhhcc
Confidence 9999988765554433 2566543
No 60
>PLN03075 nicotianamine synthase; Provisional
Probab=99.38 E-value=2.5e-12 Score=114.09 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCCceEEEEcCCcchHHHH--HHhhCCCCeEEEeec-hHHHHhCCC--------CCCceEEEcCCCCCCC--CC-CEEEe
Q 018366 193 QNVERLVDVGGGFGVTLSM--ITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFDSVP--EG-DAILM 258 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~~~p--~~-D~i~~ 258 (357)
.++.+|+|||||.|.++.. ++..+|+.+++++|. +++++.|++ .++++|+.+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3678999999998854333 445689999999999 778877664 1579999999987432 23 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. ++|+|+.++..++|+++++.|+|||.+++-.
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999987888999999999999999999944
No 61
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.38 E-value=1.2e-11 Score=114.39 Aligned_cols=107 Identities=22% Similarity=0.291 Sum_probs=85.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCCCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFDSVPE- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~p~- 252 (357)
-+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++. .++++...|.++..+.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 4566676 33346999999999999999999999999999998 6677766541 2678999998875543
Q ss_pred C-CEEEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 253 G-DAILMKWILHC---WDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 253 ~-D~i~~~~~lh~---~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. |+|+++-.+|. ++++...++++.+++.|+|||.++++.
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 99999766653 455567799999999999999999974
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=8.7e-12 Score=104.44 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=72.4
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCC-CCCC-CEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDS-VPEG-DAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~-~p~~-D~i~~~~~lh~~ 265 (357)
..+|||+|||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+. .... |+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 57999999999999999999899999999998 666665543 24699999998772 2223 9998865 5443
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
..+++.+++.|+|||++++..
T Consensus 122 -----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCCCCEEEEEc
Confidence 467888999999999999863
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.37 E-value=6e-12 Score=110.36 Aligned_cols=143 Identities=14% Similarity=0.107 Sum_probs=97.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-C-CC-CC-CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-S-VP-EG-DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~-~p-~~-D~i~~~~~l 262 (357)
.+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. .+++++..|+.+ + .+ .. |+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35679999999999999988876 457888887 6666665531 346777777655 2 12 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhh--hhhhh--hc--CCCccCCHHHHHHHHHHc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLD--VLLMT--RD--GGGRERTKKEFTELAIAA 336 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~--~~~~~--~~--~~~~~~t~~e~~~ll~~a 336 (357)
++.++ ...+|+.+.+.|+|||++++....... ... ...... ..... .. ......+.++|.++++++
T Consensus 125 ~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (233)
T PRK05134 125 EHVPD--PASFVRACAKLVKPGGLVFFSTLNRNL-----KSY-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQA 196 (233)
T ss_pred hccCC--HHHHHHHHHHHcCCCcEEEEEecCCCh-----HHH-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHC
Confidence 99854 568999999999999999987542111 000 000000 00000 00 013456899999999999
Q ss_pred CCceeEEee
Q 018366 337 GFKHINFAS 345 (357)
Q Consensus 337 Gf~~~~~~~ 345 (357)
||++++...
T Consensus 197 Gf~~v~~~~ 205 (233)
T PRK05134 197 GLEVQDITG 205 (233)
T ss_pred CCeEeeeee
Confidence 999987753
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=2.9e-11 Score=111.11 Aligned_cols=107 Identities=17% Similarity=0.294 Sum_probs=84.2
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCC-CEEE
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEG-DAIL 257 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~-D~i~ 257 (357)
+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. -..+++..|.....+.. |+|+
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 445455 23345899999999999999999999999999998 6777777642 23567788887755444 9999
Q ss_pred eccccccC---ChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWILHCW---DDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~lh~~---~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
++-.+|+. ......++++++.+.|||||.++|+..
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999863 234568999999999999999998764
No 65
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.36 E-value=3.8e-11 Score=103.11 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=97.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcCCCCCCC--
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFDSVP-- 251 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~~~p-- 251 (357)
.+..+|||+|||.|..+..|+++ +..++++|+ +..++.+.+ ..+|++..+|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 34579999999999999999986 678999998 666665311 2468899999998321
Q ss_pred -C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018366 252 -E-GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEF 329 (357)
Q Consensus 252 -~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 329 (357)
. .|.|+-..++||++.+.....++++.++|||||++++.....+..... . -....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 2 399999999999999998999999999999999988876654321100 0 0123588999
Q ss_pred HHHHHHcCCceeEEe
Q 018366 330 TELAIAAGFKHINFA 344 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~ 344 (357)
.++|.. +|.+..+.
T Consensus 173 ~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 173 EALYGG-HYEIELLE 186 (213)
T ss_pred HHHhcC-CceEEEEe
Confidence 998874 46655443
No 66
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.35 E-value=2.2e-11 Score=102.29 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=89.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC-CEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG-DAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~ 264 (357)
+..+|||+|||+|..+..++...|+.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 467999999999999999999999999999998 7788776542 458999999877 33223 99998652
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
.+...+++++++.|||||++++.+... ...++.++.++.|+.+.+++
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 345689999999999999999875311 13345666777788877664
Q ss_pred ec
Q 018366 345 SC 346 (357)
Q Consensus 345 ~~ 346 (357)
..
T Consensus 169 ~~ 170 (187)
T PRK00107 169 EL 170 (187)
T ss_pred EE
Confidence 43
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=1.5e-12 Score=107.29 Aligned_cols=136 Identities=18% Similarity=0.275 Sum_probs=98.8
Q ss_pred hcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCCCCCCC--CEEEecc
Q 018366 188 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFDSVPEG--DAILMKW 260 (357)
Q Consensus 188 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~p~~--D~i~~~~ 260 (357)
.++ -....+++|+|||.|.++..|+.++. +.+.+|+ +..++.+++ .++|+++..|+.+..|.+ |+|+++-
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 466 45668999999999999999999973 6788888 778887764 378999999998876765 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 261 ILHCWDD-DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 261 ~lh~~~~-~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
++|++++ ++...+++++.++|+|||.|++.+.-- . ... . -|.....+.+.++|.+. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-~----------------~c~--~-wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-A----------------NCR--R-WGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-H----------------HHH--H-TT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-C----------------ccc--c-cCcccchHHHHHHHHHH-hh
Confidence 9999986 678899999999999999999977521 0 011 1 23444788899999886 77
Q ss_pred eeEEeecC
Q 018366 340 HINFASCV 347 (357)
Q Consensus 340 ~~~~~~~~ 347 (357)
.++.....
T Consensus 174 ~~~~~~~~ 181 (201)
T PF05401_consen 174 EVERVECR 181 (201)
T ss_dssp EEEEEEEE
T ss_pred heeEEEEc
Confidence 77665543
No 68
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.30 E-value=5.7e-11 Score=97.84 Aligned_cols=143 Identities=17% Similarity=0.215 Sum_probs=98.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC---CCCCC--CEEEeccccccCCh
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD---SVPEG--DAILMKWILHCWDD 267 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~p~~--D~i~~~~~lh~~~~ 267 (357)
+..+|||+|||.|.++..|.+. .++++.++++ ++.+..+.+ ..+.++.+|+.+ .+|+. |.|+++.+|.+.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~-- 88 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV-- 88 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH--
Confidence 5689999999999999988886 5888888887 444443332 468899999987 46654 999999999998
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCC----------CCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPE----------IPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
.+..++|+++.|+ |.+.+|.=+-... ++.+........+++ +++-+..|..+++++.++.|
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHCC
Confidence 5567888887665 5455553221100 000000000011111 34566779999999999999
Q ss_pred CceeEEeecCCc
Q 018366 338 FKHINFASCVCN 349 (357)
Q Consensus 338 f~~~~~~~~~~~ 349 (357)
+++++.....++
T Consensus 160 i~I~~~~~~~~~ 171 (193)
T PF07021_consen 160 IRIEERVFLDGG 171 (193)
T ss_pred CEEEEEEEEcCC
Confidence 999998876543
No 69
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.30 E-value=1.2e-11 Score=107.74 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=97.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----C-CceEEEcCCCC-CCC--CC-CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----A-GVEHVGGNMFD-SVP--EG-DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-~v~~~~~D~~~-~~p--~~-D~i~~~~~l 262 (357)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. . ++.+...|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999999888654 5888887 6676665541 2 57888888765 222 33 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh-h----c-CCCccCCHHHHHHHHHHc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT-R----D-GGGRERTKKEFTELAIAA 336 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~t~~e~~~ll~~a 336 (357)
|+.. +...+|+++++.|+|||.+++.....+. ...........+.. . . ......+.+++.++++++
T Consensus 123 ~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVP--DPQAFIRACAQLLKPGGILFFSTINRTP------KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCc------hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 9985 4568999999999999999987642211 00000000000000 0 0 012345889999999999
Q ss_pred CCceeEEee
Q 018366 337 GFKHINFAS 345 (357)
Q Consensus 337 Gf~~~~~~~ 345 (357)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988753
No 70
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.30 E-value=6.9e-12 Score=105.18 Aligned_cols=139 Identities=21% Similarity=0.304 Sum_probs=96.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCC-ceEEEcCCCCCCCC--C-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAG-VEHVGGNMFDSVPE--G-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-v~~~~~D~~~~~p~--~-D~i~~~~~lh 263 (357)
...+.||+|+|.|..+..++...-+ ++..+|. +..++.+++ .++ .++.+.-+.+-.|. . |+||+.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 4679999999999999988665432 5566665 677777663 234 35565555553342 3 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
|++|++..++|++++++|+|+|.|+|-|.+...+. ..+|- ..+.-.|+.+.|+++|++||++++..
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999876431 01110 11344689999999999999999986
Q ss_pred eecC
Q 018366 344 ASCV 347 (357)
Q Consensus 344 ~~~~ 347 (357)
....
T Consensus 200 ~~Q~ 203 (218)
T PF05891_consen 200 EKQK 203 (218)
T ss_dssp EE-T
T ss_pred cccc
Confidence 5543
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.29 E-value=4.7e-11 Score=105.87 Aligned_cols=133 Identities=20% Similarity=0.307 Sum_probs=97.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG--D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~--D 254 (357)
.+++.++ ....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++.. ++++++.+|+.++.+.. |
T Consensus 79 ~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 156 (251)
T TIGR03534 79 AALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFD 156 (251)
T ss_pred HHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCcee
Confidence 3444443 2346899999999999999999999999999998 7777776542 46899999998865543 9
Q ss_pred EEEecccccc------CChh------------------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh
Q 018366 255 AILMKWILHC------WDDD------------------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL 310 (357)
Q Consensus 255 ~i~~~~~lh~------~~~~------------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 310 (357)
+|+++-..+. +..+ ....+++++.+.|+|||++++...
T Consensus 157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------------ 218 (251)
T TIGR03534 157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------------ 218 (251)
T ss_pred EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------------------
Confidence 9998543322 2111 124789999999999999887321
Q ss_pred hhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCC
Q 018366 311 DVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVC 348 (357)
Q Consensus 311 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 348 (357)
....+++.++|+++||+.+++.....
T Consensus 219 ------------~~~~~~~~~~l~~~gf~~v~~~~d~~ 244 (251)
T TIGR03534 219 ------------YDQGEAVRALFEAAGFADVETRKDLA 244 (251)
T ss_pred ------------ccHHHHHHHHHHhCCCCceEEEeCCC
Confidence 01246788999999999888866543
No 72
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.29 E-value=3.2e-11 Score=100.14 Aligned_cols=159 Identities=14% Similarity=0.196 Sum_probs=101.2
Q ss_pred hhcccCcchHHHHHHH----HhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhC
Q 018366 158 EYASGNPGFNETYHKA----MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 233 (357)
Q Consensus 158 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 233 (357)
+.+.++|+....|+.+ +..+....+..+++.+...++...|.|+|||.+.++..+.. ..++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC----
Confidence 3445566655555544 44444455677777776445567999999999999976542 346777886221
Q ss_pred CCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh
Q 018366 234 PSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL 310 (357)
Q Consensus 234 ~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 310 (357)
.+ .++..|+.+ |++++ |++++...|.. .+...+|+++.|.|||||.|.|.|....
T Consensus 105 --n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------------- 162 (219)
T PF05148_consen 105 --NP--RVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------------- 162 (219)
T ss_dssp --ST--TEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------
T ss_pred --CC--CEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc---------------
Confidence 12 467799977 88776 99999988876 4678999999999999999999986421
Q ss_pred hhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 311 DVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 311 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.-+.+++.+.++..||+....-.....+.+.+++|
T Consensus 163 ------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 ------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 12467888999999999988766667777888764
No 73
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.28 E-value=6e-10 Score=96.88 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=110.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCC--CeEEEeec-hHHHHhCCC------CCCc-eEEEcCCCCC--C----CCCCEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPS------YAGV-EHVGGNMFDS--V----PEGDAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~v-~~~~~D~~~~--~----p~~D~i 256 (357)
..+.+||||.||+|.+....+..+|. .++...|. |.-++..++ ...+ +|..+|.++. + |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 67788887 555555543 2344 9999999982 2 233999
Q ss_pred EeccccccCChhH-HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018366 257 LMKWILHCWDDDH-CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 257 ~~~~~lh~~~~~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
+.+.++..|+|.+ +...|+-+.+++.|||+++-..--+.+ ..+.....+.-+......-.+.||..|+.+++++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP-----Qle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP-----QLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEA 288 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc-----chHHHHHHHhcccCCCceEEEecCHHHHHHHHHH
Confidence 9999999999877 446799999999999999985532221 1111111111000000001356899999999999
Q ss_pred cCCceeEEeecC-CceeEEEEeC
Q 018366 336 AGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 336 aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
|||+-++..-.. +=+.|.-++|
T Consensus 289 aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 289 AGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred cCCchhhheeccCCceEEEeecC
Confidence 999977664443 3355655543
No 74
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.28 E-value=4.8e-11 Score=101.54 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=96.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC---CCCCC--CEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD---SVPEG--DAI 256 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~p~~--D~i 256 (357)
+.+.+.++ +..+|||+|||+|.++..+++.. ...++++|+ +++++.++. .+++++.+|+.+ +.+.. |+|
T Consensus 5 ~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 5 ESILNLIP---PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred HHHHHhcC---CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEE
Confidence 34455443 45699999999999999887653 567788998 777777654 358888888865 24433 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh----------hhhhhhhhcCCCccCCH
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL----------LDVLLMTRDGGGRERTK 326 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~t~ 326 (357)
++++++||++ +...+|+++.+.++ .+++.-+.... ........ +...... ..+....+.
T Consensus 80 i~~~~l~~~~--d~~~~l~e~~r~~~---~~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~ 148 (194)
T TIGR02081 80 ILSQTLQATR--NPEEILDEMLRVGR---HAIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTI 148 (194)
T ss_pred EEhhHhHcCc--CHHHHHHHHHHhCC---eEEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccC-CCCcccCcH
Confidence 9999999995 45688998887655 33332111100 00000000 0000000 012356799
Q ss_pred HHHHHHHHHcCCceeEEeecC
Q 018366 327 KEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~~ 347 (357)
+++.++++++||++++.....
T Consensus 149 ~~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 149 ADFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred HHHHHHHHHCCCEEEEEEEec
Confidence 999999999999998876653
No 75
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.28 E-value=1.8e-11 Score=102.11 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=95.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCC-CCCCC-CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~p~~-D~ 255 (357)
.++..++ .-++.++||+|||.|..+..|++. +..++.+|. +..++.+++ .-.|+....|+.+ .++.. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 4555555 445689999999999999999998 567888887 555554432 2248888899987 56655 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
|++..++++++.+...++++++.+.++|||++++...+...+...+ .. ....+.+.|+.+.+.
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~--------~~--------~~f~~~~~EL~~~y~- 160 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP--------SP--------FPFLLKPGELREYYA- 160 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S--------S----------S--B-TTHHHHHTT-
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC--------CC--------CCcccCHHHHHHHhC-
Confidence 9999999999999999999999999999999999766432211000 00 112245678888877
Q ss_pred cCCceeEE
Q 018366 336 AGFKHINF 343 (357)
Q Consensus 336 aGf~~~~~ 343 (357)
||+++..
T Consensus 161 -dW~il~y 167 (192)
T PF03848_consen 161 -DWEILKY 167 (192)
T ss_dssp -TSEEEEE
T ss_pred -CCeEEEE
Confidence 6887764
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.28 E-value=4.7e-11 Score=93.74 Aligned_cols=100 Identities=14% Similarity=0.216 Sum_probs=77.8
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCC---CCCC-
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDS---VPEG- 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~---~p~~- 253 (357)
++..+. ..+..+|||+|||+|.++..+++..|..+++++|. +.+++.+++ ..+++++.+|.... .+..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 445454 45567999999999999999999999889999998 777776543 25688888887642 2233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
|+|++....+ ...++++.+++.|+|||++++.
T Consensus 90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 9999876543 3458999999999999999874
No 77
>PTZ00146 fibrillarin; Provisional
Probab=99.26 E-value=4.1e-10 Score=99.68 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=91.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hH----HHHhCCCCCCceEEEcCCCCCC-----CCC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFDSV-----PEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~~-----p~~-D~i~~~ 259 (357)
+++..+|||+|||+|.++..++.... .-.++.+|+ +. +++.++..++|.++.+|+..+. ... |+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 56778999999999999999999863 457889998 43 6666666678999999986532 123 999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
... + ++...++.++++.|||||+++|.......+...++ ...+. +|. ++|+++||+
T Consensus 210 va~---p-dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~p------------------e~~f~-~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---P-DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKP------------------EVVFA-SEV-QKLKKEGLK 265 (293)
T ss_pred CCC---c-chHHHHHHHHHHhccCCCEEEEEEeccccccCCCH------------------HHHHH-HHH-HHHHHcCCc
Confidence 641 2 34456677899999999999994221111100000 00011 344 888999999
Q ss_pred eeEEeecC
Q 018366 340 HINFASCV 347 (357)
Q Consensus 340 ~~~~~~~~ 347 (357)
.++.+...
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99887765
No 78
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=2.3e-10 Score=98.62 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=97.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcCCCCCCC--
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFDSVP-- 251 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~~~p-- 251 (357)
.+..+|||+|||.|..+..|+++ +..++++|+ +..++.+.. ..+|++..+|+++..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999985 678999998 666665311 2468899999998322
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018366 252 -EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEF 329 (357)
Q Consensus 252 -~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 329 (357)
.. |.|+-..++|+++.+...++++++.++|+|||+++++.....+.... . -....|.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~el 175 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEEV 175 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHHH
Confidence 12 99999999999999999999999999999999866655544322100 0 0123589999
Q ss_pred HHHHHHcCCceeEEee
Q 018366 330 TELAIAAGFKHINFAS 345 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~~ 345 (357)
.++|.. +|.+..+..
T Consensus 176 ~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 176 EALYAG-CFEIELLER 190 (218)
T ss_pred HHHhcC-CceEEEeee
Confidence 999863 366665544
No 79
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.24 E-value=1.7e-11 Score=101.91 Aligned_cols=99 Identities=22% Similarity=0.396 Sum_probs=79.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-CEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-DAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D~i~~~~~lh~ 264 (357)
...+|||+|||+|.++..+++.+|+.+++.+|+ +.+++.+++. ..++++..|.++..+. . |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 457999999999999999999999989999998 7777777542 2388999999986663 3 99999988776
Q ss_pred CCh---hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 WDD---DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ~~~---~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-.+ +-..++++.+.+.|+|||+++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 543 2467999999999999999987553
No 80
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.24 E-value=2.5e-11 Score=103.77 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=80.0
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCC-CC-C--CCCC
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNM-FD-S--VPEG 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~-~~-~--~p~~ 253 (357)
+.+.+.. +..+|||+|||+|..+..+++.+|+.+++++|+ +++++.+++ .++++++.+|+ .. + ++.+
T Consensus 33 ~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 110 (202)
T PRK00121 33 WAELFGN--DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDG 110 (202)
T ss_pred HHHHcCC--CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCcc
Confidence 4444442 457999999999999999999999999999998 778877754 25799999998 33 3 4443
Q ss_pred --CEEEeccccccCCh------hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 --DAILMKWILHCWDD------DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 --D~i~~~~~lh~~~~------~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++....++... .....+|+++++.|||||++++..
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 99988665432211 124689999999999999999965
No 81
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4.6e-10 Score=98.84 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=103.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D 254 (357)
+-+++.++ .....+|+|+|||.|.++..+++.+|+.+++.+|. ...++.+++. .+.++...|..++..+. |
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 34677787 44445999999999999999999999999999998 5566666653 22357778888765554 9
Q ss_pred EEEeccccccCC---hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 255 AILMKWILHCWD---DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 255 ~i~~~~~lh~~~---~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
+|+++=-+|.-- ..-..++++...+.|++||.|.|+-.-. . .+..
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~----------------------------l----~y~~ 274 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH----------------------------L----PYEK 274 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC----------------------------C----ChHH
Confidence 999999998632 2233489999999999999999866411 0 0223
Q ss_pred HHHHcCCceeEEeecCCceeEEEEeC
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.|++. |..+++....+++.|+.++|
T Consensus 275 ~L~~~-Fg~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 275 KLKEL-FGNVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred HHHHh-cCCEEEEEeCCCEEEEEEec
Confidence 34443 66677777778888887765
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.23 E-value=1.7e-10 Score=98.97 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=79.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEcCCCCC---------CCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS---------VPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~p~ 252 (357)
.++.+.+..+++..+|||||||+|.++..+++.. +..+++++|+.++. ..++++++.+|+.++ .+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3455555434567799999999999999999986 45689999985532 235699999999873 333
Q ss_pred -C-CEEEeccccccCChhH---------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 -G-DAILMKWILHCWDDDH---------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 -~-D~i~~~~~lh~~~~~~---------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. |+|++..+.+....+. ...+|+.+++.|||||++++...
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3 9999977766654321 24689999999999999999653
No 83
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=2.7e-10 Score=102.43 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=97.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D~i~~~~~l 262 (357)
..+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++. .++.++.+|++++.+. . |+|+++--.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999998 7777766542 4799999999876553 3 999884321
Q ss_pred cc------CC------------------hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc
Q 018366 263 HC------WD------------------DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD 318 (357)
Q Consensus 263 h~------~~------------------~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (357)
.. .. -+....+++++.+.|+|||++++ +..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g------------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG------------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC-------------------------
Confidence 11 11 12246788999999999999988 210
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEe
Q 018366 319 GGGRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFF 356 (357)
Q Consensus 319 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~ 356 (357)
. ...+++.+++++.||..+++.... +...++.++
T Consensus 240 --~--~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 --Y--DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred --c--hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0 123568889999999977775433 444555444
No 84
>PRK14968 putative methyltransferase; Provisional
Probab=99.21 E-value=6.3e-10 Score=94.10 Aligned_cols=123 Identities=21% Similarity=0.307 Sum_probs=90.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CC-ceEEEcCCCCCCCC-C-CEEEeccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFDSVPE-G-DAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~~~p~-~-D~i~~~~~ 261 (357)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+ +.++.+|+.++++. . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 35568999999999999999988 578889998 7777766431 22 88899998886554 3 99988655
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 262 LHCWD-------------------DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 262 lh~~~-------------------~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+.... ......+++++.+.|||||+++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43311 1234678999999999999998754211
Q ss_pred cCCHHHHHHHHHHcCCceeEEeec
Q 018366 323 ERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
...+++.+++.++||++......
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeec
Confidence 12456788999999998776544
No 85
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=2.8e-11 Score=99.54 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=86.2
Q ss_pred EEeec-hHHHHhCCCC---------CCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 222 VNFDL-PHVVQDAPSY---------AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 222 ~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
+++|. ++|++.|+++ .+++++.+|+.+ +++++ |+|++..++|+++ +..++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 36787 8888877431 368999999988 66654 9999999999994 56799999999999999999
Q ss_pred EEeeccCCCCCCCchhhhhhh-hhhhhhhhcC-----------CCccCCHHHHHHHHHHcCCceeEEeecCCcee
Q 018366 289 VMNSIVPEIPEVSSSARETSL-LDVLLMTRDG-----------GGRERTKKEFTELAIAAGFKHINFASCVCNLY 351 (357)
Q Consensus 289 i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 351 (357)
+.|...++.........+... .-........ -...++.+++.++|+++||+.++......+..
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 999875442100000000000 0000000000 02346899999999999999998877765433
No 86
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.19 E-value=5.6e-10 Score=91.41 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=81.5
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCC---CCCCCE
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDS---VPEGDA 255 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~---~p~~D~ 255 (357)
+..+. +.+..+++|||||+|..+.+++...|..+++.+|. ++.++..+. .+++.++.+|..+. .|..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 55565 67888999999999999999999999999999997 666665543 27899999998773 333499
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|++... .....+|+.+...|||||+|++.-.
T Consensus 106 iFIGGg------~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 106 IFIGGG------GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred EEECCC------CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 999876 2346899999999999999999444
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.18 E-value=5.7e-11 Score=101.00 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=76.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-C---CCCC--CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-S---VPEG--DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~---~p~~--D~i~~~~ 260 (357)
...+|||||||+|.++..+++.+|+..++++|+ +.+++.+++ ..+++++.+|+.+ + .+.+ |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 346999999999999999999999999999998 777776653 2579999999875 1 3443 8888765
Q ss_pred ccccCChhH------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 261 ILHCWDDDH------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 ~lh~~~~~~------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
..++..... ...+++.++++|||||.|++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 443322111 14789999999999999988653
No 88
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=3.4e-10 Score=100.12 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=86.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CC----ceEEEcCCCCCCCCCCEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG----VEHVGGNMFDSVPEGDAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~----v~~~~~D~~~~~p~~D~i~~~~~lh~~ 265 (357)
+..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++. .+ +.+..+|. ..|+|+++...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~--- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA--- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH---
Confidence 5679999999999999887765443 6889998 7788877652 22 22222221 23999875432
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+....+++++.+.|||||++++..... ...+++.+.+++.||++++...
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILE-----------------------------EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------------hhHHHHHHHHHHCCCEEEEEEE
Confidence 345688999999999999999965321 1246778899999999998888
Q ss_pred cCCceeEEE
Q 018366 346 CVCNLYIME 354 (357)
Q Consensus 346 ~~~~~~vie 354 (357)
..+..+++-
T Consensus 239 ~~~W~~~~~ 247 (250)
T PRK00517 239 RGEWVALVG 247 (250)
T ss_pred eCCEEEEEE
Confidence 766666543
No 89
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.17 E-value=8.4e-10 Score=99.51 Aligned_cols=94 Identities=18% Similarity=0.329 Sum_probs=75.2
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEec------
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMK------ 259 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~------ 259 (357)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. .+++++.+|++++++. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 7787777652 3599999999886654 3 999885
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 018366 260 -------WILHCWDD----------DHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 260 -------~~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+++|-|. +....+++++.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333221 2456899999999999998876
No 90
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.16 E-value=6.4e-10 Score=94.43 Aligned_cols=158 Identities=17% Similarity=0.207 Sum_probs=112.9
Q ss_pred hhhcccCcchHHHHHHHHhhcc----hhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHh
Q 018366 157 FEYASGNPGFNETYHKAMFNHS----TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD 232 (357)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 232 (357)
++.+..+|+....|+.+.+... ...+..|++.+..-++...|-|+|||.+.++.. ....+.-+|+-.+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a~--- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVAV--- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccceeeeeeecC---
Confidence 4455677777777776655433 334566777666445678999999999988871 1234666675322
Q ss_pred CCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh
Q 018366 233 APSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309 (357)
Q Consensus 233 a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~ 309 (357)
+-.++..|+.+ |+++. |++++...|.. .+...+++++++.|+|||.+.|.|...
T Consensus 211 -----~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S--------------- 267 (325)
T KOG3045|consen 211 -----NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS--------------- 267 (325)
T ss_pred -----CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh---------------
Confidence 23567789988 77765 99988887765 567899999999999999999988532
Q ss_pred hhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 310 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
++.+...+.+.|...||.+.........+.+.++.|
T Consensus 268 ------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 ------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 112345588899999999887777677777877764
No 91
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.16 E-value=1.6e-10 Score=103.72 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=72.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCC---eEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQI---KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~ 265 (357)
+..+|||+|||+|.++..+++..|.. .++++|+ +.+++.+++. +++.+..+|..+ +++++ |+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 44689999999999999999887753 6799998 8888887654 678999999887 66654 99987543
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
...+++++++|||||+++++.+
T Consensus 161 -----~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -----PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -----CCCHHHHHhhccCCCEEEEEeC
Confidence 1236788999999999999764
No 92
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.15 E-value=2.8e-10 Score=97.58 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=75.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-- 252 (357)
.+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +++++.+++. .+++++.+|..+..+.
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 4555555 55668999999999999999988764 557899998 7777766541 3589999999874432
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
. |+|++..++++++ +++.+.|+|||+|++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 3 9999998887764 3577889999999874
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.15 E-value=1e-09 Score=98.77 Aligned_cols=96 Identities=23% Similarity=0.363 Sum_probs=75.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecc---
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKW--- 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~--- 260 (357)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|++++++. . |+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 456899999999999999999999999999999 7888777642 4689999999876654 3 9999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 018366 261 ----------ILHCWDD----------DHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 261 ----------~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+++.+. +....+++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1121111 2236789999999999999886
No 94
>PHA03411 putative methyltransferase; Provisional
Probab=99.13 E-value=7.5e-10 Score=96.96 Aligned_cols=123 Identities=13% Similarity=0.148 Sum_probs=92.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCCCC-CCC-CEEEeccccccCChhHH
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFDSV-PEG-DAILMKWILHCWDDDHC 270 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~-p~~-D~i~~~~~lh~~~~~~~ 270 (357)
..+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++. ++++++.+|+++.. +.. |+|+++-.+++.+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46999999999999999988887789999998 8888887763 67999999998833 333 99999888887654322
Q ss_pred ------------------HHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 271 ------------------LRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 271 ------------------~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.+.++.+...|+|+|.+.++-. ..+ . + ....+.++++++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys---s~~----------~--------y--~~sl~~~~y~~~ 201 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS---GRP----------Y--------Y--DGTMKSNKYLKW 201 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe---ccc----------c--------c--cccCCHHHHHHH
Confidence 3566777888999997777621 110 0 0 112478999999
Q ss_pred HHHcCCce
Q 018366 333 AIAAGFKH 340 (357)
Q Consensus 333 l~~aGf~~ 340 (357)
++++||..
T Consensus 202 l~~~g~~~ 209 (279)
T PHA03411 202 SKQTGLVT 209 (279)
T ss_pred HHhcCcEe
Confidence 99999975
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.13 E-value=1.5e-09 Score=100.77 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=94.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC-CC-C-C-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS-VP-E-G-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-~p-~-~-D~i~~~~~lh 263 (357)
+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++. .+++++.+|++++ .+ . . |+|+++--..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446999999999999999999999999999999 8888877652 3689999999763 33 2 3 9999854221
Q ss_pred cCC-----------------------hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 264 CWD-----------------------DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 264 ~~~-----------------------~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
.-. -+-...+++.+.+.|+|||++++ |...
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~-------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF-------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence 100 01234777777889999998765 3211
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEE
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEF 355 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~ 355 (357)
...+.+.+++++.||..+++.... +...++.+
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 124578889999999988876654 44555544
No 96
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.12 E-value=1.1e-09 Score=94.52 Aligned_cols=125 Identities=12% Similarity=0.171 Sum_probs=95.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCCCC--CEEEe
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVPEG--DAILM 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p~~--D~i~~ 258 (357)
.+...+|||+|||+|..+..++++.++.+++++++ +.+.+.|++. .|++++..|+.+ ..+.. |+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44578999999999999999999999899999999 7788877652 689999999987 22222 99998
Q ss_pred ccccccCChh----------------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 259 KWILHCWDDD----------------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 259 ~~~lh~~~~~----------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+=-.+.-+.. ...++++.+.+.|||||++.++...-
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------------
Confidence 7666543322 24688999999999999999976411
Q ss_pred cCCHHHHHHHHHHcCCceeEEeec
Q 018366 323 ERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
...++.+++.+.+|...++...
T Consensus 174 --rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 --RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred --HHHHHHHHHHhcCCCceEEEEe
Confidence 1345667778777777665443
No 97
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=8e-10 Score=95.20 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=76.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC-CC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP-EG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p-~~ 253 (357)
..++..+. ..+..+|||||||+|..+..+++.. ++.+++++|+ +++++.+++. .+++++.+|.....+ .+
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34566665 6677899999999999999888875 4568899998 7888777652 479999999887433 33
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++....++.+ +.+.+.|||||++++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 9999987766542 35667899999998853
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.10 E-value=5.6e-10 Score=102.86 Aligned_cols=108 Identities=11% Similarity=0.202 Sum_probs=80.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC---CCCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD---SVPEG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~p~~ 253 (357)
.+++.+. ......+||||||+|.++..+++.+|+..++++|+ +.+++.+.+ ..++.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4555554 23345899999999999999999999999999998 667665543 2579999999754 45554
Q ss_pred --CEEEeccccccCChhH----HHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 --DAILMKWILHCWDDDH----CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~----~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|.|++.....+....+ ...+|+.++++|+|||.+.+..-
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9998765433211111 25899999999999999999664
No 99
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.09 E-value=1.6e-09 Score=92.38 Aligned_cols=98 Identities=14% Similarity=0.242 Sum_probs=75.0
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CCCC
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VPEG 253 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p~~ 253 (357)
+..+. ..+..+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++. .++.++.+|+.+. .+..
T Consensus 33 l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 33 LSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 34455 5677899999999999999998764 5678999998 7787766431 4688888998762 2233
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
|.|++... ..+...+|+.+.+.|||||++++
T Consensus 112 ~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 112 FDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99988542 24567899999999999999986
No 100
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.07 E-value=3.9e-09 Score=95.86 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=74.7
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecc-----
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKW----- 260 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~----- 260 (357)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. .+++++.+|+++..+. . |+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 8888877652 4699999999876554 3 9999851
Q ss_pred --------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 018366 261 --------ILHCWDD----------DHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 261 --------~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+++.|. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122211 2346889999999999999887
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.07 E-value=1e-09 Score=94.90 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=75.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP--E 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p--~ 252 (357)
..+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|. +++++.+++. .+++++.+|..+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 66778999999999999999998864 467888887 8888777642 578999999877333 2
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
. |+|++....++. .+.+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 3 999987765544 34577899999999884
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.06 E-value=1.1e-09 Score=93.46 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=77.3
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC---CCCC-C
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD---SVPE-G 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~p~-~ 253 (357)
+++.++ ..+..+|||+|||+|.++..+++..|+.+++++|. +.+++.+++. .+++++.+|+.+ .... .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 455555 55678999999999999999998888889999998 8888776542 468999998865 2222 2
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|.+++.. ......+++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6655421 13457899999999999999999764
No 103
>PRK14967 putative methyltransferase; Provisional
Probab=99.05 E-value=4.9e-09 Score=91.17 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=73.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCC-C-CEEEeccccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPE-G-DAILMKWILH 263 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~-~-D~i~~~~~lh 263 (357)
..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. .++.++.+|+.+..+. . |+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4456799999999999999988763 347889998 7777765542 2478888998775544 3 9999864322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 264 CWDD-------------------DHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 264 ~~~~-------------------~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.-+. .....+++++.+.|||||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2111 124568899999999999999876543
No 104
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.03 E-value=3.3e-09 Score=102.73 Aligned_cols=131 Identities=15% Similarity=0.260 Sum_probs=94.7
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecc----
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKW---- 260 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~---- 260 (357)
..+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. +++.++.+|+++..+. . |+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 7788877642 4689999998875544 3 9999832
Q ss_pred ----------ccccCC------h----hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 261 ----------ILHCWD------D----DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 261 ----------~lh~~~------~----~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
+..+.| . +....+++.+.+.|+|||.+++ |...
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-------------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-------------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------------------------
Confidence 111111 0 1235678889999999999876 3211
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEE
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEF 355 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~ 355 (357)
...+.+.+++.+.||..+++.... +...++.+
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 124567788888999988776654 33445544
No 105
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.02 E-value=2.5e-09 Score=96.52 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC-CEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG-DAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~-D~i~~~~~lh~ 264 (357)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. .++.+...|.....+.. |+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4579999999999999888765 4458899998 7777777652 24556656533322333 999986543
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+....+++++.+.|||||++++...
