Query 018366
Match_columns 357
No_of_seqs 197 out of 2269
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 14:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 2.4E-55 8.2E-60 407.2 31.5 331 17-357 4-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 6.6E-54 2.3E-58 399.1 36.2 344 14-357 13-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 4.4E-54 1.5E-58 401.1 35.0 357 1-357 1-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 4.7E-49 1.6E-53 364.9 32.8 324 18-357 19-347 (348)
5 3gwz_A MMCR; methyltransferase 100.0 7E-49 2.4E-53 366.3 29.8 327 15-357 32-368 (369)
6 1fp1_D Isoliquiritigenin 2'-O- 100.0 3.2E-48 1.1E-52 362.5 31.3 337 20-357 21-372 (372)
7 3i53_A O-methyltransferase; CO 100.0 8.3E-49 2.8E-53 361.2 25.9 316 23-357 7-331 (332)
8 1fp2_A Isoflavone O-methyltran 100.0 6.9E-48 2.4E-52 357.7 30.8 336 16-357 11-352 (352)
9 1zg3_A Isoflavanone 4'-O-methy 100.0 6.6E-48 2.3E-52 358.6 30.0 335 19-357 8-358 (358)
10 2ip2_A Probable phenazine-spec 100.0 3.4E-47 1.1E-51 350.8 30.5 319 20-357 7-333 (334)
11 3dp7_A SAM-dependent methyltra 100.0 3.1E-45 1E-49 341.0 25.8 323 18-357 12-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 1.9E-44 6.4E-49 337.5 26.1 324 19-357 14-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 5.9E-44 2E-48 332.4 26.9 326 17-357 15-355 (360)
14 2r3s_A Uncharacterized protein 100.0 3.7E-43 1.3E-47 323.8 30.0 315 23-356 8-333 (335)
15 1x19_A CRTF-related protein; m 100.0 1.1E-42 3.8E-47 323.6 32.0 311 19-357 28-358 (359)
16 3mcz_A O-methyltransferase; ad 100.0 1.1E-42 3.9E-47 322.8 27.6 312 21-357 24-348 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 6.4E-21 2.2E-25 168.5 17.3 163 192-356 68-255 (261)
18 3dtn_A Putative methyltransfer 99.8 9.7E-20 3.3E-24 158.5 17.9 171 183-355 33-223 (234)
19 3dlc_A Putative S-adenosyl-L-m 99.8 5.9E-20 2E-24 157.9 6.6 169 183-356 34-213 (219)
20 3hnr_A Probable methyltransfer 99.8 3.3E-18 1.1E-22 147.3 16.9 166 184-357 36-211 (220)
21 3dh0_A SAM dependent methyltra 99.8 1.9E-18 6.6E-23 148.7 13.9 155 183-357 27-192 (219)
22 3ujc_A Phosphoethanolamine N-m 99.8 3.5E-18 1.2E-22 151.4 14.8 155 183-347 45-207 (266)
23 3dli_A Methyltransferase; PSI- 99.8 7.5E-18 2.6E-22 147.2 16.4 164 169-347 16-185 (240)
24 1ve3_A Hypothetical protein PH 99.8 4.5E-19 1.5E-23 153.4 7.9 168 183-357 30-226 (227)
25 1vl5_A Unknown conserved prote 99.8 4E-18 1.4E-22 150.7 13.1 155 181-346 25-190 (260)
26 3ou2_A SAM-dependent methyltra 99.8 8.6E-18 2.9E-22 144.3 14.4 160 183-346 35-205 (218)
27 1kpg_A CFA synthase;, cyclopro 99.7 1.8E-17 6.2E-22 148.7 14.8 161 183-346 54-228 (287)
28 3bus_A REBM, methyltransferase 99.7 2.3E-17 8E-22 146.8 14.5 156 183-347 51-217 (273)
29 3hem_A Cyclopropane-fatty-acyl 99.7 4.6E-17 1.6E-21 147.2 16.3 162 183-347 62-244 (302)
30 1xxl_A YCGJ protein; structura 99.7 2.1E-17 7.2E-22 144.3 13.5 154 182-346 10-174 (239)
31 1xtp_A LMAJ004091AAA; SGPP, st 99.7 1.3E-17 4.4E-22 146.8 11.2 149 183-347 83-239 (254)
32 3pfg_A N-methyltransferase; N, 99.7 1.3E-17 4.6E-22 147.6 11.3 162 194-357 50-248 (263)
33 3ege_A Putative methyltransfer 99.7 4.9E-17 1.7E-21 143.9 14.9 151 183-346 24-178 (261)
34 3kkz_A Uncharacterized protein 99.7 2.2E-17 7.5E-22 146.6 12.2 151 184-347 36-197 (267)
35 3f4k_A Putative methyltransfer 99.7 3E-17 1E-21 144.7 12.8 152 183-347 35-197 (257)
36 2o57_A Putative sarcosine dime 99.7 3.3E-17 1.1E-21 147.7 13.4 153 183-346 68-234 (297)
37 3vc1_A Geranyl diphosphate 2-C 99.7 6.4E-17 2.2E-21 147.0 15.2 162 174-346 97-269 (312)
38 1nkv_A Hypothetical protein YJ 99.7 2.2E-17 7.6E-22 145.5 11.0 153 182-346 25-187 (256)
39 3mgg_A Methyltransferase; NYSG 99.7 2E-17 6.8E-22 147.5 10.6 153 192-346 35-198 (276)
40 2fk8_A Methoxy mycolic acid sy 99.7 1.2E-16 4.2E-21 145.4 15.8 161 183-346 80-254 (318)
41 3ocj_A Putative exported prote 99.7 4.1E-17 1.4E-21 147.8 11.6 166 192-357 116-303 (305)
42 3h2b_A SAM-dependent methyltra 99.7 1.7E-17 5.8E-22 141.0 8.4 137 195-347 42-183 (203)
43 3i9f_A Putative type 11 methyl 99.7 2.2E-17 7.7E-22 136.2 8.6 146 185-356 9-158 (170)
44 2p7i_A Hypothetical protein; p 99.7 5.1E-17 1.7E-21 142.2 11.2 144 193-345 41-198 (250)
45 3e23_A Uncharacterized protein 99.7 4.6E-17 1.6E-21 139.3 10.5 138 192-346 41-182 (211)
46 3gu3_A Methyltransferase; alph 99.7 6.9E-17 2.4E-21 144.7 11.8 161 184-346 12-190 (284)
47 1pjz_A Thiopurine S-methyltran 99.7 5E-17 1.7E-21 138.3 10.3 141 184-346 13-176 (203)
48 3bxo_A N,N-dimethyltransferase 99.7 5.7E-17 1.9E-21 141.2 10.9 163 193-357 39-238 (239)
49 2qe6_A Uncharacterized protein 99.7 2.3E-16 7.9E-21 140.4 14.9 150 184-342 67-238 (274)
50 3l8d_A Methyltransferase; stru 99.7 3E-16 1E-20 136.9 15.0 141 194-346 53-200 (242)
51 3g2m_A PCZA361.24; SAM-depende 99.7 9E-17 3.1E-21 145.1 11.5 173 180-356 70-290 (299)
52 2ex4_A Adrenal gland protein A 99.7 3.6E-17 1.2E-21 142.9 8.3 138 194-347 79-226 (241)
53 3jwg_A HEN1, methyltransferase 99.7 2.4E-16 8.3E-21 135.5 12.9 151 184-343 20-189 (219)
54 2qm3_A Predicted methyltransfe 99.7 2.6E-15 8.9E-20 139.6 20.6 215 45-293 47-279 (373)
55 3lcc_A Putative methyl chlorid 99.7 1.5E-16 5E-21 138.5 11.2 132 195-347 67-208 (235)
56 3jwh_A HEN1; methyltransferase 99.7 2.1E-16 7.2E-21 135.8 11.8 150 184-342 20-188 (217)
57 4fsd_A Arsenic methyltransfera 99.7 1.8E-16 6.1E-21 148.0 12.3 144 193-345 82-250 (383)
58 3sm3_A SAM-dependent methyltra 99.7 3.5E-16 1.2E-20 135.7 12.4 148 193-345 29-206 (235)
59 3bkw_A MLL3908 protein, S-aden 99.7 4.2E-16 1.4E-20 136.1 12.8 159 184-346 34-214 (243)
60 3ccf_A Cyclopropane-fatty-acyl 99.7 3.1E-16 1.1E-20 140.1 12.0 154 183-346 47-210 (279)
61 3bkx_A SAM-dependent methyltra 99.7 8.3E-16 2.8E-20 136.9 14.2 161 183-346 33-219 (275)
62 2p35_A Trans-aconitate 2-methy 99.7 2E-16 6.8E-21 139.5 9.1 152 183-340 23-184 (259)
63 3g5l_A Putative S-adenosylmeth 99.6 4.5E-16 1.5E-20 136.9 10.5 159 184-346 35-216 (253)
64 4htf_A S-adenosylmethionine-de 99.6 4.9E-16 1.7E-20 139.2 10.7 156 183-347 59-233 (285)
65 2yqz_A Hypothetical protein TT 99.6 8.3E-16 2.8E-20 135.8 11.8 146 192-344 37-194 (263)
66 1vlm_A SAM-dependent methyltra 99.6 1E-15 3.6E-20 131.7 11.6 137 195-346 48-188 (219)
67 1y8c_A S-adenosylmethionine-de 99.6 8.7E-16 3E-20 134.2 10.5 96 194-291 37-142 (246)
68 3g07_A 7SK snRNA methylphospha 99.6 2.2E-16 7.5E-21 142.0 6.7 145 194-346 46-269 (292)
69 2xvm_A Tellurite resistance pr 99.6 2.5E-15 8.5E-20 126.9 12.4 142 184-346 23-173 (199)
70 3e8s_A Putative SAM dependent 99.6 3.5E-16 1.2E-20 134.9 7.0 153 184-345 43-208 (227)
71 2zfu_A Nucleomethylin, cerebra 99.6 2.3E-15 8E-20 129.0 12.0 133 182-357 55-190 (215)
72 3cgg_A SAM-dependent methyltra 99.6 1.5E-14 5.2E-19 121.4 16.5 132 184-346 38-175 (195)
73 4hg2_A Methyltransferase type 99.6 1.6E-15 5.3E-20 133.5 10.5 97 194-295 39-139 (257)
74 3ggd_A SAM-dependent methyltra 99.6 9E-16 3.1E-20 134.3 8.8 145 192-344 54-217 (245)
75 2p8j_A S-adenosylmethionine-de 99.6 5.2E-16 1.8E-20 132.3 6.8 151 192-343 21-180 (209)
76 3d2l_A SAM-dependent methyltra 99.6 8.6E-15 2.9E-19 127.7 14.5 101 184-290 26-136 (243)
77 3cc8_A Putative methyltransfer 99.6 3.9E-15 1.4E-19 128.5 11.8 152 183-347 23-186 (230)
78 3g5t_A Trans-aconitate 3-methy 99.6 5.8E-15 2E-19 133.1 11.6 163 169-339 13-197 (299)
79 2aot_A HMT, histamine N-methyl 99.6 2.9E-15 1E-19 134.7 9.3 141 193-343 51-218 (292)
80 2gb4_A Thiopurine S-methyltran 99.6 1.1E-14 3.9E-19 127.7 11.9 132 193-345 67-226 (252)
81 3giw_A Protein of unknown func 99.6 5.6E-14 1.9E-18 123.0 14.6 152 183-342 67-243 (277)
82 3thr_A Glycine N-methyltransfe 99.6 1.2E-15 4.3E-20 137.0 4.0 106 184-292 48-176 (293)
83 3q87_B N6 adenine specific DNA 99.5 1.6E-13 5.3E-18 113.2 15.9 118 194-347 23-150 (170)
84 4e2x_A TCAB9; kijanose, tetron 99.5 7.5E-15 2.6E-19 138.6 8.0 150 182-347 96-254 (416)
85 2a14_A Indolethylamine N-methy 99.5 4.2E-15 1.4E-19 131.6 5.5 140 192-346 53-238 (263)
86 1wzn_A SAM-dependent methyltra 99.5 3.9E-13 1.4E-17 117.8 17.4 105 184-291 32-145 (252)
87 1ri5_A MRNA capping enzyme; me 99.5 6E-15 2.1E-19 132.7 5.9 153 193-346 63-250 (298)
88 3m70_A Tellurite resistance pr 99.5 5E-14 1.7E-18 126.1 11.8 140 184-344 111-258 (286)
89 2i62_A Nicotinamide N-methyltr 99.5 2.3E-14 7.9E-19 126.6 9.3 140 193-347 55-240 (265)
90 2kw5_A SLR1183 protein; struct 99.5 4.8E-14 1.6E-18 119.5 10.6 140 184-346 23-171 (202)
91 3e05_A Precorrin-6Y C5,15-meth 99.5 2.7E-13 9.2E-18 115.1 14.5 120 184-338 31-160 (204)
92 3ofk_A Nodulation protein S; N 99.5 6.8E-15 2.3E-19 126.1 4.5 99 192-292 49-155 (216)
93 2gs9_A Hypothetical protein TT 99.5 5.9E-14 2E-18 119.7 10.3 138 184-337 28-171 (211)
94 1fbn_A MJ fibrillarin homologu 99.5 4.1E-13 1.4E-17 116.3 15.3 145 186-356 67-226 (230)
95 2g72_A Phenylethanolamine N-me 99.5 1.1E-14 3.7E-19 130.7 5.2 138 194-346 71-256 (289)
96 3mq2_A 16S rRNA methyltransfer 99.5 6.1E-14 2.1E-18 120.4 9.2 147 186-346 20-184 (218)
97 3grz_A L11 mtase, ribosomal pr 99.5 6E-14 2E-18 119.2 8.8 130 193-357 59-196 (205)
98 2b3t_A Protein methyltransfera 99.5 2.2E-13 7.6E-18 121.3 12.8 143 183-357 100-275 (276)
99 3uwp_A Histone-lysine N-methyl 99.5 1.2E-13 4.2E-18 126.8 10.4 112 183-298 163-295 (438)
100 3orh_A Guanidinoacetate N-meth 99.5 1.4E-14 4.9E-19 126.0 4.0 133 193-343 59-207 (236)
101 1dus_A MJ0882; hypothetical pr 99.5 2.5E-13 8.5E-18 113.8 11.5 141 183-357 42-193 (194)
102 3p2e_A 16S rRNA methylase; met 99.5 2.3E-13 7.9E-18 117.4 11.0 152 184-347 16-186 (225)
103 1af7_A Chemotaxis receptor met 99.5 2E-13 6.7E-18 120.8 9.7 96 194-289 105-250 (274)
104 3hm2_A Precorrin-6Y C5,15-meth 99.4 3.6E-13 1.2E-17 111.5 10.2 101 184-292 16-128 (178)
105 4dzr_A Protein-(glutamine-N5) 99.4 5.1E-14 1.7E-18 120.2 5.1 144 183-355 19-202 (215)
106 3htx_A HEN1; HEN1, small RNA m 99.4 7.8E-13 2.7E-17 130.3 13.4 108 184-293 712-836 (950)
107 3bgv_A MRNA CAP guanine-N7 met 99.4 3.1E-13 1.1E-17 122.6 8.6 99 194-293 34-157 (313)
108 2vdw_A Vaccinia virus capping 99.4 3.7E-13 1.3E-17 121.2 8.4 152 194-346 48-246 (302)
109 3iv6_A Putative Zn-dependent a 99.4 4.4E-13 1.5E-17 117.6 8.3 107 182-292 34-149 (261)
110 1zx0_A Guanidinoacetate N-meth 99.4 1.5E-13 5.3E-18 119.4 5.1 100 193-293 59-172 (236)
111 4df3_A Fibrillarin-like rRNA/T 99.4 1.2E-12 4E-17 112.5 10.3 133 192-348 75-219 (233)
112 1yzh_A TRNA (guanine-N(7)-)-me 99.4 2.9E-12 9.8E-17 109.6 11.6 98 194-291 41-156 (214)
113 3evz_A Methyltransferase; NYSG 99.4 2.6E-12 8.9E-17 111.0 10.9 135 193-356 54-218 (230)
114 1nt2_A Fibrillarin-like PRE-rR 99.4 5.2E-12 1.8E-16 107.7 12.0 136 192-356 55-208 (210)
115 2pxx_A Uncharacterized protein 99.4 7.2E-13 2.5E-17 113.0 6.6 100 193-293 41-161 (215)
116 1yb2_A Hypothetical protein TA 99.4 3.2E-13 1.1E-17 120.2 4.4 125 184-345 101-236 (275)
117 3njr_A Precorrin-6Y methylase; 99.4 7.2E-12 2.5E-16 106.3 12.5 122 184-344 46-178 (204)
118 2nxc_A L11 mtase, ribosomal pr 99.4 7.9E-13 2.7E-17 116.2 6.7 124 193-352 119-250 (254)
119 3mb5_A SAM-dependent methyltra 99.3 2.3E-12 7.8E-17 113.2 9.0 128 182-346 82-222 (255)
120 1g8a_A Fibrillarin-like PRE-rR 99.3 1.5E-11 5.2E-16 106.0 13.9 141 192-357 71-226 (227)
121 2fca_A TRNA (guanine-N(7)-)-me 99.3 3E-12 1E-16 109.4 9.4 98 194-291 38-153 (213)
122 3m33_A Uncharacterized protein 99.3 8.6E-13 2.9E-17 113.9 5.9 113 193-345 47-166 (226)
123 3fzg_A 16S rRNA methylase; met 99.3 9.7E-13 3.3E-17 108.1 5.6 132 194-347 49-188 (200)
124 2ipx_A RRNA 2'-O-methyltransfe 99.3 2.8E-12 9.7E-17 111.1 8.5 140 192-355 75-229 (233)
125 1l3i_A Precorrin-6Y methyltran 99.3 3.6E-12 1.2E-16 106.5 8.5 120 184-340 24-154 (192)
126 3bwc_A Spermidine synthase; SA 99.3 7.1E-12 2.4E-16 113.0 10.4 129 193-346 94-240 (304)
127 1jsx_A Glucose-inhibited divis 99.3 2.4E-12 8.3E-17 109.3 6.5 91 195-291 66-165 (207)
128 3mti_A RRNA methylase; SAM-dep 99.3 3.9E-12 1.3E-16 106.1 7.6 100 192-293 20-137 (185)
129 4dcm_A Ribosomal RNA large sub 99.3 5.3E-12 1.8E-16 117.0 9.2 108 184-292 213-335 (375)
130 3id6_C Fibrillarin-like rRNA/T 99.3 5.6E-11 1.9E-15 102.3 14.4 149 184-356 64-229 (232)
131 3hp7_A Hemolysin, putative; st 99.3 1.7E-11 5.9E-16 108.7 11.5 150 182-347 73-233 (291)
132 2pwy_A TRNA (adenine-N(1)-)-me 99.3 4.4E-12 1.5E-16 111.5 7.6 127 183-346 86-224 (258)
133 3fpf_A Mtnas, putative unchara 99.3 8.5E-12 2.9E-16 110.5 9.4 96 192-292 120-223 (298)
134 2yxd_A Probable cobalt-precorr 99.3 1.2E-11 4.2E-16 102.5 9.9 120 184-343 26-154 (183)
135 1xdz_A Methyltransferase GIDB; 99.3 3.3E-12 1.1E-16 111.2 6.6 120 193-345 69-201 (240)
136 2pjd_A Ribosomal RNA small sub 99.3 2.3E-12 7.9E-17 118.3 5.9 110 183-293 186-305 (343)
137 2h00_A Methyltransferase 10 do 99.3 3.4E-13 1.2E-17 118.5 0.3 145 194-347 65-239 (254)
138 3eey_A Putative rRNA methylase 99.3 4.4E-12 1.5E-16 106.8 6.9 102 192-293 20-141 (197)
139 2avn_A Ubiquinone/menaquinone 99.3 5.5E-12 1.9E-16 111.2 7.7 97 194-293 54-154 (260)
140 3lpm_A Putative methyltransfer 99.3 1.9E-11 6.4E-16 107.7 11.0 134 192-356 46-217 (259)
141 2plw_A Ribosomal RNA methyltra 99.3 2.7E-11 9.1E-16 102.3 11.3 106 182-291 10-154 (201)
142 3kr9_A SAM-dependent methyltra 99.3 2.1E-11 7.3E-16 104.1 10.6 128 194-356 15-156 (225)
143 3dxy_A TRNA (guanine-N(7)-)-me 99.3 2.5E-12 8.4E-17 110.3 4.5 99 194-292 34-151 (218)
144 2ld4_A Anamorsin; methyltransf 99.3 5.7E-12 1.9E-16 104.2 6.5 109 192-338 10-128 (176)
145 1u2z_A Histone-lysine N-methyl 99.2 3.1E-11 1.1E-15 112.9 11.7 111 183-297 232-365 (433)
146 3lec_A NADB-rossmann superfami 99.2 4E-11 1.4E-15 102.6 10.7 135 184-356 14-162 (230)
147 2y1w_A Histone-arginine methyl 99.2 8.6E-12 2.9E-16 114.7 7.0 105 184-290 41-154 (348)
148 1o54_A SAM-dependent O-methylt 99.2 1E-11 3.6E-16 110.5 7.2 128 182-346 101-239 (277)
149 3tfw_A Putative O-methyltransf 99.2 3.7E-11 1.3E-15 105.1 10.7 98 192-294 61-173 (248)
150 1ej0_A FTSJ; methyltransferase 99.2 2E-11 6.9E-16 100.5 8.5 105 184-292 12-137 (180)
151 3duw_A OMT, O-methyltransferas 99.2 1.3E-11 4.4E-16 106.1 7.4 97 193-294 57-170 (223)
152 1o9g_A RRNA methyltransferase; 99.2 2.3E-11 7.8E-16 106.6 9.1 109 184-293 42-216 (250)
153 3opn_A Putative hemolysin; str 99.2 2.8E-11 9.4E-16 104.7 9.4 149 183-347 26-185 (232)
154 3p9n_A Possible methyltransfer 99.2 3.9E-11 1.3E-15 100.4 9.9 99 194-294 44-156 (189)
155 3ckk_A TRNA (guanine-N(7)-)-me 99.2 2.4E-11 8.1E-16 105.4 8.7 100 193-292 45-169 (235)
156 2frn_A Hypothetical protein PH 99.2 4.7E-11 1.6E-15 106.3 10.7 120 193-342 124-253 (278)
157 3b3j_A Histone-arginine methyl 99.2 1.3E-11 4.5E-16 117.8 7.5 106 182-289 147-261 (480)
158 3g89_A Ribosomal RNA small sub 99.2 1.1E-11 3.8E-16 108.4 6.4 121 193-346 79-212 (249)
159 2yxe_A Protein-L-isoaspartate 99.2 3E-11 1E-15 103.2 7.7 100 184-292 68-178 (215)
160 3lbf_A Protein-L-isoaspartate 99.2 3.5E-11 1.2E-15 102.4 7.9 99 184-293 68-176 (210)
161 3gnl_A Uncharacterized protein 99.2 9.4E-11 3.2E-15 101.1 10.4 135 184-356 14-162 (244)
162 3u81_A Catechol O-methyltransf 99.2 2.4E-11 8.2E-16 104.4 6.7 98 193-293 57-172 (221)
163 2fyt_A Protein arginine N-meth 99.2 5.7E-11 1.9E-15 108.8 9.5 103 184-288 55-168 (340)
164 2bm8_A Cephalosporin hydroxyla 99.2 9.6E-11 3.3E-15 101.6 9.5 93 195-292 82-188 (236)
165 3lcv_B Sisomicin-gentamicin re 99.2 2.4E-11 8.3E-16 104.5 5.4 133 193-345 131-271 (281)
166 3ntv_A MW1564 protein; rossman 99.2 1.9E-11 6.6E-16 105.8 4.8 97 193-294 70-179 (232)
167 3r3h_A O-methyltransferase, SA 99.1 3.5E-11 1.2E-15 104.8 6.3 97 194-295 60-174 (242)
168 3sso_A Methyltransferase; macr 99.1 3.9E-11 1.3E-15 110.0 6.5 103 183-293 207-326 (419)
169 3q7e_A Protein arginine N-meth 99.1 3.7E-11 1.3E-15 110.5 6.2 96 193-289 65-171 (349)
170 1vbf_A 231AA long hypothetical 99.1 7.1E-11 2.4E-15 102.0 7.4 100 183-293 60-167 (231)
171 2b25_A Hypothetical protein; s 99.1 4.3E-11 1.5E-15 109.6 6.2 104 182-293 94-221 (336)
172 3adn_A Spermidine synthase; am 99.1 7.2E-11 2.5E-15 105.6 7.3 99 193-291 82-198 (294)
173 2ozv_A Hypothetical protein AT 99.1 7.2E-11 2.5E-15 104.0 7.1 100 192-291 34-170 (260)
174 1jg1_A PIMT;, protein-L-isoasp 99.1 6.9E-11 2.4E-15 102.5 6.9 101 182-292 80-190 (235)
175 3gjy_A Spermidine synthase; AP 99.1 5E-11 1.7E-15 106.9 6.0 98 195-292 90-201 (317)
176 2vdv_E TRNA (guanine-N(7)-)-me 99.1 4.8E-11 1.6E-15 104.3 5.7 94 193-291 48-173 (246)
177 3r0q_C Probable protein argini 99.1 9.3E-11 3.2E-15 108.9 7.7 108 184-293 54-171 (376)
178 2esr_A Methyltransferase; stru 99.1 5.4E-11 1.8E-15 98.3 5.5 107 184-294 21-141 (177)
179 1dl5_A Protein-L-isoaspartate 99.1 1E-10 3.5E-15 106.1 7.6 102 183-293 65-177 (317)
180 3bzb_A Uncharacterized protein 99.1 5.4E-10 1.8E-14 99.5 12.0 95 193-290 78-204 (281)
181 1p91_A Ribosomal RNA large sub 99.1 1.2E-10 3.9E-15 103.1 7.5 93 193-294 84-181 (269)
182 3dmg_A Probable ribosomal RNA 99.1 1.4E-10 4.7E-15 107.6 8.1 97 194-292 233-341 (381)
183 2gpy_A O-methyltransferase; st 99.1 5E-11 1.7E-15 103.2 4.9 96 194-294 54-163 (233)
184 1i9g_A Hypothetical protein RV 99.1 2.4E-10 8.2E-15 101.7 9.3 103 182-292 88-204 (280)
185 2hnk_A SAM-dependent O-methylt 99.1 1.5E-10 5.2E-15 100.6 7.7 97 193-294 59-184 (239)
186 3tr6_A O-methyltransferase; ce 99.1 3.2E-11 1.1E-15 103.7 3.3 97 194-295 64-178 (225)
187 3dou_A Ribosomal RNA large sub 99.1 3.2E-10 1.1E-14 95.0 9.3 106 181-292 12-140 (191)