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3456899999999999999998654
No 106
>PRK04457 spermidine synthase; Provisional
Probab=99.02 E-value=1.4e-09 Score=96.67 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC---CCCCC-CEEEecc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD---SVPEG-DAILMKW 260 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~---~~p~~-D~i~~~~ 260 (357)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .++++++.+|..+ ..+.. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 888887764 2679999999865 23334 9998742
Q ss_pred cccc--CChh-HHHHHHHHHHHhCCCCCEEEEE
Q 018366 261 ILHC--WDDD-HCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 261 ~lh~--~~~~-~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++. .+.. ...++++++++.|+|||++++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 222 1111 1369999999999999999984
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.99 E-value=3.5e-09 Score=89.60 Aligned_cols=103 Identities=16% Similarity=0.276 Sum_probs=74.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEcCCCCC---------CCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS---------VPE- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~p~- 252 (357)
++...+....+..+|||+|||+|.++..+++.+ +..+++++|+.+.. ..++++++.+|+.++ .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445445677899999999999999999887 56789999984432 235688898998762 233
Q ss_pred C-CEEEeccccc---cCC------hhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 253 G-DAILMKWILH---CWD------DDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh---~~~------~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
. |+|++....| .|. .+....+|+.+.+.|+|||++++.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 3 9999854322 111 122468999999999999999985
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.98 E-value=1.4e-08 Score=89.67 Aligned_cols=128 Identities=19% Similarity=0.144 Sum_probs=89.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCCCCC----CC-CEEEeccccc-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFDSVP----EG-DAILMKWILH- 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~p----~~-D~i~~~~~lh- 263 (357)
+..+|||+|||+|.++..+++..|..+++++|+ +.+++.++++ .+++++.+|+++..+ .. |+|+++--..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 345899999999999999999999889999998 8888877653 346889999887433 23 9998764221
Q ss_pred -----cCCh------------------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 264 -----CWDD------------------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 264 -----~~~~------------------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
..++ +-...+++.+.+.|+|||++++.... +
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~--~------------------------ 219 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE--R------------------------ 219 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--c------------------------
Confidence 1111 11347888888999999999974310 0
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeecCCceeE
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASCVCNLYI 352 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 352 (357)
..+++..++++.||...-... ...+.+
T Consensus 220 ----~~~~v~~~l~~~g~~~~~~~~-~~~~~~ 246 (251)
T TIGR03704 220 ----QAPLAVEAFARAGLIARVASS-EELYAT 246 (251)
T ss_pred ----hHHHHHHHHHHCCCCceeeEc-ccccce
Confidence 134567788889988544433 333443
No 109
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.98 E-value=1.6e-09 Score=91.43 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=69.3
Q ss_pred CCceEEEEcCCcch----HHHHHHhh----CC-CCeEEEeec-hHHHHhCCCC---------------------------
Q 018366 194 NVERLVDVGGGFGV----TLSMITSK----YP-QIKAVNFDL-PHVVQDAPSY--------------------------- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~----~~~~l~~~----~p-~~~~~~~D~-~~~~~~a~~~--------------------------- 236 (357)
+..+|+..||++|. +++.+.+. .+ +.++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999994 33333441 12 457788888 7788877641
Q ss_pred -------CCceEEEcCCCC-CCCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 237 -------AGVEHVGGNMFD-SVPE-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 237 -------~~v~~~~~D~~~-~~p~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+|.|..+|+.+ +.+. . |+|+|.|||-+++++...++++++++.|+|||+|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 358999999998 3333 3 999999999999999999999999999999999999543
No 110
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=5.2e-09 Score=78.58 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=74.5
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC------CCCCceEEEcCCCCCC---CCC-CEEEeccccccC
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------SYAGVEHVGGNMFDSV---PEG-DAILMKWILHCW 265 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~D~~~~~---p~~-D~i~~~~~lh~~ 265 (357)
+|+|+|||+|..+..+++ .+..+++++|. +..+..++ ...++.+..+|+.+.. +.. |+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 66778999998 55555443 1256889999988832 233 999999999984
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.+....+++++.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 367789999999999999999875
No 111
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.95 E-value=1.2e-08 Score=93.96 Aligned_cols=106 Identities=15% Similarity=0.066 Sum_probs=75.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-- 253 (357)
.++.... +++..+|||+|||+|.++.+.+.. ..+++++|+ +.++..++.. ..+.+..+|+.+ +.+..
T Consensus 173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 3444333 567789999999999998886654 567888898 7777765532 347889999987 55433
Q ss_pred CEEEeccccc-------cCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 DAILMKWILH-------CWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 D~i~~~~~lh-------~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++.--.. +...+...++|+.+++.|||||+++++.+
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 9999853211 11113357899999999999999998653
No 112
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.1e-08 Score=90.84 Aligned_cols=126 Identities=20% Similarity=0.266 Sum_probs=87.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCce----EEEcCCCCCCC--CCCEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVE----HVGGNMFDSVP--EGDAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~----~~~~D~~~~~p--~~D~i~~~~~l 262 (357)
.++.+|||+|||+|.++++.++.... +++++|+ |..++.+++. ++|. ....+...... ..|+|+++= |
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 36789999999999999998887543 6888888 7777776653 3444 22223222112 229988643 4
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
= +-...+...+++.+||||++++.-.... ..+.+.+.+.++||.+++
T Consensus 239 A----~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 239 A----EVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred H----HHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEeE
Confidence 2 3346889999999999999999553211 255677888999999999
Q ss_pred EeecCCceeEE
Q 018366 343 FASCVCNLYIM 353 (357)
Q Consensus 343 ~~~~~~~~~vi 353 (357)
+....+...++
T Consensus 286 ~~~~~eW~~i~ 296 (300)
T COG2264 286 VLEREEWVAIV 296 (300)
T ss_pred EEecCCEEEEE
Confidence 88876555543
No 113
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.95 E-value=1.6e-09 Score=90.55 Aligned_cols=147 Identities=13% Similarity=0.178 Sum_probs=101.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCce-EEEc---CCCCCC-CCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVE-HVGG---NMFDSV-PEG-D 254 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~-~~~~---D~~~~~-p~~-D 254 (357)
..+++...+ ..+..++||+|||||..+..+...-. +.+++|+ ..|++.+.+++-.. +... +|.... ++. |
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 345555555 44578999999999999888877654 4667888 78999988753211 1111 233322 223 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|+...||.++ -+...++.-+...|+|||.+.+.-...+.+.... +.-. -...++..-+++.++
T Consensus 191 Li~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~--------l~ps------~RyAH~~~YVr~~l~ 254 (287)
T COG4976 191 LIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFV--------LGPS------QRYAHSESYVRALLA 254 (287)
T ss_pred chhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCee--------cchh------hhhccchHHHHHHHH
Confidence 99999999998 5677899999999999999998766655532110 0000 111235677889999
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
..||.++++.+++
T Consensus 255 ~~Gl~~i~~~~tt 267 (287)
T COG4976 255 ASGLEVIAIEDTT 267 (287)
T ss_pred hcCceEEEeeccc
Confidence 9999999987764
No 114
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.93 E-value=1.6e-08 Score=90.17 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=76.4
Q ss_pred CCceEEEEcCCcch----HHHHHHhhCC----CCeEEEeec-hHHHHhCCCC----------------------------
Q 018366 194 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 236 (357)
+..+|...||+||. +++.+.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999994 3444444332 467888998 7777766531
Q ss_pred ---------CCceEEEcCCCC-CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 237 ---------AGVEHVGGNMFD-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 237 ---------~~v~~~~~D~~~-~~p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+|.|..+|+.+ +.| .. |+|+|.++|.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 237888999988 444 33 99999999999999999999999999999999988854
No 115
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.92 E-value=2.3e-08 Score=86.01 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=82.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------------------CCCceEEEcCCCC-CC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFD-SV-P 251 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~-~~-p 251 (357)
.+..+||+.|||.|.-+..|++. +.+++++|+ +..++.+.+ ..++++.++|+++ +. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999987 567999998 666666311 1468999999998 32 1
Q ss_pred ---CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 252 ---EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 252 ---~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.. |+|+=..+|++++++...+..+++.++|+|||.++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 12 99999999999999999999999999999999999887643
No 116
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.91 E-value=1.5e-08 Score=87.29 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=92.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCCCC-CEEEeccccccCChhHHHH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEG-DAILMKWILHCWDDDHCLR 272 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~~~~~~~ 272 (357)
...++||||+|.|..+..++..+..+.++... +.|..+.++ .+++++..|-....+.. |+|.|.|+|... ++...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc--~~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRC--DRPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhcc--CCHHH
Confidence 45689999999999999999999886666666 778777665 33455444322222223 999999999988 55679
Q ss_pred HHHHHHHhCCCCCEEEEEeec--c---CCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 273 ILKNCYKAIPDNGKVIVMNSI--V---PEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 273 ~L~~~~~~LkpgG~l~i~e~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
+|+.++++|+|+|++++.=.. . +.++ +. ..+....++ ......+-....+-+.|+.+||++++....+
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~-g~-~~~P~e~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGG-GK-SNRPSELLP-----VKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCC-CC-CCCchhhcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 999999999999999874321 1 1111 00 000011111 0101111122334488999999999887765
No 117
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.90 E-value=2.4e-08 Score=85.98 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=99.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC---C---------------CCCceEEEc
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---S---------------YAGVEHVGG 244 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~~v~~~~~ 244 (357)
.+++.+. .....+||..|||.|.-+..|++. +..++++|+ +..++.+. . ..+|++.++
T Consensus 28 ~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 28 EYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 3444444 456679999999999999999987 568999999 66666641 1 136889999
Q ss_pred CCCC-CCCC--C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 245 NMFD-SVPE--G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 245 D~~~-~~p~--~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
|+++ +... . |+|+=..+|+.++++...+..+++.++|+|||+++++....+..... ..
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~------------------GP 166 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME------------------GP 166 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS------------------SS
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC------------------Cc
Confidence 9999 2222 2 99999999999999999999999999999999966655544332100 01
Q ss_pred CccCCHHHHHHHHHHcCCceeEEee
Q 018366 321 GRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
....+.+++.++|. .+|++.....
T Consensus 167 Pf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 167 PFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp S----HHHHHHHHT-TTEEEEEEEE
T ss_pred CCCCCHHHHHHHhc-CCcEEEEEec
Confidence 11247899999999 7898776644
No 118
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.90 E-value=2.3e-09 Score=83.22 Aligned_cols=96 Identities=22% Similarity=0.317 Sum_probs=74.8
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-C--CCCC--CEEEecccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-S--VPEG--DAILMKWIL 262 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~--~p~~--D~i~~~~~l 262 (357)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. ..+++++.+|+.+ . .+.. |+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 778899998 777776654 2579999999887 2 4443 999997766
Q ss_pred ccCC------hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 263 HCWD------DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 263 h~~~------~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+... .+....+++++.+.|||||.++++-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6432 12346899999999999999998653
No 119
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.89 E-value=8.5e-09 Score=83.16 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=89.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------C-CCceEEEcCCCCC--CCCC-CEEEeccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------Y-AGVEHVGGNMFDS--VPEG-DAILMKWILH 263 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~D~~~~--~p~~-D~i~~~~~lh 263 (357)
..+|||+|||+|.++..|++..-....+++|. +..++.|+. . +.|+|...|+.+| .+.. |+|+=..++.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999998765555777776 666655543 1 3499999999984 2233 7775444433
Q ss_pred cC------ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 264 CW------DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 264 ~~------~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
.+ +.......+..+.+.|+|||+++|..- -+|.+|+.+.++.-|
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFN 197 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCC
Confidence 22 223335678889999999999999331 147889999999999
Q ss_pred CceeEEeecC
Q 018366 338 FKHINFASCV 347 (357)
Q Consensus 338 f~~~~~~~~~ 347 (357)
|.....+|.+
T Consensus 198 f~~~~tvp~p 207 (227)
T KOG1271|consen 198 FEYLSTVPTP 207 (227)
T ss_pred eEEEEeeccc
Confidence 9998888775
No 120
>PRK00811 spermidine synthase; Provisional
Probab=98.89 E-value=7.8e-09 Score=92.95 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=73.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCC--CCC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDS--VPE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~--~p~-~-D~i 256 (357)
+++.+||+||||+|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|.... .+. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3567999999999999999998655557888888 888887764 35799999998762 222 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 018366 257 LMKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 257 ~~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++-..-+..+... ..++++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854433322222 368899999999999998874
No 121
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.89 E-value=1.6e-08 Score=87.31 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=72.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC--C-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE--G- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~--~- 253 (357)
.++..+. ..+..+|||+|||+|..+..+++... +++++|. +++++.+++. .+++++.+|..+..+. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4455555 56778999999999999987777653 6788887 7777766542 4689999998774432 2
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++...++++ .+.+.+.|+|||++++.-
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 999998776654 345678999999998854
No 122
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.86 E-value=7.9e-09 Score=92.53 Aligned_cols=143 Identities=18% Similarity=0.247 Sum_probs=92.8
Q ss_pred HHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceE
Q 018366 170 YHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEH 241 (357)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~ 241 (357)
|..+-+..++..++.+.+ +. .+..+|||+|||+|.++...++.... +++++|+ |..++.++++ .++.+
T Consensus 140 FGTG~H~TT~lcl~~l~~-~~--~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEK-YV--KPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp S-SSHCHHHHHHHHHHHH-HS--STTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred ccCCCCHHHHHHHHHHHH-hc--cCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 333334444444444433 32 34579999999999999988887543 7888888 7777776652 34433
Q ss_pred EEcCCCCCCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC
Q 018366 242 VGGNMFDSVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG 319 (357)
Q Consensus 242 ~~~D~~~~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (357)
.. ..+.+.. |+|+.+-.- +-...+...+.+.|+|||++++.-....
T Consensus 216 --~~-~~~~~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~------------------------ 263 (295)
T PF06325_consen 216 --SL-SEDLVEGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGILEE------------------------ 263 (295)
T ss_dssp --SC-TSCTCCS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG------------------------
T ss_pred --EE-ecccccccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccHH------------------------
Confidence 21 1233323 998864432 4456888899999999999999554321
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEeecCCceeEEE
Q 018366 320 GGRERTKKEFTELAIAAGFKHINFASCVCNLYIME 354 (357)
Q Consensus 320 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie 354 (357)
..+++.+.+++ ||+.++.....+..+++-
T Consensus 264 -----~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~ 292 (295)
T PF06325_consen 264 -----QEDEVIEAYKQ-GFELVEEREEGEWVALVF 292 (295)
T ss_dssp -----GHHHHHHHHHT-TEEEEEEEEETTEEEEEE
T ss_pred -----HHHHHHHHHHC-CCEEEEEEEECCEEEEEE
Confidence 24567778876 999998888766666554
No 123
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=9.3e-08 Score=85.61 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=90.0
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEEecccc--c---
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAILMKWIL--H--- 263 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~~~~~l--h--- 263 (357)
+|||+|||+|..+..++...|+..+++.|+ |..++.|+++ .++.++.+|.+++.+.. |+|+++=-- .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 8888777652 34566667888866555 888764210 0
Q ss_pred cC--------------C----hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 264 CW--------------D----DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 264 ~~--------------~----~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
+. . -+-...++..+.+.|+|||.+++ +... -.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-----------------------------~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-----------------------------TQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-----------------------------Cc
Confidence 00 0 12346788888899999777776 3211 02
Q ss_pred HHHHHHHHHHcC-CceeEEeecC-CceeEEE
Q 018366 326 KKEFTELAIAAG-FKHINFASCV-CNLYIME 354 (357)
Q Consensus 326 ~~e~~~ll~~aG-f~~~~~~~~~-~~~~vie 354 (357)
.+.+.++|.+.| |..+...... +...++.
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~ 273 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFGRDRVVL 273 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCceEEEE
Confidence 567889999999 6666665554 3344443
No 124
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=3.2e-08 Score=84.80 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=85.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHh-hCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC-CC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS-VP 251 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-~p 251 (357)
+..|+..+. .++..+|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|+++ ++|.+..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 445666666 88899999999999999999996 567788999998 7777777652 4599999999883 33
Q ss_pred CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 252 EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 252 ~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
+. |.|++ +. ++..++|.++.++|+|||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dm--p~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DL--PDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cC--CChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 34 99887 55 4556999999999999999999777654
No 125
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.85 E-value=7.8e-08 Score=84.71 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=80.8
Q ss_pred CCceEEEEcCCcc----hHHHHHHhhCC-----CCeEEEeec-hHHHHhCCCC---------------------------
Q 018366 194 NVERLVDVGGGFG----VTLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY--------------------------- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 236 (357)
+.-+|.-.||+|| .+++.+.+..| +.++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999999 45666677775 467788888 7788877640
Q ss_pred --------CCceEEEcCCCCC--CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 237 --------AGVEHVGGNMFDS--VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 237 --------~~v~~~~~D~~~~--~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
..|.|..+|.+++ .+.. |+|+|.|||-+++.+.-.+++++.+..|+|||+|++-..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 2388999999984 3444 999999999999999899999999999999999999543
No 126
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.85 E-value=2.1e-08 Score=87.41 Aligned_cols=152 Identities=21% Similarity=0.336 Sum_probs=88.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCc--chHHHHHH-hhCCCCeEEEeec-hHHHHhCCC----CCC--ceEEEcCCCCC---
Q 018366 183 ERILEHYEGFQNVERLVDVGGGF--GVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPS----YAG--VEHVGGNMFDS--- 249 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~--G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~----~~~--v~~~~~D~~~~--- 249 (357)
...++.+..-.+...+||||||- -..+.+++ +..|+.+++-+|. |-++..++. .++ ..++.+|+.++
T Consensus 57 ~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 57 RRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAI 136 (267)
T ss_dssp HHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHH
T ss_pred HHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHH
Confidence 44555554223778999999993 33455554 4579999999998 777777765 244 88999999872
Q ss_pred C--CC--C-------CEEEeccccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh
Q 018366 250 V--PE--G-------DAILMKWILHCWDD-DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR 317 (357)
Q Consensus 250 ~--p~--~-------D~i~~~~~lh~~~~-~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (357)
+ |. + =.+++..+||+.+| ++...+++.++++|.||++|+|...+.+..+ .............
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p-----~~~~~~~~~~~~~- 210 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP-----ERAEALEAVYAQA- 210 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH-----HHHHHHHHHHHHC-
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH-----HHHHHHHHHHHcC-
Confidence 1 11 1 36889999999987 7889999999999999999999998764321 1111122222222
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeE
Q 018366 318 DGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 318 ~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
......||.+|+.++|. ||+.++
T Consensus 211 ~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 211 GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp CS----B-HHHHHHCCT--TSEE-T
T ss_pred CCCceecCHHHHHHHcC--CCccCC
Confidence 23567899999999998 888764
No 127
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.83 E-value=1.3e-08 Score=85.94 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=68.1
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEE-------cCCCCCC--CCC-CEEEecccccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG-------GNMFDSV--PEG-DAILMKWILHC 264 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~D~~~~~--p~~-D~i~~~~~lh~ 264 (357)
..++|+|||+|..++.+++.+.+ +++.|. +.|++.+++.+++.+.. .++.+-. +.. |+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 48999999999888888888654 666776 89999998875544322 2222211 223 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCC-EEEEEeec
Q 018366 265 WDDDHCLRILKNCYKAIPDNG-KVIVMNSI 293 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG-~l~i~e~~ 293 (357)
++ ..++.+.++++|||.| .+++....
T Consensus 113 Fd---le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 113 FD---LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hc---hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 84 4689999999998765 66665543
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.81 E-value=2.8e-08 Score=90.53 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=73.4
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------------CCCceEEEcCCCCCC---CCC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFDSV---PEG-D 254 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~~~---p~~-D 254 (357)
.++.+||+||||+|..+..+++..+..+++.+|+ +++++.|++ .+|++++.+|..+.+ ++. |
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 3567999999999999999998655568888888 888887773 368999999988722 223 9
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 255 AILMKWILH---CWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 255 ~i~~~~~lh---~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
+|++-..-. ....-...++++.+++.|+|||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999863210 011122357999999999999998885
No 129
>PLN02366 spermidine synthase
Probab=98.80 E-value=3.4e-08 Score=89.38 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~-~-D~i 256 (357)
+++.+||+||||.|..++.+++..+-.+++.+|+ +.+++.+++ .+|++++.+|... ..+. . |+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4578999999999999999987633356788887 777777655 2589999999764 3333 3 999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCCEEEEE
Q 018366 257 LMKWILHCWDDD--HCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 257 ~~~~~lh~~~~~--~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++-..-++.+.. -..++++.+++.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 985433322211 1357899999999999998763
No 130
>PRK03612 spermidine synthase; Provisional
Probab=98.77 E-value=7e-08 Score=94.11 Aligned_cols=98 Identities=19% Similarity=0.289 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCC-------------CCCceEEEcCCCC---CCCCC-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFD---SVPEG- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~---~~p~~- 253 (357)
+++.+|||||||+|..+.++++. |. .+++.+|+ +++++.+++ .+|++++.+|..+ ..++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 35679999999999999999974 55 68888888 889888776 1589999999877 22334
Q ss_pred CEEEeccccccCChh---HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 DAILMKWILHCWDDD---HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 D~i~~~~~lh~~~~~---~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++...-+..+.. -..++++++++.|||||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999986433221111 12468999999999999988853
No 131
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=4.1e-08 Score=82.90 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=93.9
Q ss_pred HHHhhcc-cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------C-------------
Q 018366 184 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------A------------- 237 (357)
Q Consensus 184 ~i~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~------------- 237 (357)
..++.++ .+-.+..+|||||.+|.++..+++.+....++++|+ +..|..|++. .
T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~ 126 (288)
T KOG2899|consen 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGP 126 (288)
T ss_pred hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccc
Confidence 3444443 244678999999999999999999998888999999 7778877652 0
Q ss_pred -----------------Cce-------EEEcCCCC-CCCCCCEEEec----cccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 238 -----------------GVE-------HVGGNMFD-SVPEGDAILMK----WILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 238 -----------------~v~-------~~~~D~~~-~~p~~D~i~~~----~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
++. +...|+.+ ..|..|+|+|- ++--+|.|+-...+++++++.|.|||+|+
T Consensus 127 is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 127 ISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred ccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 111 11122332 12233888663 33335889999999999999999999998
Q ss_pred EEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc--CCceeE
Q 018366 289 VMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA--GFKHIN 342 (357)
Q Consensus 289 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a--Gf~~~~ 342 (357)
+ |+ .+-. ....-........+ ..-.-...++.+..++.+. ||+.+.
T Consensus 207 v-EP----QpWk-sY~kaar~~e~~~~--ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 207 V-EP----QPWK-SYKKAARRSEKLAA--NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred E-cC----CchH-HHHHHHHHHHHhhc--CccceecCHHHHHhhhhhhhhheeeec
Confidence 8 32 1100 00000001100011 1122345789999999887 666544
No 132
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=9.6e-08 Score=80.12 Aligned_cols=99 Identities=17% Similarity=0.318 Sum_probs=77.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCCCCC-C-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDSVPE-G- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~p~-~- 253 (357)
..++..+. +++..+|||||||+|..+.-+++... +++.+++ ++..+.|++ ..+|.++.+|-...+|. +
T Consensus 62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 45667676 78889999999999999999888865 6677776 777777765 25699999999886664 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|.|+.....-..|+ .+.+.|||||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99999887766643 44568999999999554
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.74 E-value=4.7e-08 Score=87.45 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=73.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~ 257 (357)
+++.+||+||||+|..+..+++..+..+++.+|+ +.+++.+++ .++++++.+|..+- .+.. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999998765667888887 777776654 25788888887651 2233 9999
Q ss_pred eccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 018366 258 MKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 258 ~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~ 290 (357)
+...-+.-+... ..++++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865533222222 468899999999999999985
No 134
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.73 E-value=5.8e-08 Score=88.34 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=72.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCC------CCCceEEEcCCCCCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDSVPE--G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~p~--~ 253 (357)
.+++.++ .++..+|||||||+|.++..+++..+. ..++++|. +++++.+++ ..++.++.+|..+..+. .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4555555 556789999999999999999998764 46888888 777776654 24688999998763332 2
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 999987665443 234567899999988853
No 135
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.69 E-value=3.3e-08 Score=83.74 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=68.1
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC----CCCC-C-CEEEeccccc
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD----SVPE-G-DAILMKWILH 263 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~----~~p~-~-D~i~~~~~lh 263 (357)
.+||||||.|.++..++..+|+..++++|+ ...+..+.. ..++.++.+|+.. -++. . |-|++..-=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 899999999999999999999999999998 555544432 3789999999877 1333 3 6666533221
Q ss_pred cCChhH------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 264 CWDDDH------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 264 ~~~~~~------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+....+ ...+|+.+.+.|+|||.|.+.+-
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 111111 25899999999999999988663
No 136
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.66 E-value=2.1e-08 Score=64.41 Aligned_cols=49 Identities=55% Similarity=0.791 Sum_probs=40.7
Q ss_pred HHHHHHHHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHh
Q 018366 36 MATQAAIQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLV 84 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~ 84 (357)
++|++|+++||||.|.+.| +.|++||+.++...+|..+..++|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999875 999999999999225556778999999985
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.66 E-value=1.8e-07 Score=81.79 Aligned_cols=97 Identities=11% Similarity=0.212 Sum_probs=73.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC--------CCC-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV--------PEG- 253 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~--------p~~- 253 (357)
..++.+|||||||+|..+..++...+ +.+++.+|. ++.++.+++. ++++++.+|..+.+ ...
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44678999999999999999988765 678999998 7777776652 57999999987621 123
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|++- ...+....++..+.+.|+|||.+++-+..
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 999873 23355668899999999999987774443
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.65 E-value=1e-07 Score=79.14 Aligned_cols=102 Identities=10% Similarity=0.219 Sum_probs=70.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~--D 254 (357)
+.+++.++ ..+..+|||||||+|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 45666666 566779999999999999999988 457888887 667776654 2579999999988 55543 8
Q ss_pred EEEeccccccCChhHHHHHHHHHHHh--CCCCCEEEEEee
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKA--IPDNGKVIVMNS 292 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~--LkpgG~l~i~e~ 292 (357)
.|+++-- ++.+. .++.++.+. +.++|.+++-..
T Consensus 80 ~vi~n~P-y~~~~----~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNLP-YNIST----PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EEEECCC-cccHH----HHHHHHHhcCCCcceEEEEEEHH
Confidence 7776544 44433 334444433 346677766443
No 139
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.64 E-value=4.2e-08 Score=83.77 Aligned_cols=100 Identities=19% Similarity=0.327 Sum_probs=72.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~ 253 (357)
..+++.+. +++..+|||||||+|..+.-++.... ..+++.+|. +...+.+++. .+|.++.+|.....+. +
T Consensus 62 a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 62 ARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred HHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence 45777777 77889999999999999999988753 335778887 7777777652 5799999998775554 2
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|.|++.......|. .+.+.|++||+|++--
T Consensus 141 pfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEE
T ss_pred CcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEE
Confidence 99999887765432 3556789999999843
No 140
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=2.6e-07 Score=88.11 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=78.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC---CC-CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS---VP-EG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~p-~~ 253 (357)
.++..++ ..+..+|||+|||+|..+..+++..++.+++++|. +.+++.+++. .++.++.+|..+. .+ ..
T Consensus 235 ~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 3444454 55678999999999999999999988788999998 7777776542 2468899998762 22 23
Q ss_pred -CEEEe----cc--ccc-------cCChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 -DAILM----KW--ILH-------CWDDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 -D~i~~----~~--~lh-------~~~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|.|++ +. ++. ....++ ..++|+++.+.|||||++++.+...
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99984 22 111 112222 2478999999999999999877543
No 141
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.62 E-value=4.8e-07 Score=72.20 Aligned_cols=112 Identities=18% Similarity=0.279 Sum_probs=88.8
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCC-C-----CC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFD-S-----VP 251 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~-----~p 251 (357)
.++.+++.++ +..+.-|||+|.|||.++.+++++. ++...+.++. ++......+ .+.++++.||.++ . .+
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 3456677677 7778899999999999999999875 3444555554 666665544 5888999999887 2 22
Q ss_pred CC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 252 EG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 252 ~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.. |.|++.--+-.+|.....++|+++...|++||.++-....
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22 9999999999999888999999999999999999987765
No 142
>PLN02672 methionine S-methyltransferase
Probab=98.61 E-value=4.9e-07 Score=93.47 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=86.0
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------------------CCceEEEcCCCCCCC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------AGVEHVGGNMFDSVP 251 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~D~~~~~p 251 (357)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++ .|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999999889999999 7777766321 369999999988543
Q ss_pred C---C-CEEEeccc--c--------------------ccC----------Chh----HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 252 E---G-DAILMKWI--L--------------------HCW----------DDD----HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 252 ~---~-D~i~~~~~--l--------------------h~~----------~~~----~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. . |+|+++=- . |.. .++ -..++++.+.+.|+|||.+++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2 2 88875321 0 100 011 125677777889999998775 3
Q ss_pred eccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH-HHHHHcCCceeEEeec
Q 018366 292 SIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT-ELAIAAGFKHINFASC 346 (357)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~ 346 (357)
... . ..+.+. ++|++.||+.++++..
T Consensus 278 iG~---------------------------~--q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG---------------------------R--PGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc---------------------------c--HHHHHHHHHHHHCCCCeeEEeee
Confidence 211 1 134566 5888889988887664
No 143
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.57 E-value=2.7e-07 Score=80.53 Aligned_cols=128 Identities=14% Similarity=0.252 Sum_probs=89.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHh-hCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVP- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p- 251 (357)
..|+..++ ..++.+|||.|.|+|.++..|++ ..|.-++.-+|. ++..+.|++ ..+|.+...|+.+ .++
T Consensus 30 ~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 30 SYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 34666666 78889999999999999999996 558889999998 666666654 2579999999965 332
Q ss_pred ---CC-CEEEeccccccCChhHHHHHHHHHHHhC-CCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCH
Q 018366 252 ---EG-DAILMKWILHCWDDDHCLRILKNCYKAI-PDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTK 326 (357)
Q Consensus 252 ---~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~L-kpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 326 (357)
.. |.|++ ++|++ ..++..+.++| ||||++++.-+.++. .
T Consensus 109 ~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v 152 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDP--WEAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------V 152 (247)
T ss_dssp T-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------H
T ss_pred cccCcccEEEE-----eCCCH--HHHHHHHHHHHhcCCceEEEECCCHHH-----------------------------H
Confidence 23 98887 55444 47899999999 899999997765432 1
Q ss_pred HHHHHHHHHcCCceeEEeecC
Q 018366 327 KEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~~ 347 (357)
......|++.||..+++....
T Consensus 153 ~~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 153 QKTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp HHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHCCCeeeEEEEEE
Confidence 122356677899988876653
No 144
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=4.1e-07 Score=87.30 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-CEEEec--
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-DAILMK-- 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D~i~~~-- 259 (357)
..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++. .+|+++.+|+.+..+. . |+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44567999999999999998888654 458899998 7777766542 3588999998773333 3 999851
Q ss_pred --c--cc-------ccCChhHH-------HHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 260 --W--IL-------HCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 260 --~--~l-------h~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
. ++ ++++.++. .++|+++.+.|||||+++..+....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1 11 12333322 3689999999999999999886553
No 145
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.57 E-value=3.4e-07 Score=87.40 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=79.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcCCCC-CC--CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFD-SV--PE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~-~~--p~ 252 (357)
.++..++ ..+..+|||+|||+|..+..+++..++.+++++|+ +++++.+++. . ++.+..+|... +. +.
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3444455 55678999999999999999999888778999998 7777766542 1 23336667654 22 22
Q ss_pred -C-CEEEe------ccccccCCh-------hH-------HHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 253 -G-DAILM------KWILHCWDD-------DH-------CLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 253 -~-D~i~~------~~~lh~~~~-------~~-------~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
. |.|++ ..+++..++ ++ ..++|+++.+.|||||+|+..+....
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 99984 345655433 11 35899999999999999999877654
No 146
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=4.5e-07 Score=87.06 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=77.2
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---CCCC
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS---VPEG 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~p~~ 253 (357)
+...+. ..+..+|||+|||+|..+..+++.. ++.+++++|+ +.+++.+++. .+++++.+|+.+. ++..
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK 320 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence 333444 4566899999999999999999886 6678999998 7777666542 3589999998762 3333
Q ss_pred -CEEEecc------ccccC-------ChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 -DAILMKW------ILHCW-------DDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 -D~i~~~~------~lh~~-------~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|+|++.- ++.+. +..+ ..++|+.+.+.|||||+|+......
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 9998632 12111 1122 2468999999999999999765443
No 147
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.55 E-value=1.7e-07 Score=85.72 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=71.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------------C----CceEEEcCCCCC-----CC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------A----GVEHVGGNMFDS-----VP 251 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~----~v~~~~~D~~~~-----~p 251 (357)
+..+|||+|||.|.=+.......+. .++++|+ +..++.|+++ . ...++.+|.+.. ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~-~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK-HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC-EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5689999999999988888877543 7899998 5666666431 1 245778887651 22
Q ss_pred -C--C-CEEEeccccccC--ChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 252 -E--G-DAILMKWILHCW--DDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 252 -~--~-D~i~~~~~lh~~--~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. . |+|.|...||+. +.+.+..+|+++.+.|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2 3 999999999983 456677899999999999999998654
No 148
>PHA03412 putative methyltransferase; Provisional
Probab=98.52 E-value=6.3e-07 Score=76.96 Aligned_cols=92 Identities=8% Similarity=0.043 Sum_probs=68.5
Q ss_pred CceEEEEcCCcchHHHHHHhhC---CCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC-CEEEeccccccCCh
Q 018366 195 VERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG-DAILMKWILHCWDD 267 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~ 267 (357)
..+|||+|||+|.++..++++. +...++++|+ +.+++.+++. .++.++.+|+.. +.+.. |+|+++=-.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 4699999999999999998874 3567888888 8888888764 678999999987 43333 99998765552221
Q ss_pred ----------hHHHHHHHHHHHhCCCCCE
Q 018366 268 ----------DHCLRILKNCYKAIPDNGK 286 (357)
Q Consensus 268 ----------~~~~~~L~~~~~~LkpgG~ 286 (357)
.-...+++++.++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1234688999986666553
No 149
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.52 E-value=1.4e-06 Score=73.17 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=89.6
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCC-CCCC---C--CEEEeccccccCChh
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-SVPE---G--DAILMKWILHCWDDD 268 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~---~--D~i~~~~~lh~~~~~ 268 (357)
..++|||||=+...... .++-..++-+|+.+. . -.+...||++ |+|. . |+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~------~--~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ------H--PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC------C--CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999975554443 244456788886331 1 2456689998 7773 2 999999999999955
Q ss_pred -HHHHHHHHHHHhCCCCCE-----EEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 269 -HCLRILKNCYKAIPDNGK-----VIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 269 -~~~~~L~~~~~~LkpgG~-----l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
+.-++++++++.|+|+|. |+++-+.. .+ .+.+..+.+.|..+++..||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~---------------------Cv-~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP---------------------CV-TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch---------------------Hh-hcccccCHHHHHHHHHhCCcEEEE
Confidence 455999999999999999 77765321 11 277778999999999999999988
Q ss_pred EeecC
Q 018366 343 FASCV 347 (357)
Q Consensus 343 ~~~~~ 347 (357)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 86653
No 150
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=6.2e-07 Score=85.77 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=78.9
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C----CC
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S----VP 251 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~----~p 251 (357)
+...+. ..+..+|||+|||+|..+..+++... ..+++.+|+ +++++.+++. .+|+++.+|..+ + ..
T Consensus 244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 334444 45668999999999999999998864 458899998 7777766542 458899999876 2 12
Q ss_pred C-C-CEEEec------cccccCCh-------hH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 252 E-G-DAILMK------WILHCWDD-------DH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 252 ~-~-D~i~~~------~~lh~~~~-------~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
. . |.|++- .++++.++ ++ -.++|+++.+.|||||+|+..+...
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2 3 999862 35554433 11 3588999999999999999877544
No 151
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.51 E-value=3.4e-07 Score=76.39 Aligned_cols=94 Identities=15% Similarity=0.318 Sum_probs=69.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCc--eEEEcCCCC--CCCCC--CEEEecccccc--
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGV--EHVGGNMFD--SVPEG--DAILMKWILHC-- 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v--~~~~~D~~~--~~p~~--D~i~~~~~lh~-- 264 (357)
...-|||||||+|..+..+... +...+++|+ |+|++.+.+ ..+ .++-+|+-+ |++.+ |-+++...+.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3678999999999988887765 467899999 999998875 222 467788877 44444 87765544432
Q ss_pred -------CChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 265 -------WDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 265 -------~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.|......++..++..|++|++-++.
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 23444567888999999999998874
No 152
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.49 E-value=3.6e-06 Score=71.78 Aligned_cols=99 Identities=13% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEE-cCCCCCC----CCC-CEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVG-GNMFDSV----PEG-DAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~-~D~~~~~----p~~-D~i 256 (357)
.+++++|||||.+.|.-+..++...| +.+.+.+|+ ++..+.|++. ++|+++. +|..+.+ .+. |+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 888999998 8888888762 5688888 5776621 223 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
++ +....+.+++|..+.+.|+|||.+++-+...+
T Consensus 137 FI-----DadK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FI-----DADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EE-----eCChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 87 33446678999999999999998877554443
No 153
>PLN02476 O-methyltransferase
Probab=98.46 E-value=3.8e-06 Score=74.54 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=74.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCC--------CCC-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSV--------PEG- 253 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~--------p~~- 253 (357)
..++.+|||||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.+|..+.+ +..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45678999999999999999998775 557888887 767776654 258999999987621 123
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|++- -+..+....++.+.+.|+|||.|++-+..
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 988873 34466789999999999999997774443
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.46 E-value=5.6e-07 Score=77.60 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=69.4
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC----CCCC-C-CEEEecccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD----SVPE-G-DAILMKWIL 262 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~----~~p~-~-D~i~~~~~l 262 (357)
..+||||||.|.++..+++.+|+..++++++ ...+..+.+ ..++.++++|... -.++ . |-|++...=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 4899999999999999999999999999998 444443322 2488999999776 2344 3 666553321
Q ss_pred ccCChhH------HHHHHHHHHHhCCCCCEEEEEe
Q 018366 263 HCWDDDH------CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 263 h~~~~~~------~~~~L~~~~~~LkpgG~l~i~e 291 (357)
-+..... ...+|+.+.+.|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 1111011 2489999999999999999965
No 155
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.43 E-value=1.4e-06 Score=77.72 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=73.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCC--CCCEEEec-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVP--EGDAILMK- 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p--~~D~i~~~- 259 (357)
..+..+|||+|||+|..+..+++...+ ..++.+|+ +.+++.+++. .+|+++..|... +.. ..|.|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 456679999999999999999987753 57899998 7777666542 457888888765 222 23988752
Q ss_pred -----cccc-------cCChhHH-------HHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 260 -----WILH-------CWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 260 -----~~lh-------~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.++. .+.+++. .++|+++.+.|||||+|+...-...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 1222 1232222 4699999999999999987765543
No 156
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=2e-06 Score=81.98 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C-C-CCC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S-V-PEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~-~-p~~-D~i~~~ 259 (357)
..+..+|||+|||+|..+..+++.. +..+++.+|+ +.+++.+++. .+++++.+|..+ + . +.. |.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5567899999999999999999876 4568999998 7777776542 357888999865 2 2 223 998852
Q ss_pred ------ccccc-------CChhH-------HHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 260 ------WILHC-------WDDDH-------CLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 260 ------~~lh~-------~~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.++.. ++.++ -.++|.++.+.|||||+++...-...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22222 22211 25789999999999999988776554
No 157
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.39 E-value=1.6e-06 Score=77.14 Aligned_cols=97 Identities=21% Similarity=0.324 Sum_probs=75.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~~-D~i~ 257 (357)
+.+++||-||+|.|..++++++..+--+++.+|+ +.+++.+++ .+|++++..|..+ ..+.. |+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3457999999999999999999988778999998 899998876 2789999999877 23333 9998
Q ss_pred eccccccCCh-h--HHHHHHHHHHHhCCCCCEEEEE
Q 018366 258 MKWILHCWDD-D--HCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 258 ~~~~lh~~~~-~--~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
+-..=. ... + -...+++.++++|+|+|.++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 743221 111 0 1268999999999999999986
No 158
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.39 E-value=8.3e-07 Score=75.47 Aligned_cols=110 Identities=17% Similarity=0.306 Sum_probs=66.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---------------CCCceEEEcCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 246 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D~ 246 (357)
..+++.++ +.+...++|||||.|......+-..+--+++|+++ +...+.+.. ..++++..+||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 35666666 66778999999999999888887765445888887 544433321 14588899999
Q ss_pred CC-C-----CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 247 FD-S-----VPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 247 ~~-~-----~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
.+ + +.++|+|++++.+ |+ ++...-|++....||||.+++......+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred cccHhHhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 87 3 2345999999976 44 45556668888889999998876665544
No 159
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.38 E-value=1.1e-06 Score=77.35 Aligned_cols=98 Identities=15% Similarity=0.234 Sum_probs=73.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeech-HHHHhCCCC--------C----CceEEEcCCCC-------CCCC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSY--------A----GVEHVGGNMFD-------SVPE 252 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~--------~----~v~~~~~D~~~-------~~p~ 252 (357)
++...++|+|||.|.=+...-++.-+ .++++|+. -.+++|+.+ . .+.|+++|-+. +.++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 45678999999999988887776433 68999994 457777652 1 25788887553 1122
Q ss_pred --CCEEEecccccc-C-ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 253 --GDAILMKWILHC-W-DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 253 --~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
-|+|.|..++|+ | +.+.+..+|+++.+.|||||+++-.-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 399999999997 3 45678899999999999999998743
No 160
>PLN02823 spermine synthase
Probab=98.33 E-value=1.9e-06 Score=78.90 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCCC---CCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDSV---PEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~~---p~~-D~i~~ 258 (357)
++.+||.||+|.|..++++++..+..+++.+|+ +.+++.+++ .+|++++.+|.+.-+ +.. |+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 567999999999999999998766667888888 888887764 268999999988722 223 99987
Q ss_pred ccccccCC--hh---HHHHHHH-HHHHhCCCCCEEEEE
Q 018366 259 KWILHCWD--DD---HCLRILK-NCYKAIPDNGKVIVM 290 (357)
Q Consensus 259 ~~~lh~~~--~~---~~~~~L~-~~~~~LkpgG~l~i~ 290 (357)
-. ...+. .. -..++++ .+++.|+|||.+++.
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 52 11110 00 1247787 899999999998764
No 161
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.32 E-value=4.5e-06 Score=75.75 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=92.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEc----CCCCCC--CC-C-CEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGG----NMFDSV--PE-G-DAI 256 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----D~~~~~--p~-~-D~i 256 (357)
...++||||||+|.+...++.+.++++++++|+ +..++.|++. .+|++... +++... +. . |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888888889999999998 7777777641 35666532 333322 23 2 999
Q ss_pred EeccccccCChhH---HHHHHHHH----------------HHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh
Q 018366 257 LMKWILHCWDDDH---CLRILKNC----------------YKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR 317 (357)
Q Consensus 257 ~~~~~lh~~~~~~---~~~~L~~~----------------~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (357)
+|+=-+|.-..+. ...-.+++ .+++.+||.+.++..+..+. ..+..... ++..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~g-wfts- 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQVL-WFTS- 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhCc-EEEE-
Confidence 9998887654332 11222222 23345778777776665442 00111111 1111
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 318 DGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 318 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
.-++.-+.+.+.+.|++.|.+.+.++...
T Consensus 266 -mv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 266 -LVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred -EeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 12445589999999999999877777653
No 162
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.32 E-value=3e-06 Score=76.91 Aligned_cols=105 Identities=12% Similarity=0.184 Sum_probs=76.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC----CCCeEEEeec-hHHHHhCCC------CCCceE--EEcCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-PHVVQDAPS------YAGVEH--VGGNMFD 248 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~v~~--~~~D~~~ 248 (357)
..+|+..++ +...|+|+|||+|.=+..|++.. ...+++.+|+ .+.++.+.+ .+.+++ +++|+.+
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 346666665 45589999999998777666655 3467999998 445544322 355665 7888866
Q ss_pred C---CC-----CC-CEE-EeccccccCChhHHHHHHHHHHH-hCCCCCEEEE
Q 018366 249 S---VP-----EG-DAI-LMKWILHCWDDDHCLRILKNCYK-AIPDNGKVIV 289 (357)
Q Consensus 249 ~---~p-----~~-D~i-~~~~~lh~~~~~~~~~~L~~~~~-~LkpgG~l~i 289 (357)
. ++ .. .++ ++..++.+++++++..+|+++++ .|+|||.|+|
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2 22 12 454 55679999999999999999999 9999999888
No 163
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.30 E-value=2.7e-06 Score=75.45 Aligned_cols=91 Identities=11% Similarity=0.277 Sum_probs=61.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCCC-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEGD- 254 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~D- 254 (357)
...+++.++ ..+..+|||||||+|.++..+++..+. ++++|. +.+++.+++ .++++++.+|+.+ +.+..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 345666665 566789999999999999999999875 555665 667666553 3679999999988 554334
Q ss_pred -EEEeccccccCChhHHHHHHHHHHH
Q 018366 255 -AILMKWILHCWDDDHCLRILKNCYK 279 (357)
Q Consensus 255 -~i~~~~~lh~~~~~~~~~~L~~~~~ 279 (357)
.+++++.=++++. .++.++..
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHhc
Confidence 3334444444433 44555443
No 164
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=2.3e-06 Score=71.86 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=94.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCc--eEEEcCCCC-CCCCC--CEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGV--EHVGGNMFD-SVPEG--DAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v--~~~~~D~~~-~~p~~--D~i~~~~~lh~~ 265 (357)
....++|||||-|.....+....-. +.+..|. -.|++.++.. +.+ ....+|=.. ++.++ |+|+.+..+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve-kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE-KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh-heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 3458999999999999999988632 6788887 6788887753 443 455566444 55554 999999999987
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCcc------CCHHHHHHHHHHcCCc
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRE------RTKKEFTELAIAAGFK 339 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~t~~e~~~ll~~aGf~ 339 (357)
.+.+..+.+++.+|||+|.++-.-.. .+ . ...+-..+.+.-+... ||-. -...++..+|..|||.
T Consensus 151 --NdLPg~m~~ck~~lKPDg~Fiasmlg--gd---T-LyELR~slqLAelER~-GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 --NDLPGSMIQCKLALKPDGLFIASMLG--GD---T-LYELRCSLQLAELERE-GGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred --ccCchHHHHHHHhcCCCccchhHHhc--cc---c-HHHHHHHhhHHHHHhc-cCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 56789999999999999987753321 11 1 1111222222222222 3322 2356788999999999
Q ss_pred eeEE
Q 018366 340 HINF 343 (357)
Q Consensus 340 ~~~~ 343 (357)
...+
T Consensus 222 m~tv 225 (325)
T KOG2940|consen 222 MLTV 225 (325)
T ss_pred ccee
Confidence 7654
No 165
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.29 E-value=3.5e-06 Score=74.56 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=78.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~- 253 (357)
+.++.+..+++ .+.|||+|||+|.++.-.++... -++..++-.+|.+.|+.. +||.++.|-+.+ ++|+.
T Consensus 167 ~Ail~N~sDF~-~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~ 244 (517)
T KOG1500|consen 167 RAILENHSDFQ-DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKV 244 (517)
T ss_pred HHHHhcccccC-CcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhc
Confidence 34555544354 46899999999999888777753 377888878888888752 689999999988 88876
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
|+|+.--.-+.+-++...+-.-.+++.|||.|.++
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 99987655555545666666667789999999876
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.28 E-value=7e-07 Score=76.05 Aligned_cols=97 Identities=15% Similarity=0.289 Sum_probs=73.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCC-------C-CC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSV-------P-EG-D 254 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~-------p-~~-D 254 (357)
.++.+|||||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+.+ + .. |
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3578999999999999999999887 578999988 767776654 258999999986511 1 12 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+|++-. ...+....+..+.+.|+|||.+++-+...
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 998743 44566789999999999999888855443
No 167
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=2.5e-05 Score=63.50 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=86.7
Q ss_pred CceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCCCCC-CC-CEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFDSVP-EG-DAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~p-~~-D~i~~~~~lh~~ 265 (357)
+.-++|||||+|..+..+++.. |+..+...|+ |..++...+ ..++..+..|+.+.+. .. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 5789999999999988888765 7778888898 776665433 1346788888887433 33 888775433221
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCH
Q 018366 266 DDDH-------------------CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTK 326 (357)
Q Consensus 266 ~~~~-------------------~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 326 (357)
+++. ..++|.++-..|.|.|.++++-... -.+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-----------------------------N~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-----------------------------NKP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------cCH
Confidence 1111 2456666667777888777754321 125
Q ss_pred HHHHHHHHHcCCceeEEeec---CCceeEEEEe
Q 018366 327 KEFTELAIAAGFKHINFASC---VCNLYIMEFF 356 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~---~~~~~vie~~ 356 (357)
+++-+.++.-||........ .+..+++.++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 66777888888887655443 2556666654
No 168
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.27 E-value=2.2e-06 Score=71.34 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=65.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------CCCceEEEcCCCCCC-----C-CC-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFDSV-----P-EG-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~-----p-~~-D~i 256 (357)
....+|||+|||+|..+..++...+..+++..|.+++++..+. ..++.+...|-.++. + .. |+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 4567999999999999999998866678888898556554332 245777777654421 2 23 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+.+.++|+- +....+++.+.+.|+|+|.+++.....
T Consensus 124 lasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 124 LASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999864 778899999999999999877766554
No 169
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.27 E-value=1e-05 Score=77.78 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=69.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC-----
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS----- 249 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~----- 249 (357)
...+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++. .+++++.+|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344555554 4456799999999999999999885 47888998 8888877652 4689999998652
Q ss_pred CCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 250 VPE-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 250 ~p~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++. . |+|++.--- ....++++.+.+ ++|++.+++.
T Consensus 363 ~~~~~fD~Vi~dPPr-----~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLDPPR-----AGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhcCCCCEEEECcCC-----cChHHHHHHHHh-cCCCeEEEEE
Confidence 222 2 998873321 123355655555 6888877773
No 170
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.23 E-value=2.1e-06 Score=81.72 Aligned_cols=126 Identities=18% Similarity=0.249 Sum_probs=80.1
Q ss_pred hhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCC---CCceEEEEcCCcchHHHHHHhhC----CCCeEEEeec-h
Q 018366 156 IFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQ---NVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-P 227 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~ 227 (357)
.|+-|++|+-....|.+++.. .+.+.....+ +...|+|||||+|-++...++.. ...+++.++- +
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 577788888777777775421 2333222111 24689999999999987766554 3467888875 4
Q ss_pred HHHHhC----CC---CCCceEEEcCCCC-CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 228 HVVQDA----PS---YAGVEHVGGNMFD-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 228 ~~~~~a----~~---~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
..+... +. .++|+++.+|+.+ ..|.- |+|++-..=.....|-..++|....+.|||||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 333221 11 2689999999999 66654 99988666544444667788999899999998665
No 171
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.22 E-value=3.1e-05 Score=66.98 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=84.4
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHH-hCCCCCCce-EEEcCCCC----CCC-
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ-DAPSYAGVE-HVGGNMFD----SVP- 251 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~-~~~~D~~~----~~p- 251 (357)
.....+++.++...+..+|||+|||+|.++..+++.. -.+++++|. +.++. ..++.+++. +...|+.. +.+
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 3345666665522355689999999999999999873 357899998 43544 456666654 33335542 111
Q ss_pred C---CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE-EEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 252 E---GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI-VMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 252 ~---~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~-i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
+ .|+.+++.. .+|..+.+.|+| |.++ ++-+-.+-.+.... .-....|- .....-.+
T Consensus 140 d~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~--~~giv~~~-------~~~~~~~~ 199 (228)
T TIGR00478 140 DFATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKN--KKGVVRDK-------EAIALALH 199 (228)
T ss_pred CceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcC--cCCeecCH-------HHHHHHHH
Confidence 1 166665443 358889999999 6555 43332221110000 00000000 01112356
Q ss_pred HHHHHHHHcCCceeEEeecC
Q 018366 328 EFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~~ 347 (357)
++..++.+.||++....+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 200 KVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHcCCCeEeeEEECC
Confidence 67778888999998887764
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.21 E-value=7.8e-06 Score=72.67 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=59.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCCCE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEGDA 255 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~D~ 255 (357)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 345666665 5567899999999999999999984 46777777 677766654 3679999999988 5555588
Q ss_pred EEeccccc
Q 018366 256 ILMKWILH 263 (357)
Q Consensus 256 i~~~~~lh 263 (357)
|+++-..+
T Consensus 95 Vv~NlPy~ 102 (258)
T PRK14896 95 VVSNLPYQ 102 (258)
T ss_pred EEEcCCcc
Confidence 88765543
No 173
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.20 E-value=8.6e-06 Score=72.89 Aligned_cols=111 Identities=13% Similarity=0.300 Sum_probs=77.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCCC----CCceE--EEcCCCC---CCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY----AGVEH--VGGNMFD---SVP 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~v~~--~~~D~~~---~~p 251 (357)
.++...++++ .+.+|||+|+|.|..+-+..+.++.. .++.+|. +.+.+.++.. ..... ...++.. +++
T Consensus 23 ~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 4555555644 45699999999999888888888754 4678887 6777655431 11110 0111111 233
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 252 EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 252 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
..|+|+++++|-.++++...++++++.+.+.+ .|+|+|+..+.
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 34999999999999988888999999888776 99999976544
No 174
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.19 E-value=5.9e-06 Score=74.01 Aligned_cols=75 Identities=11% Similarity=0.237 Sum_probs=56.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DA 255 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~ 255 (357)
..+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +.++. |.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 45666565 56678999999999999999999976 6677776 7888877553 589999999987 44442 55
Q ss_pred EEecc
Q 018366 256 ILMKW 260 (357)
Q Consensus 256 i~~~~ 260 (357)
|+.+-
T Consensus 109 vv~Nl 113 (272)
T PRK00274 109 VVANL 113 (272)
T ss_pred EEEeC
Confidence 65543
No 175
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.18 E-value=1.9e-06 Score=80.85 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=68.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEe---ec-hHHHHhCCCCCCceEEEcCC---CCCCCCC--CEEEeccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNF---DL-PHVVQDAPSYAGVEHVGGNM---FDSVPEG--DAILMKWILH 263 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~D~---~~~~p~~--D~i~~~~~lh 263 (357)
.....+||+|||+|.++..+.++. +..+-+ |. +..++.|.++ .|..+.+-+ .-|+|.+ |+|-|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhcccccc
Confidence 345789999999999999999884 333222 22 3344444332 233332322 2278875 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.|...+ ..+|-++.|+|+|||+++...+-..
T Consensus 193 ~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 997665 4789999999999999998766443
No 176
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=4.3e-06 Score=72.87 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=78.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEec
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMK 259 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~ 259 (357)
..+...+ ....++|+|||.|.++.. +|.+..++.|+ ...+..++..+.......|+.. +.+.. |..+..
T Consensus 38 qfl~~~~---~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 38 QFLDSQP---TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred HHHhccC---CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhh
Confidence 4444443 467899999999987663 58889999998 5666666665444667788887 66553 999999
Q ss_pred cccccCChh-HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 260 WILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.++||+... ....+++++.+.++|||..+|.-.
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999998755 455999999999999999777543
No 177
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.17 E-value=4.3e-06 Score=81.24 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhC-CC-----CCCceEEEcCCCC---CCCCC--CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-PS-----YAGVEHVGGNMFD---SVPEG--DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~-----~~~v~~~~~D~~~---~~p~~--D~i~~~~~ 261 (357)
+...+||||||.|.++..++..+|+..++++|. ...+..+ +. ..++.++.+|+.. .++.+ |.|++...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 356899999999999999999999999999998 3322222 11 2577788887642 45544 77766433
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 262 LHCWDDD------HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 262 lh~~~~~------~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
=-+.... -...+|+.+++.|||||.|.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 2211100 12589999999999999999865
No 178
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=1.9e-05 Score=68.35 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCC----CCCCC--CC--CE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNM----FDSVP--EG--DA 255 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~----~~~~p--~~--D~ 255 (357)
+.....|||+|||+|..+..++...|+.+++.+|. +..+..+.+ .+++.++..++ ..+.+ .+ |+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 34456899999999999999999999999999998 666665554 26787775444 33332 33 77
Q ss_pred EEecc--ccccC----------------------ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 256 ILMKW--ILHCW----------------------DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 256 i~~~~--~lh~~----------------------~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++++- +.+.= .-+....++.-+.+.|+|||.+.+-
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 77642 22110 0022345566677899999988773
No 179
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.15 E-value=9.2e-06 Score=68.92 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=64.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCC--CC--CCEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSV--PE--GDAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~--p~--~D~i~~~~~l 262 (357)
...+|||+|||+|.++..++.+.. .+++++|. +..++.+++. .+++++.+|+.+.+ .. .|+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 346999999999999987665553 57888887 6666655542 46889999987632 22 2999986653
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCEEEEEee
Q 018366 263 HCWDDDHCLRILKNCYK--AIPDNGKVIVMNS 292 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~--~LkpgG~l~i~e~ 292 (357)
+. .-..++++.+.. .|+|++.+++-..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 32 223455565555 3789887766443
No 180
>PRK00536 speE spermidine synthase; Provisional
Probab=98.15 E-value=1.2e-05 Score=70.83 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=67.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCCCCCC-CEEEecc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDSVPEG-DAILMKW 260 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~~p~~-D~i~~~~ 260 (357)
+++++||-||||.|..++++++. |. +++.+|+ +.+++.+++ ++|++++.. +.+...+. |+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46789999999999999999987 44 8888887 888888776 278888762 22222233 9999753
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. + + ....+.++++|+|||.++..-
T Consensus 148 ~---~-~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E---P-D---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C---C-C---hHHHHHHHHhcCCCcEEEECC
Confidence 2 1 1 477899999999999998843
No 181
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.12 E-value=6e-06 Score=72.30 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=72.7
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCC---------CC
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVP---------EG 253 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p---------~~ 253 (357)
..++.+||+||+++|.-+..++...| +.+++.+|. ++..+.|++ .++|+++.||..+.++ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34578999999999999999998764 678888887 666666654 2689999999876211 23
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|++-. ........++.+.+.|+|||.|++ |.+
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~-DNv 191 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGY-DNT 191 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEE-cCC
Confidence 9988743 345567889999999999998666 443
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.09 E-value=1.4e-05 Score=72.18 Aligned_cols=89 Identities=15% Similarity=0.327 Sum_probs=62.4
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p~ 252 (357)
+..+++... ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 345666665 56678999999999999999998854 4666666 777776553 3579999999987 5544
Q ss_pred CCEEEeccccccCChhHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRIL 274 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L 274 (357)
.|+|+++ .=++++.+...++|
T Consensus 102 ~d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEec-CCcccCcHHHHHHH
Confidence 4877754 44445545444444
No 183
>PRK04148 hypothetical protein; Provisional
Probab=98.06 E-value=4.2e-05 Score=59.96 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=70.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcch-HHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCC---C-CEEE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPE---G-DAIL 257 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~---~-D~i~ 257 (357)
.+.+.++ ..+..+|+|||||+|. ++..|.+. +..++++|+ +..++.+++ ..+.++.+|++++-++ + |+|+
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 4555555 2345789999999996 77777765 567888888 777776654 3578999999995442 3 9998
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
..+ |+.+...-+.++.+.. |.-++|.....
T Consensus 83 sir-----pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 866 5567777777777754 56677755543
No 184
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.05 E-value=1.1e-05 Score=81.77 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=70.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCC---CCCC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDS---VPEG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~p~~-D~i~~~~ 260 (357)
+..+|||+|||+|.++..++... ..+++.+|+ +.+++.+++. .+++++.+|+++. .+.. |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 45799999999999999999863 336899998 7788877652 3689999998762 2333 9998832
Q ss_pred cc--------ccC-ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 261 IL--------HCW-DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 261 ~l--------h~~-~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
-- ..+ ...+...+++.+.+.|+|||.+++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 10 000 01345678999999999999887743
No 185
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.01 E-value=5.8e-06 Score=72.74 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~-~-D~i 256 (357)
+++.+||-||+|.|..++++++..+-.+++.+|+ |.+++.+++ .+|++++.+|... ..++ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3678999999999999999998765667888888 888887765 2689999999865 3444 4 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 018366 257 LMKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 257 ~~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+.-..=...+... ..++++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8633221111111 3589999999999999999865
No 186
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.98 E-value=1.2e-05 Score=72.22 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=68.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCC-CC-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVP-EG-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p-~~-D~i~~~~~lh 263 (357)
..+.|||+|||+|-++.--+++. -.+++++|-.++++.+++. ..|+++.+.+.+ .+| +- |+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 45799999999999999888887 4588999987777766641 448899998888 677 33 9999887766
Q ss_pred cCChhHHH-HHHHHHHHhCCCCCEEE
Q 018366 264 CWDDDHCL-RILKNCYKAIPDNGKVI 288 (357)
Q Consensus 264 ~~~~~~~~-~~L~~~~~~LkpgG~l~ 288 (357)
+.--+... .+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 64323322 22322236899999775
No 187
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.96 E-value=3e-05 Score=72.90 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=67.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCC------CCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSV------PEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------p~~-D~i~ 257 (357)
+..+|||+|||+|.++...+.. ...+++.+|+ +.+++.+++. .+++++.+|+++.. ... |+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4579999999999998876643 3447899998 7777776642 26889999998722 122 9999
Q ss_pred eccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+.---..-+. .....+++.+.+.|+|||.|+.+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7633211111 123466677889999999999865
No 188
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.94 E-value=0.0001 Score=67.53 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=59.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---CCCC-CEEEeccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS---VPEG-DAILMKWILH 263 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~p~~-D~i~~~~~lh 263 (357)
..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. .+++++.+|+.+. .... |+|++.---.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 479999999999999999985 457899998 8888877642 4689999998762 2123 9988753211
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
... + .++ +....++|++.+++
T Consensus 252 G~~-~---~~~-~~l~~~~~~~ivyv 272 (315)
T PRK03522 252 GIG-K---ELC-DYLSQMAPRFILYS 272 (315)
T ss_pred Ccc-H---HHH-HHHHHcCCCeEEEE
Confidence 111 1 222 22333677665555
No 189
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=7.4e-05 Score=65.37 Aligned_cols=90 Identities=12% Similarity=0.326 Sum_probs=64.2
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC----CCCceEEEcCCCC-CCCC--C-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFD-SVPE--G- 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~~~~~D~~~-~~p~--~- 253 (357)
++.|++..+ ..+..+|+|||+|.|.++..|+++...+.++.+| +.+++..++ .++++++.+|+.. +++. .
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 457777776 5567899999999999999999999887788888 555554443 4789999999999 7775 3
Q ss_pred CEEEeccccccCChhHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRIL 274 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L 274 (357)
+.|+. |.=++.+.+-..++|
T Consensus 97 ~~vVa-NlPY~Isspii~kll 116 (259)
T COG0030 97 YKVVA-NLPYNISSPILFKLL 116 (259)
T ss_pred CEEEE-cCCCcccHHHHHHHH
Confidence 55543 333344433333333
No 190
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.3e-05 Score=64.30 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=65.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC--CCCeEEEeec-hHHHHhCCCC----------------CCceEEEcCCCCCCCC
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY----------------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~D~~~~~p~ 252 (357)
+.+..++||+|+|+|.++..++... +....+++|. |+.++.+++. .++.++.||-..-.++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 4567899999999999988877543 3333377776 8877766541 4678899998874333
Q ss_pred -C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 253 -G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 253 -~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
+ |.|.+-. ...++.+++-+.|+|||+++|
T Consensus 160 ~a~YDaIhvGA--------aa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGA--------AASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEcc--------CccccHHHHHHhhccCCeEEE
Confidence 2 9988753 234567788888999999998
No 191
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=4e-05 Score=62.95 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=50.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCCCEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEGDAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~D~i~~~~~l 262 (357)
...+|+|+|||||.++...+-..|. +++++|+ |+.++.+++. .+|+|++.|+.+.....|.++++=-+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 4568999999999999988877664 6777777 8888887763 57999999987643334766665433
No 192
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.83 E-value=0.00061 Score=60.21 Aligned_cols=136 Identities=14% Similarity=0.235 Sum_probs=87.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-----hH-HHHhCCC--------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PH-VVQDAPS-------------------------------- 235 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~-~~~~a~~-------------------------------- 235 (357)
...+||-=|||-|.++.+++...-.+.+..+.. .. +++...+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 457999999999999999999843333322221 01 1121111
Q ss_pred -------CCCceEEEcCCCC-CCCC---C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc
Q 018366 236 -------YAGVEHVGGNMFD-SVPE---G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS 302 (357)
Q Consensus 236 -------~~~v~~~~~D~~~-~~p~---~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~ 302 (357)
..++....|||.+ ..+. + |+|+....+.- .+++.+.|+.|.+.|||||..+=+-+..-...
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~---- 209 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFE---- 209 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCC----
Confidence 0246778899988 2222 2 99988766653 37889999999999999997665544332210
Q ss_pred hhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 303 SARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+.. ......-+.|.+|+..+.+..||++++...
T Consensus 210 --------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 --------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred --------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 000122467999999999999999987544
No 193
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.82 E-value=6.1e-05 Score=72.22 Aligned_cols=98 Identities=23% Similarity=0.278 Sum_probs=66.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC-----CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS-----VP 251 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-----~p 251 (357)
.+.+.+. ..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++. .+++++.+|+.+. ..
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444444 4556799999999999999999875 36888888 8888877652 5789999998652 11
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 252 -EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 252 -~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.. |+|++.-.=-.. ...+++.+.+ ++|++.+++
T Consensus 360 ~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 22 888863221111 2355665554 789876666
No 194
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.80 E-value=1.1e-05 Score=66.76 Aligned_cols=140 Identities=18% Similarity=0.220 Sum_probs=82.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC-C--CCEEEeccccccCChhHH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP-E--GDAILMKWILHCWDDDHC 270 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p-~--~D~i~~~~~lh~~~~~~~ 270 (357)
.+.++||+|+|.|..+..++..+..+-++.+. ..|+.+.+.. +.++.. ..+... + -|+|.|.++|.-. .+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS-~tMr~rL~kk-~ynVl~--~~ew~~t~~k~dli~clNlLDRc--~~p 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELS-WTMRDRLKKK-NYNVLT--EIEWLQTDVKLDLILCLNLLDRC--FDP 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhh-HHHHHHHhhc-CCceee--ehhhhhcCceeehHHHHHHHHhh--cCh
Confidence 45799999999999999988776554333333 4566655542 112211 111111 1 2999999999876 345
Q ss_pred HHHHHHHHHhCCC-CCEEEEEeec--c---CCCCCCCchhhhhhhhhhhhhhhcCCCccC--CHHHHHHHHHHcCCceeE
Q 018366 271 LRILKNCYKAIPD-NGKVIVMNSI--V---PEIPEVSSSARETSLLDVLLMTRDGGGRER--TKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 271 ~~~L~~~~~~Lkp-gG~l~i~e~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~ 342 (357)
-++|+.++.+|+| .|++++.=.. . +.+....+ .+....+ . .+|+.+ ....+.++|+.|||++..
T Consensus 186 ~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~-~rPdn~L-----e--~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLP-LRPDNLL-----E--NNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCc-CCchHHH-----H--hcCccHHHHHHHHHHHHHhcCchhhh
Confidence 7999999999999 7887763221 1 11111110 0111111 1 134422 123467889999999876
Q ss_pred EeecC
Q 018366 343 FASCV 347 (357)
Q Consensus 343 ~~~~~ 347 (357)
.+..+
T Consensus 258 wTrlP 262 (288)
T KOG3987|consen 258 WTRLP 262 (288)
T ss_pred hhcCC
Confidence 65543
No 195
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=0.00034 Score=57.58 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=86.2
Q ss_pred cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hH-HHH-----------hCCC--CCCceEEEcCCCC-CCCCC-
Q 018366 191 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH-VVQ-----------DAPS--YAGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 191 ~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~-~~~-----------~a~~--~~~v~~~~~D~~~-~~p~~- 253 (357)
++++..+|+|+=.|.|++++-++... .-++.+... |. ... .+++ ..+++.+..+... ..|+.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~v-gp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~ 123 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAV-GPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL 123 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhc-CCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence 47888999999999999999887754 223333322 21 111 1111 1345555555444 33344
Q ss_pred CEEEeccccccC-----ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 254 DAILMKWILHCW-----DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 254 D~i~~~~~lh~~-----~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
|+++....-|++ ......++.+.++++|||||.+++.|.....+...... .--...+..-
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt---------------~~~~ri~~a~ 188 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDT---------------ITLHRIDPAV 188 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhh---------------hhhcccChHH
Confidence 776654333322 24567799999999999999999999876553221100 0112246777
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
..+..+++||+..--..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 888889999998755443
No 196
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.76 E-value=0.00011 Score=62.48 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=83.6
Q ss_pred EEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCC---CCEEEeccccccCC
Q 018366 198 LVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPE---GDAILMKWILHCWD 266 (357)
Q Consensus 198 vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~---~D~i~~~~~lh~~~ 266 (357)
|.||||-+|.+...|++...-.+++..|+ +.-++.|++ .+++++..+|-++.++. .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999998 666666654 26799999998875543 378877664 4
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
..-..++|.+....++...+|++. +. .....+++||.+.||.+++-...
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILq-P~------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQ-PN------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEE-ES------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEe-CC------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 466778888877777655555551 10 13678899999999999865433
Q ss_pred --CCcee-EEEE
Q 018366 347 --VCNLY-IMEF 355 (357)
Q Consensus 347 --~~~~~-vie~ 355 (357)
.+.++ +|.+
T Consensus 126 ~e~~~~YeIi~~ 137 (205)
T PF04816_consen 126 EENGRFYEIIVA 137 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred eECCEEEEEEEE
Confidence 34444 5444
No 197
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.74 E-value=0.00035 Score=59.23 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=87.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCC---CCCCC--CEEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFD---SVPEG--DAIL 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~p~~--D~i~ 257 (357)
.+...+|||...|-|..+.+.+++.. .+++-++- |.+++.+.-+ .+++++.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45678999999999999999998864 24444443 8888887653 358999999877 46654 8875
Q ss_pred ecc-ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 258 MKW-ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 258 ~~~-~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
--- -|..-..=-..++.+++++.|||||+++-..-.... . . .|.. -+....+.|+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~-----r---------------y-rG~d-~~~gVa~RLr~v 268 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK-----R---------------Y-RGLD-LPKGVAERLRRV 268 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc-----c---------------c-ccCC-hhHHHHHHHHhc
Confidence 200 000111123468999999999999998764321111 0 0 1211 245677889999
Q ss_pred CCceeEEeecC
Q 018366 337 GFKHINFASCV 347 (357)
Q Consensus 337 Gf~~~~~~~~~ 347 (357)
||.+++.....
T Consensus 269 GF~~v~~~~~~ 279 (287)
T COG2521 269 GFEVVKKVREA 279 (287)
T ss_pred Cceeeeeehhc
Confidence 99988776543
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.72 E-value=8.2e-05 Score=62.22 Aligned_cols=89 Identities=13% Similarity=0.284 Sum_probs=66.5
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hH---HHHhCCC---CCCceEEEcCCCC-CCCCC-CEEEeccccccCCh
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH---VVQDAPS---YAGVEHVGGNMFD-SVPEG-DAILMKWILHCWDD 267 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~ 267 (357)
+++|||+|.|..+.-++=.+|+.+++.+|. .. .++.+.. ..+++++.+.+.+ ..+.. |+|+++.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence 899999999999999999999999999996 21 2222221 3679999998877 33334 999988764
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
....+++-+...++|||+++..-
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEc
Confidence 34577888888999999998853
No 199
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00028 Score=59.41 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=78.7
Q ss_pred HhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeechHHHHhCCCCCCceEEEcCCCCC-C-
Q 018366 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS-V- 250 (357)
Q Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~- 250 (357)
..+.+.+...++.+.+.-+++..+|+|+|+..|.++..+++.... ..++++|+.++-.. ++|.++.+|+.++ .
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTL 100 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHH
Confidence 344455556677777765778899999999999999988887643 45899997555332 4599999999872 1
Q ss_pred -------CCC--CEEEecc---c-----cccC-ChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 251 -------PEG--DAILMKW---I-----LHCW-DDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 251 -------p~~--D~i~~~~---~-----lh~~-~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.. |+|++-. + .+|. .-.-+..++.-+...|+|||.+++-.+
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 222 7776321 1 1221 112344667777789999999998554
No 200
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.70 E-value=3.6e-05 Score=64.61 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred hhHHHHHhhcccCC--CCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEcCCCC--------
Q 018366 180 IAMERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-------- 248 (357)
Q Consensus 180 ~~~~~i~~~l~~~~--~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-------- 248 (357)
....++.+.++-++ +..+|||+||++|.++..++++. +..+++++|+..+... ..+.++.+|+.+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~----~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL----QNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc----cceeeeecccchhhHHHhhh
Confidence 34556777766333 45899999999999999999998 6778999998444111 234444455432
Q ss_pred -CCC---CC-CEEEeccccccCC---------hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 249 -SVP---EG-DAILMKWILHCWD---------DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 249 -~~p---~~-D~i~~~~~lh~~~---------~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-.+ .. |+|++=.....-. -+-+...|.-+.+.|+|||.+++--.
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 111 23 8887655221111 12233445555567899998887443
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.67 E-value=0.0001 Score=63.78 Aligned_cols=75 Identities=19% Similarity=0.388 Sum_probs=57.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC----C---CCceEEEcCCCC-CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----Y---AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~---~~v~~~~~D~~~-~~p~~ 253 (357)
+..|+..-+ .++...|||||.|||.++..+++....+-++..| |.++....+ . ....++.||++. ++|..
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 346666666 7788999999999999999999997665556666 666655443 2 468999999998 77877
Q ss_pred CEEEe
Q 018366 254 DAILM 258 (357)
Q Consensus 254 D~i~~ 258 (357)
|.++.