188 2nyu_A Putative ribosomal RNA 99.1 5E-10 1.7E-14 93.9 10.2 105 184-292 12-146 (196)
189 1nv8_A HEMK protein; class I a 99.1 2.7E-10 9.3E-15 101.6 8.8 94 194-289 123-247 (284)
190 1g6q_1 HnRNP arginine N-methyl 99.1 1.5E-10 5.2E-15 105.5 7.3 95 194-289 38-143 (328)
191 3dr5_A Putative O-methyltransf 99.0 9.7E-11 3.3E-15 100.5 4.3 95 195-294 57-166 (221)
192 3c3p_A Methyltransferase; NP_9 99.0 1E-10 3.4E-15 99.6 4.0 96 194-294 56-163 (210)
193 2fhp_A Methylase, putative; al 99.0 1.2E-10 4.2E-15 96.9 4.5 107 184-294 34-157 (187)
194 2oxt_A Nucleoside-2'-O-methylt 99.0 6E-10 2.1E-14 98.1 9.0 105 183-292 64-186 (265)
195 1ixk_A Methyltransferase; open 99.0 5.6E-10 1.9E-14 101.1 8.7 108 186-294 111-249 (315)
196 3tma_A Methyltransferase; thum 99.0 6.9E-10 2.3E-14 102.3 9.4 110 181-291 191-317 (354)
197 1sui_A Caffeoyl-COA O-methyltr 99.0 1.8E-10 6.1E-15 100.7 5.0 97 193-294 78-193 (247)
198 3frh_A 16S rRNA methylase; met 99.0 4.1E-10 1.4E-14 96.0 6.8 95 193-291 104-206 (253)
199 2p41_A Type II methyltransfera 99.0 1.2E-09 4.2E-14 98.1 10.2 103 184-290 73-190 (305)
200 1r18_A Protein-L-isoaspartate( 99.0 3.3E-10 1.1E-14 97.6 6.0 93 192-292 82-195 (227)
201 2wa2_A Non-structural protein 99.0 7.1E-10 2.4E-14 98.2 8.0 105 183-292 72-194 (276)
202 2ift_A Putative methylase HI07 99.0 1.4E-10 4.7E-15 98.1 3.1 97 194-294 53-166 (201)
203 1ws6_A Methyltransferase; stru 99.0 1.6E-10 5.5E-15 94.6 3.2 95 194-294 41-150 (171)
204 2yvl_A TRMI protein, hypotheti 99.0 1.2E-09 4.2E-14 95.1 9.0 100 183-292 81-191 (248)
205 2i7c_A Spermidine synthase; tr 99.0 3.2E-10 1.1E-14 101.1 5.1 99 193-291 77-192 (283)
206 2pbf_A Protein-L-isoaspartate 99.0 4.6E-10 1.6E-14 96.6 6.0 93 192-292 78-194 (227)
207 1xj5_A Spermidine synthase 1; 99.0 3.7E-10 1.3E-14 102.7 5.6 98 193-290 119-234 (334)
208 1i1n_A Protein-L-isoaspartate 99.0 8.3E-10 2.8E-14 94.9 7.3 93 192-292 75-183 (226)
209 1iy9_A Spermidine synthase; ro 99.0 3.9E-10 1.3E-14 100.1 5.3 98 194-291 75-189 (275)
210 3gdh_A Trimethylguanosine synt 99.0 2.2E-11 7.5E-16 106.0 -2.8 134 194-348 78-221 (241)
211 1uir_A Polyamine aminopropyltr 99.0 3.1E-10 1.1E-14 102.6 4.5 98 194-291 77-195 (314)
212 2avd_A Catechol-O-methyltransf 99.0 3.4E-10 1.2E-14 97.5 4.2 97 193-294 68-182 (229)
213 2o07_A Spermidine synthase; st 98.9 3.6E-10 1.2E-14 101.7 4.4 99 193-291 94-209 (304)
214 2fpo_A Methylase YHHF; structu 98.9 5.4E-10 1.9E-14 94.5 5.2 96 195-294 55-163 (202)
215 1mjf_A Spermidine synthase; sp 98.9 5.4E-10 1.8E-14 99.5 5.2 97 194-291 75-193 (281)
216 3c3y_A Pfomt, O-methyltransfer 98.9 4.1E-10 1.4E-14 97.7 4.2 97 193-294 69-184 (237)
217 2b2c_A Spermidine synthase; be 98.9 3.3E-10 1.1E-14 102.2 3.6 98 194-291 108-222 (314)
218 2pt6_A Spermidine synthase; tr 98.9 4.3E-10 1.5E-14 102.0 4.2 98 194-291 116-230 (321)
219 3cbg_A O-methyltransferase; cy 98.9 3.3E-10 1.1E-14 98.0 3.0 96 194-294 72-185 (232)
220 1zq9_A Probable dimethyladenos 98.9 1.1E-09 3.9E-14 97.6 6.4 103 182-288 17-144 (285)
221 4hc4_A Protein arginine N-meth 98.9 1.2E-09 4E-14 100.6 6.6 94 195-289 84-187 (376)
222 3a27_A TYW2, uncharacterized p 98.9 2E-09 6.9E-14 95.3 6.6 97 192-294 117-222 (272)
223 1ne2_A Hypothetical protein TA 98.9 2.9E-09 1E-13 89.7 7.2 87 193-281 50-139 (200)
224 1inl_A Spermidine synthase; be 98.9 9.5E-10 3.2E-14 98.6 4.4 97 194-290 90-204 (296)
225 2cmg_A Spermidine synthase; tr 98.8 3.9E-09 1.3E-13 92.7 7.0 88 194-291 72-171 (262)
226 1wy7_A Hypothetical protein PH 98.8 3.4E-08 1.2E-12 83.4 12.1 87 193-281 48-141 (207)
227 2xyq_A Putative 2'-O-methyl tr 98.8 9E-09 3.1E-13 91.4 8.6 116 192-344 61-195 (290)
228 3tm4_A TRNA (guanine N2-)-meth 98.8 1.5E-08 5.1E-13 93.9 10.1 122 192-347 215-353 (373)
229 2yxl_A PH0851 protein, 450AA l 98.8 8.2E-09 2.8E-13 98.0 8.5 108 186-294 252-392 (450)
230 2ih2_A Modification methylase 98.8 1.5E-08 5.1E-13 95.4 9.8 106 183-292 29-165 (421)
231 2f8l_A Hypothetical protein LM 98.8 5.5E-09 1.9E-13 95.8 6.5 100 193-292 129-257 (344)
232 1qam_A ERMC' methyltransferase 98.8 9E-09 3.1E-13 89.6 7.5 104 182-288 19-143 (244)
233 2igt_A SAM dependent methyltra 98.8 1.5E-08 5E-13 92.3 8.9 95 194-292 153-273 (332)
234 3ajd_A Putative methyltransfer 98.8 3.7E-09 1.3E-13 93.7 4.8 103 192-294 81-214 (274)
235 3b5i_A S-adenosyl-L-methionine 98.8 9.3E-08 3.2E-12 87.7 13.8 151 195-345 53-297 (374)
236 4azs_A Methyltransferase WBDD; 98.8 1.9E-09 6.5E-14 105.4 2.3 101 194-296 66-178 (569)
237 1yub_A Ermam, rRNA methyltrans 98.8 2.5E-09 8.6E-14 93.2 2.7 106 183-291 19-145 (245)
238 3k6r_A Putative transferase PH 98.7 1.9E-08 6.4E-13 88.8 7.2 119 193-341 124-252 (278)
239 2h1r_A Dimethyladenosine trans 98.7 2.8E-08 9.6E-13 89.1 7.4 100 182-285 31-153 (299)
240 1sqg_A SUN protein, FMU protei 98.7 3.3E-08 1.1E-12 93.3 7.6 108 186-294 239-377 (429)
241 3m6w_A RRNA methylase; rRNA me 98.6 1.4E-08 4.8E-13 95.9 4.3 102 192-294 99-232 (464)
242 2frx_A Hypothetical protein YE 98.6 5.3E-08 1.8E-12 92.8 8.2 101 194-294 117-249 (479)
243 1m6e_X S-adenosyl-L-methionnin 98.6 6.7E-07 2.3E-11 81.5 14.2 151 193-343 50-277 (359)
244 2efj_A 3,7-dimethylxanthine me 98.6 6.9E-07 2.4E-11 82.0 14.3 150 195-344 53-290 (384)
245 3k0b_A Predicted N6-adenine-sp 98.5 1.6E-07 5.5E-12 87.3 8.0 111 181-292 189-351 (393)
246 3m4x_A NOL1/NOP2/SUN family pr 98.5 5.5E-08 1.9E-12 91.8 4.8 103 192-294 103-237 (456)
247 3ldg_A Putative uncharacterize 98.5 4.2E-07 1.5E-11 84.1 10.2 114 178-292 179-344 (384)
248 1rjd_A PPM1P, carboxy methyl t 98.5 6.9E-07 2.3E-11 81.0 10.9 143 194-339 97-281 (334)
249 2okc_A Type I restriction enzy 98.5 9.3E-08 3.2E-12 90.7 4.9 109 183-292 161-308 (445)
250 1uwv_A 23S rRNA (uracil-5-)-me 98.4 8E-07 2.7E-11 83.9 10.8 98 183-289 276-387 (433)
251 3ldu_A Putative methylase; str 98.4 2.7E-07 9.2E-12 85.6 7.0 111 181-292 183-345 (385)
252 1wxx_A TT1595, hypothetical pr 98.4 1.2E-07 4.1E-12 88.1 4.6 97 194-292 209-326 (382)
253 3ftd_A Dimethyladenosine trans 98.4 6.4E-07 2.2E-11 77.9 8.7 84 183-268 21-110 (249)
254 3gru_A Dimethyladenosine trans 98.4 5.5E-07 1.9E-11 80.2 8.2 79 182-263 39-125 (295)
255 2b78_A Hypothetical protein SM 98.4 6.8E-08 2.3E-12 89.8 2.3 98 194-292 212-332 (385)
256 2as0_A Hypothetical protein PH 98.4 1E-07 3.4E-12 89.1 3.3 98 194-292 217-336 (396)
257 4dmg_A Putative uncharacterize 98.4 3.3E-07 1.1E-11 85.1 6.7 98 194-293 214-328 (393)
258 3evf_A RNA-directed RNA polyme 98.4 1.3E-06 4.6E-11 75.6 9.8 108 181-289 62-182 (277)
259 2yx1_A Hypothetical protein MJ 98.4 2.4E-07 8.2E-12 84.5 5.2 92 193-293 194-293 (336)
260 4gqb_A Protein arginine N-meth 98.4 2.3E-07 7.8E-12 90.5 4.9 126 156-288 323-464 (637)
261 3c0k_A UPF0064 protein YCCW; P 98.3 1.9E-07 6.6E-12 87.1 3.7 96 194-292 220-340 (396)
262 3o4f_A Spermidine synthase; am 98.3 5.9E-07 2E-11 79.3 6.3 99 193-292 82-199 (294)
263 3fut_A Dimethyladenosine trans 98.3 1.2E-06 4E-11 77.1 7.8 89 183-276 37-133 (271)
264 2qfm_A Spermine synthase; sper 98.3 2.6E-07 8.8E-12 83.9 3.5 97 194-291 188-314 (364)
265 3v97_A Ribosomal RNA large sub 98.3 4.1E-07 1.4E-11 90.8 4.6 96 194-292 539-658 (703)
266 1qyr_A KSGA, high level kasuga 98.3 8.8E-07 3E-11 77.2 5.7 90 182-274 10-111 (252)
267 3uzu_A Ribosomal RNA small sub 98.2 5.1E-07 1.7E-11 79.9 3.9 68 183-251 32-105 (279)
268 3ua3_A Protein arginine N-meth 98.2 1.5E-06 5.1E-11 84.7 6.9 126 156-288 378-531 (745)
269 3tqs_A Ribosomal RNA small sub 98.2 1.7E-06 5.9E-11 75.4 6.0 67 182-251 18-90 (255)
270 2jjq_A Uncharacterized RNA met 98.2 5.7E-06 2E-10 77.6 9.6 90 194-291 290-387 (425)
271 2qy6_A UPF0209 protein YFCK; s 98.1 3.3E-06 1.1E-10 73.7 5.8 121 194-347 60-236 (257)
272 3gcz_A Polyprotein; flavivirus 98.1 4.8E-06 1.6E-10 72.2 6.5 112 178-290 75-200 (282)
273 3iei_A Leucine carboxyl methyl 98.0 0.00011 3.9E-09 66.2 14.5 145 194-346 90-281 (334)
274 3v97_A Ribosomal RNA large sub 98.0 1.4E-05 4.6E-10 79.8 8.4 111 181-292 178-348 (703)
275 1m6y_A S-adenosyl-methyltransf 98.0 6E-06 2E-10 73.7 5.2 78 182-260 15-106 (301)
276 2b9e_A NOL1/NOP2/SUN domain fa 97.9 2.8E-05 9.7E-10 69.7 8.2 102 192-294 100-237 (309)
277 2ar0_A M.ecoki, type I restric 97.9 8.2E-06 2.8E-10 78.9 4.4 109 183-292 159-313 (541)
278 2r6z_A UPF0341 protein in RSP 97.9 2E-05 6.7E-10 68.8 6.2 98 193-294 82-219 (258)
279 3bt7_A TRNA (uracil-5-)-methyl 97.8 6.6E-06 2.2E-10 75.9 3.2 97 184-292 205-327 (369)
280 2dul_A N(2),N(2)-dimethylguano 97.8 9.9E-06 3.4E-10 74.7 4.3 91 195-291 48-164 (378)
281 4auk_A Ribosomal RNA large sub 97.8 0.00011 3.7E-09 66.7 10.8 95 192-291 209-306 (375)
282 3eld_A Methyltransferase; flav 97.8 0.00013 4.5E-09 63.7 10.2 109 180-290 68-190 (300)
283 2px2_A Genome polyprotein [con 97.6 0.00026 8.9E-09 60.4 9.5 109 179-289 59-181 (269)
284 3p8z_A Mtase, non-structural p 97.6 0.00042 1.4E-08 58.3 10.2 107 180-289 65-184 (267)
285 2uyo_A Hypothetical protein ML 97.6 0.0006 2.1E-08 61.0 12.0 144 194-341 102-274 (310)
286 3axs_A Probable N(2),N(2)-dime 97.6 2E-05 6.9E-10 72.8 2.3 92 194-291 52-158 (392)
287 3s1s_A Restriction endonucleas 97.6 0.00022 7.4E-09 70.8 9.2 100 193-292 320-466 (878)
288 2k4m_A TR8_protein, UPF0146 pr 97.6 0.00019 6.5E-09 55.9 7.0 85 193-294 34-124 (153)
289 3c6k_A Spermine synthase; sper 97.5 3.4E-05 1.1E-09 70.3 3.0 96 194-290 205-330 (381)
290 2vz8_A Fatty acid synthase; tr 97.5 2.6E-05 9E-10 87.7 2.8 141 194-344 1240-1393(2512)
291 3lkz_A Non-structural protein 97.5 0.00056 1.9E-08 59.4 10.4 107 181-289 82-202 (321)
292 3khk_A Type I restriction-modi 97.5 5.1E-05 1.7E-09 73.3 3.5 109 182-292 234-396 (544)
293 3lkd_A Type I restriction-modi 97.4 0.00049 1.7E-08 66.4 9.3 98 194-292 221-359 (542)
294 2oyr_A UPF0341 protein YHIQ; a 97.4 6E-05 2.1E-09 65.6 2.3 77 185-264 78-176 (258)
295 1xmk_A Double-stranded RNA-spe 97.4 0.00021 7.3E-09 49.6 4.5 62 42-108 12-74 (79)
296 2wk1_A NOVP; transferase, O-me 97.3 0.00084 2.9E-08 59.0 8.5 95 193-291 105-244 (282)
297 3b73_A PHIH1 repressor-like pr 97.2 0.00028 9.6E-09 52.7 4.1 65 42-113 14-80 (111)
298 3cvo_A Methyltransferase-like 97.2 0.0016 5.5E-08 54.2 8.6 88 194-292 30-154 (202)
299 3pqk_A Biofilm growth-associat 97.1 0.00087 3E-08 49.3 5.7 63 37-104 19-81 (102)
300 2zwa_A Leucine carboxyl methyl 97.0 0.0061 2.1E-07 60.9 13.0 146 194-345 107-308 (695)
301 1wg8_A Predicted S-adenosylmet 97.0 0.00087 3E-08 58.4 5.5 65 181-248 10-77 (285)
302 3ll7_A Putative methyltransfer 97.0 0.00032 1.1E-08 65.0 2.9 64 194-259 93-170 (410)
303 3jth_A Transcription activator 96.9 0.00061 2.1E-08 49.7 3.7 64 37-105 19-82 (98)
304 3cuo_A Uncharacterized HTH-typ 96.9 0.00069 2.3E-08 49.4 3.9 64 38-105 21-84 (99)
305 1u2w_A CADC repressor, cadmium 96.9 0.00094 3.2E-08 50.9 4.7 67 35-105 36-102 (122)
306 2heo_A Z-DNA binding protein 1 96.8 0.00073 2.5E-08 45.6 3.0 54 43-103 12-66 (67)
307 1ub9_A Hypothetical protein PH 96.8 0.00084 2.9E-08 48.9 3.3 68 36-107 11-81 (100)
308 1y0u_A Arsenical resistance op 96.8 0.0014 4.9E-08 47.5 4.4 61 37-107 27-87 (96)
309 3f6o_A Probable transcriptiona 96.7 0.00096 3.3E-08 50.6 3.2 66 36-106 13-78 (118)
310 1qgp_A Protein (double strande 96.6 0.0019 6.4E-08 44.8 4.1 58 42-104 15-75 (77)
311 1qbj_A Protein (double-strande 96.6 0.0026 8.7E-08 44.5 4.8 61 42-107 11-74 (81)
312 2htj_A P fimbrial regulatory p 96.6 0.003 1E-07 44.2 4.8 45 44-92 3-47 (81)
313 2jsc_A Transcriptional regulat 96.5 0.002 6.9E-08 48.7 3.9 64 37-105 17-80 (118)
314 1r1u_A CZRA, repressor protein 96.5 0.0022 7.5E-08 47.5 3.9 48 40-92 25-72 (106)
315 2oqg_A Possible transcriptiona 96.5 0.0017 5.8E-08 48.6 3.3 62 41-107 21-82 (114)
316 1tbx_A ORF F-93, hypothetical 96.5 0.002 6.8E-08 47.0 3.5 65 43-111 10-78 (99)
317 2kko_A Possible transcriptiona 96.4 0.0012 4.1E-08 49.2 2.0 59 41-104 25-83 (108)
318 3f6v_A Possible transcriptiona 96.4 0.002 7E-08 51.0 3.3 69 34-107 51-119 (151)
319 3df8_A Possible HXLR family tr 96.3 0.0033 1.1E-07 47.0 3.8 76 21-111 16-94 (111)
320 1r1t_A Transcriptional repress 96.3 0.0038 1.3E-07 47.5 4.2 60 40-104 45-104 (122)
321 3ech_A MEXR, multidrug resista 96.2 0.014 4.6E-07 45.4 7.5 68 40-111 36-106 (142)
322 4fzv_A Putative methyltransfer 96.2 0.004 1.4E-07 56.7 4.7 104 192-295 146-288 (359)
323 3tka_A Ribosomal RNA small sub 96.2 0.0091 3.1E-07 53.3 6.7 67 181-248 45-115 (347)
324 2hzt_A Putative HTH-type trans 96.1 0.0081 2.8E-07 44.5 5.3 74 23-110 5-82 (107)
325 3vyw_A MNMC2; tRNA wobble urid 96.0 0.036 1.2E-06 49.0 9.8 121 194-348 96-250 (308)
326 1xn7_A Hypothetical protein YH 96.0 0.0072 2.4E-07 41.9 4.0 43 46-92 7-49 (78)
327 3k0l_A Repressor protein; heli 95.9 0.013 4.5E-07 46.7 6.2 67 41-111 46-115 (162)
328 2zkz_A Transcriptional repress 95.9 0.0045 1.5E-07 45.1 3.0 63 38-105 24-86 (99)
329 1i4w_A Mitochondrial replicati 95.9 0.0096 3.3E-07 54.0 5.8 65 183-248 42-116 (353)
330 2k02_A Ferrous iron transport 95.9 0.0069 2.4E-07 42.8 3.7 43 46-92 7-49 (87)
331 3bja_A Transcriptional regulat 95.8 0.0099 3.4E-07 45.8 4.9 66 41-110 33-101 (139)
332 3mq0_A Transcriptional repress 95.8 0.0071 2.4E-07 53.0 4.3 57 44-107 33-90 (275)
333 1oyi_A Double-stranded RNA-bin 95.8 0.0085 2.9E-07 41.7 3.7 59 41-105 17-75 (82)
334 3bpv_A Transcriptional regulat 95.7 0.01 3.4E-07 45.8 4.5 66 41-110 29-97 (138)
335 3g3z_A NMB1585, transcriptiona 95.7 0.01 3.4E-07 46.3 4.5 67 41-111 31-100 (145)
336 1jgs_A Multiple antibiotic res 95.7 0.01 3.5E-07 45.8 4.4 66 42-111 35-103 (138)
337 1z7u_A Hypothetical protein EF 95.7 0.011 3.8E-07 44.1 4.4 76 21-110 11-90 (112)
338 4a5n_A Uncharacterized HTH-typ 95.7 0.016 5.6E-07 44.5 5.4 77 21-111 15-95 (131)
339 2lkp_A Transcriptional regulat 95.7 0.028 9.7E-07 42.2 6.7 72 10-92 7-78 (119)
340 3bdd_A Regulatory protein MARR 95.7 0.017 5.9E-07 44.6 5.7 66 41-110 31-99 (142)
341 2fu4_A Ferric uptake regulatio 95.6 0.0097 3.3E-07 41.7 3.6 48 42-93 18-72 (83)
342 2hr3_A Probable transcriptiona 95.6 0.015 5.1E-07 45.3 5.1 68 40-111 34-105 (147)
343 2nnn_A Probable transcriptiona 95.6 0.0094 3.2E-07 46.0 3.8 66 41-110 38-106 (140)
344 2wte_A CSA3; antiviral protein 95.6 0.011 3.7E-07 50.8 4.5 64 42-111 153-216 (244)
345 2jt1_A PEFI protein; solution 95.6 0.0089 3E-07 41.2 3.2 35 54-92 23-57 (77)
346 1r7j_A Conserved hypothetical 95.6 0.016 5.3E-07 41.9 4.6 56 46-111 13-68 (95)
347 3nrv_A Putative transcriptiona 95.5 0.011 3.9E-07 46.1 4.2 67 41-111 40-109 (148)
348 3oop_A LIN2960 protein; protei 95.5 0.0081 2.8E-07 46.7 3.3 67 41-111 37-106 (143)
349 2rdp_A Putative transcriptiona 95.5 0.012 4E-07 46.1 4.3 64 43-110 44-110 (150)
350 1on2_A Transcriptional regulat 95.5 0.013 4.6E-07 45.5 4.5 53 51-110 18-70 (142)
351 2fbh_A Transcriptional regulat 95.5 0.016 5.5E-07 45.0 4.9 64 43-110 39-106 (146)
352 1yyv_A Putative transcriptiona 95.5 0.013 4.5E-07 45.1 4.2 76 21-110 24-103 (131)
353 2gxg_A 146AA long hypothetical 95.5 0.016 5.5E-07 45.0 4.9 65 41-110 37-104 (146)
354 3lwf_A LIN1550 protein, putati 95.4 0.022 7.6E-07 45.3 5.6 45 54-103 43-87 (159)
355 3ufb_A Type I restriction-modi 95.4 0.053 1.8E-06 52.1 9.3 110 182-292 206-363 (530)
356 1lj9_A Transcriptional regulat 95.4 0.014 4.8E-07 45.3 4.4 64 43-110 31-97 (144)
357 2y75_A HTH-type transcriptiona 95.4 0.024 8.3E-07 43.3 5.6 46 54-104 25-70 (129)
358 3kp7_A Transcriptional regulat 95.4 0.068 2.3E-06 41.8 8.4 63 43-110 40-107 (151)
359 3cdh_A Transcriptional regulat 95.4 0.013 4.5E-07 46.2 4.0 66 42-111 44-112 (155)
360 3hsr_A HTH-type transcriptiona 95.4 0.0074 2.5E-07 46.8 2.5 66 42-111 37-105 (140)
361 2fa5_A Transcriptional regulat 95.3 0.027 9.3E-07 44.6 5.9 65 42-110 50-117 (162)
362 2qww_A Transcriptional regulat 95.3 0.015 5E-07 45.8 4.2 66 42-111 42-112 (154)
363 2fsw_A PG_0823 protein; alpha- 95.3 0.015 5.1E-07 42.9 4.0 76 21-110 14-93 (107)
364 2xrn_A HTH-type transcriptiona 95.3 0.011 3.9E-07 50.6 3.7 60 44-109 9-69 (241)
365 2nyx_A Probable transcriptiona 95.3 0.051 1.8E-06 43.4 7.4 67 41-111 45-114 (168)
366 3e6m_A MARR family transcripti 95.2 0.047 1.6E-06 43.3 7.1 66 42-111 54-122 (161)
367 1mkm_A ICLR transcriptional re 95.2 0.018 6E-07 49.7 4.7 56 44-106 11-67 (249)
368 2a61_A Transcriptional regulat 95.2 0.016 5.4E-07 45.0 4.1 67 41-111 33-102 (145)
369 2fbi_A Probable transcriptiona 95.2 0.011 3.7E-07 45.7 3.1 66 41-110 36-104 (142)
370 4hbl_A Transcriptional regulat 95.2 0.011 3.6E-07 46.5 3.0 66 41-110 41-109 (149)
371 3k69_A Putative transcription 95.2 0.033 1.1E-06 44.5 5.8 60 36-104 13-72 (162)
372 3eco_A MEPR; mutlidrug efflux 95.2 0.018 6E-07 44.4 4.2 66 42-111 32-102 (139)
373 3s2w_A Transcriptional regulat 95.2 0.015 5.1E-07 46.1 3.8 64 44-111 53-119 (159)
374 3r24_A NSP16, 2'-O-methyl tran 95.2 0.028 9.5E-07 48.9 5.5 91 193-290 108-216 (344)
375 3bj6_A Transcriptional regulat 95.1 0.02 6.7E-07 44.9 4.4 65 42-110 41-108 (152)
376 2eth_A Transcriptional regulat 95.1 0.022 7.6E-07 44.8 4.7 66 41-110 44-112 (154)
377 3bro_A Transcriptional regulat 95.1 0.029 9.9E-07 43.2 5.1 65 42-110 35-104 (141)
378 3cjn_A Transcriptional regulat 95.1 0.019 6.4E-07 45.7 4.1 66 41-110 52-120 (162)
379 3f3x_A Transcriptional regulat 95.0 0.028 9.6E-07 43.6 5.0 66 41-111 37-105 (144)
380 1sfx_A Conserved hypothetical 95.0 0.019 6.4E-07 42.1 3.7 48 41-92 20-67 (109)
381 2bv6_A MGRA, HTH-type transcri 95.0 0.023 8E-07 43.9 4.4 67 41-111 37-106 (142)
382 3tgn_A ADC operon repressor AD 95.0 0.025 8.7E-07 43.9 4.6 65 41-110 38-105 (146)
383 3boq_A Transcriptional regulat 94.9 0.03 1E-06 44.3 5.0 65 42-110 48-116 (160)
384 3r4k_A Transcriptional regulat 94.9 0.009 3.1E-07 51.9 2.0 58 44-107 9-67 (260)
385 2pex_A Transcriptional regulat 94.9 0.023 8E-07 44.6 4.3 66 42-111 48-116 (153)
386 2pg4_A Uncharacterized protein 94.9 0.028 9.6E-07 40.4 4.3 61 46-110 20-83 (95)
387 3t8r_A Staphylococcus aureus C 94.9 0.038 1.3E-06 43.1 5.4 46 54-104 27-72 (143)
388 2f2e_A PA1607; transcription f 94.9 0.034 1.2E-06 43.6 5.1 74 23-110 15-90 (146)
389 3deu_A Transcriptional regulat 94.8 0.023 7.9E-07 45.5 4.0 67 41-111 53-123 (166)
390 1ylf_A RRF2 family protein; st 94.8 0.035 1.2E-06 43.7 4.9 59 36-104 15-73 (149)
391 2frh_A SARA, staphylococcal ac 94.8 0.015 5.3E-07 44.3 2.8 66 42-111 38-108 (127)
392 3jw4_A Transcriptional regulat 94.7 0.019 6.5E-07 44.9 3.2 65 42-110 42-111 (148)
393 1z91_A Organic hydroperoxide r 94.7 0.016 5.6E-07 45.1 2.8 67 41-111 40-109 (147)
394 1p6r_A Penicillinase repressor 94.6 0.023 7.9E-07 39.6 3.1 51 42-92 10-60 (82)
395 1s3j_A YUSO protein; structura 94.6 0.12 4.1E-06 40.4 7.7 64 43-110 39-105 (155)
396 1bja_A Transcription regulator 94.5 0.04 1.4E-06 39.4 4.1 61 43-111 18-79 (95)
397 2zig_A TTHA0409, putative modi 94.5 0.03 1E-06 49.5 4.3 51 181-235 224-275 (297)
398 3fm5_A Transcriptional regulat 94.4 0.033 1.1E-06 43.5 3.9 67 41-111 39-109 (150)
399 2p4w_A Transcriptional regulat 94.3 0.05 1.7E-06 45.2 4.9 67 36-107 10-81 (202)
400 2g7u_A Transcriptional regulat 94.2 0.033 1.1E-06 48.2 3.9 59 44-110 17-76 (257)
401 3nqo_A MARR-family transcripti 94.2 0.047 1.6E-06 44.7 4.6 68 40-111 40-112 (189)
402 2x4h_A Hypothetical protein SS 94.0 0.064 2.2E-06 41.3 4.9 50 53-110 29-78 (139)
403 4aik_A Transcriptional regulat 94.0 0.083 2.8E-06 41.5 5.5 65 43-111 33-101 (151)
404 2o0y_A Transcriptional regulat 93.9 0.03 1E-06 48.5 3.1 57 44-107 26-83 (260)
405 1q1h_A TFE, transcription fact 93.8 0.051 1.7E-06 40.2 3.7 46 43-92 20-66 (110)
406 2ia2_A Putative transcriptiona 93.7 0.032 1.1E-06 48.5 2.9 55 44-106 24-79 (265)
407 2h09_A Transcriptional regulat 93.7 0.1 3.4E-06 41.1 5.5 55 49-110 48-102 (155)
408 2qvo_A Uncharacterized protein 93.6 0.039 1.3E-06 39.6 2.6 51 56-111 31-82 (95)
409 3u2r_A Regulatory protein MARR 93.5 0.055 1.9E-06 43.2 3.8 66 42-111 47-117 (168)
410 2obp_A Putative DNA-binding pr 93.5 0.1 3.5E-06 37.5 4.7 53 54-110 35-88 (96)
411 4b8x_A SCO5413, possible MARR- 93.4 0.041 1.4E-06 43.1 2.7 62 45-110 39-105 (147)
412 2fxa_A Protease production reg 93.2 0.047 1.6E-06 45.5 3.0 66 42-111 49-117 (207)
413 1okr_A MECI, methicillin resis 93.2 0.037 1.3E-06 41.7 2.2 51 43-93 12-62 (123)
414 1xd7_A YWNA; structural genomi 93.2 0.078 2.7E-06 41.4 4.0 58 35-104 9-66 (145)
415 3r0a_A Putative transcriptiona 93.1 0.066 2.2E-06 40.5 3.4 47 42-92 27-75 (123)
416 2w25_A Probable transcriptiona 93.0 0.1 3.5E-06 40.9 4.6 47 42-92 8-54 (150)
417 2cfx_A HTH-type transcriptiona 92.9 0.1 3.6E-06 40.5 4.4 45 43-91 7-51 (144)
418 2pn6_A ST1022, 150AA long hypo 92.9 0.087 3E-06 41.2 3.9 46 42-91 4-49 (150)
419 1ku9_A Hypothetical protein MJ 92.8 0.094 3.2E-06 40.6 4.1 44 45-92 30-74 (152)
420 4g6q_A Putative uncharacterize 92.7 0.041 1.4E-06 44.9 1.8 67 36-107 18-90 (182)
421 2fbk_A Transcriptional regulat 92.6 0.053 1.8E-06 44.0 2.3 65 42-110 70-140 (181)
422 2p5v_A Transcriptional regulat 92.5 0.12 4.3E-06 41.0 4.4 46 42-91 11-56 (162)
423 2k4b_A Transcriptional regulat 92.3 0.062 2.1E-06 39.0 2.1 51 42-92 36-86 (99)
424 2esh_A Conserved hypothetical 92.0 0.46 1.6E-05 35.5 6.8 70 37-111 9-91 (118)
425 2cyy_A Putative HTH-type trans 92.0 0.12 4.3E-06 40.4 3.7 46 42-91 8-53 (151)
426 2qlz_A Transcription factor PF 91.9 0.035 1.2E-06 47.1 0.5 68 35-107 6-79 (232)
427 2cg4_A Regulatory protein ASNC 91.9 0.14 4.8E-06 40.2 3.9 46 42-91 9-54 (152)
428 3hrs_A Metalloregulator SCAR; 91.8 0.14 4.7E-06 42.9 4.0 52 53-111 18-69 (214)
429 2dbb_A Putative HTH-type trans 91.7 0.16 5.3E-06 39.8 4.0 46 42-91 10-55 (151)
430 2ia0_A Putative HTH-type trans 91.6 0.18 6.2E-06 40.5 4.4 46 42-91 18-63 (171)
431 2d1h_A ST1889, 109AA long hypo 91.6 0.15 5E-06 37.1 3.6 36 53-92 34-69 (109)
432 2e1c_A Putative HTH-type trans 91.6 0.17 5.8E-06 40.7 4.2 47 41-91 27-73 (171)
433 2lnb_A Z-DNA-binding protein 1 91.5 0.14 4.9E-06 34.6 3.0 55 42-103 20-75 (80)
434 3i4p_A Transcriptional regulat 91.5 0.16 5.4E-06 40.4 3.9 46 42-91 4-49 (162)
435 2dk5_A DNA-directed RNA polyme 91.4 0.22 7.4E-06 35.4 4.2 46 43-92 22-69 (91)
436 3u1d_A Uncharacterized protein 91.4 0.3 1E-05 38.2 5.2 66 42-111 30-106 (151)
437 1uly_A Hypothetical protein PH 91.3 0.23 7.7E-06 40.8 4.8 51 37-92 16-66 (192)
438 1i1g_A Transcriptional regulat 91.3 0.16 5.6E-06 39.1 3.7 45 43-91 6-50 (141)
439 2vn2_A DNAD, chromosome replic 91.2 0.16 5.4E-06 38.7 3.4 34 55-92 51-84 (128)
440 2g9w_A Conserved hypothetical 90.6 0.24 8.3E-06 38.1 4.1 51 42-92 10-61 (138)
441 3cta_A Riboflavin kinase; stru 90.2 0.24 8.4E-06 41.8 4.1 53 55-111 27-79 (230)
442 1p4x_A Staphylococcal accessor 90.2 0.23 7.9E-06 42.6 4.0 66 41-110 158-228 (250)
443 1sfu_A 34L protein; protein/Z- 90.1 0.27 9.1E-06 33.3 3.3 42 47-92 21-62 (75)
444 3k2z_A LEXA repressor; winged 90.0 0.25 8.7E-06 40.6 4.0 39 50-92 18-57 (196)
445 2oo3_A Protein involved in cat 89.9 0.56 1.9E-05 40.8 6.2 98 195-296 92-203 (283)
446 2o03_A Probable zinc uptake re 89.8 0.46 1.6E-05 36.2 5.1 51 39-93 9-65 (131)
447 1sd4_A Penicillinase repressor 89.7 0.21 7.4E-06 37.5 3.1 51 42-92 11-61 (126)
448 4fx0_A Probable transcriptiona 89.6 0.26 9E-06 38.4 3.6 63 43-110 35-105 (148)
449 4esf_A PADR-like transcription 89.5 0.72 2.5E-05 34.4 5.8 71 36-111 6-87 (117)
450 3elk_A Putative transcriptiona 89.2 0.38 1.3E-05 35.9 4.1 72 35-111 8-90 (117)
451 3ggo_A Prephenate dehydrogenas 89.0 1.8 6.3E-05 38.3 9.1 91 195-290 33-127 (314)
452 1hsj_A Fusion protein consisti 88.3 0.25 8.5E-06 46.7 3.1 66 41-110 404-474 (487)
453 1g60_A Adenine-specific methyl 88.2 0.46 1.6E-05 40.9 4.5 50 181-234 201-251 (260)
454 3tos_A CALS11; methyltransfera 88.2 1.2 4.3E-05 38.1 7.1 93 195-291 70-217 (257)
455 3f8b_A Transcriptional regulat 88.0 1.1 3.7E-05 33.3 5.9 72 35-111 6-90 (116)
456 2fe3_A Peroxide operon regulat 87.9 0.71 2.4E-05 35.8 5.0 59 40-102 21-86 (145)
457 1v4r_A Transcriptional repress 87.9 0.31 1.1E-05 35.3 2.7 51 38-92 16-68 (102)
458 3l7w_A Putative uncharacterize 87.5 0.52 1.8E-05 34.5 3.8 68 39-111 7-82 (108)
459 2v79_A DNA replication protein 86.7 0.38 1.3E-05 36.9 2.7 34 55-92 51-84 (135)
460 1jhg_A Trp operon repressor; c 86.6 0.83 2.8E-05 33.0 4.3 42 39-85 43-84 (101)
461 3i71_A Ethanolamine utilizatio 86.4 1.8 6E-05 27.3 5.0 43 55-105 18-60 (68)
462 3mwm_A ZUR, putative metal upt 86.2 0.88 3E-05 35.0 4.6 64 39-102 12-78 (139)
463 3hhh_A Transcriptional regulat 86.2 1.1 3.8E-05 33.2 5.0 72 35-111 7-89 (116)
464 1xma_A Predicted transcription 85.4 0.63 2.2E-05 36.2 3.4 70 37-111 37-119 (145)
465 2xig_A Ferric uptake regulatio 85.0 1.4 4.6E-05 34.4 5.2 60 39-102 25-91 (150)
466 2vxz_A Pyrsv_GP04; viral prote 84.9 0.92 3.1E-05 34.9 3.9 54 44-102 14-67 (165)
467 3b1f_A Putative prephenate deh 84.8 4.8 0.00017 34.8 9.4 89 196-289 7-99 (290)
468 1mzb_A Ferric uptake regulatio 84.6 0.99 3.4E-05 34.5 4.2 59 40-102 17-83 (136)
469 1yg2_A Gene activator APHA; vi 84.6 1.2 4E-05 35.9 4.8 64 42-110 3-79 (179)
470 1zkd_A DUF185; NESG, RPR58, st 84.3 2.3 8E-05 38.7 7.2 35 193-227 79-120 (387)
471 3mag_A VP39; methylated adenin 84.2 4.5 0.00015 35.1 8.4 79 194-295 60-142 (307)
472 2xvc_A ESCRT-III, SSO0910; cel 84.1 0.82 2.8E-05 28.8 2.7 45 43-91 12-57 (59)
473 3eyi_A Z-DNA-binding protein 1 84.0 0.84 2.9E-05 30.0 2.9 46 43-92 12-58 (72)
474 1bia_A BIRA bifunctional prote 83.9 0.95 3.3E-05 40.3 4.4 56 43-104 7-62 (321)
475 1j5y_A Transcriptional regulat 83.8 1.4 4.9E-05 35.7 5.1 58 39-104 19-78 (187)
476 1p4x_A Staphylococcal accessor 83.4 0.95 3.2E-05 38.7 4.0 65 42-110 35-104 (250)
477 1fx7_A Iron-dependent represso 83.3 0.82 2.8E-05 38.5 3.5 48 57-111 26-73 (230)
478 2b0l_A GTP-sensing transcripti 83.0 0.69 2.4E-05 33.5 2.5 44 45-92 32-76 (102)
479 1g55_A DNA cytosine methyltran 82.8 3.8 0.00013 36.7 7.9 122 195-342 2-145 (343)
480 2p5k_A Arginine repressor; DNA 82.5 1.8 6.1E-05 27.8 4.3 36 47-89 11-51 (64)
481 2c7p_A Modification methylase 82.2 4.6 0.00016 35.9 8.1 122 195-343 11-150 (327)
482 3cuq_B Vacuolar protein-sortin 82.0 1.8 6.3E-05 36.0 5.1 37 53-93 166-202 (218)
483 3ps9_A TRNA 5-methylaminomethy 81.8 3 0.0001 41.1 7.4 96 194-289 66-217 (676)
484 3g7u_A Cytosine-specific methy 81.1 5.8 0.0002 36.0 8.5 94 196-294 3-121 (376)
485 2py6_A Methyltransferase FKBM; 81.0 2.3 8E-05 39.1 5.9 41 193-233 225-268 (409)
486 2yu3_A DNA-directed RNA polyme 80.8 0.95 3.2E-05 32.3 2.5 47 42-92 38-86 (95)
487 3ri2_A Transcriptional regulat 80.5 2.7 9.3E-05 31.5 5.1 73 33-111 13-94 (123)
488 3iht_A S-adenosyl-L-methionine 80.5 4.4 0.00015 31.6 6.3 107 183-293 31-149 (174)
489 1z05_A Transcriptional regulat 79.9 1.7 6E-05 40.2 4.8 51 38-92 36-86 (429)
490 3pvc_A TRNA 5-methylaminomethy 79.9 1.8 6.1E-05 42.9 5.1 118 194-344 58-231 (689)
491 2qq9_A Diphtheria toxin repres 79.8 2.5 8.7E-05 35.3 5.3 50 55-111 24-73 (226)
492 4esb_A Transcriptional regulat 79.3 1.7 5.7E-05 32.2 3.6 65 42-111 10-85 (115)
493 2g5c_A Prephenate dehydrogenas 79.2 8.2 0.00028 33.1 8.7 88 197-289 3-94 (281)
494 2hoe_A N-acetylglucosamine kin 79.0 1.1 3.7E-05 40.9 2.9 70 33-107 12-87 (380)
495 2qlz_A Transcription factor PF 78.5 3.5 0.00012 34.7 5.8 52 44-103 168-219 (232)
496 2pjp_A Selenocysteine-specific 78.2 1.5 5.1E-05 32.7 3.1 52 42-101 8-59 (121)
497 1pl8_A Human sorbitol dehydrog 78.0 6.1 0.00021 35.3 7.7 92 192-292 169-274 (356)
498 2o0m_A Transcriptional regulat 77.5 0.47 1.6E-05 42.8 0.0 62 42-111 21-82 (345)
499 1z6r_A MLC protein; transcript 77.2 2.4 8.1E-05 38.9 4.7 48 41-92 16-63 (406)
500 3two_A Mannitol dehydrogenase; 77.1 4.5 0.00015 36.1 6.5 90 192-292 174-266 (348)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=2.4e-55 Score=407.15 Aligned_cols=331 Identities=24% Similarity=0.409 Sum_probs=294.7
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC
Q 018366 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS 95 (357)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 95 (357)
.+.+.++.|.+++.||+.+++|++|+++||||.|.+. +|.|++|||+++++ +++.++||||+|++.|++.+..++
T Consensus 4 ~e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~ 79 (353)
T 4a6d_A 4 SEDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRG 79 (353)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccC
Confidence 3558899999999999999999999999999999874 48999999999999 999999999999999999875434
Q ss_pred CCcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccC---CChhhhcccCcchHHHHHH
Q 018366 96 GERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHG---MHIFEYASGNPGFNETYHK 172 (357)
Q Consensus 96 ~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g---~~~~~~~~~~~~~~~~~~~ 172 (357)
+.+.|++|+.+..++...++.++++++.+. .+..+..|.+|.+++++|++++...+| .++|+++.++++....|.+
T Consensus 80 ~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~ 158 (353)
T 4a6d_A 80 GKAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQ 158 (353)
T ss_dssp TEEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHH
T ss_pred ccceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHH
Confidence 456899999999887777777888887765 356788999999999999999888777 4678888899999999999
Q ss_pred HHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC------CCCceEEEcCC
Q 018366 173 AMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS------YAGVEHVGGNM 246 (357)
Q Consensus 173 ~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~v~~~~~D~ 246 (357)
+|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.+|+
T Consensus 159 aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~ 237 (353)
T 4a6d_A 159 ALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDF 237 (353)
T ss_dssp HHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCT
T ss_pred HHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCcc
Confidence 999998888888999888 88889999999999999999999999999999999999887754 27899999999
Q ss_pred CC-CCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 247 FD-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 247 ~~-~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
++ +.|.+|+|+++++||+|+|+++.++|++++++|+|||+|+|+|.+.++++..+ .....+|+.|+..+ +|++||
T Consensus 238 ~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g~ert 313 (353)
T 4a6d_A 238 FKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EGQERT 313 (353)
T ss_dssp TTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SCCCCC
T ss_pred ccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CCcCCC
Confidence 98 55666999999999999999999999999999999999999999988754433 23457788888865 999999
Q ss_pred HHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+||+++|++|||+.+++++.++..++|+++|
T Consensus 314 ~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 314 PTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 99999999999999999999988899999987
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=6.6e-54 Score=399.12 Aligned_cols=344 Identities=47% Similarity=0.867 Sum_probs=301.2
Q ss_pred CchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC--CCCCHHHHHHHhCc-CCCCCcchHHHHHHHHhcCccee
Q 018366 14 NKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GKLSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLE 90 (357)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~--g~~t~~~la~~~~~-~~~~~~~~l~~~L~~L~~~g~l~ 90 (357)
...++.+.+..+++++.+++.+++|++|+++||||.|.+. +|.|++|||+++++ +++..+..++||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 4455679999999999999999999999999999999984 48999999999995 21112239999999999999999
Q ss_pred eecc---CC--CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcc
Q 018366 91 CSVS---SG--ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPG 165 (357)
Q Consensus 91 ~~~~---~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~ 165 (357)
+... ++ ++.|++|+.+..|+.++++.++++++.+...+.++..|.+|.+++++|.++|+..+|.++|+|+.++++
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~ 172 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPR 172 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHH
Confidence 7521 11 378999999998887776678898887766677889999999999999999998899999999999999
Q ss_pred hHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcC
Q 018366 166 FNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 245 (357)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 245 (357)
..+.|.++|...+......+++.++++++..+|||||||+|.++..+++.+|+++++++|+|++++.+++.++|+++.+|
T Consensus 173 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (364)
T 3p9c_A 173 FNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGD 252 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCC
Confidence 99999999999888777888888876777899999999999999999999999999999999999999988999999999
Q ss_pred CCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 246 MFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 246 ~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
+++++|.+|+|++.++||+|+++++.++|++++++|||||+|+|+|.+.++.+...........+++.|+....+++.+|
T Consensus 253 ~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt 332 (364)
T 3p9c_A 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERY 332 (364)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCB
T ss_pred cCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCC
Confidence 99888867999999999999999999999999999999999999999987654433233334567888875434899999
Q ss_pred HHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.++|+++|+++||+.+++.+..++.++||++|
T Consensus 333 ~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 333 EREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 99999999999999999999999999999997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=4.4e-54 Score=401.08 Aligned_cols=357 Identities=52% Similarity=0.915 Sum_probs=299.6
Q ss_pred CCcccccccCCCCCchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-C---CCCHHHHHHHhCcCCCCCcchH
Q 018366 1 MRSLSEIQLPKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-G---KLSAPEIAAQLQAQNVKAPMML 76 (357)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g---~~t~~~la~~~~~~~~~~~~~l 76 (357)
|.|+.|.|.+++--...+.+.+..+++++.+++.+++|++|+++||||.|.+. | |.|++|||++++..++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l 80 (368)
T 3reo_A 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVML 80 (368)
T ss_dssp ----------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHH
T ss_pred CCCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhH
Confidence 67777777532223346779999999999999999999999999999999983 3 6999999999983122233499
Q ss_pred HHHHHHHhcCcceeeecc---CC--CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccc
Q 018366 77 DRMLRLLVSHRVLECSVS---SG--ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRV 151 (357)
Q Consensus 77 ~~~L~~L~~~g~l~~~~~---~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~ 151 (357)
+||||+|++.|++++... ++ ++.|++|+.+..|+.+.++.++++++.+...+.++..|.+|.+++++|.++|+..