T Consensus 125 d~cVs 129 (315)
T KOG0820|consen 125 DGCVS 129 (315)
T ss_pred ceeec
Confidence 77665
No 202
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.67 E-value=6.2e-05 Score=62.22 Aligned_cols=100 Identities=15% Similarity=0.324 Sum_probs=64.9
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------------CCCceEEEcCCCCCCCCC-CEEEec
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFDSVPEG-DAILMK 259 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~~~p~~-D~i~~~ 259 (357)
..-+.|||||-|.++..|+..+|+.-+.+.++ -.+.+..++ ..++.+...+.+.-.|.- .--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999999999987 444333222 145667766665544421 111111
Q ss_pred cccccCChhH-----------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WILHCWDDDH-----------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~lh~~~~~~-----------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
-.++.++|+. ...++.+..-+|++||.++.+.-+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 1222223222 2367788888999999999877543
No 203
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.60 E-value=0.00014 Score=65.35 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=55.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD 248 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~ 248 (357)
.+++++.+. ..+...++|.+||.|..+..+++..| +.+++++|. |++++.+++. .+++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 467788776 55667999999999999999999986 789999999 8888887652 478899888875
No 204
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.59 E-value=0.00025 Score=59.84 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=59.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C--CC-C-CEEEec
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V--PE-G-DAILMK 259 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~--p~-~-D~i~~~ 259 (357)
..+|||++||+|.++.+++.+... +++.+|. +..++.+++. .+++++.+|+++. . .. . |+|++-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 568999999999999999998764 7888887 6666555431 3688999998652 1 11 2 666553
Q ss_pred cccccCChhHHHHHHHHHHH--hCCCCCEEEEEee
Q 018366 260 WILHCWDDDHCLRILKNCYK--AIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~--~LkpgG~l~i~e~ 292 (357)
=-... ....+++..+.+ .|+++|.++ +|.
T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv-~E~ 159 (189)
T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIV-VEE 159 (189)
T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEE-EEe
Confidence 32221 223455555543 577777554 454
No 205
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.59 E-value=0.00089 Score=60.70 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC--CC-CEEEeccccccCChhH
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP--EG-DAILMKWILHCWDDDH 269 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p--~~-D~i~~~~~lh~~~~~~ 269 (357)
.+..++|||||++|.++..++++ +.+++.+|..++.......++|.+...|.+...| .. |+++|-.+. .
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve------~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE------K 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc------C
Confidence 46789999999999999999998 4589999987777767778999999999888443 33 999886653 3
Q ss_pred HHHHHHHHHHhCCCC-CEEEEEeeccCC
Q 018366 270 CLRILKNCYKAIPDN-GKVIVMNSIVPE 296 (357)
Q Consensus 270 ~~~~L~~~~~~Lkpg-G~l~i~e~~~~~ 296 (357)
...+.+-+.++|..| .+-.|+....+.
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLKlpm 309 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLKLPM 309 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEEcCC
Confidence 347777788888777 456666666543
No 206
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0036 Score=53.62 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=94.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec--hHHHHhCCCCCCceEEEc-CCCCC----CCCC-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSYAGVEHVGG-NMFDS----VPEG- 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-D~~~~----~p~~- 253 (357)
....++.++-..+...+||||..||.++.-++++.. .+++++|. .+..-..+..+||..++. |+..- +.+.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 456666666334678999999999999999998753 36777775 445555666778766554 55432 2223
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE-EeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV-MNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|++++--.+ -....+|..+...++|++.++. +-+-.+..+.. ...--....+.....-..++.++
T Consensus 146 d~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~---------v~kkGvv~d~~~~~~v~~~i~~~ 211 (245)
T COG1189 146 DLIVIDVSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ---------VGKKGVVRDPKLHAEVLSKIENF 211 (245)
T ss_pred CeEEEEeeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhh---------cCcCceecCcchHHHHHHHHHHH
Confidence 788775444 4456889999999999986665 33222211100 00000000012233356788899
Q ss_pred HHHcCCceeEEeecC
Q 018366 333 AIAAGFKHINFASCV 347 (357)
Q Consensus 333 l~~aGf~~~~~~~~~ 347 (357)
+.+.||.+..+.+.+
T Consensus 212 ~~~~g~~~~gl~~Sp 226 (245)
T COG1189 212 AKELGFQVKGLIKSP 226 (245)
T ss_pred HhhcCcEEeeeEccC
Confidence 999999998887664
No 207
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.48 E-value=0.0012 Score=55.40 Aligned_cols=100 Identities=16% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-----CCCceEEEc---CCCCCCCCC--CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGG---NMFDSVPEG--DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~---D~~~~~p~~--D~i~~~~~l 262 (357)
.+..+||.||=|-|-....+.++.|..+.+.---|.+.++.+. ..+|....+ |....+|+. |-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 4678999999999999999999989877655444888887765 356766665 555566664 877654433
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.++ ++...+.+.+.++|||+|++-.+.-.-
T Consensus 180 e~y--Edl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 ELY--EDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred hHH--HHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 444 788899999999999999998876543
No 208
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.47 E-value=0.00037 Score=65.41 Aligned_cols=90 Identities=7% Similarity=-0.035 Sum_probs=61.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC---C-CCEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP---E-GDAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p---~-~D~i~~~~~l 262 (357)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.+++. .+++++.+|+.+..+ . .|+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3469999999999999999865 357888887 7777766642 468999999865221 2 3988874321
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
-.. ..++++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 111 134455554 47888777773
No 209
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.45 E-value=0.0024 Score=56.76 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=94.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------CCCceEEEcCCCCCC----------CCC-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFDSV----------PEG- 253 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~----------p~~- 253 (357)
+...|+.+|||-=.....+... ++++++.+|.|++++..++ ..++.++..|+.+.+ |..
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 4567999999987777766322 3688999999988774432 246788999986311 112
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh-hhhcCCCccCCHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL-MTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~l 332 (357)
-++++-.++.+++.++..++|+.+.+...||+.|++ |...+... ............... .....-....+.++..++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDG-EWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEW 237 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccccch-hHHHHHHHHHHHhhhcccccccccCCChhhHHHH
Confidence 588889999999999999999999999888887775 44433111 000000000000000 000000112468999999
Q ss_pred HHHcCCceeEE
Q 018366 333 AIAAGFKHINF 343 (357)
Q Consensus 333 l~~aGf~~~~~ 343 (357)
|.+.||+....
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998765
No 210
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00011 Score=65.77 Aligned_cols=111 Identities=17% Similarity=0.354 Sum_probs=70.2
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCe-EEEeec-hH---HHHhCCCC---CCceEEEcCCCC---CCCCC
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PH---VVQDAPSY---AGVEHVGGNMFD---SVPEG 253 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~---~~~~a~~~---~~v~~~~~D~~~---~~p~~ 253 (357)
+-...+.++ +.+|||+|.|.|.-+-++-..+|++. +++++. |. +.....+. ........|+.. ++|..
T Consensus 105 L~~~~~dfa-pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 105 LQKRVPDFA-PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred HHHhCCCcC-cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc
Confidence 333344454 45799999999999998888899885 455554 22 22221111 222333445443 56666
Q ss_pred CEEEeccccccC----ChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 254 DAILMKWILHCW----DDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 254 D~i~~~~~lh~~----~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
|.|.+..++|-+ ........++++...+.|||.|+|+|...+.
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 766665555543 2333445899999999999999999975443
No 211
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.41 E-value=0.00052 Score=61.94 Aligned_cols=93 Identities=20% Similarity=0.402 Sum_probs=70.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCC-------------CCCceEEEcCCCCCCC---CC-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFDSVP---EG- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~~~p---~~- 253 (357)
++..+||-+|||.|-.++++.+ +|+. +++.+|+ |.|++.++. .+|++++..|.++... +.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4668999999999999999886 5744 5777777 999998873 2789999999988332 12
Q ss_pred CEEEeccccccCChhH--------HHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 DAILMKWILHCWDDDH--------CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~--------~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|+. +++|++ ..++..-+++.|+++|.+++.-
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 77765 344433 2467778889999999999854
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.38 E-value=0.00054 Score=58.42 Aligned_cols=89 Identities=17% Similarity=0.306 Sum_probs=67.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-h---HHHHhCCC---CCCceEEEcCCCC-C-CCC-CCEEEecccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFD-S-VPE-GDAILMKWILHC 264 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~---~~~v~~~~~D~~~-~-~p~-~D~i~~~~~lh~ 264 (357)
..+++|||.|.|..+.-++=.+|+.+++.+|. . ..++.+.. .++++++.+.+.+ . .+. .|+|+++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 58999999999999999998999999999995 2 22333322 3679999888877 2 234 699998775
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.....++.-+...+|+||++++
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchh
Confidence 3345667777788999998765
No 213
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.35 E-value=0.0078 Score=50.95 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=88.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC----C---CCCceEEEcCCCCCCC-C-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----S---YAGVEHVGGNMFDSVP-E-G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~---~~~v~~~~~D~~~~~p-~-~ 253 (357)
.+++.++ ...++.||||-+|.+.+.+.+.++...++..|+ +..++.+. + .+++++..+|-+.++. + .
T Consensus 9 ~va~~V~---~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~ 85 (226)
T COG2384 9 TVANLVK---QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDE 85 (226)
T ss_pred HHHHHHH---cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCC
Confidence 3445444 344599999999999999999999999999997 44444332 2 2678899999887543 3 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+++...+ ...-...+|.+-.+-|+.=-++++ .+ + -...++++|
T Consensus 86 ~d~ivIAGM----GG~lI~~ILee~~~~l~~~~rlIL-----QP-----------------------n---~~~~~LR~~ 130 (226)
T COG2384 86 IDVIVIAGM----GGTLIREILEEGKEKLKGVERLIL-----QP-----------------------N---IHTYELREW 130 (226)
T ss_pred cCEEEEeCC----cHHHHHHHHHHhhhhhcCcceEEE-----CC-----------------------C---CCHHHHHHH
Confidence 88877663 445677888887777764334544 11 1 135778899
Q ss_pred HHHcCCceeEEeecCC
Q 018366 333 AIAAGFKHINFASCVC 348 (357)
Q Consensus 333 l~~aGf~~~~~~~~~~ 348 (357)
|.+.+|.++.-.-..+
T Consensus 131 L~~~~~~I~~E~ileE 146 (226)
T COG2384 131 LSANSYEIKAETILEE 146 (226)
T ss_pred HHhCCceeeeeeeecc
Confidence 9999999876544444
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.32 E-value=0.00033 Score=57.28 Aligned_cols=96 Identities=13% Similarity=0.223 Sum_probs=71.0
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCCCEEEeccccccCCh
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEGDAILMKWILHCWDD 267 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~D~i~~~~~lh~~~~ 267 (357)
..+.|+|.|+|-++.-.++... +++.++. |.....+.+. .+++++.+|..+ ++..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 5789999999998887776644 4444544 7777766653 578999999998 7766699998664333334
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+.-..+++.+.+-||-++.++=.+..
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHh
Confidence 55678899999999999988765443
No 215
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.0066 Score=53.92 Aligned_cols=137 Identities=12% Similarity=0.231 Sum_probs=87.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-----h-HHHHhCCC--------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----P-HVVQDAPS-------------------------------- 235 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~-~~~~~a~~-------------------------------- 235 (357)
...+||-=|||.|.++..|+...+.+.+-.+.. . =+++..+.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 356899999999999999998877665521110 0 01111110
Q ss_pred -------CCCceEEEcCCCC--CCCC--C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc
Q 018366 236 -------YAGVEHVGGNMFD--SVPE--G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS 302 (357)
Q Consensus 236 -------~~~v~~~~~D~~~--~~p~--~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~ 302 (357)
......-.|||.+ ..+. + |+|+..+.+.- ..++.+.|..|.+.|||||..+=+-+..-.-.....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 0123345588887 3333 2 88877765543 378889999999999999999876654322110000
Q ss_pred hhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 303 SARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
. . ....-+.|.+++..+.+.-||++++-..
T Consensus 308 ~------------~-~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 308 V------------E-NEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred C------------c-ccccccccHHHHHHHHHhcCcEEEEeee
Confidence 0 0 0123457899999999999999887653
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.21 E-value=0.0012 Score=58.73 Aligned_cols=96 Identities=14% Similarity=0.273 Sum_probs=62.8
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC----CCCceEEEcCCCC-CCCC----
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFD-SVPE---- 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~~~~~D~~~-~~p~---- 252 (357)
++.+++.++ ..+...|+|||+|.|.++..|++...++.++..| +..++..++ .++++++.+|+.+ +.+.
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d-~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~ 96 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEID-PDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKN 96 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESS-HHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCc-HhHHHHHHHHhhhcccceeeecchhccccHHhhcC
Confidence 457777776 6678899999999999999999998444444444 555554433 5789999999998 5444
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCC
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPD 283 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~Lkp 283 (357)
..+.+..+.=++. ...++.++...-+.
T Consensus 97 ~~~~vv~NlPy~i----s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 97 QPLLVVGNLPYNI----SSPILRKLLELYRF 123 (262)
T ss_dssp SEEEEEEEETGTG----HHHHHHHHHHHGGG
T ss_pred CceEEEEEecccc----hHHHHHHHhhcccc
Confidence 3333333432233 34667776664344
No 217
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.20 E-value=0.0022 Score=61.57 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCC------CCCceEEEcCCCC---CCCCC-CEEE--
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD---SVPEG-DAIL-- 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~p~~-D~i~-- 257 (357)
..+..+|||+++|.|.=+..++....+ ..++..|+ +.-++..++ ..++.+...|... ..+.. |.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999998754 46788887 444443332 2457777777654 23333 8887
Q ss_pred --ecc--cc-------ccCChhHH-------HHHHHHHHHhCCCCCEEEEEeec
Q 018366 258 --MKW--IL-------HCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 258 --~~~--~l-------h~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+. ++ ..|+.+++ .++|.++.+.|||||+|+-.+-+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 442 22 23433333 68999999999999999765543
No 218
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.17 E-value=0.0035 Score=50.54 Aligned_cols=95 Identities=17% Similarity=0.315 Sum_probs=63.1
Q ss_pred EEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC---CC---ceEEEcCCCC---CCCC--C-CEEEeccccc
Q 018366 198 LVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY---AG---VEHVGGNMFD---SVPE--G-DAILMKWILH 263 (357)
Q Consensus 198 vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~~---v~~~~~D~~~---~~p~--~-D~i~~~~~lh 263 (357)
++|+|||+|... .+....+. ..++++|. +.++...+.. .. +.+...|... ++.. . |++ +....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 44444333 36677887 5555543321 11 5677777654 3443 3 888 544444
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
++.+ ....++++.+.++|+|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4432 678999999999999999998876443
No 219
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00018 Score=57.30 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=64.6
Q ss_pred CceEEEEcCC-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---------CCCceEEEcCCCCC--C-CC-C-CEEEe
Q 018366 195 VERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFDS--V-PE-G-DAILM 258 (357)
Q Consensus 195 ~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~--~-p~-~-D~i~~ 258 (357)
..+||++|+| +|..+..++...|+..+-..|- ...++..++ ..++.++..+.... + .. . |+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 3689999999 5566666777778888888885 333333322 13444444443331 1 12 2 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.++.. ++.-..+.+.|...|+|.|+-++..+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence 999854 36778999999999999999766543
No 220
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=97.12 E-value=0.00087 Score=51.44 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 33 VLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 33 ~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
-...+|.--.++.|+..|.+.|+.++.||++.+++ .+..+++.|+.|...|+|....+.....|++.+
T Consensus 8 ~~fkaLadptRl~IL~~L~~~~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~ 75 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRESGELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQGKWVHYRLSP 75 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEcCEEEEEECc
Confidence 34567777889999999986568999999999999 899999999999999999976432233576644
No 221
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.034 Score=46.44 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=88.5
Q ss_pred cccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-----hHHHHhCCCCCCceEEEcCCCCCCC-----CC-CEEE
Q 018366 189 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFDSVP-----EG-DAIL 257 (357)
Q Consensus 189 l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~p-----~~-D~i~ 257 (357)
++ +++..+||-+|..+|+...+++...++-.+..++. .+.+..+++++++--+-+|...|.. +. |+|+
T Consensus 72 ~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 72 FP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEE
Confidence 44 67889999999999999999999988666666665 3456677778888888899877543 22 8877
Q ss_pred eccccccCC-hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 258 MKWILHCWD-DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 258 ~~~~lh~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
. +.. +.++.-+..++..-||+||++++.=-...-+....+. ..+ .++. +-|++.
T Consensus 151 ~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~------------~vf-------~~ev-~kL~~~ 205 (231)
T COG1889 151 Q-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE------------EVF-------KDEV-EKLEEG 205 (231)
T ss_pred E-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH------------HHH-------HHHH-HHHHhc
Confidence 5 222 2455666778888999999777643322211110000 001 2333 445778
Q ss_pred CCceeEEeecC
Q 018366 337 GFKHINFASCV 347 (357)
Q Consensus 337 Gf~~~~~~~~~ 347 (357)
||++.+...+.
T Consensus 206 ~f~i~e~~~Le 216 (231)
T COG1889 206 GFEILEVVDLE 216 (231)
T ss_pred CceeeEEeccC
Confidence 99999887765
No 222
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.11 E-value=0.02 Score=53.43 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=63.8
Q ss_pred CCceEEEEcCCcchHHHHH--------Hhh-------CCCCeEEEeechH-----HHHhCC---C-----------C-CC
Q 018366 194 NVERLVDVGGGFGVTLSMI--------TSK-------YPQIKAVNFDLPH-----VVQDAP---S-----------Y-AG 238 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~-----~~~~a~---~-----------~-~~ 238 (357)
+..+|+|+|||+|.++..+ .++ .|...+..-|+|. ...... + . .+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999665433 222 2456777777651 111110 0 0 11
Q ss_pred ---ceEEEcCCCC-CCCCC--CEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 018366 239 ---VEHVGGNMFD-SVPEG--DAILMKWILHCWDD--D----------------------------------HCLRILKN 276 (357)
Q Consensus 239 ---v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~--~----------------------------------~~~~~L~~ 276 (357)
+.-++|.|.. -+|.+ +++++++.||+.+. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2334567777 67876 99999999998762 1 12233444
Q ss_pred HHHhCCCCCEEEEEeeccCC
Q 018366 277 CYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 277 ~~~~LkpgG~l~i~e~~~~~ 296 (357)
=.+-|.|||++++.-...++
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 44569999999998776643
No 223
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.10 E-value=0.0016 Score=54.45 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=63.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCe---------EEEeec-hHHHHhCCCC-------CCceEEEcCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK---------AVNFDL-PHVVQDAPSY-------AGVEHVGGNM 246 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~~v~~~~~D~ 246 (357)
.++.... +++...|+|-=||+|.++.+.+...++.. +++.|+ +.+++.+++. ..+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 4444333 67778999999999999999888877777 888888 7777766542 3578999999
Q ss_pred CC-CCCC-C-CEEEecccccc-CCh-hH----HHHHHHHHHHhCCC
Q 018366 247 FD-SVPE-G-DAILMKWILHC-WDD-DH----CLRILKNCYKAIPD 283 (357)
Q Consensus 247 ~~-~~p~-~-D~i~~~~~lh~-~~~-~~----~~~~L~~~~~~Lkp 283 (357)
.+ +.+. . |+|++.--.-. .+. .+ ..++++.+.+.|+|
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 88 5343 3 99987543321 111 12 23667888888998
No 224
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=97.08 E-value=0.0016 Score=44.99 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=48.9
Q ss_pred HHHHhChhHHHHhCCC--CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 40 AAIQLGVFEIIAKAGK--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~--~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
...+-.|+..|.+.|+ .|+.+||+++|+ +...+++.|..|...|+|.... ..++.|+++.
T Consensus 5 ~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~-~~~~~W~i~~ 66 (68)
T smart00550 5 DSLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG-GTPPLWKLTD 66 (68)
T ss_pred hHHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCceEeec
Confidence 3456678888888776 999999999999 8889999999999999999742 1246777653
No 225
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.06 E-value=0.002 Score=60.50 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=66.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC--C-CCEEEecccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP--E-GDAILMKWILHC 264 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p--~-~D~i~~~~~lh~ 264 (357)
..+|||++||+|..+..++...+...+++.|+ +..++.+++. .++++..+|+..... . .|+|++- -. .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD-P~-G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID-PF-G 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC-CC-C
Confidence 35899999999999999998876557888998 7777766542 346688888765222 2 3999873 22 1
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
....+|..+.+.++|||.+++.
T Consensus 136 ----s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ----SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CcHHHHHHHHHHhcCCCEEEEE
Confidence 2246788877888999999997
No 226
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.0011 Score=52.56 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=38.8
Q ss_pred CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 249 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 249 ~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+.++ |+|++.+++.|++-++-...++.+++.|||||+|-|.-+
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 44443 999999999999989999999999999999999988654
No 227
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.02 E-value=0.0029 Score=57.18 Aligned_cols=158 Identities=11% Similarity=0.095 Sum_probs=99.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC----CC-----CceEEEcCCCC-CCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YA-----GVEHVGGNMFD-SVPE- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~-----~v~~~~~D~~~-~~p~- 252 (357)
.+.+.+. .+...|+-+|||==.-+..+-.. +++++..+|.|++++.-++ .. ++.+++.|+++ +++.
T Consensus 84 ~~~~~~~--~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~ 160 (297)
T COG3315 84 FVRAALD--AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQA 160 (297)
T ss_pred HHHHHHH--hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHH
Confidence 4444444 23678999999955444443322 2578899999999986544 22 78999999995 4431
Q ss_pred ---------C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc-hhhhhhhhhhhhhhhcCCC
Q 018366 253 ---------G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS-SARETSLLDVLLMTRDGGG 321 (357)
Q Consensus 253 ---------~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 321 (357)
. -++++-.++.+++.+...++|.+|.....||..++.............. ..................-
T Consensus 161 L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 240 (297)
T COG3315 161 LAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVY 240 (297)
T ss_pred HHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccccee
Confidence 1 5889999999999999999999999999998888775531111100000 0000000000000000011
Q ss_pred ccCCHHHHHHHHHHcCCceeEEe
Q 018366 322 RERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
......++..++.+.||..+...
T Consensus 241 ~~~~~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 241 FGDDPAEIETWLAERGWRSTLNR 263 (297)
T ss_pred ccCCHHHHHHHHHhcCEEEEecC
Confidence 22358899999999999987763
No 228
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0008 Score=52.72 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=47.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCC-C--CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPE-G--DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~-~--D~i~~~~~l 262 (357)
.+.+++|+|||.|.+..+..- +.+-.++++|+ |+.++.+..+ -.+++.+.|+.++.+. + |..+++--+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 357899999999999844332 33446899999 8899988764 2467888888775443 2 766655433
No 229
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.99 E-value=0.00087 Score=62.04 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=76.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
+...++|+|||-|.....+... .....+++|. +.-+.++.. +....++.+|+.+ +++++ |.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 4457999999999999987765 3456777776 333333322 1445668889988 67765 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
.|. ++...++++++++++|||++++.+.+...
T Consensus 189 ~~~--~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 189 CHA--PDLEKVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred ccC--CcHHHHHHHHhcccCCCceEEeHHHHHhh
Confidence 998 45579999999999999999998887543
No 230
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.98 E-value=0.0012 Score=44.51 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=46.1
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..+|..-.+..|++.|...+|.|+.+||+.+|+ ++..+++.|+.|...|+|+.+
T Consensus 4 ~~aL~~p~R~~Il~~L~~~~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASNGPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHCSTBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 346666788889999944469999999999999 899999999999999999974
No 231
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.022 Score=51.89 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=70.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEc-CCCC-CCCCC--CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGG-NMFD-SVPEG--DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~-D~~~-~~p~~--D~i~~~~ 260 (357)
...+..|||==||||.++.+..-. ++++++.|+ ..|+.-++.+ ....+... |+.. ++++. |.|++--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456679999999999999997765 678888888 6787777653 23434444 8877 77764 7776421
Q ss_pred -----c-cccCC-hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 261 -----I-LHCWD-DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 -----~-lh~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. ..--. ++-..++|..+.++||+||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11111 24467899999999999999999654
No 232
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=96.95 E-value=0.00058 Score=44.40 Aligned_cols=44 Identities=32% Similarity=0.462 Sum_probs=38.1
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
+.|++.|.+.+ +.|+.|||+++|+ ++.-+.|+|..|+..|++.+
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 45777888765 6799999999999 89999999999999999995
No 233
>PHA00738 putative HTH transcription regulator
Probab=96.95 E-value=0.0017 Score=48.27 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=48.5
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
-.+..|++.|.++++.++.+|++.+++ .+..+++.|+.|...|+|..........|++.+
T Consensus 12 ptRr~IL~lL~~~e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~ 71 (108)
T PHA00738 12 ILRRKILELIAENYILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEGRTLYAKIRE 71 (108)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECC
Confidence 467788999988557999999999999 899999999999999999976433334565443
No 234
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.86 E-value=0.0035 Score=50.23 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=56.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhh----CCCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCCC-CCCC-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFDS-VPEG-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~-~p~~-D~i 256 (357)
.+..+|+|+|||.|.++..++.. .++.+++++|. ++..+.+... .++.+..+++.+. .... +++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 56789999999999999999982 27889999997 5555544331 3455555555442 2223 677
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
+.-+.-=.. ...+|+...+ |+-..++
T Consensus 104 vgLHaCG~L----s~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 104 VGLHACGDL----SDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEeecccch----HHHHHHHHHH---cCCCEEE
Confidence 654444333 3355666555 5554443
No 235
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.86 E-value=0.0022 Score=46.99 Aligned_cols=57 Identities=26% Similarity=0.353 Sum_probs=47.5
Q ss_pred HhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 43 QLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 43 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
-+.|++.|.+. ++.|+.+||+.+++ ++.-+.|.|+.|+..|++... ..++.|++++.
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~--~~~~~y~l~~~ 64 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD--GQNGRYRLGPK 64 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec--CCCCceeecHH
Confidence 35678888775 58999999999999 899999999999999999964 23567887664
No 236
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.013 Score=51.07 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=74.2
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhC----CCC---CCceEEEcCCCC-CCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDA----PSY---AGVEHVGGNMFD-SVP 251 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~---~~v~~~~~D~~~-~~p 251 (357)
+.-|+..++ ..+..+|++-|.|+|.++.++++.. |.-+..-+|. ..-.+.+ +++ +++.+..-|+.. .++
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 456777777 7788999999999999999999876 6667777776 3333333 332 568888888876 333
Q ss_pred C----CCEEEeccccccCChhHHHHHHHHHHHhCCCC-CEEEEEeeccC
Q 018366 252 E----GDAILMKWILHCWDDDHCLRILKNCYKAIPDN-GKVIVMNSIVP 295 (357)
Q Consensus 252 ~----~D~i~~~~~lh~~~~~~~~~~L~~~~~~Lkpg-G~l~i~e~~~~ 295 (357)
. +|.|++ +++. .-..+-.+++.||-+ |+++...++++
T Consensus 173 ~ks~~aDaVFL-----DlPa--Pw~AiPha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPA--PWEAIPHAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred ccccccceEEE-----cCCC--hhhhhhhhHHHhhhcCceEEeccHHHH
Confidence 2 288887 3432 335677777888865 48887766553
No 237
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.84 E-value=0.0019 Score=54.79 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=62.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC--CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG--DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~--D~i~~~~~l 262 (357)
.+...|+|.-||.|.++..+++..+...++..|+ |..++..++ ..++..+.+|..+-.+.. |-|++...-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 3567999999999999999999777778999998 777766544 256889999988743333 888875532
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
....+|..+.+.+++||.+.
T Consensus 180 ------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 ------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEE
T ss_pred ------HHHHHHHHHHHHhcCCcEEE
Confidence 23467888889999998764
No 238
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.0074 Score=49.57 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=64.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEc-CCCCC---------CCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGG-NMFDS---------VPE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-D~~~~---------~p~ 252 (357)
+|-+.+.-+++..+|||+||..|.++.-..++. |+..+.++|+-+... -+++.++.+ |+.++ .|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence 444555546778999999999999999888876 998999999743322 133455555 55442 233
Q ss_pred C--CEEEeccccccCC----------hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 G--DAILMKWILHCWD----------DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~----------~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. |+|+. .+.+.-+ -+-|..+|.-....++|+|.+++--.
T Consensus 135 r~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 135 RPVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred CcccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 2 66653 2233211 12344455555567789998887443
No 239
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.73 E-value=0.0017 Score=41.24 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=39.0
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCccee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
++.|...|.+ ||.++.||++.+++ ++..+++.|+.|...|++.
T Consensus 4 R~~Il~~L~~-~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE-GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT-SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh-CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5678888998 69999999999999 9999999999999999987
No 240
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.64 E-value=0.0014 Score=45.31 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=45.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCccee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYG 101 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~ 101 (357)
-.|..++..|-..|+.|+++||+.+|+ ++..+.+.|+.|+..|++.... .....|.
T Consensus 8 ~~E~~vy~~Ll~~~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~~-~~~~~Y~ 63 (68)
T PF01978_consen 8 ENEAKVYLALLKNGPATAEEIAEELGI----SRSTVYRALKSLEEKGLVEREE-GRPKVYR 63 (68)
T ss_dssp HHHHHHHHHHHHHCHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEEE-ECCEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc-CceEEEE
Confidence 345667777765579999999999999 9999999999999999999864 2234454
No 241
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.63 E-value=0.0061 Score=51.83 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=84.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-h----HHHHhCCCCCCceEEEcCCCCCCC-----CC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-P----HVVQDAPSYAGVEHVGGNMFDSVP-----EG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~p-----~~-D~i~~~ 259 (357)
+++..+||-+|.++|....+++.... +-.+..++. | +.+..++++++|--+-.|...|.. +. |+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 56788999999999999999998764 666777776 3 456677778899888899887422 12 888763
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
-. + + ++..-++.++..-||+||.+++.=-.. ..|... ...-...+-.+-|++.||+
T Consensus 151 Va-Q--p-~Qa~I~~~Na~~fLk~gG~~~i~iKa~--------------siD~t~------~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 VA-Q--P-DQARIAALNARHFLKPGGHLIISIKAR--------------SIDSTA------DPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp -S-S--T-THHHHHHHHHHHHEEEEEEEEEEEEHH--------------HH-SSS------SHHHHHHHHHHHHHCTTCE
T ss_pred CC-C--h-HHHHHHHHHHHhhccCCcEEEEEEecC--------------cccCcC------CHHHHHHHHHHHHHHcCCC
Confidence 32 2 2 566778888889999999998853221 111000 0000112223556778999
Q ss_pred eeEEeecC
Q 018366 340 HINFASCV 347 (357)
Q Consensus 340 ~~~~~~~~ 347 (357)
+.+...+.
T Consensus 207 ~~e~i~Le 214 (229)
T PF01269_consen 207 PLEQITLE 214 (229)
T ss_dssp EEEEEE-T
T ss_pred hheEeccC
Confidence 98887764
No 242
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.55 E-value=0.014 Score=49.26 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=60.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHH---HhhC-CCCeEEEeec--hHHHHhCCCC----CCceEEEcCCCCC---
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMI---TSKY-PQIKAVNFDL--PHVVQDAPSY----AGVEHVGGNMFDS--- 249 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l---~~~~-p~~~~~~~D~--~~~~~~a~~~----~~v~~~~~D~~~~--- 249 (357)
++++-.+. +..|+++|.-.|.-+... ++.. ++.+++++|+ +..-..+.+. +||+++.||-.++
T Consensus 25 qeli~~~k----Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~ 100 (206)
T PF04989_consen 25 QELIWELK----PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIV 100 (206)
T ss_dssp HHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHH
T ss_pred HHHHHHhC----CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHH
Confidence 34555444 679999999888766544 3444 7778899987 2222222222 7999999987652
Q ss_pred --CC----CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 250 --VP----EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 250 --~p----~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.. .. -++++-..=|.+ +++.+.|+.....++||++++|-|...
T Consensus 101 ~~v~~~~~~~~~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 101 DQVRELASPPHPVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp HTSGSS----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred HHHHHhhccCCceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 11 11 345555666666 778899999999999999999977654
No 243
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.53 E-value=0.0025 Score=55.99 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=59.7
Q ss_pred EEEcCCCC--CC------CC-CCEEEeccccccCC--hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh
Q 018366 241 HVGGNMFD--SV------PE-GDAILMKWILHCWD--DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309 (357)
Q Consensus 241 ~~~~D~~~--~~------p~-~D~i~~~~~lh~~~--~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~ 309 (357)
++..|+.+ ++ |. .|+|++..+|.... .++-...++++.++|||||.|+++...-... +.
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence 67788877 22 23 39999999998754 4456799999999999999999987643220 00
Q ss_pred hhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 310 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
..-.. + ..-..+++.+++.|+++||.+.+...
T Consensus 208 vG~~~---F-~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 VGGHK---F-PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ETTEE---E-E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ECCEe---c-ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 0 11234899999999999999888764
No 244
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=96.51 E-value=0.0047 Score=39.26 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=38.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCccee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
.+..|+..|.+.|+.|..+||+.+|+ ....+.+.++-|...|+++
T Consensus 4 ~~~~Il~~l~~~~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLRENPRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHCTTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 45678889999878999999999999 8999999999999999984
No 245
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.51 E-value=0.034 Score=47.44 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=69.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhC-------CCCCCceEEEcCCCCCC----C---CC--CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDA-------PSYAGVEHVGGNMFDSV----P---EG--DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~~~----p---~~--D~ 255 (357)
+++++||||.=||.-+..++...|. -+++.+|+ +...+.+ .-...|+++.++..+.+ + .+ |+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4679999999999999999988875 46788887 4444433 33467999999877622 1 12 88
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
++. .+|.+ +....+.++.+++|+||.|++-....+
T Consensus 153 aFv----DadK~-nY~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 153 AFV----DADKD-NYSNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred EEE----ccchH-HHHHHHHHHHhhcccccEEEEeccccC
Confidence 874 34544 445999999999999998888554443
No 246
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.01 Score=50.91 Aligned_cols=97 Identities=16% Similarity=0.291 Sum_probs=73.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC----CeEEEeech-HHHH-----hCCCCCCce--EEEcCCCC---CCCCC---CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLP-HVVQ-----DAPSYAGVE--HVGGNMFD---SVPEG---DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~~-~~~~-----~a~~~~~v~--~~~~D~~~---~~p~~---D~ 255 (357)
+...++|+|.|+..=++.+...+.. .+++-+|+. .++. ..++++.++ -+++|+.. .+|.. =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4679999999999888888877755 678888983 3332 223356544 46678765 34443 55
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++....|-+++++++..+|.+++.+|+||-++++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 67788999999999999999999999999988873
No 247
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.44 E-value=0.022 Score=58.07 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=72.4
Q ss_pred hHHHHHhhcccC-CCCceEEEEcCCcchHHHHHHhhC----C--------------------------------------
Q 018366 181 AMERILEHYEGF-QNVERLVDVGGGFGVTLSMITSKY----P-------------------------------------- 217 (357)
Q Consensus 181 ~~~~i~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~----p-------------------------------------- 217 (357)
.+..++... +| ++...++|-.||+|.++++.+... |
T Consensus 177 lAaa~l~~a-~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRS-GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHc-CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 445556543 36 456899999999999998876531 1
Q ss_pred CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCC---C-CCEEEeccccc-cCC-hhHHHHHHHHHHHhCC
Q 018366 218 QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVP---E-GDAILMKWILH-CWD-DDHCLRILKNCYKAIP 282 (357)
Q Consensus 218 ~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p---~-~D~i~~~~~lh-~~~-~~~~~~~L~~~~~~Lk 282 (357)
..+++++|+ +.+++.++.. +++++..+|+.+ +.+ . .|+|+++--.- .+. .++...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 235789998 8888877652 458899999987 332 1 29998864321 122 2344555555555544
Q ss_pred ---CCCEEEEEee
Q 018366 283 ---DNGKVIVMNS 292 (357)
Q Consensus 283 ---pgG~l~i~e~ 292 (357)
||++++++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8888877654
No 248
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.38 E-value=0.046 Score=50.45 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHh--------hC--------CCCeEEEeechH-----HHHhCCC-------CCC--ceE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITS--------KY--------PQIKAVNFDLPH-----VVQDAPS-------YAG--VEH 241 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~-----~~~~a~~-------~~~--v~~ 241 (357)
.++..+|+|+||.+|..+..+.. .+ |.+.++.-|+|. ....... .+. +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999987766443 22 334567677742 1111110 122 345
Q ss_pred EEcCCCC-CCCCC--CEEEeccccccCCh-------------------------------------hHHHHHHHHHHHhC
Q 018366 242 VGGNMFD-SVPEG--DAILMKWILHCWDD-------------------------------------DHCLRILKNCYKAI 281 (357)
Q Consensus 242 ~~~D~~~-~~p~~--D~i~~~~~lh~~~~-------------------------------------~~~~~~L~~~~~~L 281 (357)
+++.|.. -+|.+ |++++++.||+.+. ++...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6788888 67876 99999999998751 11123333334568
Q ss_pred CCCCEEEEEeeccCCCCCCCc--hhhhhhhhhhhhhhhcCC-------------CccCCHHHHHHHHHHcC-CceeE
Q 018366 282 PDNGKVIVMNSIVPEIPEVSS--SARETSLLDVLLMTRDGG-------------GRERTKKEFTELAIAAG-FKHIN 342 (357)
Q Consensus 282 kpgG~l~i~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~ 342 (357)
+|||++++.-...++...... ...+...-+.++-....| -..+|.+|+++.+++.| |++.+
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~ 250 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEK 250 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEE
Confidence 999999998887766211110 011111111111111111 13469999999998876 55433
No 249
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.37 E-value=0.0058 Score=41.98 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=40.4
Q ss_pred ChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhc
Q 018366 45 GVFEIIA-KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVS 106 (357)
Q Consensus 45 glfd~L~-~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~ 106 (357)
-++..|. ..++.|..+|++.+++ ++..+.+.++.|+..|+|++.....+ ..|++|+.+
T Consensus 7 ~vL~~l~~~~~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 7 QVLRALAHSDGPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHT--TS-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHccCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 3444555 4459999999999999 99999999999999999986533222 357777753
No 250
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=96.31 E-value=0.0038 Score=44.59 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc----ceecchhchh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER----LYGLTPVSKY 108 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~----~y~~t~~~~~ 108 (357)
++++|+..|...+..+..+|.+.+++ +...+++.|+.|+..|+|.......++ .|++|+.+..