T Consensus 81 ~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~ 160 (368)
T 3reo_A 81 DRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKA 160 (368)
T ss_dssp HHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHH
Confidence 999999999999997421 11 3689999999988887766789988877666778899999999999999999988
Q ss_pred cCCChhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHH
Q 018366 152 HGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQ 231 (357)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 231 (357)
+|.++|+|+.++++..+.|.++|...+......+++.++++++..+|||||||+|.++..+++.+|+++++++|+|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 240 (368)
T 3reo_A 161 YGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240 (368)
T ss_dssp SSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT
T ss_pred hCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHH
Confidence 99999999999999999999999998888778888888767778899999999999999999999999999999999999
Q ss_pred hCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhh
Q 018366 232 DAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLD 311 (357)
Q Consensus 232 ~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~ 311 (357)
.+++.++|+++.+|+++++|.+|+|++.++||+|+++++.++|++++++|||||+|+|+|.+.++.+...........++
T Consensus 241 ~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d 320 (368)
T 3reo_A 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTD 320 (368)
T ss_dssp TCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHH
T ss_pred hhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhh
Confidence 99988899999999998888679999999999999999999999999999999999999998876544333333455678
Q ss_pred hhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 312 VLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 312 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+.|+....+++.+|.++|+++|+++||+.+++.+..++.++||++|
T Consensus 321 ~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 321 ALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 8777643489999999999999999999999999999999999986
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=4.7e-49 Score=364.90 Aligned_cols=324 Identities=25% Similarity=0.357 Sum_probs=285.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC
Q 018366 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE 97 (357)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 97 (357)
..+....+++++.+++.+++|++|+++||||.|.+ ||.|++|||+++|+ +++.++||||+|++.|++++ ++
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~----~~ 89 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRE----SD 89 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ET
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEe----cC
Confidence 34777899999999999999999999999999997 59999999999999 99999999999999999996 36
Q ss_pred cceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhc
Q 018366 98 RLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNH 177 (357)
Q Consensus 98 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
+.|++|+.+..++.+. +.++++++.+...+..+..|.+|.+++++|.++|...+|.++|+|+.++++....|.++|...
T Consensus 90 ~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 168 (348)
T 3lst_A 90 GRFALTDKGAALRSDS-PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETV 168 (348)
T ss_dssp TEEEECTTTGGGSTTS-SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CEEecCHHHHHHhcCC-CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 8999999999886544 456788777655566789999999999999999998899889999999999999999999998
Q ss_pred chhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-----CCCceEEEcCCCCCCCC
Q 018366 178 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGGNMFDSVPE 252 (357)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~D~~~~~p~ 252 (357)
.......+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+++++...+. .++|+++.+|+++++|.
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~ 247 (348)
T 3lst_A 169 SAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPH 247 (348)
T ss_dssp HHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCC
T ss_pred hhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCC
Confidence 8888888999888 88889999999999999999999999999999999887773321 25799999999987784
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.|+|++.++||+|+++++.++|++++++|||||+|+|.|...++.... .....+++.|+... +++.+|.++|.++
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~-~~~~~t~~e~~~l 322 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAAR-TGQERTAAELEPL 322 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHTT-SCCCCBHHHHHHH
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhcC-CCcCCCHHHHHHH
Confidence 499999999999999999999999999999999999999988764222 23346677777654 8899999999999
Q ss_pred HHHcCCceeEEeecCCceeEEEEeC
Q 018366 333 AIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 333 l~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
|+++||+++++.+..+..++||++|
T Consensus 323 l~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 323 FTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHHCCCceEEEEECCCCcEEEEEEe
Confidence 9999999999999778889999986
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=7e-49 Score=366.34 Aligned_cols=327 Identities=24% Similarity=0.438 Sum_probs=288.8
Q ss_pred chhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 15 KYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
+..+.....++++++.+++.+++|++|+++||||.|.+ ||.|++|||+++|+ +++.++|||++|++.|++++.
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~-- 104 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL-- 104 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC--
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe--
Confidence 34444778899999999999999999999999999997 59999999999999 999999999999999999963
Q ss_pred CCCcc-eecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHH
Q 018366 95 SGERL-YGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKA 173 (357)
Q Consensus 95 ~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (357)
+++. |++|+.++.+... .+.++.+++.+...+..+..|.+|.+++++|.++|...+|.++|+|+.++++....|..+
T Consensus 105 -~~~~~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 182 (369)
T 3gwz_A 105 -GHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRA 182 (369)
T ss_dssp -SSTTEEECCHHHHTTSCC-TTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred -CCCceEecCHHHHHHhcC-CchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHH
Confidence 4678 9999999987544 445788887766555577899999999999999999888988999999999999999999
Q ss_pred HhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCC
Q 018366 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNM 246 (357)
Q Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~ 246 (357)
|..........+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++ .++|+++.+|+
T Consensus 183 m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~ 261 (369)
T 3gwz_A 183 MGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDF 261 (369)
T ss_dssp HHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCC
Confidence 99988887888888887 78889999999999999999999999999999999888887764 26899999999
Q ss_pred CCCCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 247 FDSVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 247 ~~~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
++++|.. |+|++.++||+|+++++.++|++++++|||||+|+|+|.+.++.... . ...+++.|+... +++.+|
T Consensus 262 ~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~-~g~~~t 335 (369)
T 3gwz_A 262 FETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV-GGAERS 335 (369)
T ss_dssp TTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH-SCCCBC
T ss_pred CCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc-CCccCC
Confidence 9877755 99999999999999999999999999999999999999988764321 1 456777777665 899999
Q ss_pred HHHHHHHHHHcCCceeEEee-cCCceeEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFAS-CVCNLYIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~~ 357 (357)
.++|+++|+++||+++++.+ ..+..++||++|
T Consensus 336 ~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 336 ESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 99999999999999999999 578889999986
No 6
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=3.2e-48 Score=362.52 Aligned_cols=337 Identities=42% Similarity=0.746 Sum_probs=273.8
Q ss_pred HHHHHHH--HHHhhhhHHHHHHHHHHhChhHHHHhCC-C---CCHHHHHHHhCc--CCCCCcchHHHHHHHHhcCcceee
Q 018366 20 ESYSHAM--QLAMGVVLPMATQAAIQLGVFEIIAKAG-K---LSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 20 ~~~~~~~--~~~~~~~~~~~l~~a~~lglfd~L~~~g-~---~t~~~la~~~~~--~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
+....++ +++.+++.+++|++|+++|||+.|.+.| | .|++|||+++++ ++|.+++.++||||+|++.|+|.+
T Consensus 21 ~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 100 (372)
T 1fp1_D 21 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTS 100 (372)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEe
Confidence 5566777 9999999999999999999999999855 6 999999999997 134467899999999999999997
Q ss_pred ec---cCC--CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcC-CCccccccCCChhhhcccCcc
Q 018366 92 SV---SSG--ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEG-GIPFNRVHGMHIFEYASGNPG 165 (357)
Q Consensus 92 ~~---~~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~g~~~~~~~~~~~~ 165 (357)
.. .++ .+.|++|+.+..++.+.+..++++++.+...+.++..|.+|.+++++| .++|+..+|.++|+++.++++
T Consensus 101 ~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~ 180 (372)
T 1fp1_D 101 TTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKK 180 (372)
T ss_dssp EEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHH
T ss_pred cccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHH
Confidence 41 011 369999999987765443257888887765667788999999999999 888988889889999999999
Q ss_pred hHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcC
Q 018366 166 FNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 245 (357)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 245 (357)
....|..+|..........+++.++.+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++++++.+|
T Consensus 181 ~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d 260 (372)
T 1fp1_D 181 MNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGD 260 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCC
Confidence 99999999988887777888888865677889999999999999999999999999999999999999887889999999
Q ss_pred CCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 246 MFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 246 ~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
+++++|..|+|++.++||+|+++++.++|++++++|||||+++|.|...++....+........+++.|+... +++.+|
T Consensus 261 ~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t 339 (372)
T 1fp1_D 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERT 339 (372)
T ss_dssp TTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEE
T ss_pred cccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc-CCccCC
Confidence 9987776799999999999999988999999999999999999999988764332211113456677666543 788899
Q ss_pred HHHHHHHHHHcCCceeEEeecCCc-eeEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFASCVCN-LYIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~~~~-~~vie~~~ 357 (357)
.++|.++|+++||+++++.+...+ .++||++|
T Consensus 340 ~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 340 EKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 999999999999999999885433 69999987
No 7
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=8.3e-49 Score=361.15 Aligned_cols=316 Identities=25% Similarity=0.390 Sum_probs=276.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 23 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
..+.+++.+++.+++|++|+++||||.|.+ ||.|++|||+++++ +++.++|||++|++.|++.+ ++++.|.+
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~---~~~~~y~~ 78 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA-GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTR---DGQGVYGL 78 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEe---cCCCeEEc
Confidence 357889999999999999999999999987 69999999999999 99999999999999999996 34689999
Q ss_pred chhchhhhcCCCCCchhhhhhccCChhhH-HHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcchhh
Q 018366 103 TPVSKYFVSNKDGVSLGHFMALPLDKVFM-ESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIA 181 (357)
Q Consensus 103 t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (357)
|+.+..+... ++.++.+++.+...+..+ ..|.+|.+++++|.++|...+|.++|+++.++++....|..+|.......
T Consensus 79 t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 157 (332)
T 3i53_A 79 TEFGEQLRDD-HAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELD 157 (332)
T ss_dssp CTTGGGGSTT-CTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHhcC-CchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhh
Confidence 9999988654 445788888766444455 78999999999999999888898899999999999999999999887766
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCCCCCCC-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~~~p~~- 253 (357)
.+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++ .++|+++.+|+++++|..
T Consensus 158 ~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~ 236 (332)
T 3i53_A 158 YTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGA 236 (332)
T ss_dssp HTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSC
T ss_pred HHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCC
Confidence 667777776 77788999999999999999999999999999999888888764 268999999999877755
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|+++++||+|+++++.++|++++++|||||+|+|.|.+.++. .+ ...+++.|+... +++.+|.++|.++|
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~-----~~~~d~~~~~~~-~~~~~t~~e~~~ll 308 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HA-----GTGMDLRMLTYF-GGKERSLAELGELA 308 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----C-----CHHHHHHHHHHH-SCCCCCHHHHHHHH
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Cc-----cHHHHHHHHhhC-CCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987664 11 236677776654 89999999999999
Q ss_pred HHcCCceeEEeecCCceeEEEEeC
Q 018366 334 IAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 334 ~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+++||+++++.+.++ .++||++|
T Consensus 309 ~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 309 AQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHCCCEEEEEEECCC-cEEEEEee
Confidence 999999999999888 99999975
No 8
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=6.9e-48 Score=357.70 Aligned_cols=336 Identities=28% Similarity=0.493 Sum_probs=287.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc
Q 018366 16 YEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 94 (357)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 94 (357)
.+-.+....+++++.+++.+++|++++++|||+.|.+. ||.|++|||+++++ +|.+++.++|||++|++.|++++..
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~- 88 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT- 88 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec-
Confidence 44557778999999999999999999999999999974 49999999999999 4445779999999999999999741
Q ss_pred CCCcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHh-cCCCccccccCCChhhhcccCcchHHHHHHH
Q 018366 95 SGERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVM-EGGIPFNRVHGMHIFEYASGNPGFNETYHKA 173 (357)
Q Consensus 95 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (357)
++++.|++|+.+..++.+. +.++++++.+...+.++..|.+|.+.++ +|.++|+..+|.++|+++.++++....|..+
T Consensus 89 ~~~~~y~~t~~s~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 167 (352)
T 1fp2_A 89 KEEESYALTVASELLVRGS-DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDA 167 (352)
T ss_dssp SSSEEEEECHHHHTTSTTS-SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred CCCCeEeCCHHHHHHhCCC-CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHH
Confidence 1358999999999777544 3578888877656677889999999999 8888898888989999999999999999999
Q ss_pred HhhcchhhHHHHHhhcc-cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCCC
Q 018366 174 MFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPE 252 (357)
Q Consensus 174 ~~~~~~~~~~~i~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~ 252 (357)
|.......... ++.++ .+++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++.++++++.+|+++++|.
T Consensus 168 m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~ 246 (352)
T 1fp2_A 168 MASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPN 246 (352)
T ss_dssp HHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCC
T ss_pred HHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCC
Confidence 99888776666 67672 26777899999999999999999999999999999999999998877899999999887776
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCC---CCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPD---NGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEF 329 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 329 (357)
.|+|++.++||+|+++++.++|++++++||| ||+++|+|...++....+........+++.|+. . +++.+|.++|
T Consensus 247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~ 324 (352)
T 1fp2_A 247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEW 324 (352)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHH
T ss_pred ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHH
Confidence 7999999999999999889999999999999 999999999876643221111234456776665 4 5888999999
Q ss_pred HHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 330 TELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.++|+++||+.+++.+..+..++||++|
T Consensus 325 ~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 325 KKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999878889999987
No 9
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=6.6e-48 Score=358.61 Aligned_cols=335 Identities=28% Similarity=0.484 Sum_probs=286.2
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc---
Q 018366 19 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS--- 94 (357)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~--- 94 (357)
.++...+++++.+++.+++|++|+++|||+.|.+. ||.|++|||+++++ ++.+++.++||||+|++.|+|.+...
T Consensus 8 ~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~~~ 86 (358)
T 1zg3_A 8 YHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVKGK 86 (358)
T ss_dssp TTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEECCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEeccccc
Confidence 35567888999999999999999999999999974 49999999999999 55568899999999999999997410
Q ss_pred C-C---CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcC--CCccccccCCChhhhcccCcchHH
Q 018366 95 S-G---ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEG--GIPFNRVHGMHIFEYASGNPGFNE 168 (357)
Q Consensus 95 ~-~---~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~g~~~~~~~~~~~~~~~ 168 (357)
. + ++.|++|+.+..|+.+. +.++++++.+...+.++..|.+|.+++++| .++|+..+|.++|+++.++++..+
T Consensus 87 ~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~ 165 (358)
T 1zg3_A 87 EGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESST 165 (358)
T ss_dssp SSSCCCEEEEEECHHHHTTCTTS-TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHH
T ss_pred ccCCCCCCEEeCCHHHHHHhCCC-CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhh
Confidence 1 1 47999999998777544 357888887766667788999999999998 678888888889999999999999
Q ss_pred --HHHHHHhhcchhhHHHHHhhcc-cCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcC
Q 018366 169 --TYHKAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 245 (357)
Q Consensus 169 --~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 245 (357)
.|+.+|........ .+++.++ .+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++++++.+|
T Consensus 166 ~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d 244 (358)
T 1zg3_A 166 LSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGD 244 (358)
T ss_dssp HHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECC
T ss_pred HHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCc
Confidence 99999988777665 7777772 2567789999999999999999999999999999999999998887789999999
Q ss_pred CCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCC---CCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 246 MFDSVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPD---NGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 246 ~~~~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+++++|..|+|++.++||+|+++++.++|++++++||| ||+++|+|...++....+........+++.|+... +++
T Consensus 245 ~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~ 323 (358)
T 1zg3_A 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF-LGK 323 (358)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH-SCC
T ss_pred cCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC-CCC
Confidence 99877767999999999999999899999999999999 99999999988764322111234456777776654 789
Q ss_pred cCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 323 ERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+|.++|.++|+++||+.+++.+..+..++||++|
T Consensus 324 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 324 ERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 99999999999999999999999878889999987
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.4e-47 Score=350.77 Aligned_cols=319 Identities=24% Similarity=0.371 Sum_probs=279.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcc
Q 018366 20 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERL 99 (357)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 99 (357)
.+...+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++++ +++.++|||++|++.|++.+. +++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---~~~~ 78 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---TRDG 78 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec---CCCe
Confidence 466889999999999999999999999999987 59999999999999 999999999999999999963 3589
Q ss_pred eecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcch
Q 018366 100 YGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHST 179 (357)
Q Consensus 100 y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (357)
|++|+.+..++ +++.++++++.+...+.+ ..|.+|.+++++|.++|+..+|.++|+++.++++....|..+| ....
T Consensus 79 y~~t~~s~~l~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~ 154 (334)
T 2ip2_A 79 YANTPTSHLLR--DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASN 154 (334)
T ss_dssp EEECHHHHTTS--SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGH
T ss_pred EecCHHHHHHh--CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHH
Confidence 99999998777 344578888876654444 8999999999999999988888899999999999999999999 8877
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCCCCCC
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~~~p~ 252 (357)
.....+++.++ +++ .+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|+++++|.
T Consensus 155 ~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 232 (334)
T 2ip2_A 155 LAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPS 232 (334)
T ss_dssp HHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCS
T ss_pred HHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCC
Confidence 77788888887 777 89999999999999999999999999999998888777642 5799999999987776
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
. |+|++.+++|+|+++++.++|++++++|||||+++|.|...++... ......+++.|+... +++.+|.++|.+
T Consensus 233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~t~~e~~~ 307 (334)
T 2ip2_A 233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP----SPMSVLWDVHLFMAC-AGRHRTTEEVVD 307 (334)
T ss_dssp SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC----CHHHHHHHHHHHHHH-SCCCCBHHHHHH
T ss_pred CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC----cchhHHhhhHhHhhC-CCcCCCHHHHHH
Confidence 5 9999999999999999999999999999999999999998765322 123456677776655 788999999999
Q ss_pred HHHHcCCceeEEeecCCceeEEEEeC
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+++++||+++++.+.++..++|+++|
T Consensus 308 ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 308 LLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999888889999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=3.1e-45 Score=341.01 Aligned_cols=323 Identities=18% Similarity=0.264 Sum_probs=259.9
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC
Q 018366 18 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG 96 (357)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 96 (357)
..+....+++++.+++.+++|++++++||||.|.+ +||.|++|||+++|+ +++.++|||++|++.|++++.
T Consensus 12 ~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~---- 83 (363)
T 3dp7_A 12 AAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE---- 83 (363)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE----
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec----
Confidence 44677889999999999999999999999999998 469999999999999 999999999999999999862
Q ss_pred CcceecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccC--CChhhhcccCcchHH----HH
Q 018366 97 ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHG--MHIFEYASGNPGFNE----TY 170 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g--~~~~~~~~~~~~~~~----~~ 170 (357)
++.|++|+.+..++.+.+ ...++.+. .+..+..|.+|.+++++|.+++...+| .++|+++.++++..+ .|
T Consensus 84 ~~~y~~t~~s~~L~~~~~---~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f 159 (363)
T 3dp7_A 84 EDRYVLAKAGWFLLNDKM---ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGF 159 (363)
T ss_dssp TTEEEECHHHHHHHHCHH---HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHH
T ss_pred CCEEecccchHHhhCCCc---ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHH
Confidence 689999999987775432 22233322 355788999999999999988887787 689999999988665 36
Q ss_pred HHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEE
Q 018366 171 HKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVG 243 (357)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~ 243 (357)
...|..... ..++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++|+++.
T Consensus 160 ~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 235 (363)
T 3dp7_A 160 DHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHG 235 (363)
T ss_dssp HHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEE
T ss_pred HHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEE
Confidence 666654432 23444443 246689999999999999999999999999999999888877642 4799999
Q ss_pred cCCCCC---CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCc-hhhhhhhhhhhhhhhc
Q 018366 244 GNMFDS---VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSS-SARETSLLDVLLMTRD 318 (357)
Q Consensus 244 ~D~~~~---~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (357)
+|++++ +|.. |+|++.++||+|+++++.++|++++++|||||+|+|+|.+.++.+.... ........++.++..
T Consensus 236 ~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~- 314 (363)
T 3dp7_A 236 ANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMAN- 314 (363)
T ss_dssp CCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSC-
T ss_pred ccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhC-
Confidence 999984 6654 9999999999999999999999999999999999999998876432110 001112233333332
Q ss_pred CCCccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEeC
Q 018366 319 GGGRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 319 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
.+++.+|.++|.++|+++||+++++.+.. .+.++|+++|
T Consensus 315 ~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 315 GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 36788999999999999999999998765 4588999875
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=1.9e-44 Score=337.50 Aligned_cols=324 Identities=23% Similarity=0.378 Sum_probs=276.3
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc
Q 018366 19 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER 98 (357)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 98 (357)
...+..+++++.+++.+++|.+++++|||+.|.+ ||.|++|||+++++ +++.++|||++|++.|++.+. +++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~---~~~ 85 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG---EKQ 85 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC---CC-
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe---CCC
Confidence 4567789999999999999999999999999976 69999999999999 999999999999999999963 345
Q ss_pred --ceecchhchhhhcCCCCCchhhhhhccCChhhH-HHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHh
Q 018366 99 --LYGLTPVSKYFVSNKDGVSLGHFMALPLDKVFM-ESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMF 175 (357)
Q Consensus 99 --~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (357)
.|++|+.+..+.... +.++++++.+...+..+ ..|.++.+.+++|.+++...+|.++|+++..+++....|..+|.
T Consensus 86 ~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~ 164 (374)
T 1qzz_A 86 GRPLRPTRLGMLLADGH-PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMS 164 (374)
T ss_dssp CCCCEECTTGGGGSTTC-TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCG
T ss_pred CeEEEEChHHHhhcCCC-cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHH
Confidence 899999988777544 45788888776544456 88999999999999998888888999999999999999999998
Q ss_pred hcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC
Q 018366 176 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD 248 (357)
Q Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~ 248 (357)
.........+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++|+++.+|+++
T Consensus 165 ~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 243 (374)
T 1qzz_A 165 CDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK 243 (374)
T ss_dssp GGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 887777778888887 777889999999999999999999999999999998888877642 479999999988
Q ss_pred CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee--ccCCCCCCCchhhhhhhhhhhhhhhcCCCccCC
Q 018366 249 SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS--IVPEIPEVSSSARETSLLDVLLMTRDGGGRERT 325 (357)
Q Consensus 249 ~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 325 (357)
++|.. |+|++.+++|+|++++..++|++++++|||||+++|.|. ..++.. .......+++.++... +++.++
T Consensus 244 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~ 318 (374)
T 1qzz_A 244 PLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA----DRFFSTLLDLRMLTFM-GGRVRT 318 (374)
T ss_dssp CCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHH-SCCCCC
T ss_pred cCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCC----CcchhhhcchHHHHhC-CCcCCC
Confidence 77775 999999999999999889999999999999999999998 665431 1223445676666554 788999
Q ss_pred HHHHHHHHHHcCCceeEEeecCCce-----eEEEEeC
Q 018366 326 KKEFTELAIAAGFKHINFASCVCNL-----YIMEFFK 357 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~~~~~-----~vie~~~ 357 (357)
.++|.++|+++||+++++.+.++.. ++|+++|
T Consensus 319 ~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 319 RDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 9999999999999999998887776 8999874
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=5.9e-44 Score=332.41 Aligned_cols=326 Identities=23% Similarity=0.381 Sum_probs=278.7
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC
Q 018366 17 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG 96 (357)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 96 (357)
+......++++++.+++.+++|.+++++|||+.|.+ ||.|++|||+++++ ++..++|||++|++.|++.+. +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~---~ 86 (360)
T 1tw3_A 15 PQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED---A 86 (360)
T ss_dssp --CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---E
T ss_pred CcccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec---C
Confidence 344567888999999999999999999999999976 69999999999999 999999999999999999963 3
Q ss_pred CcceecchhchhhhcCCCCCchhhhhhccCChh-hHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHh
Q 018366 97 ERLYGLTPVSKYFVSNKDGVSLGHFMALPLDKV-FMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMF 175 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (357)
++.|++|+.+..+..+. +.++++++.+...+. .+..|.+|.+.+++|.+++...+|.++|+++..+++....|...|.
T Consensus 87 ~g~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~ 165 (360)
T 1tw3_A 87 PGEFVPTEVGELLADDH-PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLA 165 (360)
T ss_dssp TTEEEECTTGGGGSTTS-TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHT
T ss_pred CCeEEeCHHHHHHhcCC-chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHH
Confidence 67899999988776543 457888877664333 5788999999999999888888888899998889999999999999
Q ss_pred hcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC
Q 018366 176 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD 248 (357)
Q Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~ 248 (357)
.......+.+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++. ++++++.+|+++
T Consensus 166 ~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 244 (360)
T 1tw3_A 166 CDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE 244 (360)
T ss_dssp TTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 888777778888887 777889999999999999999999999999999988788776542 479999999998
Q ss_pred CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec-cCCCCCCCchhhhhhhhhhhhhhhcCCCccCCH
Q 018366 249 SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI-VPEIPEVSSSARETSLLDVLLMTRDGGGRERTK 326 (357)
Q Consensus 249 ~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 326 (357)
++|.. |+|++.+++|+|+++++.++|++++++|||||++++.|.. .++... ..+...+++.|+... +++.+|.