T Consensus 1 vRl~Il~~L~~~~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~ 67 (80)
T PF13601_consen 1 VRLAILALLYANEEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGRE 67 (80)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHH
T ss_pred CHHHHHHHHhhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHH
Confidence 47888888888668999999999999 899999999999999999975332222 3788887764
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.29 E-value=0.0011 Score=50.14 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=39.6
Q ss_pred EEEcCCcchHHHHHHhhCCCC---eEEEeec-h---HHHHhCCC---CCCceEEEcCCCCC---CC-CC-CEEEeccccc
Q 018366 199 VDVGGGFGVTLSMITSKYPQI---KAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFDS---VP-EG-DAILMKWILH 263 (357)
Q Consensus 199 LDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~D~~~~---~p-~~-D~i~~~~~lh 263 (357)
||||+..|..+..+++..+.. +++.+|. + ...+..++ ..+++++.+|..+. ++ .. |++++=. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877654 5788887 4 23333332 25799999998652 33 23 8887633 44
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+ +....-++.+.+.|+|||.+++.|
T Consensus 80 ~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 43 677788999999999999988865
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.28 E-value=0.016 Score=51.44 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=56.5
Q ss_pred CCceEEEEcCCcchH-HHHHHhh-CCCCeEEEeec-hHHHHhCCC--------CCCceEEEcCCCC-CC--CCCCEEEec
Q 018366 194 NVERLVDVGGGFGVT-LSMITSK-YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFD-SV--PEGDAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~-~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~~--p~~D~i~~~ 259 (357)
.+.+|+=||||.==+ +..+++. .++..++++|+ |+..+.+++ ..+++|+.+|..+ .. .+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999997644 4444443 36778888998 777766643 2579999999876 22 233999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
...- .+.++..++|.++.+.|+||..+++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7553 34456789999999999999988884
No 253
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.27 E-value=0.01 Score=54.25 Aligned_cols=101 Identities=13% Similarity=0.197 Sum_probs=63.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhh-------CCCCeEEEeec-hHHHHhCCC--------CCCceEEEcCCCC-C-CC--
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFD-S-VP-- 251 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~-~p-- 251 (357)
..+..+|+|-.||+|.++.++.+. .+...+.++|+ +.++..++. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456678999999999999888874 36778889998 555554432 1224578888876 2 22
Q ss_pred CC-CEEEeccccccC--Ch-----------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 252 EG-DAILMKWILHCW--DD-----------------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 252 ~~-D~i~~~~~lh~~--~~-----------------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.. |+|+++--+-.. .+ ..-..++.++.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 22 888764322111 10 1112588999999999999887654
No 254
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.20 E-value=0.0058 Score=48.86 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=40.4
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD 248 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 248 (357)
.|+|||||.|.++..+++.+|+.+++.+|. |.+.+.+++. +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999989999997 7776655542 346666665443
No 255
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.14 E-value=0.006 Score=56.79 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=41.4
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD 248 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 248 (357)
.+|||++||+|.++..+++... +++++|. +++++.+++. .+++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998864 7888887 7888877652 368888888765
No 256
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.13 E-value=0.0018 Score=52.76 Aligned_cols=61 Identities=15% Similarity=0.366 Sum_probs=41.8
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCC---CC--C-CCEEEec
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDS---VP--E-GDAILMK 259 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~---~p--~-~D~i~~~ 259 (357)
.|+|+-||.|..+.++++.+.. ++.+|+ |..++.++. .++|.++.+|+++. +. . .|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999999765 555555 766666654 25899999998872 22 2 2888764
No 257
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.12 E-value=0.02 Score=56.36 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=42.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC--------CeEEEeec-hHHHHhCCCC----C--CceEEEcCCCCC-------CC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ--------IKAVNFDL-PHVVQDAPSY----A--GVEHVGGNMFDS-------VP 251 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--~v~~~~~D~~~~-------~p 251 (357)
...+|+|.|||+|.++..++...+. ..++++|+ +..+..++.. . .+.+...|+... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 45678887 6666555421 2 345555654431 11
Q ss_pred CC-CEEEec
Q 018366 252 EG-DAILMK 259 (357)
Q Consensus 252 ~~-D~i~~~ 259 (357)
.. |+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 22 888764
No 258
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.07 E-value=0.0076 Score=52.28 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=76.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCCCCCCC--CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFDSVPEG--DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~p~~--D~i~~~~~lh~ 264 (357)
+.+.+|+|||||-=-++.......|+..++++|+ ..+++.... ....++...|.....|.. |+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4578999999999999888888889999999999 666665443 256778888998865543 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
+..+.. ..--++.+.++ .-.++|..++..-++.. . |....-..++++++.+-|+.+.+..
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtrSL~gR~-----------~-------gm~~~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTRSLGGRN-----------K-------GMEQTYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES------------------T-------THHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEeccccccccCc-----------c-------ccccCHHHHHHHhcccCCceeeeee
Confidence 744332 22233333343 13555544433211100 0 1112235667777777787744443
No 259
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.98 E-value=0.011 Score=52.48 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=47.2
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|...++.|+.|||+++|+ ++.-+.|+|+.|+..|++.+. .+++.|++.+...
T Consensus 17 l~IL~~l~~~~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~--~~~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEEREIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQE--GESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEecHHHH
Confidence 345566665558999999999999 899999999999999999964 2468899887643
No 260
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=95.98 E-value=0.027 Score=43.46 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=53.8
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
+..+..++..|...++.|..+||+.+++ ++..+.+.++-|+..|+|.......+ -.+.+|+.+..+..
T Consensus 27 t~~q~~iL~~l~~~~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 27 TEQQWRILRILAEQGSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred CHHHHHHHHHHHHcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3445568888887779999999999999 88899999999999999997543222 25888888776554
No 261
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=95.96 E-value=0.011 Score=39.67 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=40.1
Q ss_pred HHhChhHHHHhCCC--CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 42 IQLGVFEIIAKAGK--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 42 ~~lglfd~L~~~g~--~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.++.++-.|...++ .|+.+||+.+++ ++..+.+.++.|+..|+|.+..
T Consensus 6 ~q~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 6 SQFRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence 34556677777655 899999999999 8999999999999999999864
No 262
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=95.95 E-value=0.012 Score=51.92 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=47.5
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|...+ +.++.|||+++|+ ++.-+.|+|..|+..|++.++ +++++|++++..-
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d--~~~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD--PEDGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEeehHHHH
Confidence 55788888742 3569999999999 899999999999999999974 2357899887643
No 263
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.95 E-value=0.016 Score=44.76 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=39.6
Q ss_pred hChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 44 LGVFEIIA-KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 44 lglfd~L~-~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
..++-+|- .+||.|+++||+.++. +..-+.+-|+-|...|++.++..
T Consensus 30 v~v~~~LL~~~~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 30 VEVYKALLEENGPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHhhcCCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeeee
Confidence 34555555 5679999999999999 89999999999999999998643
No 264
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=95.87 E-value=0.011 Score=42.48 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=37.2
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+.|.++||+.+++ ++..+++++..|...|++.... ..+|.|.++.
T Consensus 25 ~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~-G~~GGy~L~~ 69 (83)
T PF02082_consen 25 PVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR-GRGGGYRLAR 69 (83)
T ss_dssp -BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET-STTSEEEESS
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC-CCCCceeecC
Confidence 6999999999999 9999999999999999999753 3357787654
No 265
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.85 E-value=0.056 Score=44.98 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=63.8
Q ss_pred cccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCCCEEEecccc
Q 018366 189 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEGDAILMKWIL 262 (357)
Q Consensus 189 l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~D~i~~~~~l 262 (357)
.|+.=..++|||+|.|+|..+..-++..- ..++..|+ |-.....+-+ -.+.+...|..-+.+..|+++...++
T Consensus 74 ~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlf 152 (218)
T COG3897 74 HPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLF 152 (218)
T ss_pred CccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeecee
Confidence 34344668999999999998887776642 23444444 4433333321 23666767765522334999999999
Q ss_pred ccCChhHHHHHHHHHHHhCC-CCCEEEEEeeccC
Q 018366 263 HCWDDDHCLRILKNCYKAIP-DNGKVIVMNSIVP 295 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~Lk-pgG~l~i~e~~~~ 295 (357)
+.- ....+++. ..+.|+ .|-.+++-++..+
T Consensus 153 y~~--~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 153 YNH--TEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred cCc--hHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 876 44556677 555554 5566666665443
No 266
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.84 E-value=0.012 Score=55.12 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=40.8
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD 248 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 248 (357)
.+|||++||+|.++..+++... +++++|. +.+++.+++. .+++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999999998764 6788887 7777776642 368888888754
No 267
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=95.81 E-value=0.0087 Score=39.84 Aligned_cols=47 Identities=19% Similarity=0.382 Sum_probs=39.9
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
++.++..|.+.|+.|..+||+.+++ ++..+.++++-|+..|++.+..
T Consensus 5 q~~iL~~l~~~~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYENGGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence 4455666777678999999999999 9999999999999999999764
No 268
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.74 E-value=0.011 Score=43.95 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEee
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFD 225 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D 225 (357)
.+...++|||||+|.+..-|.+. +.++.++|
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD 87 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGID 87 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCccccc
Confidence 45678999999999999888876 56788888
No 269
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=95.70 E-value=0.022 Score=46.75 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
++.|+++||+.+++ ++..+.++|..|...|+|... ++.+|.|.+.
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~-rG~~GGy~La 68 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSV-RGPGGGYLLG 68 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-CCCCCCeecc
Confidence 38999999999999 999999999999999999974 2345678764
No 270
>PRK11569 transcriptional repressor IclR; Provisional
Probab=95.68 E-value=0.018 Score=51.67 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=46.3
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 44 LGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 44 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
+.|++.|.+. ++.|+.|||+.+|+ ++.-+.|+|..|+..|+|..+ .+.+.|++.+..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQV--GELGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEecCHHH
Confidence 3456666653 38999999999999 899999999999999999864 246889987654
No 271
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.67 E-value=0.01 Score=42.08 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=43.6
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
|+..+.. |+.+..+|+..+++ +...+.++|+.|...|++.. +++.|.+|+.+..++.
T Consensus 11 IL~~l~~-~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~----~~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK-GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKK----KDGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T-T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEE----ETTEEEE-HHHHHHHH
T ss_pred HHHHHHc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeC----CCCEEEECccHHHHHH
Confidence 4455554 58999999999999 99999999999999999974 4789999999987764
No 272
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=95.66 E-value=0.019 Score=38.53 Aligned_cols=45 Identities=27% Similarity=0.239 Sum_probs=36.7
Q ss_pred ChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 45 GVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 45 glfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.|.+.|.. .+|.|..|||+++|+ ....++++|..|+..|.+...+
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL----SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 35566666 569999999999999 8999999999999999999743
No 273
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.66 E-value=0.014 Score=40.42 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=36.7
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|.+.|.+.|.+|..+||..+++ ++..++.+|+.|+..|.|.+.
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 5677888779999999999999 999999999999999999975
No 274
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.62 E-value=0.027 Score=44.73 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|+++||+.+++ ++..++++|+.|...|++... ++.+|.|.++.
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~-~G~~Ggy~l~~ 69 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSV-RGPGGGYQLGR 69 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE-eCCCCCEeccC
Confidence 38999999999999 999999999999999999864 23356787643
No 275
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=95.56 E-value=0.021 Score=51.09 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=46.6
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
+.|++.|.+.+ +.|+.|||+.+|+ ++.-+.|+|..|+..|+|.++ ...+.|++.+..
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQD--SQLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEEecHHH
Confidence 44666666543 7999999999999 899999999999999999864 246789887654
No 276
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=95.41 E-value=0.023 Score=50.23 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=46.6
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.+... +|.|+.|||+.+|+ ++.-+.|+|..|+..|+|.+ + ++.|++.+...
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~---~-~~~Y~lG~~~~ 68 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTS---D-GRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe---C-CCEEEecHHHH
Confidence 4567777653 38999999999999 89999999999999999985 2 57899887643
No 277
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.36 E-value=0.013 Score=49.15 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C---CCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V---PEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~---p~~-D~i~~ 258 (357)
...++||+=||+|.++.+.+.+.-. +++.+|. +..+...++. .++.++..|.+.. . ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 3579999999999999998888643 6777787 5555555442 3588888997652 1 223 99987
Q ss_pred ccccccCChhH-HHHHHHHHH--HhCCCCCEEEEEee
Q 018366 259 KWILHCWDDDH-CLRILKNCY--KAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~~~~~~-~~~~L~~~~--~~LkpgG~l~i~e~ 292 (357)
-=-... .. ..+++..+. ..|+++|.+++ |.
T Consensus 121 DPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~-E~ 153 (183)
T PF03602_consen 121 DPPYAK---GLYYEELLELLAENNLLNEDGLIII-EH 153 (183)
T ss_dssp --STTS---CHHHHHHHHHHHHTTSEEEEEEEEE-EE
T ss_pred CCCccc---chHHHHHHHHHHHCCCCCCCEEEEE-Ee
Confidence 543332 23 367788877 67888776666 44
No 278
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.28 E-value=0.03 Score=49.90 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=48.3
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhh
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYF 109 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l 109 (357)
+.|++.|...+ +.|..|||+.+|+ ++.-+.|+|+.|+..|++.++. +++.|++++....+
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~--~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA--SDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec--CCCcEEEcHHHHHH
Confidence 44666665543 6999999999999 8999999999999999999742 36789998765433
No 279
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.21 E-value=0.087 Score=50.29 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=81.9
Q ss_pred hhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCC--CceEEEEcCCcchHHHHHHhhC----CCCeEEEeec-hH
Q 018366 156 IFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQN--VERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL-PH 228 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~~ 228 (357)
.|+-|++|+-....|+++. ...+.+..+..+. ...|+-+|+|-|-+..+..+.- ..++.+.++- |.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 3555677776666666533 3455555553333 5688999999998776655432 3445666665 66
Q ss_pred HHHhCCC------CCCceEEEcCCCC-CCC-C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 229 VVQDAPS------YAGVEHVGGNMFD-SVP-E-GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 229 ~~~~a~~------~~~v~~~~~D~~~-~~p-~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+...+. ..+|+++..|+.+ .-| . .|+++.-..=.+-+.|-.++.|.-+.+.|||+|.-+=
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 5554433 2689999999998 444 2 3888754433333334456899999999999976553
No 280
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.18 E-value=0.045 Score=40.52 Aligned_cols=65 Identities=26% Similarity=0.344 Sum_probs=49.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC---Ccceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG---ERLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~~~~l~ 110 (357)
.++.++..|...++.|..+|++.+++ ++..+.+.++-|+..|+|......+ ...|.+|+.+..+.
T Consensus 11 ~~~~il~~l~~~~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 11 TQFLVLRILYEEGPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 35667788876668999999999999 8889999999999999999652211 12466666655444
No 281
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=95.15 E-value=0.037 Score=47.17 Aligned_cols=61 Identities=31% Similarity=0.487 Sum_probs=48.0
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC-----Ccceecchhchh
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG-----ERLYGLTPVSKY 108 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-----~~~y~~t~~~~~ 108 (357)
--|.-.|.+.||.|+.|||+++|+ ++..+++.|+.|+..|++....... .-.|++|..+..
T Consensus 14 ~~il~lL~~~g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 14 ERILELLKKSGPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHHhccCCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 345667777789999999999999 8999999999999999999753221 124777776654
No 282
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=95.13 E-value=0.037 Score=44.70 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=40.0
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
+.|+++||+..++ ++.+|++++..|...|+|.... ..+|.|++...
T Consensus 25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r-G~~GGy~Lar~ 70 (150)
T COG1959 25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR-GKGGGYRLARP 70 (150)
T ss_pred cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec-CCCCCccCCCC
Confidence 7899999999999 9999999999999999999863 33788886543
No 283
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=95.11 E-value=0.074 Score=36.16 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|..+||+.+|+ .+..+.+.|+.|...|++... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~---~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR---GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec---CCCeEEeCC
Confidence 48999999999999 899999999999999999963 236777653
No 284
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.07 E-value=0.16 Score=46.63 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=77.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC---CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV---PE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~---p~ 252 (357)
.+++... .+.+|+|.=+|-|.++..+++...- +++.+|+ |..++..++. .+++.+.||..+-. +.
T Consensus 181 Rva~~v~---~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~ 256 (341)
T COG2520 181 RVAELVK---EGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGV 256 (341)
T ss_pred HHHhhhc---CCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcccc
Confidence 4444433 4679999999999999999987644 3888888 8777766552 45889999998833 33
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
+|-|++.+.- ...+++..+.+.+++||.+...+...++
T Consensus 257 aDrIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 257 ADRIIMGLPK------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CCEEEeCCCC------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 5999987643 2346788888888999999998876544
No 285
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.07 E-value=0.032 Score=50.03 Aligned_cols=98 Identities=19% Similarity=0.308 Sum_probs=68.0
Q ss_pred CceEEEEcCCcchHHHHHHhhC--------------------CCCeEEEeec---hHHHHhCCC----C-----------
Q 018366 195 VERLVDVGGGFGVTLSMITSKY--------------------PQIKAVNFDL---PHVVQDAPS----Y----------- 236 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~----------- 236 (357)
..+||-||||.|.-..+++..+ +.+.++.+|+ ..++..... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999987666665544 2357888887 455544321 0
Q ss_pred --------CCceEEEcCCCC-CCC--------CC-CEEEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 237 --------AGVEHVGGNMFD-SVP--------EG-DAILMKWILHC---WDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 237 --------~~v~~~~~D~~~-~~p--------~~-D~i~~~~~lh~---~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-+++|...|++. ..+ .. ++|.+-.+++- -+.....++|.++-..++||..|+|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 137899999987 221 12 67765555543 2345667999999999999999999986
No 286
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.04 E-value=0.068 Score=50.07 Aligned_cols=99 Identities=10% Similarity=0.099 Sum_probs=71.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCC----CC--C-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSV----PE--G-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~----p~--~-D~i~ 257 (357)
..++|||+=|=||.++...+...- .+++.+|. ...++.++++ .++.++.+|+++.+ .. . |+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 478999999999999998887643 27888998 6677777652 45789999998732 22 2 9997
Q ss_pred ecc-cc-----ccCC-hhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 258 MKW-IL-----HCWD-DDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 258 ~~~-~l-----h~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+-= .+ .-|+ ..+-..++..+.+.|+|||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 511 00 0011 234568899999999999999997753
No 287
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.04 E-value=0.052 Score=48.06 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=66.7
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCCC--C
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPEG--D 254 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~~--D 254 (357)
..++.+++-||+|.|.+.+...+. +.+ .+..+|+ ..+++..++ .++|.++.||-+. ..+.+ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 357789999999999999998887 554 3566666 455554443 2689999998665 34343 8
Q ss_pred EEEeccccccCChh--HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 255 AILMKWILHCWDDD--HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 255 ~i~~~~~lh~~~~~--~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+|+.-..=---+.. -...+..-+.++|||||++++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 88753211111111 123566778899999999998764
No 288
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.01 E-value=0.055 Score=50.60 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=66.7
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCCC------CCceEEEcCCCCCC---CC-CCEEEeccccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSV---PE-GDAILMKWILH 263 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~---p~-~D~i~~~~~lh 263 (357)
.+|||+-||+|..+..++.+.++. .++..|+ |..++.+++. .++++..+|....+ .. .|+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 589999999999999999986543 6788888 7777666542 34778888877622 12 39888733 2
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.. ...++..+.+.+++||.|++.-
T Consensus 124 Gs----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 GT----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CC----cHHHHHHHHHhcccCCEEEEEe
Confidence 22 2368889999999999999973
No 289
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=95.01 E-value=0.047 Score=43.80 Aligned_cols=65 Identities=23% Similarity=0.176 Sum_probs=48.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcc---eecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERL---YGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~---y~~t~~~~~l~ 110 (357)
.+..++-.|...++.|..+||+.+++ ++..+.+.++-|+..|+|.+....++++ ..+|+.+..+.
T Consensus 41 ~q~~vL~~l~~~~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 41 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 34456777776668999999999999 9999999999999999999864322322 45555555443
No 290
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=94.85 E-value=0.04 Score=37.50 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.9
Q ss_pred HhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 51 AKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 51 ~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+.| |.|+.|||+.+|+. .+..+.+.|++|+..|+|...
T Consensus 20 ~~~G~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 20 EENGYPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp HHHSS---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred HHcCCCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 3345 78999999999992 488999999999999999964
No 291
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=94.84 E-value=0.054 Score=46.22 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=49.0
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc-CCCc----ceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-SGER----LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~----~y~~t~~~~~l~ 110 (357)
+..|+..|...|+.|..+||+.+++ ++..+++.|+.|+..|+|..... .+.| .|.+|+.+....
T Consensus 3 r~~IL~~L~~~~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 3 KEDILSYLLKQGQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 3457777876679999999999999 89999999999999999987521 1122 367777765444
No 292
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=94.84 E-value=0.071 Score=35.66 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=40.3
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
|+..|. .++.|..+|++.+++ ++..+.+.|+.|...|++..........|..+.
T Consensus 2 il~~l~-~~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 55 (66)
T smart00418 2 ILKLLA-EGELCVCELAEILGL----SQSTVSHHLKKLREAGLVESRREGKRVYYSLTD 55 (66)
T ss_pred HHHHhh-cCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeeecCCEEEEEEch
Confidence 344555 358999999999999 888999999999999999965322233454443
No 293
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=94.82 E-value=0.054 Score=34.04 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=34.9
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
+.|..+||+.+++ ++..+.+.|+.|...|++... .+.|.+
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~----~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE----GGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----CCEEEE
Confidence 7899999999999 899999999999999999852 356654
No 294
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.79 E-value=0.067 Score=42.14 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|.++||+.+++ ++..++++|+.|+..|+|.... +.++.|.++.
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~-g~~ggy~l~~ 69 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR-GPGGGYRLAR 69 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc-CCCCCccCCC
Confidence 38999999999999 9999999999999999998642 2245676543
No 295
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.77 E-value=0.081 Score=47.83 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=52.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD 248 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~ 248 (357)
.+++++.+. ..+...++|.=+|.|..+..+++..|+.+++++|. |.+++.+++. .|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 457777776 55667999999999999999999988789999998 7787776542 467777777654
No 296
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=94.76 E-value=0.11 Score=43.20 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=40.6
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|+++|...|++|.++||..+|+ +...++++|..|...|++...
T Consensus 26 ~Vl~~L~~~g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 26 EVLKALIKKGEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 38999988779999999999999 899999999999999999953
No 297
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.72 E-value=0.15 Score=42.67 Aligned_cols=84 Identities=17% Similarity=0.297 Sum_probs=61.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC---------CCceEEEcCCCC-C----CC------CC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY---------AGVEHVGGNMFD-S----VP------EG 253 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~~v~~~~~D~~~-~----~p------~~ 253 (357)
+...|+.+|||-=.....+....++++++.+|.|++++..++. .+++++..|+.+ . +. ..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4458999999999999999988889999999999988765541 235789999986 1 11 12
Q ss_pred -CEEEeccccccCChhHHHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNC 277 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~ 277 (357)
-++++-.++.+++.++...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 688889999999999999998876
No 298
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=94.71 E-value=0.061 Score=45.92 Aligned_cols=59 Identities=27% Similarity=0.349 Sum_probs=48.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
.+..++..|.+.|+.+..+||+.+++ ++..+++.|+.|...|++.+... ....|.+|+.
T Consensus 144 ~~~~IL~~l~~~g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~~-r~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAEGEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKGR-KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEcC-CccEEEeCCC
Confidence 34567777777568999999999999 88999999999999999997531 3566777764
No 299
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.28 Score=43.92 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=96.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC--CCCeEEEeechHHHHhCCC----C------------------------CCceE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDLPHVVQDAPS----Y------------------------AGVEH 241 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----~------------------------~~v~~ 241 (357)
.++...|+.+|||.-.....+...+ ++++++.+|.|.++++--. . ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3467899999999999999999888 7889999999776654221 0 23445
Q ss_pred EEcCCCC--CCC---------CC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh
Q 018366 242 VGGNMFD--SVP---------EG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS 308 (357)
Q Consensus 242 ~~~D~~~--~~p---------~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~ 308 (357)
+..|..+ .+. .+ -+++.--+|.++++++...+++-+.+..+ .+.+++.|.+.+.++ +..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~-------Fg~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR-------FGK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-------HHH
Confidence 5555543 110 01 34555567888888999899999988774 578888898875542 112
Q ss_pred hhhhhhhh--hcCC--CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 309 LLDVLLMT--RDGG--GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 309 ~~~~~~~~--~~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
.|--+... +... -...|.+..+.-|.++||+-+.+...
T Consensus 237 vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 22111110 0001 13457888888889999998887654
No 300
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=94.66 E-value=0.071 Score=40.52 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=48.5
Q ss_pred HHHHhChhHHHH----hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcc---eecchhchhhh
Q 018366 40 AAIQLGVFEIIA----KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERL---YGLTPVSKYFV 110 (357)
Q Consensus 40 ~a~~lglfd~L~----~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~---y~~t~~~~~l~ 110 (357)
+..++.++..|. ..|+.|..+||..+++ ++..+.+.++.|+..|+|.+...+.+.+ +.+|+.+..++
T Consensus 24 s~~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 24 SLEELLILYYLGKLENNEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred CHHHHHHHHHHHhhhccCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 344455666666 4358999999999999 9999999999999999999764332222 44555554433
No 301
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.66 E-value=0.043 Score=35.55 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=34.5
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHH
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRL 82 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~ 82 (357)
-.+|.+|++.|-||.=. ..|..|||+.+|+ .+..+...||-
T Consensus 6 ~e~L~~A~~~GYfd~PR---~~tl~elA~~lgi----s~st~~~~LRr 46 (53)
T PF04967_consen 6 REILKAAYELGYFDVPR---RITLEELAEELGI----SKSTVSEHLRR 46 (53)
T ss_pred HHHHHHHHHcCCCCCCC---cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 35899999999999833 5899999999999 77777777764
No 302
>PRK11050 manganese transport regulator MntR; Provisional
Probab=94.65 E-value=0.27 Score=39.81 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=46.7
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
|...+...++.+..+||+.+++ ++..+.++++.|+..|+|... ....+.+|+.+..+.
T Consensus 42 I~~~l~~~~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---~~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAEVGEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---PYRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHhcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---cCCceEECchHHHHH
Confidence 5566666568999999999999 899999999999999999863 234677777766544
No 303
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.59 E-value=0.054 Score=51.60 Aligned_cols=98 Identities=15% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEe---echHHHHhCCCCCCceEEEcCCCC---CCCCC-CEEEecccccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNF---DLPHVVQDAPSYAGVEHVGGNMFD---SVPEG-DAILMKWILHC 264 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~v~~~~~D~~~---~~p~~-D~i~~~~~lh~ 264 (357)
....+.|+|..+|.|.++.+|.+. | +-+..+ +-+..+...-+++=|. +-+|-.+ .+|.. |++...+++..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccch-hccchhhccCCCCcchhheehhhhhhh
Confidence 456689999999999999999764 2 222111 1122222111111111 2234444 34555 99999888887
Q ss_pred CChh-HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 WDDD-HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ~~~~-~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.+. +...+|-++-|.|+|||.++|-|.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6533 466899999999999999999654
No 304
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=94.56 E-value=0.08 Score=36.65 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=43.3
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+..|+..+... +.+..+|++.+++ +...+.+.|+.|...|++..........|++++
T Consensus 9 ~~~il~~l~~~-~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG-PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC-CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 34466666664 5999999999999 888999999999999999975322234566554
No 305
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=94.45 E-value=0.071 Score=43.23 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=45.0
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+++++.+.+-.. ..++.|+++||+..++ ++..|+++|..|...|+|.... ..+|.|.++.
T Consensus 9 YAlr~L~~LA~~----~~~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r-G~~GGy~La~ 68 (153)
T PRK11920 9 YAIRMLMYCAAN----DGKLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR-GRNGGVRLGR 68 (153)
T ss_pred HHHHHHHHHHhC----CCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeeecC
Confidence 345555544322 1237899999999999 9999999999999999999763 3467787643
No 306
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.41 E-value=0.089 Score=47.58 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=48.4
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMF 247 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 247 (357)
...++++.+. ..+...++|.=-|.|..+.++++.+|+.+++++|. |.+++.+++. +|+.++.++|.
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 3567888777 66778999999999999999999999999999999 8888766542 56777777654
No 307
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=94.36 E-value=0.086 Score=42.17 Aligned_cols=55 Identities=25% Similarity=0.275 Sum_probs=45.2
Q ss_pred HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 49 IIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 49 ~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
.+...|+.++.+||+.+++ .+..+.+.++.|...|+|... ..+.|.+|+.+....
T Consensus 16 l~~~~~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~---~~~~i~LT~~G~~~a 70 (142)
T PRK03902 16 LIEEKGYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTPKGKKIG 70 (142)
T ss_pred HHhcCCCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe---cCceEEECHHHHHHH
Confidence 4445568999999999999 899999999999999999853 246799998886443
No 308
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=94.33 E-value=0.085 Score=34.86 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=39.7
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|.+.|.+.+..|+++||+.+++ .+.-++|=|..|...|++.+.
T Consensus 4 ~Il~~l~~~~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEKGKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHcCCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 36777888789999999999999 899999999999999999964
No 309
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=94.33 E-value=0.083 Score=44.85 Aligned_cols=55 Identities=15% Similarity=0.324 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 34 LPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 34 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.-++|...++..|+..|.+.||..+.|||+++|+ ++.-+..-+..|+..|++..+
T Consensus 16 v~kalaS~vRv~Il~lL~~k~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRKGPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence 4467888999999999999889999999999999 888999999999999999864
No 310
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=94.33 E-value=0.098 Score=33.48 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=37.1
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+++.|.+.++.|+.+|++.+++ .+..+.+.|+.|...|++...
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~ 47 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4555555568999999999999 899999999999999999963
No 311
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=94.31 E-value=0.073 Score=40.94 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=45.4
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
-+.+--.+.|+..|...+|.|+.|+|+..|- +...++|-|+.|...|++..+
T Consensus 60 ~vLsp~nleLl~~Ia~~~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 60 RVLSPRNLELLELIAQEEPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HHhChhHHHHHHHHHhcCcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 3444556778889998889999999999999 899999999999999999975
No 312
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=94.16 E-value=0.072 Score=38.92 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=47.2
Q ss_pred hhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 46 VFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
|+..|.. |+....||.+.+ ++ .+..|.+-|+.|+..|++.+....+. -.|++|+.+..+..
T Consensus 10 IL~~l~~-g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ-GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT-SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh-CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 5566676 699999999999 88 88899999999999999997543221 25999998886664
No 313
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=94.06 E-value=0.09 Score=42.00 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=45.0
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
++|++.+.++.+. .+.+.|.++||+.+|+ ++..+++.|..|...|++.... ..+|.|.+.
T Consensus 9 YAl~~~i~la~~~---~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~-G~~GG~~l~ 68 (141)
T PRK11014 9 YGLRALIYMASLP---EGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR-GKNGGIRLG 68 (141)
T ss_pred HHHHHHHHHhcCC---CCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec-CCCCCeeec
Confidence 3555555555432 2237899999999999 9999999999999999999763 235677654
No 314
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.04 E-value=0.3 Score=42.72 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=62.7
Q ss_pred CC-CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC------------CCceEEEc---CCCC---CCCC
Q 018366 192 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY------------AGVEHVGG---NMFD---SVPE 252 (357)
Q Consensus 192 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------~~v~~~~~---D~~~---~~p~ 252 (357)
++ ...+||++|+|+|..+...+. .....++.-|.+......+.. ..+.+... +... -.|.
T Consensus 83 ~~~~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred ccccceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 44 467899999999965555444 456678778876554433221 12333332 2222 1233
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 253 -GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 253 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.|+|+.+.++++- +....+++.++..|..++.+++.....
T Consensus 162 ~~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 162 PFDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 5999999998764 556678888888998888555544433
No 315
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=94.03 E-value=0.21 Score=36.63 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=54.3
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc------cCCHHHHHHH
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR------ERTKKEFTEL 332 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~t~~e~~~l 332 (357)
-++|-|++.++..++|+++.+.-+ |.+++.= .|.. .+...+.. ....++++. ...++++.+.
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~--~~~ifTf--AP~T-------~~L~~m~~-iG~lFP~~dRsp~i~~~~e~~l~~~ 69 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIFTF--APRT-------PLLALMHA-IGKLFPRPDRSPRIYPHREEDLRRA 69 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc--CcEEEEE--CCCC-------HHHHHHHH-HhccCCCCCCCCcEEEeCHHHHHHH
Confidence 356678999999999999988654 7777632 1221 11111111 111133332 2368999999
Q ss_pred HHHcCCceeEEeecCCcee---EEEEeC
Q 018366 333 AIAAGFKHINFASCVCNLY---IMEFFK 357 (357)
Q Consensus 333 l~~aGf~~~~~~~~~~~~~---vie~~~ 357 (357)
++++||++.+......+++ .+|++|
T Consensus 70 l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 70 LAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHhCCCeeeecccccCcChHHHHhhccC
Confidence 9999999998877765544 555553
No 316
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.02 E-value=0.46 Score=44.08 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=71.4
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCe---------------------------------------E
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK---------------------------------------A 221 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~---------------------------------------~ 221 (357)
.+..++. +.+|.+...++|==||+|+++++.+...+|+. +
T Consensus 179 LAaAil~-lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 179 LAAAILL-LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHH-HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 3444554 44587778999999999999999888776422 5
Q ss_pred EEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCC-CC-CEEEecccccc-CChh-HHH----HHHHHHHHhCCCC
Q 018366 222 VNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVP-EG-DAILMKWILHC-WDDD-HCL----RILKNCYKAIPDN 284 (357)
Q Consensus 222 ~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p-~~-D~i~~~~~lh~-~~~~-~~~----~~L~~~~~~Lkpg 284 (357)
++.|+ +.+++.|+.+ +.|+|..+|+.. ..| +. |+|+++----- +.++ .+. .+.+.+++.++--
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 68888 8888887753 458999999887 333 33 99988542110 1122 222 3444455555555
Q ss_pred CEEEEEe
Q 018366 285 GKVIVMN 291 (357)
Q Consensus 285 G~l~i~e 291 (357)
++.+++.
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6666654
No 317
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.00 E-value=0.06 Score=45.59 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=43.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD 248 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~ 248 (357)
....|+|.-||.|..+...+..+|.+-.+.+| |.-+..|+.. +||.|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiD-PikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDID-PVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEecc-HHHHHHHhccceeecCCceeEEEechHHH
Confidence 34689999999999999999999876566666 6666666652 689999999987
No 318
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=93.97 E-value=0.11 Score=44.62 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=48.6
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
+.-.+.+...+|..+||+.+++ ++..+.+.|+.|+..|++.+.....+..+.+|+.+..++.
T Consensus 12 llg~l~~~~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll~ 73 (217)
T PRK14165 12 LLGAVNNTVKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLDVLY 73 (217)
T ss_pred HHhccCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHHH
Confidence 3345555446899999999999 9999999999999999999764334566888887775553
No 319
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=93.83 E-value=0.12 Score=40.70 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
++.|+.+||+++++ ++..+.+.|+.|...|++.... ...+.|.+
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~-g~~ggy~l 67 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR-GVEGGYTL 67 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC-CCCCChhh
Confidence 37999999999999 9999999999999999998632 22455655
No 320
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=93.77 E-value=0.14 Score=44.97 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=58.0
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
++....+..|+=.|.+ ||.|.+||-..+++ .+..+..-++-|...|++.+ +++.|++|..+..++.
T Consensus 9 if~SekRk~lLllL~e-gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~----~~~~Y~LS~~G~iiv~ 74 (260)
T COG4742 9 LFLSEKRKDLLLLLKE-GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQ----EGDRYSLSSLGKIIVE 74 (260)
T ss_pred HHccHHHHHHHHHHHh-CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEe----cCCEEEecchHHHHHH
Confidence 5566778889999998 69999999999999 78888888999999999996 3799999999987765
No 321
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=93.77 E-value=0.16 Score=35.55 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=39.4
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
|=|.|...|..++.+||.+++. ++..++.+|..|+.+|-+.+..
T Consensus 7 lRd~l~~~gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHHcCcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec
Confidence 3467777789999999999999 9999999999999999999763
No 322
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.75 E-value=0.76 Score=42.87 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC--CeEEEeec-hHHHHhCCC----C--CCceEEEcCCCC---CCCC---CCEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFD---SVPE---GDAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~---~~p~---~D~i 256 (357)
..+..+|||..++.|.=+.++++..++ ..++.+|. +.-+...++ . .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567789999999999999999998876 44578887 333332222 1 345677776543 1221 2665
Q ss_pred Ee------cccc-------ccCChhHH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 257 LM------KWIL-------HCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 257 ~~------~~~l-------h~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
++ ..++ ..++.++. .++|+.+.+.|||||+|+-.+-.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 42 2233 33433322 478999999999999999876554
No 323
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=93.62 E-value=0.15 Score=34.77 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=41.8
Q ss_pred hhHHHHhCC-CCCHHHHHHHhCcCCCCC--cchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 46 VFEIIAKAG-KLSAPEIAAQLQAQNVKA--PMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 46 lfd~L~~~g-~~t~~~la~~~~~~~~~~--~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
|++.|.+.+ |++..+|++.+.. ...+ +..+++.|++|...|++.. .+.+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~-~g~~~se~avRrrLr~me~~Glt~~---~g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKL-RGEELSEEAVRRRLRAMERDGLTRK---VGRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHh-cChhhhHHHHHHHHHHHHHCCCccc---cCCcccccCHHHH
Confidence 455666543 9999999999976 2323 4789999999999997774 2344556776654
No 324
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.52 E-value=0.4 Score=45.62 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=69.0
Q ss_pred ceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhC-----CCCCCceEEEcCCCC-CCCCC--CEEEeccccccCC
Q 018366 196 ERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDA-----PSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWD 266 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a-----~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~ 266 (357)
.+++-+|||.-.+...+-+.. ++++.+.++ +.+++.. ++++...+...|+.. .+++. |+|+....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S-~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSS-SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceecccc-HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 389999999998887776653 444444443 3333322 233567888889888 77764 9999999998853
Q ss_pred -hh-------HHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 267 -DD-------HCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 267 -~~-------~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
++ .....+..+.++|+|||+.+.+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 22 2335688999999999999988884
No 325
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=0.32 Score=38.52 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=66.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~ 253 (357)
+++++.++ -.+..+.+|+|.|.|....+.++.. -...+++++ |=.+...+- ..+..|..-|+++ ++.+.
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 45677666 3455799999999999888777664 234555665 433333321 1467888888887 66554
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
.++++- + +.-...+-.+++.-|+.+.+++.+-+-.|+
T Consensus 140 ~~vviFg-a-----es~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFG-A-----ESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEee-h-----HHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 343331 1 112234455777788889999988775554
No 326
>PHA02943 hypothetical protein; Provisional
Probab=93.45 E-value=0.16 Score=40.20 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=42.8
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
.|++.|. .|+.|..+||+++|+ ....++-.|..|+..|.+.++..+....|.+.+
T Consensus 15 eILE~Lk-~G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~ 69 (165)
T PHA02943 15 KTLRLLA-DGCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKVEIGRAAIWCLDE 69 (165)
T ss_pred HHHHHHh-cCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEEeecceEEEEECh
Confidence 3566674 468999999999999 888999999999999999987533234454433
No 327
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.24 E-value=0.23 Score=45.86 Aligned_cols=108 Identities=19% Similarity=0.364 Sum_probs=72.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec---hHHHHhCC-C------------CCCceEEEcCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL---PHVVQDAP-S------------YAGVEHVGGNMF 247 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~-~------------~~~v~~~~~D~~ 247 (357)
.+.+.+. ..+.....|+|+|.|.....++.....-.-+++.+ |.-+.... + ...++.+.+++.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 4455555 56778999999999999888777654334444444 33222211 1 134778888887
Q ss_pred CC------CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 248 DS------VPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 248 ~~------~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
++ .+.+++|+.+++.. +++. ..=++++..-+++|.+++-.++..+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F--dp~L-~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF--DPEL-KLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC--CHHH-HHhhHHHHhhCCCcceEeccccccc
Confidence 73 22349999999874 3343 3345588888999999999888776
No 328
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=93.14 E-value=0.21 Score=36.27 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=50.2
Q ss_pred HHHHHhChhHHHHhC-C-CCCHHHHHHHhCcCCCCCcchHHHHH----------HHHhcCcce-eeeccCCCcceecchh
Q 018366 39 QAAIQLGVFEIIAKA-G-KLSAPEIAAQLQAQNVKAPMMLDRML----------RLLVSHRVL-ECSVSSGERLYGLTPV 105 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g-~~t~~~la~~~~~~~~~~~~~l~~~L----------~~L~~~g~l-~~~~~~~~~~y~~t~~ 105 (357)
..=++..|+..|.+. + +.++.|||..++. ++..+..-| +.|+.+|++ .+....+...|++|+.
T Consensus 7 rS~~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~ 82 (90)
T PF07381_consen 7 RSKVRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEK 82 (90)
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChh
Confidence 355677788888876 3 8999999999999 777776655 368999999 4332234557999988
Q ss_pred chhhh
Q 018366 106 SKYFV 110 (357)
Q Consensus 106 ~~~l~ 110 (357)
+..+.
T Consensus 83 G~~~~ 87 (90)
T PF07381_consen 83 GKRIA 87 (90)
T ss_pred hhhHH
Confidence 76544
No 329
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=93.04 E-value=0.15 Score=38.45 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=41.5
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.++++.|..+||+.+|+ ++..+.+.++.|...|++..
T Consensus 4 ~D~~il~~L~~~~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKDARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 45678888888778999999999999 99999999999999999993
No 330
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=93.04 E-value=0.91 Score=36.21 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=46.5
Q ss_pred hhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 46 VFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|++...+.+. ...+|+.+..+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 56666653 36899999999999 899999999999999999986432222 3556666665443
No 331
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.00 E-value=0.19 Score=42.86 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=65.0
Q ss_pred cccCCCCceEEEEcCCcchHHHHHHhhCCC----C-----eEEEeechHHHHhCCCCCCceEEEcCCCCC---------C
Q 018366 189 YEGFQNVERLVDVGGGFGVTLSMITSKYPQ----I-----KAVNFDLPHVVQDAPSYAGVEHVGGNMFDS---------V 250 (357)
Q Consensus 189 l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~----~-----~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~ 250 (357)
+..+.+..|++|+....|.++.-+.++.-. . .++.+|+..|... ++|.-+.+|+..+ +
T Consensus 36 f~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 36 FQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHHh
Confidence 333456789999999999998888876521 1 2788887665442 4577788888762 1
Q ss_pred CC--CCEEEecc-----ccccCChh----HHHHHHHHHHHhCCCCCEEEE
Q 018366 251 PE--GDAILMKW-----ILHCWDDD----HCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 251 p~--~D~i~~~~-----~lh~~~~~----~~~~~L~~~~~~LkpgG~l~i 289 (357)
.. +|+|+|-. -+|+++.- -....|.-...+|||||.++-
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 22 39998854 47776421 123445556678999999875
No 332
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.94 E-value=1.8 Score=36.13 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=74.1
Q ss_pred CCceEEEEcCCcchHHHHHH----hhCCCCeEEEeec--hHHHHhCCCCCCceEEEcCCCCC-CC-------CC--CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMIT----SKYPQIKAVNFDL--PHVVQDAPSYAGVEHVGGNMFDS-VP-------EG--DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~----~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~D~~~~-~p-------~~--D~i~ 257 (357)
++..|+++|.-.|..+...+ ......+++++|+ .+.-..+++.++|.|+.++-.++ +. .. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 36799999998886554443 3334467777776 22223344468999999987662 11 11 6778
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIP 298 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~ 298 (357)
|-..-|+. +.+...|+-...+|.-|.++++-|...++-+
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 88888887 8888999999999999999999998887644
No 333
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.82 E-value=0.037 Score=41.58 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=43.3
Q ss_pred CEEEeccccc----cCChhHHHHHHHHHHHhCCCCCEEEEEeec-cCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 254 DAILMKWILH----CWDDDHCLRILKNCYKAIPDNGKVIVMNSI-VPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 254 D~i~~~~~lh----~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
|+|+|..|-- +|.|+-...+++++++.|+|||.+++ |+- +.+..... .......-.+ ..-...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTT---TS-HHHHHHH-----HH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHH
Confidence 7777765432 36788899999999999999999888 321 10000000 0000010111 111235667
Q ss_pred HHHHHHH--cCCceeEEeecC
Q 018366 329 FTELAIA--AGFKHINFASCV 347 (357)
Q Consensus 329 ~~~ll~~--aGf~~~~~~~~~ 347 (357)
+...|.+ .||..++.....
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888887 699998765553
No 334
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.58 E-value=2.8 Score=36.46 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCCCCCC---C--CEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFDSVPE---G--DAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~~~p~---~--D~i~~~~~l 262 (357)
.+++||=+|=..- .+.+++-..+..+++++|+ +.+++..++ .-.|+.+..|+.+++|. + |+++.-=.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 3578999985544 3333444455568888888 555554332 12488999999998885 2 99886332
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
++.+-..-++.+..++||..|.....-....+. .. ...-++++.+.+.||.+.+
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-----------s~-------------~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-----------SP-------------DKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------------H-------------HHHHHHHHHHHTS--EEEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-----------cH-------------HHHHHHHHHHHHCCcCHHH
Confidence 344677899999999999666333332221110 00 0123456777788888888
Q ss_pred Eeec
Q 018366 343 FASC 346 (357)
Q Consensus 343 ~~~~ 346 (357)
+.+.
T Consensus 176 ii~~ 179 (243)
T PF01861_consen 176 IIPD 179 (243)
T ss_dssp EEEE
T ss_pred HHhh
Confidence 7664
No 335
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.49 E-value=0.57 Score=39.06 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=61.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCC---CC-C--CCEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDS---VP-E--GDAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~---~p-~--~D~i~~~ 259 (357)
...++||+=+|+|.++.+.+.+.-. +++.+|. .......++ ..++.++..|...- .+ . .|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 3579999999999999999998643 6677775 444444433 25678888887641 11 2 2999885
Q ss_pred cccccCChhHHHHHHHH--HHHhCCCCCEEEEEe
Q 018366 260 WILHCWDDDHCLRILKN--CYKAIPDNGKVIVMN 291 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~--~~~~LkpgG~l~i~e 291 (357)
=-.+. .--+....+.. -..+|+|+|.+++=.
T Consensus 122 PPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAK-GLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 55541 11111222222 346799988877733
No 336
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.48 E-value=0.23 Score=46.56 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=52.1
Q ss_pred CCceEEEcCCCC---CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 237 AGVEHVGGNMFD---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 237 ~~v~~~~~D~~~---~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
++|+++.+++.+ ..|.+ |.+++.+.+.+++++...+.++.+.+.++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999998877 34444 9999999999999999999999999999999999997765543
No 337
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=92.43 E-value=0.14 Score=29.25 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcce
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 89 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l 89 (357)
|+|-.|||+.+|+ .++-++|.|.-|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5789999999999 899999999999998875
No 338
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=92.30 E-value=0.25 Score=33.04 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=32.9
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 52 KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 52 ~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+.++++..+||+.+++ .+.-+...++-|...|++..+
T Consensus 19 ~~~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 19 EGGPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp CTSSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 4459999999999999 899999999999999999974
No 339
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=92.27 E-value=0.14 Score=45.91 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=66.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCCC-----CC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSVP-----EG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~p-----~~-D~i~~ 258 (357)
...+|||+=|=||.++...+... -.+++.+|. ..+++.+++. .+++++..|+++.+. .. |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 45799999999999999877643 346899998 6677766642 478999999987221 12 99975
Q ss_pred cc---ccccCC-hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KW---ILHCWD-DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~---~lh~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-= .=..+. ..+..++++++.+.|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 11 000111 23556899999999999999887654
No 340
>PRK06474 hypothetical protein; Provisional
Probab=92.18 E-value=0.28 Score=40.82 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=53.5
Q ss_pred HHHHHHHHHhChhHHHHhCC-CCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccC--C---Ccceecchhch
Q 018366 35 PMATQAAIQLGVFEIIAKAG-KLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSS--G---ERLYGLTPVSK 107 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g-~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~---~~~y~~t~~~~ 107 (357)
..+|....+..|++.|...+ +.|+.+|++.+ ++ +..-+.|.|+.|+..|+|...... + ...|++++.+-
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45677788899999998755 49999999999 66 777899999999999999975421 1 23577766543
No 341
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.18 E-value=0.23 Score=47.43 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=64.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC--C-CC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD--S-VP- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~-~p- 251 (357)
..+.+.+. ..+..+|+|+=||.|.++..+++... +++++++ ++.++.|++. .++.|..+|.++ + ..
T Consensus 283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34444444 45667999999999999999996653 5666666 7777777652 568999999877 2 21
Q ss_pred -CC-CEEEeccccccCChhHHH-HHHHHHHHhCCCCCEEEE
Q 018366 252 -EG-DAILMKWILHCWDDDHCL-RILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 252 -~~-D~i~~~~~lh~~~~~~~~-~~L~~~~~~LkpgG~l~i 289 (357)
.. |+|+.-= |..-+. .+++.+.+ ++|...++|
T Consensus 360 ~~~~d~VvvDP-----PR~G~~~~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 360 GYKPDVVVVDP-----PRAGADREVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred cCCCCEEEECC-----CCCCCCHHHHHHHHh-cCCCcEEEE
Confidence 12 8887622 222222 45555444 567677777
No 342
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=92.10 E-value=0.24 Score=40.32 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=40.1
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.-|+++|-..|.+|-++||..+|+ +..-++++|..|...|++...
T Consensus 17 v~Vl~aL~~~~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIKGEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 447888886679999999999999 899999999999999999753
No 343
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=92.03 E-value=0.36 Score=39.14 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=45.9
Q ss_pred HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 49 IIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 49 ~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
.....|++...+||+.+++ .+.-+...++-|...|++... .-+.+.+|+.+....
T Consensus 18 l~~~~~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~---~y~gi~LT~~G~~~a 72 (154)
T COG1321 18 LLEEKGFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYE---PYGGVTLTEKGREKA 72 (154)
T ss_pred HHhccCcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEe---cCCCeEEChhhHHHH
Confidence 3334469999999999999 889999999999999999975 357899998877444
No 344
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=91.85 E-value=0.2 Score=47.92 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=42.4
Q ss_pred cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC
Q 018366 191 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD 248 (357)
Q Consensus 191 ~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 248 (357)
+++....++|+-||||.++..+++... +++++++ |+.++.|+.. .+.+|++|-.++
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 366778999999999999999998865 4555555 7777777653 568899994444
No 345
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=91.80 E-value=0.13 Score=37.66 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=45.8
Q ss_pred hHHHH--hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 47 FEIIA--KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 47 fd~L~--~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
||.|. ..|+..+--|.-.+++ +......+++.|+..|++.....+....|.+|+.+..|+.
T Consensus 21 ~dIL~~~~~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 21 FDILKAISEGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHhcCCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHH
Confidence 44444 3457888889999999 9999999999999999666421111237999999998865
No 346
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=91.50 E-value=0.44 Score=39.88 Aligned_cols=64 Identities=16% Similarity=0.005 Sum_probs=48.9
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++..|...++.|..+||+.+++ ++.-+.++++-|+..|+|.+...+++. ...+|+.+..+..
T Consensus 48 ~~iL~~L~~~~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 48 HHILWIAYHLKGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 457777777678999999999999 888899999999999999976433222 2556666665543
No 347
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=91.48 E-value=0.24 Score=48.28 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=56.8
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCC
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKD 114 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~ 114 (357)
..+..++..|...++.|..+||+.+++ ++..+.+.++.|.+.|+|....+ ....|.+|+.+..++....
T Consensus 6 ~~e~~vL~~L~~~~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~-~~~~i~LTeeG~~~~~~g~ 74 (489)
T PRK04172 6 PNEKKVLKALKELKEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER-VEEVYVLTEEGKKYAEEGL 74 (489)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee-eEEEEEECHHHHHHHHhcC
Confidence 345667778877668999999999999 99999999999999999997532 2467999999997776544
No 348
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=91.41 E-value=0.15 Score=47.52 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=41.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNM 246 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~ 246 (357)
...+++.++ .++. +|||+=||.|.++..+++... ++++++. +++++.|+.. .+++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 345555555 4443 899999999999999999864 5777776 7888777642 5788887764
No 349
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.39 E-value=4.6 Score=33.15 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=72.7
Q ss_pred EcCCcchHHHHHHhhCC---CCeEEEeec-hHHHHhCCC---------CCCceE-EEcCCCC--C-C--CCC--CEEEec
Q 018366 201 VGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDAPS---------YAGVEH-VGGNMFD--S-V--PEG--DAILMK 259 (357)
Q Consensus 201 iG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~-~~~D~~~--~-~--p~~--D~i~~~ 259 (357)
||=|.=.++..|++.+. ++.++.+|. .++.+.-.. ..++.+ ...|..+ . . ... |.|+++
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 67777788999999887 444566775 333333221 133443 3335554 1 2 122 999887
Q ss_pred cccccCC----h-------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 260 WILHCWD----D-------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 260 ~~lh~~~----~-------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
.-..... . +-...+++.+...|+++|.+.|.-..-+ .++.=+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W~ 135 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSWN 135 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCcccc
Confidence 6543311 1 2235788889999999999998543211 112223
Q ss_pred HHHHHHHcCCceeEEeecC
Q 018366 329 FTELAIAAGFKHINFASCV 347 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~~ 347 (357)
+.++.+++||..++..+..
T Consensus 136 i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHhcCCEEEEEecCC
Confidence 4577788999999888765
No 350
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.11 E-value=1.6 Score=40.08 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCCCceEEEEcCC-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcC---CCCCCCC-CCEEEeccccccC
Q 018366 192 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN---MFDSVPE-GDAILMKWILHCW 265 (357)
Q Consensus 192 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D---~~~~~p~-~D~i~~~~~lh~~ 265 (357)
..+..+|+=+|+| -|..+.++++..- .+++.+|. ++-.+.+++...-.++... ..+...+ .|+|+-.-.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---- 238 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---- 238 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence 4567788888877 4578888998765 89999998 6666667766555555543 2222222 377775443
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
...+....+.|++||+++++-..
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 23467778899999999998875
No 351
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=90.93 E-value=0.46 Score=36.38 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=51.9
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 39 QAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 39 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.+..+..++..|...++.+..+||+.+++ ++..+.++++-|+..|+|.+.....++ .+.+|+.+..+..
T Consensus 20 lt~~q~~~L~~l~~~~~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~ 91 (126)
T COG1846 20 LTPPQYQVLLALYEAGGITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLE 91 (126)
T ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHH
Confidence 45566777778887655555999999999 899999999999999999986433222 4667777665554
No 352
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=90.78 E-value=0.62 Score=35.60 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=38.7
Q ss_pred HhChhHHHHhC-CCCCHHHHHHHhCcCC-CCCcchHHHHHHHHhcCcceeeec
Q 018366 43 QLGVFEIIAKA-GKLSAPEIAAQLQAQN-VKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 43 ~lglfd~L~~~-g~~t~~~la~~~~~~~-~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
+.-|++.|... ++.|++||.+.+.-+. ..+..-+.|.|+.|+..|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 44577777764 3899999999984210 116778999999999999999764
No 353
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.71 E-value=0.65 Score=41.57 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=53.0
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCe-EEEeec-hHHHHhCCCC-----CCceEEEcCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-----AGVEHVGGNMF 247 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 247 (357)
...++++.+. ..+....+|.-=|.|..+..+++.+|... .+++|. |.+++.+++. +|+.++.++|.
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 3457777777 66778999999999999999999998765 899998 8888888762 57777776654
No 354
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=90.57 E-value=0.53 Score=41.40 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=51.3
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+..|..+.-+|-..|+.|+.|||+..|+ +...+...|+.|...|++...+ ..+..|+.-+...
T Consensus 15 t~yEa~vY~aLl~~g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~-g~P~~y~av~p~~ 77 (247)
T COG1378 15 TEYEAKVYLALLCLGEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE-GRPKKYRAVPPEE 77 (247)
T ss_pred CHHHHHHHHHHHHhCCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC-CCCceEEeCCHHH
Confidence 4456667788888789999999999999 8889999999999999999753 3467887655444
No 355
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=90.51 E-value=0.4 Score=31.45 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=31.1
Q ss_pred CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.. |..+||+.+++ .+..+++.++.|...|++...
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~ 53 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR 53 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 45 89999999999 899999999999999999864
No 356
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=90.41 E-value=0.64 Score=31.90 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=41.6
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
..++..|.+ ++.|..+||+.+++ ....+.+.++.|...|+.... . +..|.+.
T Consensus 3 ~~il~~L~~-~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~--~-~~g~~l~ 54 (69)
T TIGR00122 3 LRLLALLAD-NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT--V-GKGYRLP 54 (69)
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe--c-CCceEec
Confidence 456778887 48899999999999 899999999999999996653 2 3455543
No 357
>PRK10870 transcriptional repressor MprA; Provisional
Probab=90.28 E-value=0.6 Score=38.82 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=48.4
Q ss_pred HhChhHHHHh--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 43 QLGVFEIIAK--AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
+..++-.|.. .++.|..+||+.+++ ++..+.+.++-|+..|+|.+...++++ ...+|+.+..++.
T Consensus 57 q~~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3446666653 237899999999999 899999999999999999986433222 3567777665554
No 358
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=90.02 E-value=0.78 Score=35.23 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=44.3
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 39 QAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 39 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
...+...|.+.+.+.|..|+.+++..+|+ +...+.++++.|++-|-|..+
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 34566778888888899999999999999 899999999999999999963
No 359
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=90.01 E-value=0.8 Score=33.75 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=36.8
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
+.|..|||+.+|+ .+..+.|.|..|+..|+|... .+.+.+..+
T Consensus 47 ~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~--~~~~~~~~n 89 (95)
T TIGR01610 47 RVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ--GMMGIVGVN 89 (95)
T ss_pred ccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee--cCCceeecC
Confidence 8999999999999 899999999999999999964 234666654
No 360
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=89.98 E-value=0.44 Score=45.79 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=58.7
Q ss_pred HHHhChhHHHHhCCC-CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCCC
Q 018366 41 AIQLGVFEIIAKAGK-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDG 115 (357)
Q Consensus 41 a~~lglfd~L~~~g~-~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~~ 115 (357)
+.+..|+..|...++ .+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.+..++....+
T Consensus 3 ~~e~~iL~~l~~~~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 3 MAEEALLGALSNNEEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQD-IKRETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence 467778888887555 799999999999 8999999999999999999763 346789999999987776554
No 361
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=89.39 E-value=0.59 Score=36.85 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=38.9
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 52 KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 52 ~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
..|+.|.+|||.++|+ ..+.+..-|-++++-|-|.++..++.=+|+++
T Consensus 3 q~Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q~gkfRy~iP 50 (155)
T PF07789_consen 3 QEGAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQNGKFRYCIP 50 (155)
T ss_pred ccCcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecCCCceEEeCC
Confidence 3479999999999999 88999999999999999998643333346553
No 362
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=89.28 E-value=2 Score=40.39 Aligned_cols=111 Identities=22% Similarity=0.378 Sum_probs=62.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcch----HHHHHHhhC---CCCeEEEeechH-----HHHhCCCC-------CC--ceE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGV----TLSMITSKY---PQIKAVNFDLPH-----VVQDAPSY-------AG--VEH 241 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~~~-------~~--v~~ 241 (357)
+.|++.+.+ .+..+|+|+|.|.|. +...|+.+. |.+++|+++.|. .++.+.++ -+ ++|
T Consensus 100 qaIleA~~g-~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFEG-ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhcc-CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 467887773 466799999999994 455666653 677889998622 22222211 12 344
Q ss_pred EEc--CCCCCC-------CCCC--EEEeccccccCChh------HHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 242 VGG--NMFDSV-------PEGD--AILMKWILHCWDDD------HCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 242 ~~~--D~~~~~-------p~~D--~i~~~~~lh~~~~~------~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
... +-.+++ ..++ +|-+...||+..++ ....+|+.++ .|+|. .++++|.-.+.
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~-vvv~~E~ea~~ 248 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPK-VVVLVEQEADH 248 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCC-EEEEEeecCCC
Confidence 442 211111 1123 33456677888632 2345776665 67886 55555654433
No 363
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=89.21 E-value=0.62 Score=34.18 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=38.4
Q ss_pred HHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 58 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 58 ~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
+.+||+.+++ ++..+.+.++.|+..|+|... .+..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~---~~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE---PYRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc---CCCceEechhHHHHH
Confidence 5689999999 899999999999999999974 235788888776544
No 364
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=88.92 E-value=1.5 Score=33.83 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCcceeeeccCC--
Q 018366 20 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSSG-- 96 (357)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-- 96 (357)
-.++...+++.+-|..-+|+...+ |+.-..||-..++ + .+..|.+-|+.|+..|++.+.....
T Consensus 11 c~~~~~l~~ig~kW~~lIl~~L~~----------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~P 76 (120)
T COG1733 11 CPVEEALEVIGGKWTLLILRDLFD----------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEEP 76 (120)
T ss_pred CCHHHHHHHHcCccHHHHHHHHhc----------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCCC
Confidence 347788888888888887776543 4788888888887 8 8889999999999999999754321
Q ss_pred -Ccceecchhchhhhc
Q 018366 97 -ERLYGLTPVSKYFVS 111 (357)
Q Consensus 97 -~~~y~~t~~~~~l~~ 111 (357)
.-.|++|+.+..+..
T Consensus 77 prveY~LT~~G~~L~~ 92 (120)
T COG1733 77 PRVEYRLTEKGRDLLP 92 (120)
T ss_pred ceeEEEEhhhHHHHHH
Confidence 345888888765553
No 365
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=88.73 E-value=1.2 Score=29.67 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 56 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 56 ~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.|..+||+.+++ ++..+++.+..|...|+++.
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 469999999999 89999999999999999985
No 366
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=88.55 E-value=0.65 Score=38.10 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
...+..|+..|.++|..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4467889999999889999999999999 88999999999999999983
No 367
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=88.44 E-value=0.62 Score=30.23 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=32.4
Q ss_pred ChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCc
Q 018366 45 GVFEII-AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHR 87 (357)
Q Consensus 45 glfd~L-~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g 87 (357)
.|+..| ...++.|+++||+.+++ .++-+.+-+..|...|
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 356667 44447999999999999 9999999999999999
No 368
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=88.41 E-value=0.85 Score=33.28 Aligned_cols=47 Identities=26% Similarity=0.264 Sum_probs=42.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..+.|+..|...||-.+.-||..+++ +...+...|+.|+.+|+|+++
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 45667788888789999999999999 999999999999999999975
No 369
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.23 E-value=3.3 Score=39.04 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcC----CCC---CC-CC-C-CEEEec
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN----MFD---SV-PE-G-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D----~~~---~~-p~-~-D~i~~~ 259 (357)
..+..+||.+|||. |..+..+++...-.+++.++. ++..+.+++...+.++... +.+ .. +. + |+|+-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45567899999987 889999999875435777765 6666666544223332211 111 11 11 3 777543
Q ss_pred c---------------ccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 260 W---------------ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~---------------~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
- +|+-. .+....++.+.+.|+|+|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLE--TDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccc--cCchHHHHHHHHHhccCCEEEEEcC
Confidence 1 11111 1224578889999999999998754
No 370
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=88.22 E-value=0.79 Score=37.10 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=42.6
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
..+..|++.|.++|..|..+||+++|+ .+..+.+=++.|...|++..
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 356788999999889999999999999 89999999999999999983
No 371
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=88.20 E-value=0.53 Score=37.32 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=46.8
Q ss_pred eEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCCC-C-CEEEecccc-cc------CChhHHHHHHHHHHH
Q 018366 220 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVPE-G-DAILMKWIL-HC------WDDDHCLRILKNCYK 279 (357)
Q Consensus 220 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p~-~-D~i~~~~~l-h~------~~~~~~~~~L~~~~~ 279 (357)
++.++|+ ++.++..+++ .+|+++..+-.+ .++. . |+++++.-. -. -..+.....|+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 4678898 7777766542 578888775544 3455 3 887765432 11 012445689999999
Q ss_pred hCCCCCEEEEEeec
Q 018366 280 AIPDNGKVIVMNSI 293 (357)
Q Consensus 280 ~LkpgG~l~i~e~~ 293 (357)
.|+|||.+.|+-..
T Consensus 81 lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 81 LLKPGGIITIVVYP 94 (140)
T ss_dssp HEEEEEEEEEEE--
T ss_pred hhccCCEEEEEEeC
Confidence 99999999997653
No 372
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=88.07 E-value=0.86 Score=40.01 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=52.4
Q ss_pred CCceEEEEcCCcchHHHH---HHhhC--CCCeEEEeec----hHHHH---------------------------hCCCC-
Q 018366 194 NVERLVDVGGGFGVTLSM---ITSKY--PQIKAVNFDL----PHVVQ---------------------------DAPSY- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~---l~~~~--p~~~~~~~D~----~~~~~---------------------------~a~~~- 236 (357)
-+..|+|+||-.|..+.. +++.+ ++-++.++|. |+.-. .....
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 346899999998875543 34433 3446777774 22211 01110
Q ss_pred ---CCceEEEcCCCCCCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 237 ---AGVEHVGGNMFDSVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 237 ---~~v~~~~~D~~~~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+++.++.|.|.+.+|.. +-|-+.++=.++- +.....|..++..|.|||.|++-|
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY-esT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY-ESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH-HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch-HHHHHHHHHHHhhcCCCeEEEEeC
Confidence 46889999987745532 2222222111222 456799999999999999999944
No 373
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=87.84 E-value=2.8 Score=36.34 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=65.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-----hHHHHhCCCCCCceEEEcCCCCCCCC----C--CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFDSVPE----G--DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~p~----~--D~i~~~ 259 (357)
.++..+||-+|+++|....++.... |+--+..++. ...+..|+++++|--+.-|...|.-- + |+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 4677899999999999988887754 4444444443 35778888888888888888775431 2 76654
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+-+ | ++..-+-=++.--||+||.++|.=
T Consensus 233 Dvaq--p-dq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 233 DVAQ--P-DQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred cCCC--c-hhhhhhhhhhhhhhccCCeEEEEE
Confidence 2221 2 233444446677899999888743
No 374
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=87.45 E-value=0.91 Score=43.85 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=58.0
Q ss_pred HHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCCC
Q 018366 41 AIQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDG 115 (357)
Q Consensus 41 a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~~ 115 (357)
..+..|+..|.+ .+..+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.+..++....|
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEM-KKSNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCH
Confidence 456667788886 347899999999999 8999999999999999999764 346789999999987776554
No 375
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=87.31 E-value=1.5 Score=30.77 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=39.2
Q ss_pred HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 51 AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 51 ~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
..+.|+...+||+.+++ ++.-++.-+..|.++|+|+..+.. .+.|.-|..+.
T Consensus 19 ~~~~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p~~-s~GriPT~~aY 70 (78)
T PF03444_consen 19 ETGEPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQPHP-SGGRIPTDKAY 70 (78)
T ss_pred hcCCCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCCCC-CCCCCcCHHHH
Confidence 33349999999999999 888999999999999999853211 34555454443
No 376
>PRK05638 threonine synthase; Validated
Probab=87.14 E-value=1.1 Score=43.21 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=49.5
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhC--cCCCCCcchHHHHHHHHhcCcceeeeccC-CCcceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQ--AQNVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~t~~~~~l~ 110 (357)
.++-|+..|.+ ++.+..||++.++ + .+..+.+.|+.|...|+|+...+. ....|++|+.+..++
T Consensus 372 ~r~~IL~~L~~-~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 372 TKLEILKILSE-REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLL 438 (442)
T ss_pred hHHHHHHHHhh-CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHH
Confidence 35557888887 4899999999998 6 788999999999999999853112 233588888776544
No 377
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=86.84 E-value=0.96 Score=40.79 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=39.4
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC--------CCCceEEEc----CCCCCC--C-CC-CEEE
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGG----NMFDSV--P-EG-DAIL 257 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~----D~~~~~--p-~~-D~i~ 257 (357)
..++||||+|...+=--|..+..++++++.|+ +..++.|++ ..+|+++.. +++..+ + +. |+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 56899999998865433444445899999998 777777764 256777654 344422 1 22 9999
Q ss_pred eccccccCCh
Q 018366 258 MKWILHCWDD 267 (357)
Q Consensus 258 ~~~~lh~~~~ 267 (357)
|+=-+|.-.+
T Consensus 183 CNPPFy~s~~ 192 (299)
T PF05971_consen 183 CNPPFYSSQE 192 (299)
T ss_dssp E-----SS--
T ss_pred cCCccccChh
Confidence 9998887543
No 378
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=86.82 E-value=0.95 Score=39.98 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=41.1
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 43 QLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 43 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
+..+.+.|.+.| ..+-+||.+++|+ ++.-+.|.|+-|+.+|++++..
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEEE
Confidence 445778887766 5999999999999 8899999999999999999864
No 379
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.59 E-value=2.1 Score=37.54 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=64.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC--CC-CEEEeccccccCChhH
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP--EG-DAILMKWILHCWDDDH 269 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p--~~-D~i~~~~~lh~~~~~~ 269 (357)
.+...-+|+|...|.++-.|.++ +..++.+|...|.+.....++|+....|-+.-.| .. |-.+|-.| +.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------Ek 281 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------EK 281 (358)
T ss_pred cCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------cC
Confidence 46789999999999999999987 6889999987777777777889999999888544 33 77777554 44
Q ss_pred HHHHHHHHHHhCCCC
Q 018366 270 CLRILKNCYKAIPDN 284 (357)
Q Consensus 270 ~~~~L~~~~~~Lkpg 284 (357)
..++=..+...|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 445555666676654
No 380
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.52 E-value=2.4 Score=43.21 Aligned_cols=96 Identities=11% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhC-------C-----CCeEEEeec-h---HHHHhCC----------------------C
Q 018366 194 NVERLVDVGGGFGVTLSMITSKY-------P-----QIKAVNFDL-P---HVVQDAP----------------------S 235 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~ 235 (357)
..-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 44799999999998766655433 3 356777774 2 1111110 0
Q ss_pred -------CCC--ceEEEcCCCCC---CCC-CCEEEecccccc-CChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 236 -------YAG--VEHVGGNMFDS---VPE-GDAILMKWILHC-WDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 236 -------~~~--v~~~~~D~~~~---~p~-~D~i~~~~~lh~-~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
..+ +++..+|+.+- +.. .|++++-..=-. -|+=...++|+++++.++|||++.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 012 33555776652 222 287775332111 1111235889999999999988875
No 381
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=86.36 E-value=1.1 Score=36.01 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=42.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
..+..|+..|.++++.+..+||+++|+ .+..+.+-++-|...|++..
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceee
Confidence 456778899999889999999999999 89999999999999999995
No 382
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=86.00 E-value=1.1 Score=31.41 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..+++.+.+.. +.+..+|+..++. +++.+...++.|...|++.+.
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 4556677777754 8999999999999 999999999999999999964
No 383
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=85.69 E-value=0.6 Score=35.12 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=33.5
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|++.|...|.++-++||..+++ ++.-++++|..|...|++...
T Consensus 18 Il~~L~~~~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 18 ILDALLRKGELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHH--B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence 6788886678999999999999 899999999999999999864
No 384
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=85.35 E-value=9.1 Score=34.00 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=44.4
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcC
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSN 112 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~ 112 (357)
|+.+|-.+ -+.-.|++...+ +-..+..+++.|...|++... .+...+|..+..++..
T Consensus 27 vl~ail~~--~d~wkIvd~s~~----plp~v~~i~~~l~~egiv~~~----~g~v~~TekG~E~~e~ 83 (354)
T COG1568 27 VLSAILAT--NDFWKIVDYSDL----PLPLVASILEILEDEGIVKIE----EGGVELTEKGEELAEE 83 (354)
T ss_pred HHHHHHcC--cchHhhhhhccC----CchHHHHHHHHHHhcCcEEEe----cCcEeehhhhHHHHHH
Confidence 44555553 388888888888 788999999999999999963 3448889888877764
No 385
>PRK13699 putative methylase; Provisional
Probab=84.62 E-value=4.3 Score=35.23 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred ceEEEcCCCC---CCCCC--CEEEec-------------cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCC
Q 018366 239 VEHVGGNMFD---SVPEG--DAILMK-------------WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEV 300 (357)
Q Consensus 239 v~~~~~D~~~---~~p~~--D~i~~~-------------~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~ 300 (357)
+++..+|..+ .+|+. |+|+.. ..-.....+-...++++++++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i----------- 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS----------- 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE-----------
Q ss_pred CchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 301 SSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
-........+...++++||......
T Consensus 71 -------------------f~~~~~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 71 -------------------FYGWNRVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred -------------------EeccccHHHHHHHHHHCCCEEeeEE
No 386
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=84.42 E-value=1.4 Score=33.71 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=33.6
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
++|++|||+.+.+ .++.++.+|+-|...|.|+..+.