T Consensus 245 ~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~t~ 319 (360)
T 1tw3_A 245 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF----NEQFTELDLRMLVFL-GGALRTR 319 (360)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC----SHHHHHHHHHHHHHH-SCCCCBH
T ss_pred CCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC----cchhhhccHHHhhhc-CCcCCCH
Confidence 77775 9999999999999998899999999999999999999987 554321 123345666666554 7889999
Q ss_pred HHHHHHHHHcCCceeEEeecCCc-----eeEEEEeC
Q 018366 327 KEFTELAIAAGFKHINFASCVCN-----LYIMEFFK 357 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~~~~-----~~vie~~~ 357 (357)
++|.++|+++||+++++.+.++. .++|+++|
T Consensus 320 ~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 320 EKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 99999999999999999887665 78999875
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=3.7e-43 Score=323.84 Aligned_cols=315 Identities=19% Similarity=0.246 Sum_probs=269.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 23 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
+.+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|++++ +++.|++
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~----~~~~y~~ 78 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTK----QAEGYRL 78 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEe----cCCEEec
Confidence 578999999999999999999999999997 69999999999999 99999999999999999985 2689999
Q ss_pred chhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcchhhH
Q 018366 103 TPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAM 182 (357)
Q Consensus 103 t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (357)
|+.+..++...++.++++++.+...+..+..|.+|.+++++|.+++. + |+++.++++....|...|........
T Consensus 79 t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (335)
T 2r3s_A 79 TSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPA 152 (335)
T ss_dssp CHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHH
T ss_pred CHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhH
Confidence 99995444444456788888776555678899999999999887664 2 77888899999999999988888777
Q ss_pred HHHHhhcccC--CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCC
Q 018366 183 ERILEHYEGF--QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~ 252 (357)
..+++.++ + ++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|+++ +.+.
T Consensus 153 ~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 231 (335)
T 2r3s_A 153 QLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGN 231 (335)
T ss_dssp HHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS
T ss_pred HHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC
Confidence 78888887 6 77789999999999999999999999999999998888777652 469999999998 6776
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
. |+|++.+++|+|++++..++|++++++|+|||+++++|...++....+ .....+++.|+....+++.+|.++|.+
T Consensus 232 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ 308 (335)
T 2r3s_A 232 DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYES 308 (335)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence 5 999999999999999999999999999999999999999876543222 234456666665544788999999999
Q ss_pred HHHHcCCceeEEeecCCceeEEEEe
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFF 356 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~ 356 (357)
+++++||+.+++.+..+..++++++
T Consensus 309 ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 309 MFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHCCCCeeeEEECCCCceeEEEe
Confidence 9999999999999887777776664
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=1.1e-42 Score=323.61 Aligned_cols=311 Identities=20% Similarity=0.347 Sum_probs=261.1
Q ss_pred hHHHHHHHHHHh-hhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC
Q 018366 19 EESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE 97 (357)
Q Consensus 19 ~~~~~~~~~~~~-~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 97 (357)
.+...++++++. +++.+++|++++++|||+.|.+ ||.|++|||+++++ +++.++|||++|++.|+|++. +
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~----~ 98 (359)
T 1x19_A 28 LNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE----D 98 (359)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----T
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee----C
Confidence 456677888885 8999999999999999999997 69999999999999 999999999999999999973 4
Q ss_pred cceecchhchhhhcCCCC---CchhhhhhccCChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcc---hHHHHH
Q 018366 98 RLYGLTPVSKYFVSNKDG---VSLGHFMALPLDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPG---FNETYH 171 (357)
Q Consensus 98 ~~y~~t~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~ 171 (357)
+.|++|+.+..++.++.+ .++++++.+. .+..+..|.+|.+++++|.+ |+++.++++ ....|.
T Consensus 99 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~~~~f~ 167 (359)
T 1x19_A 99 GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTREDNLYF 167 (359)
T ss_dssp TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHHHHHHH
T ss_pred CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHHHHHHH
Confidence 699999986655555555 5788777664 35678899999999998754 566778888 889999
Q ss_pred HHHhhcch-hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEE
Q 018366 172 KAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVG 243 (357)
Q Consensus 172 ~~~~~~~~-~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~ 243 (357)
.+|..... ...+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.
T Consensus 168 ~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 246 (359)
T 1x19_A 168 EEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIA 246 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999888 77788888887 77888999999999999999999999999999999888887764 24699999
Q ss_pred cCCCC-CCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 244 GNMFD-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 244 ~D~~~-~~p~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+|+++ +++.+|+|++.+++|+|+++++.++|++++++|||||+++|+|...++. ..+. ....+ .|+....+++
T Consensus 247 ~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~---~~~~~--~~~~~~~~g~ 320 (359)
T 1x19_A 247 VDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPN---FDYLS--HYILGAGMPF 320 (359)
T ss_dssp CCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCC---HHHHH--HHGGGGGSSC
T ss_pred CccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCch---HHHHH--HHHHhcCCCC
Confidence 99998 5666699999999999999889999999999999999999999987654 2211 11122 2332222466
Q ss_pred c----CCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 323 E----RTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 323 ~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
. ++.++|.++|+++||+++++.+.. ..++++++|
T Consensus 321 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 321 SVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp CCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred cccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 6 899999999999999999998877 788999886
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=1.1e-42 Score=322.75 Aligned_cols=312 Identities=14% Similarity=0.208 Sum_probs=257.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcce
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLY 100 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y 100 (357)
....+++++.+++.+++|++|+++|||+.|.+ |.|++|||+++|+ +++.++||||+|++.|++++. ++.|
T Consensus 24 ~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~--~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~----~~~y 93 (352)
T 3mcz_A 24 SVVDLVKLSDQYRQSAILHYAVADKLFDLTQT--GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE----GDAF 93 (352)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC--CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec----CCee
Confidence 33448999999999999999999999999976 9999999999999 999999999999999999963 4789
Q ss_pred ecchhchhhhcCCCCCchhhhhhccCChhhHHHhhhhHHHHhcCCCc-cccccCCChhhhcccCcchHHHHHHHHhhcch
Q 018366 101 GLTPVSKYFVSNKDGVSLGHFMALPLDKVFMESWLGLRDAVMEGGIP-FNRVHGMHIFEYASGNPGFNETYHKAMFNHST 179 (357)
Q Consensus 101 ~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (357)
.+|+.+..++.++.+.+++.++.+. ...+..|.+|.+.+++|.+. |.. ..++..+++....|..+|.....
T Consensus 94 ~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~~~~f~~~m~~~~~ 165 (352)
T 3mcz_A 94 RNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRARDAFNDAMVRLSQ 165 (352)
T ss_dssp EECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHHHHHHHHHHHhhhh
Confidence 9999999777666666777776543 34678899999999998754 222 12345778888889999987333
Q ss_pred hhHHHHHhhcccCCC-CceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCCC--
Q 018366 180 IAMERILEHYEGFQN-VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFDS-- 249 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~~-- 249 (357)
. +..+++.++ +++ ..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++++++.+|++++
T Consensus 166 ~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 166 P-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp H-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred h-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 2 347788787 666 789999999999999999999999999999998888776542 4799999999984
Q ss_pred -CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 250 -VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 250 -~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
.+.. |+|++.+++|+|+++++.++|++++++|||||+++|+|.+.++....+ .....+++.|+....+++.+|.+
T Consensus 244 ~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~ 320 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTP 320 (352)
T ss_dssp GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHH
T ss_pred cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHH
Confidence 5655 999999999999999999999999999999999999999887653322 23456777776654578899999
Q ss_pred HHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 328 EFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+|+++|+++||++++.. .+..+++.++|
T Consensus 321 e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 321 WIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 99999999999999843 35577777765
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.86 E-value=6.4e-21 Score=168.53 Aligned_cols=163 Identities=13% Similarity=0.201 Sum_probs=119.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC--CCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCCCEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEGDAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~D~i~~~~ 260 (357)
.++..+|||||||+|..+..+++.+ |+++++++|+ +.|++.|+++ .+|+++.+|+.+ +.+..|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 3567899999999999999999975 6789999999 8899887642 479999999988 665569999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhh-hhhhhhhh-------------hcCCCccCCH
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETS-LLDVLLMT-------------RDGGGRERTK 326 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~t~ 326 (357)
+||++++++...+|++++++|||||++++.|.....++... ..... ..++.... ...-....|.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 99999988888999999999999999999998776532110 00000 00100000 0000123588
Q ss_pred HHHHHHHHHcCCceeEEeecCCceeEEEEe
Q 018366 327 KEFTELAIAAGFKHINFASCVCNLYIMEFF 356 (357)
Q Consensus 327 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 356 (357)
+++.++|++|||+.++++...-++..+.++
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~ 255 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSLVAL 255 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEEEEE
Confidence 999999999999999986544344433343
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.84 E-value=9.7e-20 Score=158.53 Aligned_cols=171 Identities=14% Similarity=0.197 Sum_probs=126.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC-CE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~-D~ 255 (357)
..++..++...+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 44555554334668999999999999999999999999999999 777776654 2479999999988 55544 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh-hhh------------hhhhcCCCc
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL-DVL------------LMTRDGGGR 322 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~ 322 (357)
|++..++|++++++...+|++++++|||||++++.+...+...... ......+ ... .........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE--NLNKTIWRQYVENSGLTEEEIAAGYERSKLDK 190 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH--HHHHHHHHHHHHTSSCCHHHHHTTC----CCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhh--hHHHHHHHHHHHhcCCCHHHHHHHHHhccccc
Confidence 9999999999888888899999999999999999998765431100 0000000 000 000001345
Q ss_pred cCCHHHHHHHHHHcCCceeEEeecCCceeEEEE
Q 018366 323 ERTKKEFTELAIAAGFKHINFASCVCNLYIMEF 355 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~ 355 (357)
.+|.+++.++|++|||+.+++.....+.+++-.
T Consensus 191 ~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~ 223 (234)
T 3dtn_A 191 DIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFG 223 (234)
T ss_dssp CCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEE
T ss_pred ccCHHHHHHHHHHcCCCceeeeeeecceeEEEE
Confidence 578999999999999999999877666665443
No 19
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.79 E-value=5.9e-20 Score=157.87 Aligned_cols=169 Identities=14% Similarity=0.196 Sum_probs=120.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
..+++.++ .++. +|||+|||+|.++..+++. |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 45555555 4444 9999999999999999998 7889999998 7888777652 479999999988 66654
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++||+ ++...+|++++++|||||++++.+...+.................+......+...++.++|.+
T Consensus 111 ~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
T 3dlc_A 111 YADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQN 188 (219)
T ss_dssp CEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHH
T ss_pred cccEEEECchHhhc--cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHH
Confidence 999999999999 5567899999999999999999875443210000000000000000000001234458899999
Q ss_pred HHHHcCCceeEEeecCCceeEEEEe
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFF 356 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~ 356 (357)
+|+++||+.+++.....+.|++..+
T Consensus 189 ~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 189 VLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHcCCCeEEEEecCCceEEEEec
Confidence 9999999999999887777765543
No 20
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.79 E-value=3.3e-18 Score=147.27 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=120.7
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CCCCC-CEEEe
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SVPEG-DAILM 258 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~p~~-D~i~~ 258 (357)
.+++.+. ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 4555554 346679999999999999999987 568999998 7788777653 479999999988 55543 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh---hhh--hhhhcCCCccCCHHHHHHHH
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL---DVL--LMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~t~~e~~~ll 333 (357)
..++||+++++...+|++++++|||||++++.++..+... ......... .+. ..... ....++.+++.++|
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD---AYDKTVEAAKQRGFHQLANDLQ-TEYYTRIPVMQTIF 188 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHH---HHHHHHHHHHHTTCHHHHHHHH-HSCCCBHHHHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChH---HHHHHHHHHHhCCCccchhhcc-hhhcCCHHHHHHHH
Confidence 9999999888777799999999999999999987654311 000000000 000 00000 12345899999999
Q ss_pred HHcCCceeEEeecCCceeEEEEeC
Q 018366 334 IAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 334 ~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+++||+++.... .+..|++.+.|
T Consensus 189 ~~aGf~v~~~~~-~~~~w~~~~~~ 211 (220)
T 3hnr_A 189 ENNGFHVTFTRL-NHFVWVMEATK 211 (220)
T ss_dssp HHTTEEEEEEEC-SSSEEEEEEEE
T ss_pred HHCCCEEEEeec-cceEEEEeehh
Confidence 999998666544 57888887753
No 21
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.78 E-value=1.9e-18 Score=148.68 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=124.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~ 253 (357)
..+++.++ ..+..+|||+|||+|.++..+++.. |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 45666666 6677899999999999999999997 7889999998 7888777652 479999999987 55554
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++|+++ +...+|++++++|||||++++.+.......... .....++.+++.+
T Consensus 106 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 9999999999995 457999999999999999999987654421110 0123458999999
Q ss_pred HHHHcCCceeEEeecCCceeEEEEeC
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
+++++||++++........+.+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999988877777766654
No 22
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.77 E-value=3.5e-18 Score=151.37 Aligned_cols=155 Identities=17% Similarity=0.309 Sum_probs=122.1
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~~--D 254 (357)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 45666665 6677899999999999999999987 679999998 7788776653 689999999988 66554 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++..++||+++++...+|++++++|||||++++.+...+.... ....+...... . +...++.+++.++++
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~-~-~~~~~~~~~~~~~l~ 194 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN------WDDEFKEYVKQ-R-KYTLITVEEYADILT 194 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG------CCHHHHHHHHH-H-TCCCCCHHHHHHHHH
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc------chHHHHHHHhc-C-CCCCCCHHHHHHHHH
Confidence 999999999998888999999999999999999999986654110 11111111111 1 455779999999999
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
++||+++++....
T Consensus 195 ~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 195 ACNFKNVVSKDLS 207 (266)
T ss_dssp HTTCEEEEEEECH
T ss_pred HcCCeEEEEEeCC
Confidence 9999999887653
No 23
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.77 E-value=7.5e-18 Score=147.20 Aligned_cols=164 Identities=13% Similarity=0.293 Sum_probs=121.0
Q ss_pred HHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCC
Q 018366 169 TYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMF 247 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~ 247 (357)
.|..............+...++.+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~ 91 (240)
T 3dli_A 16 LFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAI 91 (240)
T ss_dssp HHHHHHTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHH
Confidence 33333333333334445555554556789999999999999999998 457899998 8888888755 899999987
Q ss_pred C---CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 248 D---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 248 ~---~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+ +++.+ |+|++..++||+++++...+|++++++|||||++++..+.... . ......... ..+..
T Consensus 92 ~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~----~~~~~~~~~--~~~~~ 160 (240)
T 3dli_A 92 EYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-----L----YSLINFYID--PTHKK 160 (240)
T ss_dssp HHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-----H----HHHHHHTTS--TTCCS
T ss_pred HHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-----h----HHHHHHhcC--ccccc
Confidence 6 55544 9999999999999888899999999999999999997764321 1 111111111 12445
Q ss_pred cCCHHHHHHHHHHcCCceeEEeecC
Q 018366 323 ERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
.++.+++.++++++||+++++....
T Consensus 161 ~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 161 PVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred cCCHHHHHHHHHHCCCeEEEEEEec
Confidence 6799999999999999998886654
No 24
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.77 E-value=4.5e-19 Score=153.38 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=118.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCC-C-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPE-G- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~-~- 253 (357)
..+.+.++ +..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +.+. .
T Consensus 30 ~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (227)
T 1ve3_A 30 PLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTF 104 (227)
T ss_dssp HHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCE
T ss_pred HHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcE
Confidence 34444443 467999999999999999999877 7888888 8888777652 679999999988 5554 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh--cC------------
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR--DG------------ 319 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------ 319 (357)
|+|++..++|++..++..++|++++++|||||++++.++..+...... ..........++... ..
T Consensus 105 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (227)
T 1ve3_A 105 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSE 183 (227)
T ss_dssp EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC---
T ss_pred EEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccc
Confidence 999999997777778889999999999999999999877532110000 000000000000000 00
Q ss_pred ------CCccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 320 ------GGRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 320 ------~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
....++ .++.++|+++||+.+++.......++|+++|
T Consensus 184 ~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 184 QDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp --CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 011112 4899999999999999999877788999875
No 25
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.76 E-value=4e-18 Score=150.72 Aligned_cols=155 Identities=16% Similarity=0.298 Sum_probs=116.9
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~ 252 (357)
....+++.++ ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. +++.++.+|+.+ ++++
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3456677666 56778999999999999999999875 8899998 8888877642 579999999988 6665
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh-hhhcCCCccCCHHHH
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL-MTRDGGGRERTKKEF 329 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~ 329 (357)
+ |+|++..++||+++ ...+|++++++|||||++++.+...+..+ . ...++.... .....+...++.++|
T Consensus 102 ~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPEND---A---FDVFYNYVEKERDYSHHRAWKKSDW 173 (260)
T ss_dssp TCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred CCEEEEEEhhhhHhcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCH---H---HHHHHHHHHHhcCccccCCCCHHHH
Confidence 4 99999999999964 46999999999999999999988665421 1 111111111 111113456799999
Q ss_pred HHHHHHcCCceeEEeec
Q 018366 330 TELAIAAGFKHINFASC 346 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~~~ 346 (357)
.++|+++||+++.+...
T Consensus 174 ~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 174 LKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEEe
Confidence 99999999998877554
No 26
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.76 E-value=8.6e-18 Score=144.29 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=113.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCCCCCCC--CEEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFDSVPEG--DAIL 257 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~~~p~~--D~i~ 257 (357)
..+++.+....+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+..+.+ |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 345555543456679999999999999999998 568999998 8888887653 57999999998864443 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC------CccCCHHHHHH
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG------GRERTKKEFTE 331 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~ 331 (357)
+..++||+++++...+|++++++|||||++++.+...+......... .............+ ...++.+++.+
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDD--SEPEVAVRRTLQDGRSFRIVKVFRSPAELTE 190 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhh--cccccceeeecCCcchhhHhhcCCCHHHHHH
Confidence 99999999988789999999999999999999987653321000000 00000000000001 22459999999
Q ss_pred HHHHcCCceeEEeec
Q 018366 332 LAIAAGFKHINFASC 346 (357)
Q Consensus 332 ll~~aGf~~~~~~~~ 346 (357)
+|+++||++......
T Consensus 191 ~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 191 RLTALGWSCSVDEVH 205 (218)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCEEEeeecc
Confidence 999999995544443
No 27
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.74 E-value=1.8e-17 Score=148.70 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=120.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~- 253 (357)
..+++.++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV 130 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCe
Confidence 45666666 66778999999999999999997764 49999998 7777776542 479999999865 3343
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCC-----CCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPE-----VSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
|+|++..++||+++++...+|++++++|||||++++.+...+.... .+.........+......++++..++.++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 210 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 210 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence 9999999999998778899999999999999999999987644210 00000000111111112234677889999
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
+.++++++||+++++...
T Consensus 211 ~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 211 VQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHhCCcEEEEEEeC
Confidence 999999999999988764
No 28
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.74 E-value=2.3e-17 Score=146.78 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=119.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 45666666 6677899999999999999999987 679999998 7777766542 479999999988 66654
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++||+++ ...+|++++++|||||++++.+......... ......+..... ..+...++.+++.+
T Consensus 129 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~ 201 (273)
T 3bus_A 129 SFDAVWALESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEG----AKKEAVDAFRAG-GGVLSLGGIDEYES 201 (273)
T ss_dssp CEEEEEEESCTTTSSC--HHHHHHHHHTTEEEEEEEEEEEEEESSCCCH----HHHHHHHHHHHH-HTCCCCCCHHHHHH
T ss_pred CccEEEEechhhhCCC--HHHHHHHHHHHcCCCeEEEEEEeeccCCCCh----hHHHHHHHHHhh-cCccCCCCHHHHHH
Confidence 99999999999954 4799999999999999999999876432111 011111111111 23567789999999
Q ss_pred HHHHcCCceeEEeecC
Q 018366 332 LAIAAGFKHINFASCV 347 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~ 347 (357)
+++++||+++++....
T Consensus 202 ~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 202 DVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEECc
Confidence 9999999998887653
No 29
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.74 E-value=4.6e-17 Score=147.22 Aligned_cols=162 Identities=17% Similarity=0.270 Sum_probs=122.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~- 253 (357)
..+++.++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+. +..
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f 138 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV 138 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence 45667666 66778999999999999999999976 78999998 8888777642 3799999998765 444
Q ss_pred CEEEeccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCch-----hhhhhhhhhhhhhhcCCC
Q 018366 254 DAILMKWILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSS-----ARETSLLDVLLMTRDGGG 321 (357)
Q Consensus 254 D~i~~~~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 321 (357)
|+|++..++||+++ ++...+|++++++|||||++++.+...+........ .....+.++.....++++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 218 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 218 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence 99999999999944 667899999999999999999998876542100000 000001122222234577
Q ss_pred ccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 322 RERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
..++.+++.++++++||+++++...+
T Consensus 219 ~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 219 RLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 88999999999999999999887654
No 30
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.74 E-value=2.1e-17 Score=144.31 Aligned_cols=154 Identities=16% Similarity=0.312 Sum_probs=116.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~ 253 (357)
...+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 345666666 67788999999999999999999875 7888898 7788776542 579999999987 56543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhh-hhhhcCCCccCCHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVL-LMTRDGGGRERTKKEFT 330 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~e~~ 330 (357)
|+|++..++||++ +...+|++++++|||||++++.+...+.. .. ...+.... ......+...++.++|.
T Consensus 87 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 87 SFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPED---PV---LDEFVNHLNRLRDPSHVRESSLSEWQ 158 (239)
T ss_dssp CEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSS---HH---HHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred cEEEEEECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCCC---hh---HHHHHHHHHHhccccccCCCCHHHHH
Confidence 9999999999995 45799999999999999999998876542 11 11111111 11111234567999999
Q ss_pred HHHHHcCCceeEEeec
Q 018366 331 ELAIAAGFKHINFASC 346 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~ 346 (357)
++|+++||+++++...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998877654
No 31
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.73 E-value=1.3e-17 Score=146.79 Aligned_cols=149 Identities=17% Similarity=0.283 Sum_probs=116.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCCC--C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~~--D 254 (357)
..+++.++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45566665 5567899999999999999999886 457899998 7787776542 579999999887 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++.+++||+++++...+|++++++|||||++++.+........ ..+ . ......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~----~-~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVD----K-EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEE----T-TTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eec----c-cCCcccCCHHHHHHHHH
Confidence 999999999999888999999999999999999999875433110 000 0 11334579999999999
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999886654
No 32
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.73 E-value=1.3e-17 Score=147.61 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=115.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCC-CCCCC-CEEEecc-ccccCCh-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFD-SVPEG-DAILMKW-ILHCWDD- 267 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~p~~-D~i~~~~-~lh~~~~- 267 (357)
+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+.. |+|++.. ++||+++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~ 127 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQ 127 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHH
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCH
Confidence 557999999999999999998854 7888898 888888765 3589999999988 55444 9999998 9999965
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchh---------hh-----------hhhhhhhhhhhcCC-------
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSA---------RE-----------TSLLDVLLMTRDGG------- 320 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~---------~~-----------~~~~~~~~~~~~~~------- 320 (357)
++...+|++++++|||||++++.+...+..-...... .. ...++..+.....+
T Consensus 128 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (263)
T 3pfg_A 128 AELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHE 207 (263)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEE
Confidence 5677999999999999999999654333311000000 00 00001111000001
Q ss_pred ----CccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 321 ----GRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 321 ----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+.+|.++|.++|+++||+++++........++.++|
T Consensus 208 ~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 208 ESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 3356899999999999999999877666666665553
No 33
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.73 E-value=4.9e-17 Score=143.86 Aligned_cols=151 Identities=12% Similarity=0.161 Sum_probs=115.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEe
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILM 258 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~ 258 (357)
..+++.++ ..+..+|||||||+|.++..+++ |+.+++++|+ +.+++.+++..+++++.+|+.+ +++.+ |+|++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 45666665 56778999999999999999998 6789999999 8899998887799999999987 66543 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
.+++||+ ++...+|++++++|| ||++++.+...+..... +....+...... . +...++.+++. +|+++||
T Consensus 101 ~~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~-~~~~~~~~~~~-~l~~aGF 170 (261)
T 3ege_A 101 ILAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRI----WLYDYFPFLWED-A-LRFLPLDEQIN-LLQENTK 170 (261)
T ss_dssp ESCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCC----GGGGTCHHHHHH-H-HTSCCHHHHHH-HHHHHHC
T ss_pred cchHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHH----HHHHHHHHHhhh-h-hhhCCCHHHHH-HHHHcCC
Confidence 9999999 556799999999999 99999988754332111 000111111111 1 34456788899 9999999
Q ss_pred ceeEEeec
Q 018366 339 KHINFASC 346 (357)
Q Consensus 339 ~~~~~~~~ 346 (357)
+.+++...