T Consensus 19 ~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~pg 54 (115)
T PF12793_consen 19 EVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQPG 54 (115)
T ss_pred ceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeeeCC
Confidence 7899999999999 89999999999999999999643
No 387
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=84.30 E-value=1.3 Score=29.70 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=35.5
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.|++.|-+.|+.|+.+|.+.+++ ++..++.-|-.|...+++..
T Consensus 17 ~V~~~Ll~~G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 17 KVGEVLLSRGRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY 59 (62)
T ss_dssp HHHHHHHHC-SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence 36677777779999999999999 89999999999999999985
No 388
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=84.15 E-value=1.6 Score=38.61 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=40.9
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
...|.+.|.+.|..++.|||+.+++ .+.-++|-|+.|...|++.+.
T Consensus 7 ~~~Il~~l~~~~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 7 HQILLELLAQLGFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3447888888789999999999999 899999999999999999863
No 389
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=83.86 E-value=1.7 Score=38.50 Aligned_cols=77 Identities=10% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCE
Q 018366 208 TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGK 286 (357)
Q Consensus 208 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~ 286 (357)
++.+|.+..++.+++++|. +..++.+.+.+-+.-...+ .+.+.+.|+|++.- |.....++|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCcE
Confidence 4678888889999999998 6677766543333322222 11233448888754 446677888888888888876
Q ss_pred EEEE
Q 018366 287 VIVM 290 (357)
Q Consensus 287 l~i~ 290 (357)
+.=+
T Consensus 75 v~Dv 78 (258)
T PF02153_consen 75 VTDV 78 (258)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 6544
No 390
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=83.58 E-value=6.2 Score=35.91 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=50.4
Q ss_pred CceEEEEcCCc-c-hHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHH
Q 018366 195 VERLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCL 271 (357)
Q Consensus 195 ~~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~ 271 (357)
..+|.=||+|. | .++..+.+......++++|. ++..+.+++..-......+..+.....|+|++.- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 35788899885 3 34455554433246788887 5555544432211111112111223348887754 334456
Q ss_pred HHHHHHHHhCCCCCEEEEE
Q 018366 272 RILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 272 ~~L~~~~~~LkpgG~l~i~ 290 (357)
.+++.+...++||..++.+
T Consensus 81 ~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred HHHHHHHhhCCCCCEEEeC
Confidence 7788888888988765543
No 391
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=83.39 E-value=2.1 Score=36.24 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCCHHHHHHHhCcCCCCC-cchHHHHHHHHhcCcceee
Q 018366 55 KLSAPEIAAQLQAQNVKA-PMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~-~~~l~~~L~~L~~~g~l~~ 91 (357)
+.|..|||+.+|+ . +.-+.+.|+.|...|++..
T Consensus 25 ~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~ 58 (199)
T TIGR00498 25 PPSIREIARAVGL----RSPSAAEEHLKALERKGYIER 58 (199)
T ss_pred CCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEec
Confidence 6899999999999 7 8899999999999999996
No 392
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=83.08 E-value=2.5 Score=34.94 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=38.5
Q ss_pred CCHHHHHHHh--CcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 56 LSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 56 ~t~~~la~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
.++.+||+++ ++ ...-++.-|+.|+.+|++.+ +++|.|..|..+
T Consensus 40 ~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k---~~~g~y~~t~~~ 85 (171)
T PF14394_consen 40 PDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKK---DGDGKYVQTDKS 85 (171)
T ss_pred CCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEE---CCCCcEEEecce
Confidence 3999999999 88 88999999999999999996 446799887755
No 393
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=83.07 E-value=1.4 Score=30.83 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=23.2
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHH
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLL 83 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L 83 (357)
++..|.++.|+|+++||.++|+ +.+.+...|..+
T Consensus 29 LLr~LA~G~PVt~~~LA~a~g~----~~e~v~~~L~~~ 62 (77)
T PF12324_consen 29 LLRLLAKGQPVTVEQLAAALGW----PVEEVRAALAAM 62 (77)
T ss_dssp HHHHHTTTS-B-HHHHHHHHT------HHHHHHHHHH-
T ss_pred HHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHhC
Confidence 7788998669999999999999 666666655544
No 394
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=83.01 E-value=2.3 Score=36.67 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCCCCchhhhhhcc-CChhhHH
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMALP-LDKVFME 132 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 132 (357)
+.....|||+++|+ .+..++..++-|+..|++..+ +.+.|..|..+..++...- ..++.+.... ..-.+..
T Consensus 24 p~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~---gR~~Y~iTkkG~e~l~~~~-~dlr~f~~ev~~~l~~~~ 95 (260)
T COG1497 24 PRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE---GRGEYEITKKGAEWLLEQL-SDLRRFSEEVELVLDYVM 95 (260)
T ss_pred CCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec---CCeeEEEehhHHHHHHHHH-HHHHHHHHHHHHHHhhHH
Confidence 47899999999999 889999999999999999963 4579999999886554321 1244333322 1112344
Q ss_pred HhhhhHH-HHhcCCCc
Q 018366 133 SWLGLRD-AVMEGGIP 147 (357)
Q Consensus 133 ~~~~l~~-~l~~g~~~ 147 (357)
.|..+++ -++.|.+-
T Consensus 96 vw~AIA~edI~~Gd~V 111 (260)
T COG1497 96 VWTAIAKEDIKEGDTV 111 (260)
T ss_pred HHHHhhHhhhccCCEE
Confidence 5666554 35555543
No 395
>PF13730 HTH_36: Helix-turn-helix domain
Probab=83.00 E-value=1.4 Score=28.46 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=27.9
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcce
Q 018366 56 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 89 (357)
Q Consensus 56 ~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l 89 (357)
.|.+.||+.+|+ .++-+.+.++.|+..|++
T Consensus 26 pS~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 389999999999 899999999999999986
No 396
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=82.86 E-value=2.4 Score=25.91 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=25.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHH
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLR 81 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~ 81 (357)
++..|+..|.+.+..+..+||+.+|+ .+..+.+=++
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lgl----S~~~v~~Ri~ 39 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELGL----SESTVRRRIR 39 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHTS-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHCc----CHHHHHHHHH
Confidence 45678888998889999999999999 6665554443
No 397
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=82.77 E-value=7.7 Score=33.15 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=62.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCC--eEEEeec-hHHHHhCCCC------------------------
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI--KAVNFDL-PHVVQDAPSY------------------------ 236 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~~------------------------ 236 (357)
..+..++ -+++.++-|-.||.|.++.-+.-.+++. .+++-|+ +++++.|+++
T Consensus 42 R~l~~l~-~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246)
T PF11599_consen 42 RALHYLE-GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246)
T ss_dssp HHHCTSS-S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhhc-CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence 3444454 3567899999999999887776665543 2455566 7777776541
Q ss_pred ------------------------CCceEEEcCCCCCC-------CCC-CEEEec---cccccCC----hhHHHHHHHHH
Q 018366 237 ------------------------AGVEHVGGNMFDSV-------PEG-DAILMK---WILHCWD----DDHCLRILKNC 277 (357)
Q Consensus 237 ------------------------~~v~~~~~D~~~~~-------p~~-D~i~~~---~~lh~~~----~~~~~~~L~~~ 277 (357)
.-..+...|++++. +.+ |+|+.- .-+-+|. .+-..++|..+
T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l 200 (246)
T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL 200 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH
Confidence 01457788988832 223 888642 1233443 34467999999
Q ss_pred HHhCCCCCEEEEEe
Q 018366 278 YKAIPDNGKVIVMN 291 (357)
Q Consensus 278 ~~~LkpgG~l~i~e 291 (357)
+.+|.+++.+++++
T Consensus 201 ~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 201 APVLPERSVVAVSD 214 (246)
T ss_dssp HCCS-TT-EEEEEE
T ss_pred HhhCCCCcEEEEec
Confidence 99996566666644
No 398
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=82.70 E-value=2.3 Score=39.20 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=39.5
Q ss_pred cCcchHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC----C----CCeEEEeec-hHHHH
Q 018366 162 GNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----P----QIKAVNFDL-PHVVQ 231 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~ 231 (357)
.-|+..+.|....... .. +....+. .+.+..+++||+|+|.++..+++.. | .+++..++. |+..+
T Consensus 50 TApels~lFGella~~---~~-~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 50 TAPELSQLFGELLAEQ---FL-QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred echhHHHHHHHHHHHH---HH-HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 3456666666533221 11 2223333 3456789999999999988877653 4 456777776 44443
No 399
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=82.61 E-value=1.6 Score=41.02 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=52.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCC--CCCC--CCEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFD--SVPE--GDAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~p~--~D~i~~~~~ 261 (357)
+...|||||.|||.++...++...+ .++.++. .+|.+.+++ .++|+++.---.+ ..|. +|+++-..+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4568999999999999988888755 5778876 777777764 1456655432222 1222 255544333
Q ss_pred cccCChhHHHHHHHHHHHhC-CCC
Q 018366 262 LHCWDDDHCLRILKNCYKAI-PDN 284 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~L-kpg 284 (357)
.--+-.+-+..-++.+.+.| +||
T Consensus 145 dtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhhccccchhHHHHHHHhcccC
Confidence 22222232334455665544 455
No 400
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=82.60 E-value=7.2 Score=35.00 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=56.8
Q ss_pred ceEEEEcCC--cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEE-cCC-CCCCCCCCEEEeccccccCChhHH
Q 018366 196 ERLVDVGGG--FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG-GNM-FDSVPEGDAILMKWILHCWDDDHC 270 (357)
Q Consensus 196 ~~vLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~D~-~~~~p~~D~i~~~~~lh~~~~~~~ 270 (357)
.+|+=+|.| -|.++..+.+..+...+++.|. ....+.+.+.+ +.... .+. .......|+|+++- |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-v~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-VIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-cccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 467778877 4678888888888888899987 44444444321 22211 122 12333459988754 44667
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 018366 271 LRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 271 ~~~L~~~~~~LkpgG~l~i 289 (357)
.++++++...|+||..+.=
T Consensus 78 ~~~l~~l~~~l~~g~iv~D 96 (279)
T COG0287 78 EEVLKELAPHLKKGAIVTD 96 (279)
T ss_pred HHHHHHhcccCCCCCEEEe
Confidence 8999999999999765543
No 401
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=82.52 E-value=2.4 Score=38.21 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=65.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCC----C--CCceEEEcCCCCC----CCC-CCEEEe
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFDS----VPE-GDAILM 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~~----~p~-~D~i~~ 258 (357)
..+..+|||..++.|.=+..+++... ...++..|+ +.-+...+. . ..+.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45667899999999999999999887 456788887 443333322 1 3456665565432 112 266653
Q ss_pred ----c--cccccCCh-------hH-------HHHHHHHHHHhC----CCCCEEEEEeecc
Q 018366 259 ----K--WILHCWDD-------DH-------CLRILKNCYKAI----PDNGKVIVMNSIV 294 (357)
Q Consensus 259 ----~--~~lh~~~~-------~~-------~~~~L~~~~~~L----kpgG~l~i~e~~~ 294 (357)
+ .++..-++ ++ -.++|+++.+.+ ||||+++-..-.+
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 1 12222111 11 147899999999 9999999766543
No 402
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=82.24 E-value=3.8 Score=29.77 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=44.1
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
++....+..++..|.+..+.++.+|+..+++ ....+.+.|..|...|++....
T Consensus 21 ~l~~~~r~~il~~l~~~~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~~ 73 (110)
T COG0640 21 ALADPTRLEILSLLAEGGELTVGELAEALGL----SQSTVSHHLKVLREAGLVELRR 73 (110)
T ss_pred HhCCHHHHHHHHHHHhcCCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEEe
Confidence 4444567778888877337899999999999 8999999999999999999853
No 403
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=81.89 E-value=2 Score=36.42 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=35.5
Q ss_pred hhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|.+.|... .+.|++|+|+++|+ ..--.+|.|.+|++.|++..+
T Consensus 163 i~~~~~~~~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKEPDQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhCcCCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 44455522 28999999999999 888999999999999999964
No 404
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.79 E-value=11 Score=37.00 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=59.8
Q ss_pred CCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC--------------C--------
Q 018366 194 NVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD--------------S-------- 249 (357)
Q Consensus 194 ~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~--------------~-------- 249 (357)
++.+|+=+|||. |..+...++.. +..++++|. ++..+.+++.+ .++...|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG-A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG-AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC-CeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 578999999996 55666677665 457899998 77777776542 2322211110 1
Q ss_pred ----CCCCCEEEeccccccCChhHHHHH-HHHHHHhCCCCCEEEEEee
Q 018366 250 ----VPEGDAILMKWILHCWDDDHCLRI-LKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 ----~p~~D~i~~~~~lh~~~~~~~~~~-L~~~~~~LkpgG~l~i~e~ 292 (357)
....|+++..-.... .....+ .+...+.+||||+++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 012398887654322 212344 5999999999999887654
No 405
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=81.60 E-value=4.5 Score=31.39 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=46.0
Q ss_pred CCceEEEEcCCcch-HHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC---CC-CEEEeccccccCChh
Q 018366 194 NVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP---EG-DAILMKWILHCWDDD 268 (357)
Q Consensus 194 ~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p---~~-D~i~~~~~lh~~~~~ 268 (357)
+..+|++||-|.=. .+..|.+.. ..++..|+.+. .+. .++.++.-|+++|-. .+ |+|++.+ ++.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~--~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR--KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc--ccc--cCcceeeecccCCCHHHhcCCcEEEEeC-----CCh
Confidence 34599999998764 555555553 67888887332 222 678999999999543 23 9998876 345
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+...-+.++.+.. |.-++|....
T Consensus 82 El~~~il~lA~~v--~adlii~pL~ 104 (127)
T PF03686_consen 82 ELQPPILELAKKV--GADLIIRPLG 104 (127)
T ss_dssp TSHHHHHHHHHHH--T-EEEEE-BT
T ss_pred HHhHHHHHHHHHh--CCCEEEECCC
Confidence 5555666666643 5667775543
No 406
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.55 E-value=21 Score=27.18 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=55.1
Q ss_pred CCceEEEEcCCcch-HHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC---CC-CEEEeccccccCChh
Q 018366 194 NVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP---EG-DAILMKWILHCWDDD 268 (357)
Q Consensus 194 ~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p---~~-D~i~~~~~lh~~~~~ 268 (357)
...+|+++|-|.=. .+..|++.. ..++..|+.+- .++ ..++++..|+++|.- .+ |+|++.. +++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcC--CcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 45699999998664 445555543 66777786333 333 578999999998532 23 8888755 446
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+....+=++.++. |..++|.-.
T Consensus 82 El~~~ildva~aV--ga~l~I~pL 103 (129)
T COG1255 82 ELQSAILDVAKAV--GAPLYIKPL 103 (129)
T ss_pred HHHHHHHHHHHhh--CCCEEEEec
Confidence 6666666666655 345555433
No 407
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.44 E-value=4.3 Score=35.95 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-----CCCeEEEeec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL 226 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~ 226 (357)
+.+...++|+|||.|.++..+.... +...++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 4567799999999999999999988 5668899997
No 408
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=81.30 E-value=2.2 Score=40.98 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=41.4
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
|...|.+ ||.|+.||++.+++ .+..+++.|..| .|+|...++.....|++...
T Consensus 5 ~~~~L~~-g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~~~gr~~~Y~l~~~ 57 (442)
T PRK09775 5 LTTLLLQ-GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRFGKARATRYALLRP 57 (442)
T ss_pred HHHHHhc-CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEeccCceEEEEeccc
Confidence 4566776 69999999999999 899999999999 88888654333445766544
No 409
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=81.22 E-value=2.6 Score=40.21 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
.|.|.++|++++++ +++.++++|+.|...|++.+ .+++.|..
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~---~~~g~~~l 350 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRR---GERGQWVL 350 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEe---cCCCceEe
Confidence 48999999999999 99999999999999999985 33455654
No 410
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=81.09 E-value=1.9 Score=38.06 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=41.5
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+.-|.+.|.+.+..++.|||+.+++ .+.-++|-|..|...|++.+.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 6 RHDAIIELVKQQGYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34457888888778999999999999 899999999999999999863
No 411
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=81.03 E-value=1.6 Score=27.55 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV 88 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~ 88 (357)
.+..+...+.+ +.|..+||+.+|+ ++.-+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~--G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLRE--GWSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHH--T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHC--CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 34556666676 6899999999999 99999999987665553
No 412
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=80.92 E-value=2.4 Score=28.44 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=29.8
Q ss_pred CC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.. |..+||+.+++ ...-+++-|+.|.+.|++...
T Consensus 23 ~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 23 RLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp BE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred EeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 55 99999999999 899999999999999999975
No 413
>PRK10742 putative methyltransferase; Provisional
Probab=80.74 E-value=3.8 Score=35.93 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHhhcccCCCCc--eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHH
Q 018366 184 RILEHYEGFQNVE--RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ 231 (357)
Q Consensus 184 ~i~~~l~~~~~~~--~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 231 (357)
.+++.+. +++.. +|||+=+|.|.-+..++.. +.+++.++. |.+..
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaa 124 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAA 124 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 4666665 55555 8999999999999999988 556888887 44433
No 414
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=80.62 E-value=2.5 Score=29.27 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=40.0
Q ss_pred HHHHHHHHhChhH-----HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 36 MATQAAIQLGVFE-----IIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 36 ~~l~~a~~lglfd-----~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.++..+-+.|..+ .+.- +.|.++||..+|+ .+..+.+.|+.|...|++..
T Consensus 6 ~Ll~l~~~~~~~~~~~~~~~~~--~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~ 60 (76)
T PF13545_consen 6 FLLELAERFGRRQDGDGIRIPL--PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEV 60 (76)
T ss_dssp HHHHHHHHHEEEEETTEEEEEE--ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHCCCCCCCCceEEe--cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 3556666666641 1222 7999999999999 89999999999999999996
No 415
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=80.58 E-value=1.9 Score=37.08 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHH
Q 018366 34 LPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRL 82 (357)
Q Consensus 34 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~ 82 (357)
.-.+|..|++.|-||.=. .+|+.|||+.+|+ .+.-+...||.
T Consensus 160 Q~~vL~~A~~~GYFd~PR---~~~l~dLA~~lGI----Skst~~ehLRr 201 (215)
T COG3413 160 QLEVLRLAYKMGYFDYPR---RVSLKDLAKELGI----SKSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHcCCCCCCc---cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 446999999999999933 5899999999999 66666666664
No 416
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=80.56 E-value=3.4 Score=34.14 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=31.5
Q ss_pred CEEEeccccccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 DAILMKWILHCWDD----------DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 D~i~~~~~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|+++++||+++. ++..+++.+++++|+|+..++-....
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~ 101 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAM 101 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCC
Confidence 99999999999864 56678888888888888666655443
No 417
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=79.83 E-value=6.2 Score=27.24 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=35.3
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHH--hcCcceeeeccC-C-Ccceec
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLL--VSHRVLECSVSS-G-ERLYGL 102 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L--~~~g~l~~~~~~-~-~~~y~~ 102 (357)
|++.|...++.|+++|++++|| .+.-++..|--+ -..|+--..... + ...|++
T Consensus 15 li~mL~rp~GATi~ei~~atGW----q~HTvRgalsg~~kKklGl~i~s~k~~g~~r~YrI 71 (72)
T PF11994_consen 15 LIAMLRRPEGATIAEICEATGW----QPHTVRGALSGLLKKKLGLTITSEKVDGGGRRYRI 71 (72)
T ss_pred HHHHHcCCCCCCHHHHHHhhCC----chhhHHHHHHHHHHHhcCcEEEeeecCCCeeeEee
Confidence 5667777668999999999999 777776666555 455655443222 1 345654
No 418
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=79.69 E-value=2.2 Score=37.76 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=41.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|.+.|.+.|.+++.|||+.+++ .+.-++|=|+.|...|++.+.
T Consensus 6 R~~~Il~~L~~~~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r~ 52 (256)
T PRK10434 6 RQAAILEYLQKQGKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIRT 52 (256)
T ss_pred HHHHHHHHHHHcCCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 34557889998889999999999999 899999999999999999963
No 419
>PF13518 HTH_28: Helix-turn-helix domain
Probab=79.64 E-value=3.3 Score=26.17 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=31.1
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCccee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
+.....+ ..|..++|..+|+ ++..+.+|++.....|+-.
T Consensus 5 iv~~~~~--g~s~~~~a~~~gi----s~~tv~~w~~~y~~~G~~~ 43 (52)
T PF13518_consen 5 IVELYLE--GESVREIAREFGI----SRSTVYRWIKRYREGGIEG 43 (52)
T ss_pred HHHHHHc--CCCHHHHHHHHCC----CHhHHHHHHHHHHhcCHHH
Confidence 4444554 3499999999999 8999999999988877643
No 420
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=79.35 E-value=5.6 Score=37.93 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=59.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCC--eEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCC--CC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQI--KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVP--EG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p--~~-D~i~ 257 (357)
.+..+.|+|.|.|.-.-.+....++. .++.+|. ..|....... ..+.+...-+.+ +.+ .+ |+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 34678889988776554444444443 3677786 3444433221 112222112222 333 23 9999
Q ss_pred eccccccCChhH-HHHHHHHHH-HhCCCCCEEEEEeecc
Q 018366 258 MKWILHCWDDDH-CLRILKNCY-KAIPDNGKVIVMNSIV 294 (357)
Q Consensus 258 ~~~~lh~~~~~~-~~~~L~~~~-~~LkpgG~l~i~e~~~ 294 (357)
+++.||+.+... ...+.++.+ +..++|+++++++...
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999999986543 335555554 5678999999998653
No 421
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=79.31 E-value=3.8 Score=35.51 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=39.8
Q ss_pred ChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.||+.|.. .|-.+..+||+++|+ .+..+++=++.|++.|++...
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~r 231 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 231 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 48888888 478999999999999 888999999999999999963
No 422
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.27 E-value=13 Score=34.61 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=63.1
Q ss_pred ceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCC-C------CC--CCC-CEEEeccccc
Q 018366 196 ERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMF-D------SV--PEG-DAILMKWILH 263 (357)
Q Consensus 196 ~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~-~------~~--p~~-D~i~~~~~lh 263 (357)
.+|+=+|||+ |.++..+++.+.-.++++.|. +.-++.|++........-.-. . .. +.+ |+++=.--
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 3899999996 777788888888788899898 777888876322222111111 0 11 223 87765433
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
....+..+.++++|||++.++-.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 234788999999999999998776444
No 423
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=79.17 E-value=3.8 Score=31.84 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCce
Q 018366 271 LRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNL 350 (357)
Q Consensus 271 ~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 350 (357)
.++++++++.++|||.+.-.. +...+++-|.++||.+.+....+...
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys---------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYS---------------------------------SAGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES-----------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHHhCCCcEEEEee---------------------------------chHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 478999999999998776521 12347788999999987776665555
Q ss_pred eEEEEe
Q 018366 351 YIMEFF 356 (357)
Q Consensus 351 ~vie~~ 356 (357)
-.+.++
T Consensus 117 ~~~~a~ 122 (124)
T PF05430_consen 117 EMLRAV 122 (124)
T ss_dssp EEEEEE
T ss_pred hheEEE
Confidence 454443
No 424
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=78.63 E-value=31 Score=30.86 Aligned_cols=122 Identities=9% Similarity=0.037 Sum_probs=68.9
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-C-C--CCC-CEEEeccccccCChh-
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-S-V--PEG-DAILMKWILHCWDDD- 268 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~-~--p~~-D~i~~~~~lh~~~~~- 268 (357)
+++|+-||.|.+...+.+..-+ .+..+|. +..++..+.. +. .+..+|+.+ . . ... |+++..--...++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~-~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE-IVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE-EEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 6899999999998888876422 3455676 5555544432 22 255677766 2 1 223 999876655544321
Q ss_pred -------HHHHHHHHHH---HhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 269 -------HCLRILKNCY---KAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 269 -------~~~~~L~~~~---~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
....++..+. +.++| +++++|.+..-- . ........++.+.|++.||
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~--------------------~-~~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLL--------------------T-HDNGNTLKVILNTLEELGY 136 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchh--------------------c-cCchHHHHHHHHHHHhCCc
Confidence 1112333333 33444 466777654210 0 0111246778888899998
Q ss_pred ceeEE
Q 018366 339 KHINF 343 (357)
Q Consensus 339 ~~~~~ 343 (357)
.+...
T Consensus 137 ~~~~~ 141 (275)
T cd00315 137 NVYWK 141 (275)
T ss_pred EEEEE
Confidence 86543
No 425
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=78.20 E-value=3.5 Score=36.74 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=53.6
Q ss_pred hHHHHhCCC-CCCceEEEcCCCCC---CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 227 PHVVQDAPS-YAGVEHVGGNMFDS---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 227 ~~~~~~a~~-~~~v~~~~~D~~~~---~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+.+.+.++. ..||.++.+|+.+- -|.+ |-+++..+=.+++|.+...++.++.+.+.||.++++-...
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEeccc
Confidence 455555544 36799999998772 2333 9999999999999999999999999999999999986553
No 426
>PRK12423 LexA repressor; Provisional
Probab=78.17 E-value=3.6 Score=34.97 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=30.6
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+.|..|||+++|+. .+..+++.|+.|+..|+|+..
T Consensus 25 ~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 25 PPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEVV 59 (202)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEec
Confidence 67999999999961 566889999999999999974
No 427
>PRK09954 putative kinase; Provisional
Probab=78.13 E-value=3.4 Score=38.62 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=39.9
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCccee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
+..|+..|.++++.|..+||+.+++ .+..+.+.++-|...|++.
T Consensus 5 ~~~il~~l~~~~~~s~~~la~~l~~----s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRNPLIQQNEIADILQI----SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcC
Confidence 3457888888889999999999999 8999999999999999996
No 428
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=77.96 E-value=3.5 Score=30.18 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=34.4
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHh
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLV 84 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~ 84 (357)
.-..+.+.||+..|-+ ++.|-.|||+.+|+ ....+.|+=+.|.
T Consensus 38 ~~~l~~R~~i~~~Ll~-~~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 38 REDLGDRIRIVNELLN-GNMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 3345779999998887 48999999999999 7777777666544
No 429
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=77.93 E-value=2.9 Score=37.36 Aligned_cols=47 Identities=9% Similarity=0.181 Sum_probs=41.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
....|.+.|.+.+..|+.|||+.+++ .++-++|=|..|...|++.+.
T Consensus 18 R~~~Il~~L~~~~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r~ 64 (269)
T PRK09802 18 RREQIIQRLRQQGSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVRA 64 (269)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEEE
Confidence 44567888888779999999999999 899999999999999999964
No 430
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=77.40 E-value=4.3 Score=35.54 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=39.4
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
..|.+.|.+.+..+.+|||+.+++ .+.-++|.|..|...|.+.+
T Consensus 7 ~~Il~~l~~~~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r 50 (240)
T PRK10411 7 QAIVDLLLNHTSLTTEALAEQLNV----SKETIRRDLNELQTQGKILR 50 (240)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 447778887779999999999999 89999999999999999985
No 431
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=76.94 E-value=3.5 Score=36.35 Aligned_cols=27 Identities=19% Similarity=0.440 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
....+++++.+.++.||.++++|.-.+
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~ 198 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYP 198 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCC
Confidence 567899999999988899999998763
No 432
>PTZ00357 methyltransferase; Provisional
Probab=76.90 E-value=11 Score=37.98 Aligned_cols=131 Identities=13% Similarity=0.120 Sum_probs=76.5
Q ss_pred ChhhhcccCcchHHHHHHHHhhcchhhHH------------HH------HhhcccC---CCCceEEEEcCCcchHHHHHH
Q 018366 155 HIFEYASGNPGFNETYHKAMFNHSTIAME------------RI------LEHYEGF---QNVERLVDVGGGFGVTLSMIT 213 (357)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i------~~~l~~~---~~~~~vLDiG~G~G~~~~~l~ 213 (357)
..|+.|++|+-....|.+++...-..... ++ ++..+.- .....|+-+|+|-|-+....+
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 45788889988888888876543321110 00 0111110 112468999999998877666
Q ss_pred hhCC----CCeEEEeec-hHHH--HhCC--C-C----------CCceEEEcCCCC-CCC-------------CCCEEEec
Q 018366 214 SKYP----QIKAVNFDL-PHVV--QDAP--S-Y----------AGVEHVGGNMFD-SVP-------------EGDAILMK 259 (357)
Q Consensus 214 ~~~p----~~~~~~~D~-~~~~--~~a~--~-~----------~~v~~~~~D~~~-~~p-------------~~D~i~~~ 259 (357)
+... .+++..++- |+.+ -..+ . . ++|+++..|+.+ ..+ ..|+|+.-
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh
Confidence 5543 455667764 3311 1111 1 0 248999999988 222 13888754
Q ss_pred cccccCCh-hHHHHHHHHHHHhCCC----CCE
Q 018366 260 WILHCWDD-DHCLRILKNCYKAIPD----NGK 286 (357)
Q Consensus 260 ~~lh~~~~-~~~~~~L~~~~~~Lkp----gG~ 286 (357)
. |=.|.| |-.++.|.-+.+.||+ +|.
T Consensus 800 L-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 800 L-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred h-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 3 333443 4456888888888887 665
No 433
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=76.07 E-value=3.2 Score=33.84 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
+|+|++||++++|+ ....++.-++-|...+++.+..
T Consensus 40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhhh
Confidence 49999999999999 8889999999999999999754
No 434
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=76.05 E-value=6.7 Score=27.07 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=38.3
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..|...++.. ..|.++|-+.+|+ +...+...|.-|...|++.+.
T Consensus 8 ~~IL~~ls~~-c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 8 QKILIILSKR-CCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHHHhc-cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 3456677775 8999999999999 899999999999999999963
No 435
>PF14502 HTH_41: Helix-turn-helix domain
Probab=75.87 E-value=7 Score=24.60 Aligned_cols=42 Identities=7% Similarity=0.117 Sum_probs=34.2
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcce
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLY 100 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y 100 (357)
-.|++|+++++++ ..-.+..-|..|...|.+..+.+...|.|
T Consensus 6 i~tI~e~~~~~~v----s~GtiQ~Alk~Le~~gaI~Le~rGh~GTf 47 (48)
T PF14502_consen 6 IPTISEYSEKFGV----SRGTIQNALKFLEENGAIKLESRGHLGTF 47 (48)
T ss_pred cCCHHHHHHHhCc----chhHHHHHHHHHHHCCcEEeeecCcCccc
Confidence 3699999999999 78889999999999999998654334443
No 436
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=75.51 E-value=4.7 Score=37.00 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=42.5
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
..|.+.|.+..+.+..+||+++++ .+..+.+.++.|...|++-... .+..|.+.+.
T Consensus 7 ~~il~~L~~~~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i~~~--~~~Gy~L~~~ 62 (319)
T PRK11886 7 LQLLSLLADGDFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDIFSV--KGKGYRLAEP 62 (319)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceEEe--cCCeEEecCc
Confidence 456677777557999999999999 8999999999999999944321 2345765443
No 437
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.42 E-value=47 Score=28.57 Aligned_cols=77 Identities=9% Similarity=0.087 Sum_probs=48.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCC--CeEEEeec--hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL--PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDD 268 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~--~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~ 268 (357)
+....||-.||..|.++.++++.+.+ ..+...-. +.|.+.+.+ .++.....|+. +++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV~------------------~~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDVS------------------KPE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEeccC------------------ChH
Confidence 34568999999999999999988754 23333322 334333321 23444445442 446
Q ss_pred HHHHHHHHHHHhCCCCCEEEEE
Q 018366 269 HCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++..+...+++- |.|.|=+.
T Consensus 66 ~V~~v~~evr~~--~~Gkld~L 85 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--PDGKLDLL 85 (289)
T ss_pred HHHHHHHHHhhC--CCCceEEE
Confidence 778888888775 77876543
No 438
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=74.58 E-value=16 Score=32.62 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=48.4
Q ss_pred eEEEEcCCc--chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHH
Q 018366 197 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRI 273 (357)
Q Consensus 197 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~ 273 (357)
+|.=||+|. |.++..+.+. +..++++|. ++..+.+.+...+.....+. +...+.|+|++.- +.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 466678774 4455666554 457888887 55555554332222111111 1122348888753 55667788
Q ss_pred HHHHHHhCCCCCEE
Q 018366 274 LKNCYKAIPDNGKV 287 (357)
Q Consensus 274 L~~~~~~LkpgG~l 287 (357)
++++...++|+..+
T Consensus 74 ~~~l~~~l~~~~ii 87 (279)
T PRK07417 74 SEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHhCCCCcEE
Confidence 99999888887544
No 439
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=74.14 E-value=4.1 Score=33.41 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=39.0
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
-.|..+||+.+++ ...-+.|.+..|...+++.+. ..+.|.++|.-
T Consensus 75 ~~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k~---~~G~Y~iNP~~ 119 (165)
T PF05732_consen 75 VATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKKI---RNGAYMINPNF 119 (165)
T ss_pred EeeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEEc---cCCeEEECcHH
Confidence 4699999999999 888999999999999999963 36788887763
No 440
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=74.05 E-value=5 Score=33.15 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=39.4
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
-|++.|.+.|-.|=++||..+|+ ...-++++|..|...|++...
T Consensus 22 ~v~~~l~~kge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 22 LVVDALLEKGELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred HHHHHHHhcCCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 37788888557999999999999 889999999999999999964
No 441
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=74.03 E-value=4.3 Score=32.59 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=36.3
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCccee
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
-|+|+|-..|.+|-++||+.+|+ +...++++|..|...+++.
T Consensus 5 ~v~d~L~~~~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~~ 46 (147)
T smart00531 5 LVLDALMRNGCVTEEDLAELLGI----KQKQLRKILYLLYDEKLIK 46 (147)
T ss_pred eehHHHHhcCCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcch
Confidence 47888887779999999999999 8999999999999955543
No 442
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=73.99 E-value=2.6 Score=28.72 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
-.+-.|++.|...|+.++-.+|...++. .+..-+.+.|..|...|.|..+. ..+-.|+++
T Consensus 4 ~~ee~Il~~L~~~g~~~a~~ia~~~~L~--~~kk~VN~~LY~L~k~g~v~k~~-~~PP~W~l~ 63 (66)
T PF02295_consen 4 DLEEKILDFLKELGGSTATAIAKALGLS--VPKKEVNRVLYRLEKQGKVCKEG-GTPPKWSLT 63 (66)
T ss_dssp HHHHHHHHHHHHHTSSEEEHHHHHHHHT--S-HHHHHHHHHHHHHTTSEEEEC-SSSTEEEE-
T ss_pred hHHHHHHHHHHhcCCccHHHHHHHhCcc--hhHHHHHHHHHHHHHCCCEeeCC-CCCCceEec
Confidence 3566788888887667777777777761 04678999999999999999752 234556654
No 443
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=73.78 E-value=3.8 Score=30.50 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCccee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
++++++|++++++ +...++..++.|+..|.|-
T Consensus 65 Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IY 96 (102)
T PF08784_consen 65 GVHVDEIAQQLGM----SENEVRKALDFLSNEGHIY 96 (102)
T ss_dssp TEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEE
T ss_pred cccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEe
Confidence 7999999999999 8999999999999999886
No 444
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=73.76 E-value=7.8 Score=30.38 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=37.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHh----CcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|+-|...|=+.|+.|+.+|.+.+ ++ .+.-+..+|+-|...|+|...
T Consensus 5 ~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~----~~tTv~T~L~rL~~KG~v~~~ 55 (130)
T TIGR02698 5 AEWEVMRVVWTLGETTSRDIIRILAEKKDW----SDSTIKTLLGRLVDKGCLTTE 55 (130)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhccCC----cHHHHHHHHHHHHHCCceeee
Confidence 455667777555689999977776 45 677899999999999999964
No 445
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=73.44 E-value=5.8 Score=36.81 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=33.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeech
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP 227 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~ 227 (357)
++++.+..+.+...|+|+|.|.|.+++-+.-.+ ++.+.++|-.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegs 185 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGS 185 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccc
Confidence 444444446678899999999999999887766 6788888863
No 446
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.36 E-value=30 Score=31.65 Aligned_cols=96 Identities=13% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCC--ceEEEc-----CCCC----CCCC-C-CEE
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAG--VEHVGG-----NMFD----SVPE-G-DAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--v~~~~~-----D~~~----~~p~-~-D~i 256 (357)
.+...+||-+|+|. |..+...++.+--.++++.|+ +.-++.|++..- +..... ++.+ -... . |+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 66778999999995 788888888887778899998 778888876311 111111 1111 0111 1 665
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
+-...+ ...++....++++||.++++....+
T Consensus 247 ~dCsG~--------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGA--------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCc--------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 544433 2456777889999999888876543
No 447
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=72.29 E-value=4.7 Score=35.66 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=41.6
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.-.|++.|.+.|.++++|||+.+++ .+.-++|=|+.|...|++.+.
T Consensus 7 ~~~Il~~l~~~g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R~ 52 (253)
T COG1349 7 HQKILELLKEKGKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLRV 52 (253)
T ss_pred HHHHHHHHHHcCcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEEE
Confidence 3457888999889999999999999 899999999999999999964
No 448
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=71.06 E-value=7 Score=32.34 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=41.4
Q ss_pred HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++..|+|.|.+.| +.|+-+||+++|+ +..-+.|-|..|-..|.|..+
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i----~k~~vNr~LY~L~~~~~v~~~ 52 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGI----SKHEANRCLYRLLESDAVSCE 52 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCc----cHHHHHHHHHHHhhcCcEecC
Confidence 5667899999987 7999999999999 788899999999999988754
No 449
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=70.85 E-value=12 Score=33.44 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCe----EEEeechHHHHhCCCCCCceEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIK----AVNFDLPHVVQDAPSYAGVEHV 242 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~~v~~~ 242 (357)
.++..||-+|++.|.....|.+.+|+.. .+.+|..+-....++..+|+++
T Consensus 57 ~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~ 110 (294)
T PF01358_consen 57 DGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLI 110 (294)
T ss_dssp TT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEE
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEee
Confidence 3457999999999999999999998866 8999963333333333344444
No 450
>PRK00215 LexA repressor; Validated
Probab=70.69 E-value=10 Score=32.21 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+.|..|||+++|+. ++..+.++|+.|+..|++...
T Consensus 23 ~~s~~ela~~~~~~---~~~tv~~~l~~L~~~g~i~~~ 57 (205)
T PRK00215 23 PPSRREIADALGLR---SPSAVHEHLKALERKGFIRRD 57 (205)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEeC
Confidence 78999999999982 567899999999999999964
No 451
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=70.67 E-value=21 Score=26.81 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=44.2
Q ss_pred CCcchHHHHHHhhC--CCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCC--C---C--CCCEEEeccccccCChhHHHH
Q 018366 203 GGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDS--V---P--EGDAILMKWILHCWDDDHCLR 272 (357)
Q Consensus 203 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~--~---p--~~D~i~~~~~lh~~~~~~~~~ 272 (357)
||.|.++..+++.+ .+..++++|. ++.++.+++.. +.++.||..++ + . ..|.+++..- +++....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 34455665555543 2346888887 66666665433 88999998872 1 1 2266654321 3333333
Q ss_pred HHHHHHHhCCCCCEEEE
Q 018366 273 ILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 273 ~L~~~~~~LkpgG~l~i 289 (357)
+. ...+.+.|..++++
T Consensus 79 ~~-~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IA-LLARELNPDIRIIA 94 (116)
T ss_dssp HH-HHHHHHTTTSEEEE
T ss_pred HH-HHHHHHCCCCeEEE
Confidence 33 34455566677665
No 452
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=70.58 E-value=21 Score=33.55 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=56.6
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHH-----hCCCCCCc---eEEEcCCCCCCCCC-CEEEeccccccCCh
Q 018366 197 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ-----DAPSYAGV---EHVGGNMFDSVPEG-DAILMKWILHCWDD 267 (357)
Q Consensus 197 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~-----~a~~~~~v---~~~~~D~~~~~p~~-D~i~~~~~lh~~~~ 267 (357)
+|+-++-..|.+++.++...|. ...|. -+.+ .++. .++ .+...+..+++|.+ |+|++..-= +-
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~---~~~ds-~~~~~~~~~n~~~-n~~~~~~~~~~~~~~~~~~~~d~vl~~~PK---~~ 118 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY---SIGDS-YISELATRENLRL-NGIDESSVKFLDSTADYPQQPGVVLIKVPK---TL 118 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC---eeehH-HHHHHHHHHHHHH-cCCCcccceeecccccccCCCCEEEEEeCC---CH
Confidence 7999999999999999976553 33552 2222 1211 111 12223444466766 888764321 12
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
......|..+.+.|+||+.+++.+..
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 45678899999999999998776543
No 453
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=70.42 E-value=6 Score=30.36 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=44.1
Q ss_pred HHHHhChhHHHHhCC-CCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCcceeeeccC-CCcceecc
Q 018366 40 AAIQLGVFEIIAKAG-KLSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGLT 103 (357)
Q Consensus 40 ~a~~lglfd~L~~~g-~~t~~~la~~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~t 103 (357)
+..+.-|++.|.+.+ +.|+++|.+.+.-. ...+..-+.|.|+.|+..|++.+.... +...|...
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~ 73 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGDGESRYELS 73 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEES
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeec
Confidence 455667788888743 89999999998641 011444689999999999999986433 12345543
No 454
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=70.30 E-value=7.3 Score=32.55 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=40.1
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
..|..++|+.++. .+....|||..|...|++++....++.....|..+..++
T Consensus 19 ~~t~~ela~~l~~----S~qta~R~l~~le~~~~I~R~~~~~Gq~i~iTekG~~~L 70 (214)
T COG1339 19 KVTSSELAKRLGV----SSQTAARKLKELEDEGYITRTISKRGQLITITEKGIDLL 70 (214)
T ss_pred cccHHHHHHHhCc----CcHHHHHHHHhhccCCcEEEEecCCCcEEEehHhHHHHH
Confidence 5899999999999 888999999999999999975433344555555554444
No 455
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=69.66 E-value=7.3 Score=38.47 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=37.3
Q ss_pred chhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeechHH
Q 018366 178 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDLPHV 229 (357)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~~~~ 229 (357)
+.+.+-.+-..+.-+.+...|||+||..|.++.-.++..|-. -++++|+.++
T Consensus 28 saFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 28 SAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred HHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 333333455555535677899999999999999999988843 4688897443
No 456
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=68.66 E-value=11 Score=31.68 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=35.5
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+.++..+.-.+|+|..+|++..|+ +. ..+++.|...|++.+.
T Consensus 93 LEtLaiIay~qPiTr~eI~~irGv----~~---~~ii~~L~~~gLI~e~ 134 (188)
T PRK00135 93 LEVLAIIAYKQPITRIEIDEIRGV----NS---DGALQTLLAKGLIKEV 134 (188)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC----CH---HHHHHHHHHCCCeEEc
Confidence 346777777779999999999999 54 7889999999999864
No 457
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=68.37 E-value=5.1 Score=24.22 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=19.4
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHH
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLL 83 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L 83 (357)
+.|+++||..+|+ ++..+.|..+..
T Consensus 8 ~~~l~~iA~~~g~----S~~~f~r~Fk~~ 32 (42)
T PF00165_consen 8 KLTLEDIAEQAGF----SPSYFSRLFKKE 32 (42)
T ss_dssp S--HHHHHHHHTS-----HHHHHHHHHHH
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHH
Confidence 7999999999999 899998887753
No 458
>PRK01381 Trp operon repressor; Provisional
Probab=68.14 E-value=8.1 Score=28.55 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=30.4
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHH
Q 018366 38 TQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRL 82 (357)
Q Consensus 38 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~ 82 (357)
-..+.+++|+..|.+ |+.|-.|||+.+|+ .-..+.|--++
T Consensus 39 ~al~~R~~I~~~L~~-g~~sQREIa~~lGv----SiaTITRgsn~ 78 (99)
T PRK01381 39 EALGTRVRIVEELLR-GELSQREIKQELGV----GIATITRGSNS 78 (99)
T ss_pred HHHHHHHHHHHHHHc-CCcCHHHHHHHhCC----ceeeehhhHHH
Confidence 345789999999998 58999999999999 44444443333
No 459
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=68.06 E-value=9.1 Score=30.97 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
+--..+++-+++.|.|||+|.| |.+.+. . ...++. -|...-..-+-..|..+||+.++-+..+
T Consensus 63 ~~E~~l~~~~~~~l~pg~~lfV-eY~~D~------e-------T~~~L~---~G~pp~~TrLG~~Ll~~GFtwfKdWYfP 125 (170)
T PF06557_consen 63 PLEDELYKLFSRYLEPGGRLFV-EYVEDR------E-------TRRQLQ---RGVPPAETRLGFSLLKAGFTWFKDWYFP 125 (170)
T ss_dssp HHHHHHHHHHHTT----SEEEE-E-TT-H------H-------HHHHHH---TT--GGGSHHHHHHHTTT--EEEEEE--
T ss_pred hHHHHHHHHHHHHhhhcCeEEE-EEecCH------H-------HHHHHH---cCCCcccchhHHHHHhCCcEEEeeeecc
Confidence 3345889999999999999988 433221 0 011111 2222334457788899999999987766
No 460
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=67.80 E-value=15 Score=33.33 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=58.8
Q ss_pred CceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC---CCCCCCEEEeccccccCCh
Q 018366 195 VERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD---SVPEGDAILMKWILHCWDD 267 (357)
Q Consensus 195 ~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~---~~p~~D~i~~~~~lh~~~~ 267 (357)
+.+|.-||+|. |..+..++--. +..++.+|+ ..-+.+.... .|+...-.+... .....|+++..-.+-.-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga-- 244 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA-- 244 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC--
Confidence 46788899984 66777766543 567888887 4444443332 456655544333 34455988876555433
Q ss_pred hHHHHHHHHHHHhCCCCCEEEE
Q 018366 268 DHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i 289 (357)
....-+.++..+.||||+.++=
T Consensus 245 kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEE
Confidence 3345678888999999998763
No 461
>PF13814 Replic_Relax: Replication-relaxation
Probab=67.49 E-value=12 Score=31.18 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=45.4
Q ss_pred HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC-------CCcceecchhchhhhc
Q 018366 49 IIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS-------GERLYGLTPVSKYFVS 111 (357)
Q Consensus 49 ~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-------~~~~y~~t~~~~~l~~ 111 (357)
.|.+...+|.++|+..+.. +...+..+.+.|.-|...|+|...... ....|.+|+.+..++.
T Consensus 3 ~L~~~r~lt~~Qi~~l~~~-~~~~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l~ 71 (191)
T PF13814_consen 3 LLARHRFLTTDQIARLLFP-SSKSERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLLA 71 (191)
T ss_pred hHHHhcCcCHHHHHHHHcC-CCcchHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHHH
Confidence 4555568999999999998 221223799999999999999976431 2346888888776664
No 462
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=67.38 E-value=8.2 Score=29.94 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=35.4
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCccee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYG 101 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~ 101 (357)
=.|+.++|..+++ ++.-+.|-.+.|+..|++... .+.|.|-
T Consensus 35 LPSvRelA~~~~V----NpnTv~raY~eLE~eG~i~t~--rg~G~fV 75 (125)
T COG1725 35 LPSVRELAKDLGV----NPNTVQRAYQELEREGIVETK--RGKGTFV 75 (125)
T ss_pred CCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe--cCeeEEE
Confidence 3599999999999 999999999999999999974 3456664
No 463
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=67.36 E-value=5.2 Score=33.51 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=40.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
-+.-|.+.|.+.|..++.+||+.+++ .+.-++|=|+.|...|.+.+
T Consensus 8 R~~~Il~~l~~~~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r 53 (185)
T PRK04424 8 RQKALQELIEENPFITDEELAEKFGV----SIQTIRLDRMELGIPELRER 53 (185)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHH
Confidence 34457788888889999999999999 89999999999999999995
No 464
>COG3398 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.29 E-value=12 Score=32.00 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=44.1
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 38 TQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 38 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+..-.+.+++..+...++.++.|+.+-+++ +..-++-+||.|.+.+++...
T Consensus 98 ~~ns~R~~Iy~~i~~nPG~~lsEl~~nl~i----~R~TlRyhlriLe~~~li~a~ 148 (240)
T COG3398 98 FLNSKRDGIYNYIKPNPGFSLSELRANLYI----NRSTLRYHLRILESNPLIEAG 148 (240)
T ss_pred HhhhhHHHHHHHhccCCCccHHHHHHhcCC----ChHHHHHHHHHHHhCcchhhh
Confidence 334456778889998888999999999999 899999999999999999953
No 465
>PRK13239 alkylmercury lyase; Provisional
Probab=67.23 E-value=6.5 Score=33.39 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.0
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHH
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLL 83 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L 83 (357)
-.-|+..|.++.|.|+.+||+.+|+ +.+.+++.|+.|
T Consensus 24 ~~~llr~la~G~pvt~~~lA~~~~~----~~~~v~~~L~~l 60 (206)
T PRK13239 24 LVPLLRLLAKGRPVSVTTLAAALGW----PVEEVEAVLEAM 60 (206)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHhC
Confidence 3446777887569999999999999 777777766654
No 466
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=66.89 E-value=11 Score=33.76 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=37.6
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
..++++||++++- +....-++.-|+.|+.+|++.+ +++|.|..|..+
T Consensus 137 ~~~~~~ia~~l~p--~is~~ev~~sL~~L~~~glikk---~~~g~y~~t~~~ 183 (271)
T TIGR02147 137 ADDPEELAKRCFP--KISAEQVKESLDLLERLGLIKK---NEDGFYKQTDKA 183 (271)
T ss_pred CCCHHHHHHHhCC--CCCHHHHHHHHHHHHHCCCeeE---CCCCcEEeecce
Confidence 3489999999992 1167789999999999999996 456889887664
No 467
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=66.39 E-value=8.2 Score=32.04 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=33.9
Q ss_pred CCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCCccee
Q 018366 56 LSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYG 101 (357)
Q Consensus 56 ~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~ 101 (357)
.|-.+|+..+ |+ .+.-++|.+..|+..|+|......++.+|.
T Consensus 71 pSN~~La~r~~G~----s~~tlrR~l~~LveaGLI~rrDS~NgkRy~ 113 (177)
T PF03428_consen 71 PSNAQLAERLNGM----SERTLRRHLARLVEAGLIVRRDSPNGKRYA 113 (177)
T ss_pred cCHHHHHHHHcCC----CHHHHHHHHHHHHHCCCeeeccCCCCCccC
Confidence 5779999999 99 899999999999999999974222334453
No 468
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=65.79 E-value=8.2 Score=23.83 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=19.8
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHH
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLR 81 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~ 81 (357)
++..+.+ +.|+.+||+.+|+ ...-+.|+|+
T Consensus 14 i~~l~~~--G~si~~IA~~~gv----sr~TvyR~l~ 43 (45)
T PF02796_consen 14 IKELYAE--GMSIAEIAKQFGV----SRSTVYRYLN 43 (45)
T ss_dssp HHHHHHT--T--HHHHHHHTTS-----HHHHHHHHC
T ss_pred HHHHHHC--CCCHHHHHHHHCc----CHHHHHHHHh
Confidence 4455555 4999999999999 7777777653
No 469
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=65.77 E-value=25 Score=28.14 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=50.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-----hHHHHhCCCCCCceEEEcCCCCCCCC----C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFDSVPE----G 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~p~----~ 253 (357)
..++....+.+ .-|+|+|=|+|..=.++.+.+|+-.+.++|. |+... +.=.++.||+.+..|. +
T Consensus 19 ~~a~~~v~~~~--G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P-----~~~~~ilGdi~~tl~~~~~~g 91 (160)
T PF12692_consen 19 NWAAAQVAGLP--GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTP-----PEEDLILGDIRETLPALARFG 91 (160)
T ss_dssp HHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG--------GGGEEES-HHHHHHHHHHH-
T ss_pred HHHHHHhcCCC--CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCC-----chHheeeccHHHHhHHHHhcC
Confidence 34455555333 5799999999999999999999999999995 11111 1235677777662221 1
Q ss_pred -CEEEeccccccCChhHHHH---HH-HHHHHhCCCCCEEEEEeecc
Q 018366 254 -DAILMKWILHCWDDDHCLR---IL-KNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~---~L-~~~~~~LkpgG~l~i~e~~~ 294 (357)
.+.+...=+-.-..+.-.. .| .-+..+|.|||.++.-.+..
T Consensus 92 ~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 92 AGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred CceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 3333222111111121112 22 23446789999888755543
No 470
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=65.77 E-value=11 Score=29.18 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
.|.|.++||..++- +...++.-|..|...|+++. .+++.|.++..
T Consensus 52 ipy~~e~LA~~~~~----~~~~V~~AL~~f~k~glIe~---~ed~~i~i~~~ 96 (121)
T PF09681_consen 52 IPYTAEMLALEFDR----PVDTVRLALAVFQKLGLIEI---DEDGVIYIPNW 96 (121)
T ss_pred CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---ecCCeEEeecH
Confidence 39999999999998 89999999999999999996 34677766554
No 471
>PRK08507 prephenate dehydrogenase; Validated
Probab=65.33 E-value=27 Score=31.14 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=48.0
Q ss_pred eEEEEcCCc--chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHH
Q 018366 197 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRI 273 (357)
Q Consensus 197 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~ 273 (357)
+|.=||+|. |.++..+.+......++++|. ++..+.+.+.+-+.. ..+.. +..+.|+|++.- ++....++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~~-~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSFE-ELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCHH-HHhcCCEEEEeC-----cHHHHHHH
Confidence 466778775 456666665544456788887 444444433221111 11211 122248887743 56777788
Q ss_pred HHHHHHhCCCCCEEE
Q 018366 274 LKNCYKAIPDNGKVI 288 (357)
Q Consensus 274 L~~~~~~LkpgG~l~ 288 (357)
++++.. ++|+..++
T Consensus 75 ~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 75 LPKLLD-IKENTTII 88 (275)
T ss_pred HHHHhc-cCCCCEEE
Confidence 888888 88876444
No 472
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=65.16 E-value=23 Score=28.60 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHhC-------hhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 31 GVVLPMATQAAIQLG-------VFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 31 ~~~~~~~l~~a~~lg-------lfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
+-|...++.++.+.+ |+-.+.-.+ |.++.+|+..++.+ +-..+..-|+-|...|+++.-.....-.|..
T Consensus 66 ~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e---Dth~itYslrKL~k~gLit~t~~gkevTy~v 142 (199)
T COG5631 66 GRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE---DTHNITYSLRKLLKGGLITRTGSGKEVTYEV 142 (199)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc---cchhHHHHHHHHHhccceecCCCCceEEEEE
Confidence 346666666665555 223333323 89999999999984 6678888899999999999532122346888
Q ss_pred chhchhhh
Q 018366 103 TPVSKYFV 110 (357)
Q Consensus 103 t~~~~~l~ 110 (357)
|+.+..-+
T Consensus 143 Ta~G~~ac 150 (199)
T COG5631 143 TALGHRAC 150 (199)
T ss_pred ecchHHHH
Confidence 88776444
No 473
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=64.45 E-value=8.7 Score=27.61 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
-+|+..||+++++ +-...++.|+.|+..|++..+
T Consensus 41 ~ITps~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 41 IVTPYTLASKYGI----KISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred EEcHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999 888999999999999999865
No 474
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=64.37 E-value=11 Score=33.88 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=46.0
Q ss_pred CceEEEcCCCCCCCC-----C--CEEEe-ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh
Q 018366 238 GVEHVGGNMFDSVPE-----G--DAILM-KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309 (357)
Q Consensus 238 ~v~~~~~D~~~~~p~-----~--D~i~~-~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~ 309 (357)
+|.|++.|....++. + |+|++ .+..|.++++ +.++++|+|.|++ |... +...
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaK-----------fmvd 260 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAK-----------FMVD 260 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-Ecch-----------hhee
Confidence 467777776654431 2 88765 4566666543 6668899988777 4321 0000
Q ss_pred hhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 310 LDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 310 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
+.--.... -.+.+.+++++|||+.+..
T Consensus 261 LrKEq~~~-------F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 261 LRKEQLQE-------FVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred CCHHHHHH-------HHHHHHHHHHHCCCccccc
Confidence 11011111 2577889999999997643
No 475
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=64.08 E-value=12 Score=24.43 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=27.2
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
-.++..||++.|+ ...-+-.-||-|++.|+++.
T Consensus 4 ~lvas~iAd~~Gi----TRSvIVNALRKleSaGvIes 36 (61)
T PF08222_consen 4 RLVASKIADRVGI----TRSVIVNALRKLESAGVIES 36 (61)
T ss_dssp EE-HHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred eehHHHHHHHhCc----cHHHHHHHHHHHHhcCceee
Confidence 4688999999999 78888889999999999995
No 476
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.74 E-value=20 Score=25.14 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
..++.+|-+++|+ +.+-+...+.+|-..|++....+
T Consensus 22 ~~nVP~lm~~TGw----PRRT~QDvikAlpglgi~l~FvQ 57 (95)
T COG4519 22 TANVPELMAATGW----PRRTAQDVIKALPGLGIVLEFVQ 57 (95)
T ss_pred cCChHHHHHHcCC----chhHHHHHHHhCcCCCeEEEeee
Confidence 6899999999999 88899999999999999876543
No 477
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=63.09 E-value=7.5 Score=27.02 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=29.0
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCccee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
..|..|||+.+|+ ++..++.++..+...|.+.
T Consensus 32 GlS~kEIAe~LGI----S~~TVk~~l~~~~~~~~~~ 63 (73)
T TIGR03879 32 GKTASEIAEELGR----TEQTVRNHLKGETKAGGLV 63 (73)
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhcCcccchHH
Confidence 6899999999999 8999999999888888776
No 478
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=62.92 E-value=36 Score=31.35 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCCceEEEEcCCc-chHHHHHHhh-CCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhH
Q 018366 193 QNVERLVDVGGGF-GVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDH 269 (357)
Q Consensus 193 ~~~~~vLDiG~G~-G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~ 269 (357)
.+..+||-+|||. |..+..++++ ....++++.|. ++-.+.+++.... ....+..+.. ..|+|+=.- ....
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~~~~~-g~d~viD~~-----G~~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDIPEDL-AVDHAFECV-----GGRG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhhhhcc-CCcEEEECC-----CCCc
Confidence 4567899899763 4556666765 44557777776 4444544432111 1111111110 127765321 1011
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
....+....+.|+|||+++++-.
T Consensus 235 ~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcCCcEEEEEee
Confidence 23568888899999999998764
No 479
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=62.90 E-value=34 Score=24.81 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=37.8
Q ss_pred hhHHHHhCCCCCHHHHHHHhCc--CCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCC
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNK 113 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~ 113 (357)
|.+.+.+.-+.|-++....+.- ..+.-...+.=-+..|...|+|+. ...|.|.+|+.+..++..+
T Consensus 25 i~~~v~~~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~---~~rG~~~iT~~G~~~l~~~ 91 (92)
T PF14338_consen 25 IYERVAERFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIER---PKRGIWRITEKGRKALAEH 91 (92)
T ss_pred HHHHHHHHhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccC---CCCCceEECHhHHHHHhhC
Confidence 4444444324555555554321 000112233335667999999985 3478999999998776543
No 480
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=62.84 E-value=13 Score=26.88 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=33.1
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC----CCcceec
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS----GERLYGL 102 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~----~~~~y~~ 102 (357)
=|.-.++. +..++..|-+.+|+ +++-+.+.+.+|..+|+.....++ ..|.|++
T Consensus 12 yla~li~~-~~~nvp~L~~~TGm----PrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~~GyY~i 68 (90)
T PF09904_consen 12 YLAYLIDS-GERNVPALMEATGM----PRRTIQDTIKALPELGIECEFVQDGERNNAGYYRI 68 (90)
T ss_dssp HHHHHHHH-S-B-HHHHHHHH-------HHHHHHHHHGGGGGT-EEEEE--TTS-S--EEEE
T ss_pred HHHHHHhc-CCccHHHHHHHhCC----CHhHHHHHHHHhhcCCeEEEEEecCccCCCCcEEe
Confidence 34445555 34599999999999 899999999999999998875432 2455654
No 481
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=62.75 E-value=13 Score=28.34 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=38.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|+-|.+.|=+.|+.|+.||.+.+.-+++-.+.-+.-+|+-|+..|+|+..
T Consensus 4 ~E~~IM~~lW~~~~~t~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~ 54 (115)
T PF03965_consen 4 LELEIMEILWESGEATVREIHEALPEERSWAYSTVQTLLNRLVEKGFLTRE 54 (115)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhccccchhHHHHHHHHHHhCCceeEe
Confidence 455666777666789999999998852222466788999999999999975
No 482
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=62.32 E-value=10 Score=34.11 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
++....|..+.++|+|||+|+|+.+..-+
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLE 249 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLE 249 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchH
Confidence 56779999999999999999999875433
No 483
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=62.04 E-value=9.6 Score=36.56 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=29.3
Q ss_pred CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 250 VPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 250 ~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.+.+|+|++. .||+.-..+.+++...||||..|.+.+-+
T Consensus 95 ~~~ADvVviL-----lPDt~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 95 IPQADLVINL-----TPDKQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred HHhCCEEEEc-----CChHHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 4556998873 35555567779999999999999886643
No 484
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=61.97 E-value=11 Score=32.34 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=37.4
Q ss_pred ChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
-|++.+.++. +.|..|||+++++ .+.-+++.+..|+..|++..+
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~i----S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALTI----SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhCc----cHHHHHHHHHHHHhCCeEEEE
Confidence 4667777621 5899999999999 899999999999999999963
No 485
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=61.83 E-value=21 Score=34.96 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=56.2
Q ss_pred CCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC--------------C--------
Q 018366 194 NVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD--------------S-------- 249 (357)
Q Consensus 194 ~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~--------------~-------- 249 (357)
++.+++=+|+|. |..+..+++.. +..++++|. +...+.++.. ..+++..|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 457999999985 45566666654 456888887 6666666543 22333333211 0
Q ss_pred CC----CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 250 VP----EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 250 ~p----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
++ +.|+|+..-.+..-+ ...-+.++..+.||||+.++-
T Consensus 241 ~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence 12 239997766554432 223467888899999998663
No 486
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=61.61 E-value=14 Score=32.43 Aligned_cols=53 Identities=19% Similarity=0.148 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
++..-+|||+.++. +|-.++..+..|.++|+++.++.+ .|.|.-|..+...+.
T Consensus 24 r~IKgeeIA~~l~r----npGTVRNqmq~LkaLgLVegvpGP-kGGY~PT~kAYe~L~ 76 (294)
T COG2524 24 RPIKGEEIAEVLNR----NPGTVRNQMQSLKALGLVEGVPGP-KGGYKPTSKAYEALS 76 (294)
T ss_pred CCcchHHHHHHHcc----CcchHHHHHHHHHhcCccccccCC-CCCccccHHHHHHhc
Confidence 38999999999999 999999999999999999986533 577876666554443
No 487
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=61.54 E-value=42 Score=30.35 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=49.6
Q ss_pred CceEEEEcCC-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCC-CEEEeccccccCChhHHH
Q 018366 195 VERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEG-DAILMKWILHCWDDDHCL 271 (357)
Q Consensus 195 ~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~~~~~~ 271 (357)
..+++=+||| .|.++..+++...-..++.+|. +.-++.+... .+ .|..+..+.+ |+|+-.- .. .
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~--i~~~~~~~~g~Dvvid~~-----G~---~ 211 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EV--LDPEKDPRRDYRAIYDAS-----GD---P 211 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cc--cChhhccCCCCCEEEECC-----CC---H
Confidence 4567877865 5777888888764333556665 4444444432 11 1211112223 7776432 11 2
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 018366 272 RILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 272 ~~L~~~~~~LkpgG~l~i~e~ 292 (357)
..+..+.+.|+|+|+++++-.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEee
Confidence 457788889999999998764
No 488
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=61.19 E-value=10 Score=34.47 Aligned_cols=27 Identities=7% Similarity=0.130 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+.....|..+.+.|+|||+|+|+.+..
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 456789999999999999999998754
No 489
>PHA02591 hypothetical protein; Provisional
Probab=60.96 E-value=13 Score=25.88 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=25.6
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHH
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRL 82 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~ 82 (357)
+-..|.+. +.|.++||+.+|+ +...+++.|+.
T Consensus 51 vA~eL~eq-GlSqeqIA~~LGV----sqetVrKYL~~ 82 (83)
T PHA02591 51 VTHELARK-GFTVEKIASLLGV----SVRKVRRYLES 82 (83)
T ss_pred HHHHHHHc-CCCHHHHHHHhCC----CHHHHHHHHhc
Confidence 34456664 7999999999999 88889888763
No 490
>PRK09273 hypothetical protein; Provisional
Probab=60.92 E-value=9.4 Score=32.42 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=35.5
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGG 244 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 244 (357)
....=++||||.-..-.+.++|++++-.+--+.....++++.+-++++.
T Consensus 64 ~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~hNnaNVL~L 112 (211)
T PRK09273 64 VDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALSL 112 (211)
T ss_pred CCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEEE
Confidence 3455679999999999999999999755544777777776554444443
No 491
>PF11972 HTH_13: HTH DNA binding domain; InterPro: IPR021068 The proteins in this entry have not been characterised. They contain a C-terminal helix-turn-helix DNA binding domain.
Probab=60.71 E-value=20 Score=23.27 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=33.0
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCccee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYG 101 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~ 101 (357)
++|.|-..+-+|+..+++.+++ .+....++++-|. + .+ -++.++|+
T Consensus 4 Lidll~~~P~Vsa~mva~~L~v----T~~~A~~li~eLg---~-rE--iTGr~R~R 49 (54)
T PF11972_consen 4 LIDLLLSRPLVSAPMVAKELGV----TPQAAQRLIAELG---L-RE--ITGRGRYR 49 (54)
T ss_pred HHHHHHhCccccHHHHHHHhCC----CHHHHHHHHHHhh---c-ee--ecCCcccc
Confidence 5677777656999999999999 7888888776544 4 22 24566775
No 492
>PRK09462 fur ferric uptake regulator; Provisional
Probab=60.47 E-value=21 Score=28.49 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=40.5
Q ss_pred HHHHhChhHHHHhC--CCCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCcceeee
Q 018366 40 AAIQLGVFEIIAKA--GKLSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 40 ~a~~lglfd~L~~~--g~~t~~~la~~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+..+.-|++.|... ++.|++||-+.+.-. .+.+..-+.|.|+.|+..|+|.+.
T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~ 71 (148)
T PRK09462 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (148)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45667788888753 489999999988531 112556789999999999999875
No 493
>PRK10736 hypothetical protein; Provisional
Probab=60.24 E-value=13 Score=34.85 Aligned_cols=52 Identities=8% Similarity=-0.091 Sum_probs=42.3
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
+..|++.|.. .|.++++|+.++++ +...+...|-.|+-.|++... .++.|+.
T Consensus 310 ~~~v~~~l~~-~~~~iD~L~~~~~l----~~~~v~~~L~~LEl~G~v~~~---~g~~~~~ 361 (374)
T PRK10736 310 FPELLANVGD-EVTPVDVVAERAGQ----PVPEVVTQLLELELAGWIAAV---PGGYVRL 361 (374)
T ss_pred HHHHHHhcCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEEc---CCcEEEE
Confidence 3467888875 38999999999999 889999999999999999964 2455654
No 494
>COG3398 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.01 E-value=16 Score=31.27 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 38 TQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 38 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
|+-...-.+++.|.+++..|.-+||...|+ +..-+.-.+..|...|++.+......-.|+.+|-
T Consensus 171 Lkn~~~k~I~~eiq~~~~~t~~~ia~~l~l----s~aTV~~~lk~l~~~Gii~~~~~Gr~iiy~in~s 234 (240)
T COG3398 171 LKNETSKAIIYEIQENKCNTNLLIAYELNL----SVATVAYHLKKLEELGIIPEDREGRSIIYSINPS 234 (240)
T ss_pred hhchhHHHHHHHHhcCCcchHHHHHHHcCc----cHHHHHHHHHHHHHcCCCcccccCceEEEEeCHH
Confidence 344444568899998767999999999999 8889999999999999999753222224666554
No 495
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=59.90 E-value=10 Score=31.50 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
|.|-++||+.+|+ .++-+.|.|..|...|++..
T Consensus 143 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~ 175 (193)
T TIGR03697 143 RLSHQAIAEAIGS----TRVTITRLLGDLRKKKLISI 175 (193)
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 89999999999999999996
No 496
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.76 E-value=24 Score=28.99 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=40.7
Q ss_pred HHHHhChhHHHHhCC-CCCHHHHHHHhCcCC-CCCcchHHHHHHHHhcCcceeee
Q 018366 40 AAIQLGVFEIIAKAG-KLSAPEIAAQLQAQN-VKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 40 ~a~~lglfd~L~~~g-~~t~~~la~~~~~~~-~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+-.+.-|++.|...+ +.|+++|.+.+.-.. ..+..-+.|.|+.|+..|+|.+.
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 556667888887643 899999999886411 12556789999999999999976
No 497
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=59.75 E-value=83 Score=29.18 Aligned_cols=93 Identities=10% Similarity=0.079 Sum_probs=51.9
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-CCceEEEcCCCCCCCCC-CEEEeccccccCChhHHHH
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-AGVEHVGGNMFDSVPEG-DAILMKWILHCWDDDHCLR 272 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~~~~~~~ 272 (357)
.++||=+|.-...+...+.. ...++...+........+.. .++.| ..++..+.+.. |.|++...= ..+...-
T Consensus 20 ~~~~l~~~~~~d~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~~~~~~d~~~~~~pk---~k~~~~~ 93 (342)
T PRK09489 20 QRRVLFAGDLQDDLPAQLDA--ASVRVHTQQFHHWQVLSRQMGDNARF-SLVATAEDVADCDTLIYYWPK---NKQEAQF 93 (342)
T ss_pred CCcEEEEcCcchhhHHhhhc--cceEEehhhhHHHHHHHhhcCCceEe-ccccCCccCCCCCEEEEECCC---CHHHHHH
Confidence 45889899877777777652 22333332222221111111 12222 23332233333 877663321 1346778
Q ss_pred HHHHHHHhCCCCCEEEEEeec
Q 018366 273 ILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 273 ~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.|.++.+.|+|||.|+++-..
T Consensus 94 ~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 94 QLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred HHHHHHHhCCCCCEEEEEEec
Confidence 999999999999999997654
No 498
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=59.33 E-value=70 Score=26.03 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=40.7
Q ss_pred CCceEEEEcCCcchH-HHHHHhhCCCCeEEEeechHHHHhCCCCC--CceEEEcCCCCCCCCCCEEEeccccccCChhHH
Q 018366 194 NVERLVDVGGGFGVT-LSMITSKYPQIKAVNFDLPHVVQDAPSYA--GVEHVGGNMFDSVPEGDAILMKWILHCWDDDHC 270 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~-~~~l~~~~p~~~~~~~D~~~~~~~a~~~~--~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~ 270 (357)
...+|+=.|+|+... ....+...++.-..++|. ....+.+-.+ ++.++.-+.+... ..|+|+... | .-.
T Consensus 67 ~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~-np~K~G~~~PGt~ipI~~p~~l~~~-~pd~vivla----w--~y~ 138 (160)
T PF08484_consen 67 EGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDD-NPLKQGKYLPGTHIPIVSPEELKER-KPDYVIVLA----W--NYK 138 (160)
T ss_dssp TT--EEEE---SHHHHHHHHHT--TTTS--EEES--GGGTTEE-TTT--EEEEGGG--SS---SEEEES-----G--GGH
T ss_pred cCCEEEEECcchHHHHHHHHhCCCcceeEEEEeC-ChhhcCcccCCCCCeECCHHHHhhC-CCCEEEEcC----h--hhH
Confidence 456899899887654 455565545644555663 2222222223 3555555433211 116665432 1 234
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 018366 271 LRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 271 ~~~L~~~~~~LkpgG~l~i 289 (357)
.++++++.+.++.||++++
T Consensus 139 ~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 139 DEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp HHHHHHTHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHhcCCEEEE
Confidence 5778888888889999987
No 499
>PRK06545 prephenate dehydrogenase; Validated
Probab=58.41 E-value=54 Score=30.60 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=45.5
Q ss_pred eEEEEcCCc--chHHHHHHhhCCCCeEEEeech-HHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHH
Q 018366 197 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDLP-HVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRI 273 (357)
Q Consensus 197 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~ 273 (357)
+|.=||+|. |.++..+.+..++..++..|.. .....+....-+.-...|..+...+.|+|++.- |......+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilav-----P~~~~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAV-----PVDATAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeC-----CHHHHHHH
Confidence 566778773 4566667666666666666642 222211111111101111111122349888754 55667788
Q ss_pred HHHHHH-hCCCCCEE
Q 018366 274 LKNCYK-AIPDNGKV 287 (357)
Q Consensus 274 L~~~~~-~LkpgG~l 287 (357)
++++.. .++|+..+
T Consensus 77 l~~l~~~~l~~~~iv 91 (359)
T PRK06545 77 LAELADLELKPGVIV 91 (359)
T ss_pred HHHHhhcCCCCCcEE
Confidence 999887 48887443
No 500
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=58.31 E-value=13 Score=27.88 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=32.5
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
-+|+..||+++++ +-...++.|+.|++.|++..+.
T Consensus 59 ~ITp~~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V~ 93 (105)
T PF03297_consen 59 LITPSVLSERLKI----NGSLARKALRELESKGLIKPVS 93 (105)
T ss_dssp CECHHHHHHHHCC----SCHHHHHHHHHHHHCCSSEEEE
T ss_pred EeeHHHHHHhHhh----HHHHHHHHHHHHHHCCCEEEEe
Confidence 5899999999999 8899999999999999998764
Done!