T Consensus 171 ~~v~~~~~ 178 (261)
T 3ege_A 171 RRVEAIPF 178 (261)
T ss_dssp SEEEEEEC
T ss_pred CceeEEEe
Confidence 98887654
No 34
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.72 E-value=2.2e-17 Score=146.58 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=117.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~- 253 (357)
.++..++.+.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 45555544567789999999999999999998 7889999998 7888776642 569999999987 55544
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++..++|+++ ...+|++++++|||||++++.+.......... .....+... ....++.+++.++
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMDA---YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 9999999999983 46899999999999999999998754432111 112222111 2356789999999
Q ss_pred HHHcCCceeEEeecC
Q 018366 333 AIAAGFKHINFASCV 347 (357)
Q Consensus 333 l~~aGf~~~~~~~~~ 347 (357)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999987765
No 35
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.72 E-value=3e-17 Score=144.72 Aligned_cols=152 Identities=13% Similarity=0.114 Sum_probs=116.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
..++..+..+.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 345565544566789999999999999999999986 8999998 7788776542 459999999977 55543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|+|++..++||++ ...+|++++++|||||++++.+.......... .....+... ....++.+++.+
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~ 181 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCID 181 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHHH
Confidence 9999999999983 46899999999999999999997654422111 112222221 233578999999
Q ss_pred HHHHcCCceeEEeecC
Q 018366 332 LAIAAGFKHINFASCV 347 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~ 347 (357)
+|+++||++++....+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999987665
No 36
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.72 E-value=3.3e-17 Score=147.67 Aligned_cols=153 Identities=14% Similarity=0.230 Sum_probs=116.9
Q ss_pred HHHHhhc---ccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CC
Q 018366 183 ERILEHY---EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SV 250 (357)
Q Consensus 183 ~~i~~~l---~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~ 250 (357)
..+++.+ ..+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ ++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence 4566666 126677899999999999999999986 468999998 7787776542 579999999988 66
Q ss_pred CCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 251 PEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 251 p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
+.+ |+|++..++||+++ ...+|++++++|||||++++.++......... .....+ ... . .....+.++
T Consensus 147 ~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~---~~~-~-~~~~~~~~~ 216 (297)
T 2o57_A 147 EDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPIL---DRI-K-LHDMGSLGL 216 (297)
T ss_dssp CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHH---HHH-T-CSSCCCHHH
T ss_pred CCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH---HHHHHH---HHh-c-CCCCCCHHH
Confidence 654 99999999999965 67999999999999999999998765432111 111111 111 1 234568999
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
+.++|+++||+++++...
T Consensus 217 ~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 217 YRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHCCCeEEEEEEC
Confidence 999999999999988664
No 37
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.72 E-value=6.4e-17 Score=146.96 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=121.7
Q ss_pred HhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcC
Q 018366 174 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGN 245 (357)
Q Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D 245 (357)
+..........+++.++.+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 3344444445667766545677899999999999999999985 578999998 8888777642 479999999
Q ss_pred CCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCc
Q 018366 246 MFD-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGR 322 (357)
Q Consensus 246 ~~~-~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (357)
+.+ +++.+ |+|++..++|+++ ...+|++++++|||||++++.+........... .......... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhhh--cCC
Confidence 988 66644 9999999999994 679999999999999999999987655321111 1111111111 224
Q ss_pred cCCHHHHHHHHHHcCCceeEEeec
Q 018366 323 ERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
.++.++|.++|+++||+++++...
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeC
Confidence 678999999999999999988764
No 38
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.72 E-value=2.2e-17 Score=145.45 Aligned_cols=153 Identities=10% Similarity=0.087 Sum_probs=116.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~ 252 (357)
...++..++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 345666666 6677899999999999999999987 568999998 7888777542 479999999988 4433
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
. |+|++..++|+++ +..++|++++++|||||++++.+......+... . ....... ......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATE---E---IAQACGV--SSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---H---HHHTTTC--SCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcccCCCChH---H---HHHHHhc--ccccccCCHHHHHH
Confidence 3 9999999999995 457999999999999999999998765432111 0 1110000 11235679999999
Q ss_pred HHHHcCCceeEEeec
Q 018366 332 LAIAAGFKHINFASC 346 (357)
Q Consensus 332 ll~~aGf~~~~~~~~ 346 (357)
+|+++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887553
No 39
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.72 E-value=2e-17 Score=147.53 Aligned_cols=153 Identities=15% Similarity=0.288 Sum_probs=113.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--CEEEeccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG--DAILMKWI 261 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~--D~i~~~~~ 261 (357)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56778999999999999999999999999999998 7788777542 579999999987 55544 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhh-hhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDV-LLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
+|++++. ..+|++++++|||||++++.+.........+........+.. .......++..++..++.++|+++||++
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 192 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence 9999654 589999999999999999988643221000000111111111 1111113566678899999999999999
Q ss_pred eEEeec
Q 018366 341 INFASC 346 (357)
Q Consensus 341 ~~~~~~ 346 (357)
+++...
T Consensus 193 v~~~~~ 198 (276)
T 3mgg_A 193 IRVEPR 198 (276)
T ss_dssp EEEEEE
T ss_pred EEEeeE
Confidence 988654
No 40
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.71 E-value=1.2e-16 Score=145.45 Aligned_cols=161 Identities=17% Similarity=0.287 Sum_probs=120.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~- 253 (357)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ .|..
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPV 156 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCC
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCc
Confidence 45666666 6677899999999999999999986 568999998 7888777642 469999999865 2344
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCC----chh-hhhhhhhhhhhhhcCCCccCCHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVS----SSA-RETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
|+|++..++||+++++...+|+++.++|||||++++.+...+...... ... ......+......++++..++.++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 236 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 236 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHH
Confidence 999999999999888889999999999999999999988765421000 000 000011221112234677889999
Q ss_pred HHHHHHHcCCceeEEeec
Q 018366 329 FTELAIAAGFKHINFASC 346 (357)
Q Consensus 329 ~~~ll~~aGf~~~~~~~~ 346 (357)
+.++++++||+++++...
T Consensus 237 ~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 237 MVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHhCCCEEEEEEec
Confidence 999999999999887654
No 41
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.71 E-value=4.1e-17 Score=147.77 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=117.6
Q ss_pred CCCCceEEEEcCCcchHHHHHH-hhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~i~~~~ 260 (357)
+.+..+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999986 6788999999999 8888777642 359999999988 55544 9999999
Q ss_pred ccccCChh-HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCch-h--hh----hhhhhhhhhhh-cCC-CccCCHHHHH
Q 018366 261 ILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSS-A--RE----TSLLDVLLMTR-DGG-GRERTKKEFT 330 (357)
Q Consensus 261 ~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~-~--~~----~~~~~~~~~~~-~~~-~~~~t~~e~~ 330 (357)
++||+++. ....+|++++++|||||++++.+...+........ . .. .......+... ..+ ...++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 99999654 44579999999999999999988765432211100 0 00 00000111111 101 1447999999
Q ss_pred HHHHHcCCceeEEeecCCce-eEEEEeC
Q 018366 331 ELAIAAGFKHINFASCVCNL-YIMEFFK 357 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~~~~~-~vie~~~ 357 (357)
++|+++||+++++....... ..+.++|
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999998755443 3555543
No 42
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.71 E-value=1.7e-17 Score=141.02 Aligned_cols=137 Identities=17% Similarity=0.107 Sum_probs=110.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCC-CCCCC--CEEEeccccccCChhH
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDH 269 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~ 269 (357)
..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+.+ |+|++.+++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 579999999999999999998 458899998 888888776 4689999999987 55543 9999999999998788
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
...+|++++++|||||++++.+...+... .+.. . ......++.+++.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~~~-------~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------PMYH-------P-VATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE------EECC-------S-SSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh------hhhc-------h-hhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 89999999999999999999886543310 0000 0 013345789999999999999999987665
No 43
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.70 E-value=2.2e-17 Score=136.22 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=115.5
Q ss_pred HHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCCCCCCC--CEEEecc
Q 018366 185 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDSVPEG--DAILMKW 260 (357)
Q Consensus 185 i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~p~~--D~i~~~~ 260 (357)
+++.++ ..+..+|||+|||+|.++..+++... +++++|+ +.+++.+++ .+++++..+| .+++.+ |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 444455 56678999999999999999999874 8899998 778877765 4789999999 444443 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
++|+++ +...+|+++++.|||||++++.+.........+. ....++.+++.++|+ ||++
T Consensus 84 ~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPP-----------------LSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC-----------------GGGCCCHHHHHHHTT--TEEE
T ss_pred chhccc--CHHHHHHHHHHhcCCCCEEEEEEcCccccccCch-----------------HhhhcCHHHHHHHHh--CcEE
Confidence 999995 4579999999999999999999876544221110 122368999999999 9999
Q ss_pred eEEeecCCceeEEEEe
Q 018366 341 INFASCVCNLYIMEFF 356 (357)
Q Consensus 341 ~~~~~~~~~~~vie~~ 356 (357)
++........+.+.+.
T Consensus 143 ~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEECSSTTEEEEEEE
T ss_pred EEccCCCCceEEEEEe
Confidence 9999988777766654
No 44
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.70 E-value=5.1e-17 Score=142.22 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=105.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCCCCCCC--CEEEeccccccCCh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFDSVPEG--DAILMKWILHCWDD 267 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~~~p~~--D~i~~~~~lh~~~~ 267 (357)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+..+++ |+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999999876 5788887 7888777653 27999999998754443 99999999999964
Q ss_pred hHHHHHHHHHH-HhCCCCCEEEEEeeccCCCCCCCchhhhhhhhh-------hh-hhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 268 DHCLRILKNCY-KAIPDNGKVIVMNSIVPEIPEVSSSARETSLLD-------VL-LMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 268 ~~~~~~L~~~~-~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
...+|++++ ++|||||++++.++..... ......... +. ......+...++.+++.++|+++||
T Consensus 119 --~~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 119 --PVALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp --HHHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 479999999 9999999999987643210 000000000 00 0001124456899999999999999
Q ss_pred ceeEEee
Q 018366 339 KHINFAS 345 (357)
Q Consensus 339 ~~~~~~~ 345 (357)
+++++..
T Consensus 192 ~~~~~~~ 198 (250)
T 2p7i_A 192 QVTYRSG 198 (250)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 9988754
No 45
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.70 E-value=4.6e-17 Score=139.27 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=108.7
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC-CEEEeccccccCChh
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG-DAILMKWILHCWDDD 268 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~~ 268 (357)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+ +.+.. |+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345679999999999999999987 568999998 8888887765578888999877 42233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC-CceeEEeec
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG-FKHINFASC 346 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~~ 346 (357)
+...+|++++++|||||++++......... .. .. ......++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----~~----~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEG----RD----KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCE----EC----TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccc----cc----cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 899999999999999999999765432210 00 00 01123468999999999999 999988654
No 46
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.70 E-value=6.9e-17 Score=144.74 Aligned_cols=161 Identities=14% Similarity=0.177 Sum_probs=114.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D 254 (357)
.+++.+....+..+|||||||+|.++..+++.+|+ .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 44544433567789999999999999999999985 89999998 7777766542 379999999988 55544 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc-----C---CCCCCCchhhhhhhhhhhhhh-hcCCCccCC
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV-----P---EIPEVSSSARETSLLDVLLMT-RDGGGRERT 325 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~-----~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t 325 (357)
+|++..++|++++ ...+|++++++|||||++++.++.. . ++...+.......+....... ...+....+
T Consensus 92 ~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCC--HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 9999999999954 4699999999999999999998751 1 101000000011111111100 012455667
Q ss_pred HHHHHHHHHHcCCceeEEeec
Q 018366 326 KKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~~~~ 346 (357)
..++.++|+++||+.+++...
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEc
Confidence 789999999999999877443
No 47
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.70 E-value=5e-17 Score=138.31 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=107.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------------------CCceEEEc
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGG 244 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~~~ 244 (357)
.++..+. ..+..+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. .+++++.+
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 4445454 456789999999999999999997 468999998 8888877542 47999999
Q ss_pred CCCC-CCCC--C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCC
Q 018366 245 NMFD-SVPE--G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGG 320 (357)
Q Consensus 245 D~~~-~~p~--~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
|+.+ +.+. . |+|++..++|++++++..+++++++++|||||+++++....+... . ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---------------~---~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---------------L---EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---------------S---SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc---------------c---CCC
Confidence 9988 4432 3 999999999999988888999999999999999665544332110 0 001
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
....+.+++.+++++ ||+++.+...
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 122589999999998 9998776554
No 48
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.70 E-value=5.7e-17 Score=141.24 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=115.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC-CEEEe-ccccccCCh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG-DAILM-KWILHCWDD 267 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~-D~i~~-~~~lh~~~~ 267 (357)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 3567999999999999999999876 7888898 8888887653 679999999987 44444 99995 559999854
Q ss_pred -hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCch-hh-------------------hhhhhhhhhhhhcCC------
Q 018366 268 -DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSS-AR-------------------ETSLLDVLLMTRDGG------ 320 (357)
Q Consensus 268 -~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~------ 320 (357)
++...+|++++++|||||++++.+...++....... .. ......+.+.....+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 677899999999999999999977654432100000 00 000000101100001
Q ss_pred -----CccCCHHHHHHHHHHcCCceeEEeecCCceeEEEEeC
Q 018366 321 -----GRERTKKEFTELAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 321 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+.+|.++|.++|+++||+++.+....+...++.++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 1356999999999999998777766556667777764
No 49
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.70 E-value=2.3e-16 Score=140.36 Aligned_cols=150 Identities=17% Similarity=0.277 Sum_probs=113.1
Q ss_pred HHHhhcccCCCCceEEEEcCCc---chHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCCC------
Q 018366 184 RILEHYEGFQNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFDS------ 249 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~------ 249 (357)
.+++.+....+..+|||||||+ |.++..+.+.+|+.+++++|+ |.|++.+++ .++++++.+|+.++
T Consensus 67 ~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~ 146 (274)
T 2qe6_A 67 RGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNH 146 (274)
T ss_dssp HHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHS
T ss_pred HHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhcc
Confidence 3444443123457999999999 999888888899999999999 889888765 26899999999762
Q ss_pred ------CC--CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCC
Q 018366 250 ------VP--EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGG 321 (357)
Q Consensus 250 ------~p--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (357)
++ ..|+|++..+|||+++++...+|++++++|||||+|++.+...+. ... .....+.+..... ..
T Consensus 147 ~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~-~~ 219 (274)
T 2qe6_A 147 PDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENLG-EG 219 (274)
T ss_dssp HHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHHS-CC
T ss_pred chhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcCC-CC
Confidence 22 239999999999999888899999999999999999999976532 111 1112222222212 45
Q ss_pred ccCCHHHHHHHHHHcCCceeE
Q 018366 322 RERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~ 342 (357)
..+|.+++.++| +||++++
T Consensus 220 ~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 220 WARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp CCBCHHHHHHTT--TTCEECT
T ss_pred ccCCHHHHHHHh--CCCeEcc
Confidence 678999999999 5998775
No 50
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.69 E-value=3e-16 Score=136.94 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=108.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEEEeccccccCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAILMKWILHCWD 266 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~ 266 (357)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++.+++||++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 5679999999999999999998 568899998 7888877654 679999999988 56544 9999999999994
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
+...+|++++++|+|||++++.+....... ... .... .... ......++.+++.++++++||++++....
T Consensus 131 --~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~~~---~~~~-~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 131 --EPLRALNEIKRVLKSDGYACIAILGPTAKP---REN---SYPR-LYGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEECTTCGG---GGG---GGGG-GGTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --CHHHHHHHHHHHhCCCeEEEEEEcCCcchh---hhh---hhhh-hccc-cccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 456899999999999999999886443211 001 1111 1111 11345579999999999999999987643
No 51
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.69 E-value=9e-17 Score=145.06 Aligned_cols=173 Identities=9% Similarity=0.099 Sum_probs=119.1
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCC-
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFD- 248 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~- 248 (357)
.....+++.++ . +..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+
T Consensus 70 ~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 70 SEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 34456666665 3 3349999999999999999988 467899998 8888877652 579999999998
Q ss_pred CCCCC-CEEEec-cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCC--Cchhhhh--------hh-------
Q 018366 249 SVPEG-DAILMK-WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEV--SSSARET--------SL------- 309 (357)
Q Consensus 249 ~~p~~-D~i~~~-~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~--~~~~~~~--------~~------- 309 (357)
+.+.. |+|++. .++|++++++...+|++++++|||||+|++.....+..... .....+. ..
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 55544 988864 77888887788999999999999999999977654321000 0000000 00
Q ss_pred --hhhhhhh----------hcCCCccCCHHHHHHHHHHcCCceeEEeecC------CceeEEEEe
Q 018366 310 --LDVLLMT----------RDGGGRERTKKEFTELAIAAGFKHINFASCV------CNLYIMEFF 356 (357)
Q Consensus 310 --~~~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~ 356 (357)
..+.+.. .....+.+|.+++.++|+++||+++++.+.. ....++|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0000000 0001224699999999999999999998775 224577664
No 52
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.69 E-value=3.6e-17 Score=142.94 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=110.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC--CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG--DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~--D~i~~~~~lh 263 (357)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 56899999999999999999887 558999998 7888777642 248899999877 45543 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
|+++++...+|++++++|||||++++.+...... . .++ . ..+...++.++|.++|+++||++++.
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~----~-~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILD----D-VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEE----T-TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eec----c-cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998888899999999999999999998866431 0 000 0 01333468999999999999999988
Q ss_pred eecC
Q 018366 344 ASCV 347 (357)
Q Consensus 344 ~~~~ 347 (357)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7654
No 53
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.68 E-value=2.4e-16 Score=135.52 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=107.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcCCCC-CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFD-SV 250 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~ 250 (357)
.+.+.+. ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. .+++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 3444444 34567999999999999999999998889999998 7888877652 179999999865 33
Q ss_pred CC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 251 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 251 p~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
+. . |+|++..++||+++++..++|++++++|||||.+++..... .+.... ......... ......++.++
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~~~~~~------~~~~~~~~~-~~~~~~~~~~~ 170 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKE-YNFHYG------NLFEGNLRH-RDHRFEWTRKE 170 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGG-GGGCCC------CT-----GG-GCCTTSBCHHH
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchh-hhhhhc------ccCcccccc-cCceeeecHHH
Confidence 33 3 99999999999988888999999999999999666544321 110000 000000111 11334468999
Q ss_pred HH----HHHHHcCCceeEE
Q 018366 329 FT----ELAIAAGFKHINF 343 (357)
Q Consensus 329 ~~----~ll~~aGf~~~~~ 343 (357)
+. ++++++||++...
T Consensus 171 l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 171 FQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEE
Confidence 98 7889999976443
No 54
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.68 E-value=2.6e-15 Score=139.59 Aligned_cols=215 Identities=10% Similarity=0.006 Sum_probs=140.4
Q ss_pred ChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCCCCCchhhhhhc
Q 018366 45 GVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNKDGVSLGHFMAL 124 (357)
Q Consensus 45 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~ 124 (357)
|+|..| + +|.|+.+||.++++ +++.+++||+.|.+.|+++. + ++ |++++.+..++...+..+..+.+..
T Consensus 47 ~ll~~L-~-~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~---~-~~-~~lt~~~~~~l~~~~~~~~~~~~~~ 115 (373)
T 2qm3_A 47 NVLSAV-L-ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTF---E-DG-VKLTEKGEELVAEYGIGKRYDFTCP 115 (373)
T ss_dssp HHHHHH-H-HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC---S-SS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred HHHHHh-c-CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEE---C-CC-EEECHHHHHHHHhcCccccccccch
Confidence 789999 5 48999999999999 99999999999999999985 2 24 9999987755543221111111100
Q ss_pred c------CChhhHHHhhhhHHHHhcCCCccccccCCChhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCCceE
Q 018366 125 P------LDKVFMESWLGLRDAVMEGGIPFNRVHGMHIFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERL 198 (357)
Q Consensus 125 ~------~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v 198 (357)
. ....+...|..+.+.++....+. ..++. ....+ ........ .... .. ..+..+|
T Consensus 116 ~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~-----~~~~~--~~~~~~~l---------~~~~-~~-~~~~~~V 176 (373)
T 2qm3_A 116 HCQGKTVDLQAFADLLEQFREIVKDRPEPL-HEFDQ-----AYVTP--ETTVARVI---------LMHT-RG-DLENKDI 176 (373)
T ss_dssp --------CGGGHHHHHHHHHHHTTCCCCC-GGGTC-----CCBCH--HHHHHHHH---------HHHH-TT-CSTTCEE
T ss_pred hhcCCCcchhhhHHHHHHHHHHHhcCCccc-hhcCC-----eecCH--HHHHHHHH---------HHhh-cC-CCCCCEE
Confidence 0 00111224455666665432221 11110 00011 11111100 0111 11 2245799
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC----C-CEEEeccccccCC
Q 018366 199 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE----G-DAILMKWILHCWD 266 (357)
Q Consensus 199 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~----~-D~i~~~~~lh~~~ 266 (357)
||+| |+|.++..++...|+.+++++|+ +.+++.+++. .+++++.+|+.+++|. . |+|++...++..
T Consensus 177 LDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~- 254 (373)
T 2qm3_A 177 FVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE- 254 (373)
T ss_dssp EEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-
T ss_pred EEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH-
Confidence 9999 99999999999988889999999 8888887653 3799999999885442 3 999998877654
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
....+|+++.++|||||++++++..
T Consensus 255 --~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 255 --AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp --HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred --HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 3579999999999999976555543
No 55
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.68 E-value=1.5e-16 Score=138.48 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=106.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKWILHC 264 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~~lh~ 264 (357)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999876 5678999998 7788777542 3599999999884344 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
+++++...+|++++++|||||++++.+......... ....++.+++.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 998889999999999999999999988654321110 1122589999999999999999887
Q ss_pred ecC
Q 018366 345 SCV 347 (357)
Q Consensus 345 ~~~ 347 (357)
...
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 654
No 56
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.68 E-value=2.1e-16 Score=135.78 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=106.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcCCCC-CC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFD-SV 250 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~ 250 (357)
.+.+.++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .+++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (217)
T 3jwh_A 20 GVVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK 98 (217)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred HHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence 3444444 34567999999999999999999988889999998 7888777542 279999999865 33
Q ss_pred CC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHH
Q 018366 251 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKE 328 (357)
Q Consensus 251 p~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 328 (357)
+. . |+|++..++||+++++...+|++++++|||||.+++....... ..+.......+.. ......++.++
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~ 170 (217)
T 3jwh_A 99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKFANLPAGKLRH-KDHRFEWTRSQ 170 (217)
T ss_dssp GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHTC------------CCSCBCHHH
T ss_pred cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhhcccccccccc-cccccccCHHH
Confidence 32 3 9999999999998888899999999999999977765542100 0000000000110 11334468999
Q ss_pred HH----HHHHHcCCceeE
Q 018366 329 FT----ELAIAAGFKHIN 342 (357)
Q Consensus 329 ~~----~ll~~aGf~~~~ 342 (357)
+. ++++++||+++.
T Consensus 171 l~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 171 FQNWANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHHHHSSEEEEE
T ss_pred HHHHHHHHHHHcCceEEE
Confidence 98 888999998644
No 57
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.68 E-value=1.8e-16 Score=148.03 Aligned_cols=144 Identities=18% Similarity=0.301 Sum_probs=111.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC--------------CCceEEEcCCCC-------C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFD-------S 249 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~-------~ 249 (357)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356799999999999999999987 7889999999 8888877653 589999999987 4
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 250 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 250 ~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
++.+ |+|++..++|++++ ...+|++++++|||||+|++.+...+..... .. ......... .....++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~~--~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSE----AA--QQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCH----HH--HHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCH----hH--hhhHHHhhc-ccccCCCHH
Confidence 5544 99999999999954 5799999999999999999998766532110 00 111111111 134567899
Q ss_pred HHHHHHHHcCCceeEEee
Q 018366 328 EFTELAIAAGFKHINFAS 345 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~ 345 (357)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999886644
No 58
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.67 E-value=3.5e-16 Score=135.69 Aligned_cols=148 Identities=19% Similarity=0.174 Sum_probs=107.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----------CCceEEEcCCCC-CCCCC--CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFD-SVPEG--DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~p~~--D~i~ 257 (357)
++..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.+ +++.+ |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 35679999999999999999998 568999998 7777766541 247899999987 55543 9999
Q ss_pred eccccccCChh-HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc--------------CCCc
Q 018366 258 MKWILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD--------------GGGR 322 (357)
Q Consensus 258 ~~~~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 322 (357)
+..++|++++. ....+|++++++|||||++++.+....... . ................ ....
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--K-LYRKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--H-HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--H-HHHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 99999999754 466999999999999999999987653311 0 0000000111110000 0123
Q ss_pred cCCHHHHHHHHHHcCCceeEEee
Q 018366 323 ERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 323 ~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
.++.++|.++|+++||+++++..
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEe
Confidence 57999999999999999998754
No 59
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.67 E-value=4.2e-16 Score=136.06 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=109.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAI 256 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i 256 (357)
.+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4555555 45668999999999999999998743 28899998 7888777653 469999999987 55543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC--CCCCCCch--------hhhhhhh-----hhhhhhhcCCC
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP--EIPEVSSS--------ARETSLL-----DVLLMTRDGGG 321 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~--~~~~~~~~--------~~~~~~~-----~~~~~~~~~~~ 321 (357)
++..++||++ +...+|++++++|||||++++...... ........ ......+ ...+.......
T Consensus 112 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVE--DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccc--hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 9999999995 567999999999999999999774311 00000000 0000000 00000001122
Q ss_pred ccCCHHHHHHHHHHcCCceeEEeec
Q 018366 322 RERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 322 ~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
..+|.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3468999999999999999988654
No 60
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.67 E-value=3.1e-16 Score=140.08 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=112.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC-CEEEe
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG-DAILM 258 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~-D~i~~ 258 (357)
..+++.++ ..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++. +++.+..+|+.+ +.+.. |+|++
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 34556565 55678999999999999999998 6789999998 8888877653 689999999987 55444 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh------hcCCCccCCHHHHHHH
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT------RDGGGRERTKKEFTEL 332 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~t~~e~~~l 332 (357)
..++|+++ +...+|++++++|||||++++........ .............. .......++.+++.++
T Consensus 124 ~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (279)
T 3ccf_A 124 NAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGGKGNI-----KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNI 196 (279)
T ss_dssp ESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECTTTT-----HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHH
T ss_pred cchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCCcch-----HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHH
Confidence 99999995 45689999999999999999976543220 01111111110000 0001245689999999
Q ss_pred HHHcCCceeEEeec
Q 018366 333 AIAAGFKHINFASC 346 (357)
Q Consensus 333 l~~aGf~~~~~~~~ 346 (357)
|+++||+++++...
T Consensus 197 l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 197 LEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHTEEEEEEEEE
T ss_pred HHHcCCEEEEEEEe
Confidence 99999999876543
No 61
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.66 E-value=8.3e-16 Score=136.85 Aligned_cols=161 Identities=11% Similarity=0.086 Sum_probs=112.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hH------HHHhCCCC-------CCceEEEcC-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH------VVQDAPSY-------AGVEHVGGN-M 246 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------~~v~~~~~D-~ 246 (357)
..+++.++ ..+..+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++. ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35666666 6677899999999999999999995 7789999998 43 66665542 479999998 4
Q ss_pred CC---CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh----
Q 018366 247 FD---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR---- 317 (357)
Q Consensus 247 ~~---~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~---- 317 (357)
.. +++.+ |+|++..++||+++.. .+++.++++++|||++++.+...+..................+...
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 43 33433 9999999999997654 5788888888889999999987654321110000000111011000
Q ss_pred -cCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 318 -DGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 318 -~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
......++.+++.++++++||++++....
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00124679999999999999999887655
No 62
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.65 E-value=2e-16 Score=139.54 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=110.8
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCCCCCCC--CEEEe
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDSVPEG--DAILM 258 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~p~~--D~i~~ 258 (357)
..+++.++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+..+.+ |+|++
T Consensus 23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 35666665 55678999999999999999999999899999998 888887765 368999999998722443 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhh--hhhhh----cCCCccCCHHHHHHH
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDV--LLMTR----DGGGRERTKKEFTEL 332 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~t~~e~~~l 332 (357)
..++|+++ +...+|++++++|||||++++.++..... +........... +.... ......++.++|.++
T Consensus 102 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 102 NAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp ESCGGGST--THHHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred eCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 99999994 56799999999999999999987532211 000000000000 00000 013356799999999
Q ss_pred HHHcCCce
Q 018366 333 AIAAGFKH 340 (357)
Q Consensus 333 l~~aGf~~ 340 (357)
|+++||++
T Consensus 177 l~~aGf~v 184 (259)
T 2p35_A 177 LSPKSSRV 184 (259)
T ss_dssp HGGGEEEE
T ss_pred HHhcCCce
Confidence 99999974
No 63
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.65 E-value=4.5e-16 Score=136.89 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=110.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---CCceEEEcCCCC-CCCCC--CEE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFD-SVPEG--DAI 256 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~i 256 (357)
.+.+.++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4555555 446789999999999999999998765 8999998 7788777653 679999999987 66543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC--C--------CCCCc-hhhhhhhhhh-----hhhhhcCC
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE--I--------PEVSS-SARETSLLDV-----LLMTRDGG 320 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~--~--------~~~~~-~~~~~~~~~~-----~~~~~~~~ 320 (357)
++..++|++ ++...+|++++++|||||++++....... . ..... .......++. .+......
T Consensus 113 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhh--hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 999999999 55679999999999999999997542110 0 00000 0000000000 00000001
Q ss_pred CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 321 GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 321 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
...+|.++|.++|+++||+++++...
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 12249999999999999999988754
No 64
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.65 E-value=4.9e-16 Score=139.21 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=111.1
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-C-CCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-S-VPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~p~ 252 (357)
..++..++ . ++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555555 2 3579999999999999999988 568999998 7888877652 578999999987 3 344
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhh-------hcCCCcc
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMT-------RDGGGRE 323 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 323 (357)
+ |+|++..++||+++ ...+|++++++|||||++++.+....... ........+...... .......
T Consensus 135 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCC
Confidence 3 99999999999954 47899999999999999999876432100 000000000000000 0012355
Q ss_pred CCHHHHHHHHHHcCCceeEEeecC
Q 018366 324 RTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 324 ~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
++.+++.++|+++||+++++....
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHHHHHHCCCceeeeeeEE
Confidence 799999999999999999887653
No 65
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.64 E-value=8.3e-16 Score=135.80 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=103.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----CCCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .+++.++.+|+.+ +++.+ |+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 468899998 777776654 2679999999977 55554 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC---CCccCCHHHHHHHHHHcCCc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG---GGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 339 (357)
|+++ +...+|++++++|||||++++. ...++ ..........+..+....... ....++.+++.++|+++||+
T Consensus 115 ~~~~--~~~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVP--DWPKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCT--THHHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcC--CHHHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 9995 4578999999999999999987 21111 011000011111111110000 12346789999999999999
Q ss_pred eeEEe
Q 018366 340 HINFA 344 (357)
Q Consensus 340 ~~~~~ 344 (357)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 77653
No 66
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.64 E-value=1e-15 Score=131.65 Aligned_cols=137 Identities=21% Similarity=0.180 Sum_probs=101.8
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhHH
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDHC 270 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~~ 270 (357)
..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+.+ |+|++.+++|+++ +.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~ 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVD--DP 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS--CH
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhcc--CH
Confidence 679999999999999988765 78887 7888877765 79999999877 55543 9999999999995 45
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 271 LRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 271 ~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
..+|++++++|+|||++++.+..... .......... ...........++.+++.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 78999999999999999998764321 1110000000 0000011345579999999999999999887654
No 67
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.63 E-value=8.7e-16 Score=134.16 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=81.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CEEEecc-cccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DAILMKW-ILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~i~~~~-~lh~ 264 (357)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5679999999999999999988 457999998 7888877653 279999999987 55544 9999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 265 WD-DDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 265 ~~-~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
++ +++..++|++++++|||||++++..
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 84 4678899999999999999999843
No 68
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=141.99 Aligned_cols=145 Identities=15% Similarity=0.251 Sum_probs=104.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------------------------ 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 236 (357)
...+|||||||+|.++..+++.++..+++++|+ +.+++.+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 567999999999999999999999999999999 7777766542
Q ss_pred ----------------------------CCceEEEcCCCCCC------CC-C-CEEEeccccccC----ChhHHHHHHHH
Q 018366 237 ----------------------------AGVEHVGGNMFDSV------PE-G-DAILMKWILHCW----DDDHCLRILKN 276 (357)
Q Consensus 237 ----------------------------~~v~~~~~D~~~~~------p~-~-D~i~~~~~lh~~----~~~~~~~~L~~ 276 (357)
.+|+|+.+|+.... +. . |+|++..+++++ +++...++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998632 33 3 999999999765 67788999999
Q ss_pred HHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH--cCCceeEEeec
Q 018366 277 CYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA--AGFKHINFASC 346 (357)
Q Consensus 277 ~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 346 (357)
++++|||||+|++....+.... ........... .. ......++++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~------~~~~~~~~~~~-~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYG------KRKTLTETIYK-NY-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHH------TTTTSCHHHHH-HH-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhh------hhhcccHHHHh-hh-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999999998543221100 00000000000 01 1122357899999999 99998887654
No 69
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.63 E-value=2.5e-15 Score=126.93 Aligned_cols=142 Identities=11% Similarity=0.136 Sum_probs=110.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCCCC-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-D 254 (357)
.+++.++ ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 4455555 445679999999999999999987 568999998 7788776642 479999999887 44444 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++..++|++++++...+|++++++|||||++++++.........+ ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999888889999999999999999999887654321100 01233468899999998
Q ss_pred HcCCceeEEeec
Q 018366 335 AAGFKHINFASC 346 (357)
Q Consensus 335 ~aGf~~~~~~~~ 346 (357)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 6 998887543
No 70
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.62 E-value=3.5e-16 Score=134.88 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=109.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCC-----CCCC--CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDS-----VPEG--DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-----~p~~--D~ 255 (357)
.++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. .+.. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4555555 345589999999999999999988 568999998 88888888777888988887651 2222 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc-----CCCccCCHHHHH
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD-----GGGRERTKKEFT 330 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~~ 330 (357)
|++..++| . ++...+|++++++|||||++++.+............. .+......... .....+|.++|.
T Consensus 120 v~~~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD---GWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSC---EEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCcccccc---ccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 5 4557999999999999999999887543322110000 00000000000 012346999999
Q ss_pred HHHHHcCCceeEEee
Q 018366 331 ELAIAAGFKHINFAS 345 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~ 345 (357)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999998865
No 71
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=128.96 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=102.4
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEe
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILM 258 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~ 258 (357)
...+++.+....+..+|||||||+|.++..+. .+++++|+.+. ++.++.+|+.+ +++.+ |+|++
T Consensus 55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEE
Confidence 33455555434456799999999999998873 57888887332 57889999987 56544 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
..++|+ ++...+|++++++|+|||++++.+.... ..+.+++.++++++||
T Consensus 122 ~~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf 171 (215)
T 2zfu_A 122 CLSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGF 171 (215)
T ss_dssp ESCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTE
T ss_pred ehhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCC
Confidence 999984 4567999999999999999999874310 1278999999999999
Q ss_pred ceeEEeecCCceeEEEEeC
Q 018366 339 KHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 339 ~~~~~~~~~~~~~vie~~~ 357 (357)
++++.....+...++.++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 172 KIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEEECCSTTCEEEEEEE
T ss_pred EEEEEecCCCeEEEEEEEe
Confidence 9988766666666666654
No 72
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.62 E-value=1.5e-14 Score=121.41 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=107.2
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEEEe
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAILM 258 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i~~ 258 (357)
.++..+. ++..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |+|++
T Consensus 38 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAMA--PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHHS--CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHhc--cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 4555443 46679999999999999999987 568899998 7787777653 579999999988 56543 99999
Q ss_pred c-cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 259 K-WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 259 ~-~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
. .++|++++++...+|+++++.|+|||++++..... ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999988888999999999999999999865321 1257889999999999
Q ss_pred CceeEEeec
Q 018366 338 FKHINFASC 346 (357)
Q Consensus 338 f~~~~~~~~ 346 (357)
|++++....
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999887544
No 73
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.62 E-value=1.6e-15 Score=133.49 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=85.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDH 269 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~ 269 (357)
...+|||||||+|.++..+++.+ .+++++|+ +.|++.+++.++++++.+|+.+ +++++ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH--
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH--
Confidence 45699999999999999999886 46888998 8899999988999999999988 77765 99999999998753
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.+++++++++|||||+|+++....+
T Consensus 115 -~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 -DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4789999999999999999886543
No 74
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=9e-16 Score=134.28 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=106.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---CCCceEEEcCCCC-CCCC-------CCEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---YAGVEHVGGNMFD-SVPE-------GDAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~p~-------~D~i~~~ 259 (357)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 34667999999999999999999987 7888888 788877754 2479999999987 3221 3899999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhh-------hhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARE-------TSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.++|++++++...+|++++++|||||++++++...+... ..... .......+.. ......++.+++.++
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 207 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELY 207 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHH
Confidence 999999988899999999999999999999998643210 00000 0000001110 011223689999999
Q ss_pred HHHcCCceeEEe
Q 018366 333 AIAAGFKHINFA 344 (357)
Q Consensus 333 l~~aGf~~~~~~ 344 (357)
| +||+++...
T Consensus 208 ~--aGf~~~~~~ 217 (245)
T 3ggd_A 208 F--PDFEILSQG 217 (245)
T ss_dssp C--TTEEEEEEE
T ss_pred h--CCCEEEecc
Confidence 9 999998753
No 75
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.61 E-value=5.2e-16 Score=132.30 Aligned_cols=151 Identities=7% Similarity=-0.030 Sum_probs=106.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
..+..+|||+|||+|..+..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 345679999999999985555444 5678999998 7888777642 578999999987 66543 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
||++.++...+|++++++|||||++++.+...++.............+.............++.+++.++|.++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99988889999999999999999999998876542211000000000000000000012457999999999999987765
Q ss_pred E
Q 018366 343 F 343 (357)
Q Consensus 343 ~ 343 (357)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 4
No 76
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.61 E-value=8.6e-15 Score=127.66 Aligned_cols=101 Identities=22% Similarity=0.355 Sum_probs=82.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~ 255 (357)
.+.+.++ +..+|||+|||+|.++..+++. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 26 ~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 99 (243)
T 3d2l_A 26 WVLEQVE---PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDA 99 (243)
T ss_dssp HHHHHSC---TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEE
T ss_pred HHHHHcC---CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCE
Confidence 3444443 4579999999999999999887 68999998 8888877652 579999999887 55544 99
Q ss_pred EEecc-ccccC-ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 256 ILMKW-ILHCW-DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 256 i~~~~-~lh~~-~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
|++.. ++||+ +.++...+|++++++|||||++++.
T Consensus 100 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 100 ITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99986 99998 5567889999999999999999874
No 77
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.60 E-value=3.9e-15 Score=128.50 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=109.2
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC---CCCCC--CEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD---SVPEG--DAI 256 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~p~~--D~i 256 (357)
..+++.++ .+..+|||+|||+|.++..+++. + .+++++|+ +.+++.+++.. .++..+|+.+ +++.+ |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 45666554 45679999999999999999988 4 78999998 77888776532 4788899875 34433 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh-hhhhh-----hhcCCCccCCHHHHH
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL-DVLLM-----TRDGGGRERTKKEFT 330 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~t~~e~~ 330 (357)
++.+++||+++. ..+|+++++.|+|||++++..+..... ....... ..+.. ....+...++.++|.
T Consensus 98 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (230)
T 3cc8_A 98 IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEML 169 (230)
T ss_dssp EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHH
T ss_pred EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCcceEEEecHHHHH
Confidence 999999999654 699999999999999999987543210 0000000 00000 000123557999999
Q ss_pred HHHHHcCCceeEEeecC
Q 018366 331 ELAIAAGFKHINFASCV 347 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~~ 347 (357)
++|+++||+++++....
T Consensus 170 ~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 170 RMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHTTEEEEEEEEEE
T ss_pred HHHHHcCCeEEEEEecc
Confidence 99999999998886643
No 78
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.8e-15 Score=133.13 Aligned_cols=163 Identities=16% Similarity=0.194 Sum_probs=109.9
Q ss_pred HHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC--------CCC
Q 018366 169 TYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--------YAG 238 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~ 238 (357)
.|.+....+.......+..... .+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ .++
T Consensus 13 ~y~~~rp~y~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 90 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDEYHD--GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHHHCC--SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred HHhhcCCCCCHHHHHHHHHHhc--CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence 3444333333333444444333 467899999999999999999987 8889999999 888887754 368
Q ss_pred ceEEEcCCCC-CCCC------C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhh
Q 018366 239 VEHVGGNMFD-SVPE------G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSL 309 (357)
Q Consensus 239 v~~~~~D~~~-~~p~------~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~ 309 (357)
++++.+|+.+ +.+. + |+|++..++||+ +...+|++++++|||||+|++.+...+.....+. ....
T Consensus 91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~~~ 164 (299)
T 3g5t_A 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPE---FDDL 164 (299)
T ss_dssp EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGG---GTTH
T ss_pred eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHH---HHHH
Confidence 9999999987 4444 3 999999999999 4579999999999999999996554321111111 1111
Q ss_pred hhhhhhhh-cCCCc--cCCHHHHHHHHHHcCCc
Q 018366 310 LDVLLMTR-DGGGR--ERTKKEFTELAIAAGFK 339 (357)
Q Consensus 310 ~~~~~~~~-~~~~~--~~t~~e~~~ll~~aGf~ 339 (357)
+.-..... ..+.. .+..+.+.++++++||.
T Consensus 165 ~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 165 MIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp HHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred HHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence 11111000 00111 14567789999999993
No 79
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.58 E-value=2.9e-15 Score=134.66 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=95.3
Q ss_pred CCCceEEEEcCCcchHHH----HHHhhCCCCeE--EEeec-hHHHHhCCCC-------CCceE--EEcCCCC-C------
Q 018366 193 QNVERLVDVGGGFGVTLS----MITSKYPQIKA--VNFDL-PHVVQDAPSY-------AGVEH--VGGNMFD-S------ 249 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~~v~~--~~~D~~~-~------ 249 (357)
.+..+|||||||+|.++. .++..+|+..+ +++|. ++|++.+++. +++.+ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 345799999999997654 45566688754 99998 7888866532 24444 4444432 1
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhc--CCCccCC
Q 018366 250 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRD--GGGRERT 325 (357)
Q Consensus 250 ~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~t 325 (357)
++++ |+|++.++|||++ +..++|++++++|||||++++.+...+. .. ...+........ .....++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVSGSS-----GW---DKLWKKYGSRFPQDDLCQYIT 200 (292)
T ss_dssp TCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEECTTS-----HH---HHHHHHHGGGSCCCTTCCCCC
T ss_pred cCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEecCCc-----cH---HHHHHHHHHhccCCCcccCCC
Confidence 2333 9999999999995 4578999999999999999998653211 11 111111111000 0234578
Q ss_pred HHHHHHHHHHcCCceeEE
Q 018366 326 KKEFTELAIAAGFKHINF 343 (357)
Q Consensus 326 ~~e~~~ll~~aGf~~~~~ 343 (357)
.++|.++|+++||+.+..
T Consensus 201 ~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 999999999999998764
No 80
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.57 E-value=1.1e-14 Score=127.71 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=102.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------------------CCCceEEEcCCCC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMFD 248 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~D~~~ 248 (357)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35679999999999999999987 468999999 788876632 1468999999998
Q ss_pred -CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccC
Q 018366 249 -SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRER 324 (357)
Q Consensus 249 -~~p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (357)
+.+ .. |+|++..+||++++++...++++++++|||||+++++....+.... .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~------------------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH------------------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC------------------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC------------------CCCCCCC
Confidence 443 33 9999999999999888889999999999999999876654332100 0011125
Q ss_pred CHHHHHHHHHHcCCceeEEee
Q 018366 325 TKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 325 t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+.+++.++|.+ +|+++....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 89999999987 599877644
No 81
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.56 E-value=5.6e-14 Score=123.03 Aligned_cols=152 Identities=20% Similarity=0.298 Sum_probs=106.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCc--chHHHHHH-hhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---
Q 018366 183 ERILEHYEGFQNVERLVDVGGGF--GVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS--- 249 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~--G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~--- 249 (357)
...++.+..-.+..+|||||||+ +.++..++ +..|+.+++++|. |.|++.+++. .++.|+.+|+.++
T Consensus 67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~ 146 (277)
T 3giw_A 67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASI 146 (277)
T ss_dssp HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH
T ss_pred HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhh
Confidence 34444444223567999999997 44455554 4679999999999 8999988752 3689999999872
Q ss_pred C--C---CC-C-----EEEeccccccCChhH-HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhh
Q 018366 250 V--P---EG-D-----AILMKWILHCWDDDH-CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTR 317 (357)
Q Consensus 250 ~--p---~~-D-----~i~~~~~lh~~~~~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (357)
+ | .. | .|+++.+|||+++++ ...+|++++++|+|||+|++.+...+..+ .........+...
T Consensus 147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p-----~~~~~~~~~~~~~- 220 (277)
T 3giw_A 147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP-----QEVGRVAREYAAR- 220 (277)
T ss_dssp HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH-----HHHHHHHHHHHHT-
T ss_pred hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH-----HHHHHHHHHHHhc-
Confidence 1 1 11 3 688999999998876 57999999999999999999987654211 1111122222211
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeE
Q 018366 318 DGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 318 ~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
......+|.+|+.++|. ||+.++
T Consensus 221 g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 221 NMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp TCCCCCCCHHHHHHTTT--TSEECT
T ss_pred CCCCccCCHHHHHHHhC--CCcccC
Confidence 11345689999999995 999754
No 82
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.55 E-value=1.2e-15 Score=137.04 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=86.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcCCCC-C--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFD-S-- 249 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~-~-- 249 (357)
.+...++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .++.+..+|+.+ +
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 124 (293)
T 3thr_A 48 WLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD 124 (293)
T ss_dssp HHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred HHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence 3444444 3456799999999999999999984 48899998 7888877531 468889999877 4
Q ss_pred -CCCC--CEEEec-cccccCCh-----hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 250 -VPEG--DAILMK-WILHCWDD-----DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 -~p~~--D~i~~~-~~lh~~~~-----~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
++.+ |+|++. +++||+++ ++...+|++++++|||||++++..+
T Consensus 125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4543 999998 89999987 6788999999999999999998765
No 83
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.55 E-value=1.6e-13 Score=113.19 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=96.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCC--CEEEeccccccCChh--
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEG--DAILMKWILHCWDDD-- 268 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~--D~i~~~~~lh~~~~~-- 268 (357)
+..+|||+|||+|.++..+++.. +++++|+ +.+++. .++++++.+|+.++.+.+ |+|+++..+|+.++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 45699999999999999999987 8899998 778877 467999999998866543 999999888865443
Q ss_pred -----HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 269 -----HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 269 -----~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
+...+++++.+.+ |||++++++... .+.+++.++++++||+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEE
Confidence 4567899999999 999999977421 14678889999999999887
Q ss_pred eecC
Q 018366 344 ASCV 347 (357)
Q Consensus 344 ~~~~ 347 (357)
....
T Consensus 147 ~~~~ 150 (170)
T 3q87_B 147 KVRK 150 (170)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 6654
No 84
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.54 E-value=7.5e-15 Score=138.64 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=107.4
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC------CCCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD------SVPE-G 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~------~~p~-~ 253 (357)
...+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++......+.. +++. .
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 456667666 566789999999999999999987 458999998 7888888764 33333322211 1222 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++.+++||++ +...+|++++++|||||++++..+.... ......+.... ..+...++.+++.++
T Consensus 172 fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~~~~~~~~~-~~~~~~~s~~~l~~l 239 (416)
T 4e2x_A 172 ANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGD---------IVAKTSFDQIF-DEHFFLFSATSVQGM 239 (416)
T ss_dssp EEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHH---------HHHHTCGGGCS-TTCCEECCHHHHHHH
T ss_pred EEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHH---------hhhhcchhhhh-hhhhhcCCHHHHHHH
Confidence 9999999999995 5689999999999999999997653211 00000010000 124556899999999
Q ss_pred HHHcCCceeEEeecC
Q 018366 333 AIAAGFKHINFASCV 347 (357)
Q Consensus 333 l~~aGf~~~~~~~~~ 347 (357)
++++||+++++...+
T Consensus 240 l~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 240 AQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHTTEEEEEEEEEC
T ss_pred HHHcCCEEEEEEEcc
Confidence 999999999887754
No 85
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.53 E-value=4.2e-15 Score=131.60 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=98.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------------------------------
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------------------- 236 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------------------- 236 (357)
..+..+|||||||+|.++..++.... .+++++|+ +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 34567999999999988766555432 26899998 7788765431
Q ss_pred -CCce-EEEcCCCCC--CC---C-C-CEEEeccccccCC--hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhh
Q 018366 237 -AGVE-HVGGNMFDS--VP---E-G-DAILMKWILHCWD--DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSAR 305 (357)
Q Consensus 237 -~~v~-~~~~D~~~~--~p---~-~-D~i~~~~~lh~~~--~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~ 305 (357)
.++. ++.+|+.+. ++ . . |+|+++.+||+.. .++...+|++++++|||||+|++.+......
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-------- 203 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------- 203 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------
Confidence 0133 889999873 22 2 2 9999999999852 3567899999999999999999987543210
Q ss_pred hhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 306 ETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
+ ... .... ....++.+++.++|+++||+++++...
T Consensus 204 ~--~~g---~~~~-~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 Y--MVG---KREF-SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp E--EET---TEEE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred c--eeC---CeEe-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0 000 0000 122458999999999999999887653
No 86
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.52 E-value=3.9e-13 Score=117.85 Aligned_cols=105 Identities=18% Similarity=0.333 Sum_probs=83.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~ 255 (357)
.++..+. ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 4444443 345679999999999999999987 568999998 7888877642 368999999987 55544 99
Q ss_pred EEec-cccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 256 ILMK-WILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 256 i~~~-~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|++. ..+++++.++..++|++++++|||||++++..
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 9986 56777777888999999999999999998743
No 87
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.52 E-value=6e-15 Score=132.67 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=107.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CC-CCC--CEEEecc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SV-PEG--DAILMKW 260 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~-p~~--D~i~~~~ 260 (357)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ ++ +.+ |+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 45679999999999999998876 4558999998 7788776642 358999999988 55 333 9999999
Q ss_pred cccc--CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC---------CCCC---------chhh-hhhhhhhhhhhh--
Q 018366 261 ILHC--WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI---------PEVS---------SSAR-ETSLLDVLLMTR-- 317 (357)
Q Consensus 261 ~lh~--~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~---------~~~~---------~~~~-~~~~~~~~~~~~-- 317 (357)
++|+ .+.++...+|++++++|||||++++..+..... .... .... ....+.+.....
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9998 566788899999999999999999987542110 0000 0000 000000000000
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 318 DGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 318 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
......++.+++.++|+++||++++....
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00124568999999999999999988654
No 88
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.52 E-value=5e-14 Score=126.10 Aligned_cols=140 Identities=10% Similarity=0.135 Sum_probs=107.0
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DA 255 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~ 255 (357)
.+++.++ ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 4445454 335689999999999999999988 458999998 7788776642 279999999988 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIA 335 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 335 (357)
|++..++||+++++...+|+++++.|||||+++++.....++...+ ......++.+++.++++.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence 9999999999999899999999999999999888776554321110 012334578889998864
Q ss_pred cCCceeEEe
Q 018366 336 AGFKHINFA 344 (357)
Q Consensus 336 aGf~~~~~~ 344 (357)
|+++...
T Consensus 252 --~~~~~~~ 258 (286)
T 3m70_A 252 --WEFLEYN 258 (286)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEE
Confidence 8887764
No 89
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.52 E-value=2.3e-14 Score=126.60 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=103.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C------------------------------
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------------------ 237 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------ 237 (357)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4567999999999999999888765 57899998 7777776431 1
Q ss_pred -Cc-eEEEcCCCC--CCCC---C--CEEEeccccccCCh--hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhh
Q 018366 238 -GV-EHVGGNMFD--SVPE---G--DAILMKWILHCWDD--DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARE 306 (357)
Q Consensus 238 -~v-~~~~~D~~~--~~p~---~--D~i~~~~~lh~~~~--~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~ 306 (357)
++ .++.+|+.+ +.+. + |+|++..++|++++ ++...+|++++++|||||++++.+..... ..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~~--- 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-----YY--- 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-----EE---
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-----eE---
Confidence 17 899999987 2233 3 99999999994432 47789999999999999999998853321 00
Q ss_pred hhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 307 TSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
..-+ ... .....+.+++.++|+++||+++++....
T Consensus 206 -~~~~----~~~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -MIGE----QKF-SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EETT----EEE-ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EcCC----ccc-cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0000 000 1234689999999999999999886543
No 90
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.52 E-value=4.8e-14 Score=119.46 Aligned_cols=140 Identities=9% Similarity=0.068 Sum_probs=103.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG--D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~--D 254 (357)
.++..++ +. +|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.++.+|+.+ +++.+ |
T Consensus 23 ~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 96 (202)
T 2kw5_A 23 SVANQIP---QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWE 96 (202)
T ss_dssp HHHHHSC---SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCS
T ss_pred HHHHhCC---CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCcc
Confidence 4444443 44 9999999999999999987 468999998 7788777653 378999999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++. +++++.++...+|++++++|||||++++.+....... + ... .. ......++.+++.++|+
T Consensus 97 ~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~--~~~--~~--~~~~~~~~~~~l~~~l~ 161 (202)
T 2kw5_A 97 GIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------Y--NTG--GP--KDLDLLPKLETLQSELP 161 (202)
T ss_dssp EEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------G--TSC--CS--SSGGGCCCHHHHHHHCS
T ss_pred EEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc-------C--CCC--CC--CcceeecCHHHHHHHhc
Confidence 99984 3456767889999999999999999999887543210 0 000 00 00134579999999999
Q ss_pred HcCCceeEEeec
Q 018366 335 AAGFKHINFASC 346 (357)
Q Consensus 335 ~aGf~~~~~~~~ 346 (357)
||+++++...
T Consensus 162 --Gf~v~~~~~~ 171 (202)
T 2kw5_A 162 --SLNWLIANNL 171 (202)
T ss_dssp --SSCEEEEEEE
T ss_pred --CceEEEEEEE
Confidence 9999887543
No 91
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.51 E-value=2.7e-13 Score=115.09 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=97.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC--C-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP--E-G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p--~-~ 253 (357)
.++..++ ..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++. ++++++.+|+.+..+ . .
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 4556565 66778999999999999999999999999999999 8888877652 579999999977433 2 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
|+|++...++ +...+++++.+.|||||++++..... .+.+++.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~l 155 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLTKAVEFL 155 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHHHHHHHH
Confidence 9999988776 44689999999999999999965421 0356778899
Q ss_pred HHcCC
Q 018366 334 IAAGF 338 (357)
Q Consensus 334 ~~aGf 338 (357)
+++||
T Consensus 156 ~~~g~ 160 (204)
T 3e05_A 156 EDHGY 160 (204)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 99998
No 92
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.51 E-value=6.8e-15 Score=126.11 Aligned_cols=99 Identities=13% Similarity=0.227 Sum_probs=83.0
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCCCCCC-C-CEEEecccccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFDSVPE-G-DAILMKWILHC 264 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~p~-~-D~i~~~~~lh~ 264 (357)
..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+..+. . |+|++..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4566899999999999999999885 47888998 777776654 35799999999883344 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 WDD-DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ~~~-~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+++ +...++|++++++|||||++++..+
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 986 4566899999999999999999775
No 93
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.51 E-value=5.9e-14 Score=119.74 Aligned_cols=138 Identities=17% Similarity=0.105 Sum_probs=98.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEEE
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAIL 257 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i~ 257 (357)
.++..+. .+..+|||||||+|.++..+ +. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3444443 25679999999999999887 44 8899998 7888877654 679999999987 66554 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAG 337 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 337 (357)
+.+++||++ +..++|++++++|||||++++.++.... ..................+...+|.++++++|+ |
T Consensus 101 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 101 LFTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEALS-----PWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECTTS-----HHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred EcChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCCcC-----cHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 999999995 4579999999999999999998864322 111000000000000001345679999999999 7
No 94
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.50 E-value=4.1e-13 Score=116.29 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=101.1
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhC----CCCCCceEEEcCCCC-----CCCCC-C
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFD-----SVPEG-D 254 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~-----~~p~~-D 254 (357)
++.++ +.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+ +..+++.++.+|+.+ +.+.. |
T Consensus 67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEE
T ss_pred ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEE
Confidence 33344 55678999999999999999999988778999998 7666543 334789999999876 22233 9
Q ss_pred EEEeccccccCChh-HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018366 255 AILMKWILHCWDDD-HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELA 333 (357)
Q Consensus 255 ~i~~~~~lh~~~~~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 333 (357)
+|+ |++++. ....+|+++.+.|||||++++. ......+..... .....+++. +|
T Consensus 146 ~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~------------------~~~~~~~l~-~l 200 (230)
T 1fbn_A 146 VIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDP------------------KEIFKEQKE-IL 200 (230)
T ss_dssp EEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCH------------------HHHHHHHHH-HH
T ss_pred EEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCH------------------HHhhHHHHH-HH
Confidence 988 454433 3467799999999999999997 221111111000 001246777 89
Q ss_pred HHcCCceeEEeecCCc---eeEEEEe
Q 018366 334 IAAGFKHINFASCVCN---LYIMEFF 356 (357)
Q Consensus 334 ~~aGf~~~~~~~~~~~---~~vie~~ 356 (357)
+++||+.++......+ ..++.++
T Consensus 201 ~~~Gf~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 201 EAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp HHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred HHCCCEEEEEEccCCCccceEEEEEE
Confidence 9999999988876543 5666554
No 95
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.50 E-value=1.1e-14 Score=130.74 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=96.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C-------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A------------------------------- 237 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------- 237 (357)
+..+|||||||+|.+. .++...+..+++++|+ +.+++.+++. +
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4579999999999944 3444444568999999 7788765431 0
Q ss_pred -CceEEEcCCCC--C-----CCCC--CEEEeccccccCCh--hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhh
Q 018366 238 -GVEHVGGNMFD--S-----VPEG--DAILMKWILHCWDD--DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSAR 305 (357)
Q Consensus 238 -~v~~~~~D~~~--~-----~p~~--D~i~~~~~lh~~~~--~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~ 305 (357)
.++++.+|+.+ + ++.+ |+|++..+||++++ ++...+|++++++|||||+|++.+..... .
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-----~--- 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-----W--- 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-----E---
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-----e---
Confidence 03466678876 2 2232 99999999999543 47889999999999999999998643211 0
Q ss_pred hhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeec
Q 018366 306 ETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
+. .-+ ... ....++.++|.++|+++||+++++...
T Consensus 222 ~~-~~~----~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 222 YL-AGE----ARL-TVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp EE-ETT----EEE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EE-cCC----eee-eeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00 000 000 123468999999999999999877543
No 96
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.49 E-value=6.1e-14 Score=120.36 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=96.8
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHh----CCC------CCCceEEEcCCCC-CCCCC
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD----APS------YAGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~v~~~~~D~~~-~~p~~ 253 (357)
+..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +.+.+
T Consensus 20 ~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 98 (218)
T 3mq2_A 20 FEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSG 98 (218)
T ss_dssp HHHHH-TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCC
T ss_pred HHHhh-ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCC
Confidence 33344 45678999999999999999999999999999999 775553 222 2479999999988 55543
Q ss_pred -CEEEecc---cc--ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHH
Q 018366 254 -DAILMKW---IL--HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKK 327 (357)
Q Consensus 254 -D~i~~~~---~l--h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 327 (357)
|.|++.. .+ ||.++ ...+|++++++|||||++++......-.+.. ..... ..........+
T Consensus 99 ~d~v~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~ 165 (218)
T 3mq2_A 99 VGELHVLMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGE-----HPEPTPDSADE 165 (218)
T ss_dssp EEEEEEESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTT-----CCCCCHHHHHH
T ss_pred CCEEEEEccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEeccccccccc------ccccc-----CCccchHHHHH
Confidence 6655222 22 13422 2689999999999999999944322110000 00000 00011112345
Q ss_pred HHHHHHHHcCCceeEEeec
Q 018366 328 EFTELAIAAGFKHINFASC 346 (357)
Q Consensus 328 e~~~ll~~aGf~~~~~~~~ 346 (357)
++.++++++||++.++...
T Consensus 166 ~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 166 WLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHcCCCceeeecc
Confidence 6888999999999887654
No 97
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.49 E-value=6e-14 Score=119.24 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=103.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~~~~~lh~ 264 (357)
.+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++. .++++..+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 3567999999999999999876 46678999998 7888777652 24999999998755544 99999887765
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
...+++++++.|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 46889999999999999999654321 36678899999999999988
Q ss_pred ecCCceeEEEEeC
Q 018366 345 SCVCNLYIMEFFK 357 (357)
Q Consensus 345 ~~~~~~~vie~~~ 357 (357)
...+...++.-+|
T Consensus 184 ~~~~w~~~~~~~~ 196 (205)
T 3grz_A 184 RAGRWIGLAISRK 196 (205)
T ss_dssp EETTEEEEEEEEC
T ss_pred ccCCEEEEEEecc
Confidence 8777777766543
No 98
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.49 E-value=2.2e-13 Score=121.29 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=108.3
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G- 253 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~- 253 (357)
..+++.++ .+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.++.+. .
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f 177 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF 177 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence 34555443 3457999999999999999999999999999999 7788777642 4799999999885543 3
Q ss_pred CEEEecc-------------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh
Q 018366 254 DAILMKW-------------ILHCWDD----------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL 310 (357)
Q Consensus 254 D~i~~~~-------------~lh~~~~----------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 310 (357)
|+|+++. ++++.|. +....+++++.+.|+|||++++...
T Consensus 178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 239 (276)
T 2b3t_A 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------------ 239 (276)
T ss_dssp EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------------------
T ss_pred cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------
Confidence 9999973 4444331 3557899999999999999998421
Q ss_pred hhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC-CceeEEEEeC
Q 018366 311 DVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV-CNLYIMEFFK 357 (357)
Q Consensus 311 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vie~~~ 357 (357)
..+.+++.++++++||+.+++.... +...++.+++
T Consensus 240 ------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0246788999999999988876654 5555666653
No 99
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.48 E-value=1.2e-13 Score=126.79 Aligned_cols=112 Identities=12% Similarity=0.189 Sum_probs=90.8
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---------------CCCceEEEcCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 246 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D~ 246 (357)
..+++.+. +.+..+|||||||+|..+..++...+..+++++|+ +.+++.|++ ..+|+|+.+|+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 45677666 67788999999999999999998887667999999 666655542 25799999999
Q ss_pred CC-CCC----CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCC
Q 018366 247 FD-SVP----EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIP 298 (357)
Q Consensus 247 ~~-~~p----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~ 298 (357)
++ +++ ..|+|+++++++ + ++....|+++++.|||||+|++.|.+.+.+.
T Consensus 242 ~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred cCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 98 543 349999987764 3 6677889999999999999999999887653
No 100
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.47 E-value=1.4e-14 Score=125.97 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=92.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC---CCCCC--CEEE----
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD---SVPEG--DAIL---- 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~p~~--D~i~---- 257 (357)
.+..+|||||||+|..+..+++..|. +++++|+ |.+++.+++. .++.++.+|..+ +++++ |.|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 35679999999999999999988775 7888998 8898888652 457888888654 34543 7765
Q ss_pred -eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 258 -MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 258 -~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
....++|+ .+...++++++++|||||+|++++...... .....++ .......+.+...|.++
T Consensus 138 ~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 35566666 667899999999999999999865432110 0000000 00111245667788899
Q ss_pred CCceeEE
Q 018366 337 GFKHINF 343 (357)
Q Consensus 337 Gf~~~~~ 343 (357)
||+++.+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9987654
No 101
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.47 E-value=2.5e-13 Score=113.84 Aligned_cols=141 Identities=14% Similarity=0.257 Sum_probs=108.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C--CceEEEcCCCCCCCC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFDSVPE- 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~p~- 252 (357)
+.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. . +++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34566665 556789999999999999999988 678999998 7777776542 3 499999999885554
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
. |+|++...+|+ ..+....+++++++.|+|||++++...... ...++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHHH
Confidence 3 99999888875 346778999999999999999999775321 1235667
Q ss_pred HHHHcCCceeEEeecCCceeEEEEeC
Q 018366 332 LAIAAGFKHINFASCVCNLYIMEFFK 357 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~~~~~vie~~~ 357 (357)
.+++. |..+++.....+.+++.++|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77777 77777777777777777765
No 102
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.47 E-value=2.3e-13 Score=117.38 Aligned_cols=152 Identities=13% Similarity=0.034 Sum_probs=95.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec--hHHHHhC---CCC------CCceEEEcCCCCCCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDA---PSY------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~~------~~v~~~~~D~~~~~p~ 252 (357)
.+.+.+. .+..+|||||||+|.++..+++..|+.+++++|+ +.+++.| ++. +++.++.+|+.+. |.
T Consensus 16 ~~~~~~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~ 92 (225)
T 3p2e_A 16 ELTEIIG--QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PF 92 (225)
T ss_dssp HHHHHHT--TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CG
T ss_pred HHHHHhC--CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hh
Confidence 4444443 3567999999999999999999899999999998 3454444 442 5689999998763 33
Q ss_pred --CCEEEeccccccCChh------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccC
Q 018366 253 --GDAILMKWILHCWDDD------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRER 324 (357)
Q Consensus 253 --~D~i~~~~~lh~~~~~------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (357)
.|.|.+..+.+.|+.. +...+|++++++|||||+++++........ . .. + ....... . .....
T Consensus 93 ~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~--~~-~-~~~~~~~---~-~~~~~ 163 (225)
T 3p2e_A 93 ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYE-E--AE-I-KKRGLPL---L-SKAYF 163 (225)
T ss_dssp GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHH
T ss_pred hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccch-h--ch-h-hhcCCCC---C-Chhhc
Confidence 2555554444444321 124689999999999999999554332210 0 00 0 0000000 0 00111
Q ss_pred CHHHHHHHHHHcCCceeEEeecC
Q 018366 325 TKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 325 t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
..+++.++++++||++.+....+
T Consensus 164 ~~~el~~~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 164 LSEQYKAELSNSGFRIDDVKELD 186 (225)
T ss_dssp HSHHHHHHHHHHTCEEEEEEEEC
T ss_pred chHHHHHHHHHcCCCeeeeeecC
Confidence 22359999999999988876554
No 103
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.45 E-value=2e-13 Score=120.81 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=79.9
Q ss_pred CCceEEEEcCCcch----HHHHHHhhCC----CCeEEEeec-hHHHHhCCCC----------------------------
Q 018366 194 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 236 (357)
+..+|+|+|||||. ++..+++..| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666666645 468999999 8888876531
Q ss_pred ---------CCceEEEcCCCC-CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 237 ---------AGVEHVGGNMFD-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 237 ---------~~v~~~~~D~~~-~~p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
.+|.|..+|+.+ +++ .. |+|+|.++|++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 258899999998 465 33 999999999999988889999999999999999988
No 104
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.44 E-value=3.6e-13 Score=111.45 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=81.7
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcCCCCCCCC---
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFDSVPE--- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~p~--- 252 (357)
.+++.+. ..+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++. + ++ ++.+|..+.++.
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 4555555 56678999999999999999999999999999999 7788777641 2 67 888888764432
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. |+|++..++|+ ..+++++.+.|||||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 3 99999999987 4789999999999999998664
No 105
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.44 E-value=5.1e-14 Score=120.17 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=92.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCC-----CceEEEcCCCCCCC-----
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-----GVEHVGGNMFDSVP----- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-----~v~~~~~D~~~~~p----- 251 (357)
..+++.++...+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++.- +++++.+|+.++++
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34555554225678999999999999999999999999999999 88888887641 57888888877443
Q ss_pred -CC-CEEEecccccc------CChhHH------------------HHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhh
Q 018366 252 -EG-DAILMKWILHC------WDDDHC------------------LRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSAR 305 (357)
Q Consensus 252 -~~-D~i~~~~~lh~------~~~~~~------------------~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~ 305 (357)
.. |+|++...++. ++++.. ..++++++++|||||++++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence 23 99999654433 222211 688999999999999966654321
Q ss_pred hhhhhhhhhhhhcCCCccCCHHHHHHHHH--HcCCceeEEeecCCc-eeEEEE
Q 018366 306 ETSLLDVLLMTRDGGGRERTKKEFTELAI--AAGFKHINFASCVCN-LYIMEF 355 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~~~-~~vie~ 355 (357)
...+++.++++ ++||..+++.....+ ..++.+
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~ 202 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAV 202 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEE
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEE
Confidence 13566778888 899998888776543 344443
No 106
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.43 E-value=7.8e-13 Score=130.26 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=88.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC------------CCCceEEEcCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFD- 248 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~- 248 (357)
.+++.+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ .++++++.+|+.+
T Consensus 712 ~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL 790 (950)
T 3htx_A 712 YALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF 790 (950)
T ss_dssp HHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC
T ss_pred HHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC
Confidence 3444444 3456899999999999999999998 5578999999 888887754 2469999999988
Q ss_pred CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 249 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 249 ~~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+.+.+ |+|++..++||++++....+++++++.|||| .+++..+.
T Consensus 791 p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 791 DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 55433 9999999999999888889999999999998 77776643
No 107
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.41 E-value=3.1e-13 Score=122.58 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=81.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------------CCceEEEcCCCC-C----CC--C
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFD-S----VP--E 252 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~-~----~p--~ 252 (357)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ + ++ .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 5679999999999999999884 5678999998 7788776542 268999999987 3 42 2
Q ss_pred -C-CEEEeccccccC--ChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 253 -G-DAILMKWILHCW--DDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 253 -~-D~i~~~~~lh~~--~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
. |+|++..++|+. +.++...+|++++++|||||++++..+.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3 999999999987 4466789999999999999999998763
No 108
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.41 E-value=3.7e-13 Score=121.23 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=99.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C--------CceEEEcCCCC---------CCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--------GVEHVGGNMFD---------SVP 251 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--------~v~~~~~D~~~---------~~p 251 (357)
+..+|||||||+|..+..++... ..+++++|+ +.+++.|+++ . +++|...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 35799999999998777666543 458999999 8899888753 1 15677888722 234
Q ss_pred CC--CEEEecccccc-CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCC------------CCCchhhhhhhh----hh
Q 018366 252 EG--DAILMKWILHC-WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIP------------EVSSSARETSLL----DV 312 (357)
Q Consensus 252 ~~--D~i~~~~~lh~-~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~------------~~~~~~~~~~~~----~~ 312 (357)
.+ |+|+|..++|+ +..++...+|++++++|||||++++..+....-. .......+.... +.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 33 99999999997 4545678999999999999999998776321100 000000000000 00
Q ss_pred --hhhhh--cCC--CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 313 --LLMTR--DGG--GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 313 --~~~~~--~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
.+... ... -...+.+++.++++++||+++.....
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000 000 12457899999999999999887654
No 109
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.40 E-value=4.4e-13 Score=117.55 Aligned_cols=107 Identities=11% Similarity=0.123 Sum_probs=81.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CC------CCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SV------PEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~------p~~ 253 (357)
...+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.|++.++++..-.++..|+.+ +. +..
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 345666666 667789999999999999999987 458899998 8888887653111122233322 11 223
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++..++||++.++...+++++.++| |||++++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999999999889999999999999 9999998654
No 110
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.40 E-value=1.5e-13 Score=119.41 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=77.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC---CCCCC--CEEEe-cc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD---SVPEG--DAILM-KW 260 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~p~~--D~i~~-~~ 260 (357)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .+++++.+|+.+ +++++ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 3567999999999999999976544 37899998 8888777642 468999999865 35543 99998 55
Q ss_pred c--cccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 261 I--LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 261 ~--lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
. .+++..+....++++++++|||||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 5 33443455668899999999999999997754
No 111
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.39 E-value=1.2e-12 Score=112.53 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=94.3
Q ss_pred CCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhC----CCCCCceEEEcCCCCC--CC--C-C-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFDS--VP--E-G-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~~--~p--~-~-D~i~~~ 259 (357)
+++..+|||+|||+|.++..+++. .|+-+++++|+ +.+++.+ ++.+++..+.+|..++ .+ . . |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999987 48889999998 7777654 3457899999988762 22 2 2 888763
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
+++. ++...+++++++.|||||+++|.......+.. .......++..+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~--------------------~p~~~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVT--------------------TEPSEVYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHH--------------------TCCCHHHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCC--------------------CChHHHHHHHHHHHHHCCCE
Confidence 3332 45678999999999999999986532211100 00000123345678899999
Q ss_pred eeEEeecCC
Q 018366 340 HINFASCVC 348 (357)
Q Consensus 340 ~~~~~~~~~ 348 (357)
.++......
T Consensus 211 l~e~i~L~p 219 (233)
T 4df3_A 211 IKDVVHLDP 219 (233)
T ss_dssp EEEEEECTT
T ss_pred EEEEEccCC
Confidence 998877653
No 112
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.37 E-value=2.9e-12 Score=109.59 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=78.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C--CCCC--CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S--VPEG--DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~p~~--D~i~~~~~ 261 (357)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 456899999999999999999999999999998 7888777542 579999999987 3 4443 99998765
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 262 LHCWDDD------HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 262 lh~~~~~------~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.++.... ....+++++.++|+|||++++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4332111 12579999999999999998854
No 113
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.37 E-value=2.6e-12 Score=111.02 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=97.8
Q ss_pred CCCceEEEEcCC-cchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC--CCCCC--CEEEeccc
Q 018366 193 QNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD--SVPEG--DAILMKWI 261 (357)
Q Consensus 193 ~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~--~~p~~--D~i~~~~~ 261 (357)
++..+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.. +++.. |+|++.-.
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 467899999999 999999999986 678999998 8888877642 269999999643 45533 99999877
Q ss_pred cccCChh-----------------HHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccC
Q 018366 262 LHCWDDD-----------------HCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRER 324 (357)
Q Consensus 262 lh~~~~~-----------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (357)
+++.++. ....+++++.+.|||||+++++..... .
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------------~ 184 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE----------------------------K 184 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------H
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------h
Confidence 7654332 237899999999999999999643110 1
Q ss_pred CHHHHHHHHHHcCCceeEEeecCCc--eeEEEEe
Q 018366 325 TKKEFTELAIAAGFKHINFASCVCN--LYIMEFF 356 (357)
Q Consensus 325 t~~e~~~ll~~aGf~~~~~~~~~~~--~~vie~~ 356 (357)
+.+++.++++++||.+..+....+. ..++.+.
T Consensus 185 ~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~ 218 (230)
T 3evz_A 185 LLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFF 218 (230)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEE
T ss_pred HHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEe
Confidence 2567889999999987666544433 3355554
No 114
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.36 E-value=5.2e-12 Score=107.67 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=93.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHH----HHhCCCCCCceEEEcCCCCC-----CCCC-CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFDS-----VPEG-DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~-----~p~~-D~i~~~~ 260 (357)
..+..+|||+|||+|.++..+++..++.+++++|+ +.+ .+.++...++.++.+|+.++ .+.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45677999999999999999999988778999998 543 44454456788888988762 2333 999986
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH----HHHHHc
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT----ELAIAA 336 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~ll~~a 336 (357)
+.++ ++...++++++++|||||++++.-...+ . .. ..+.+++. +.++++
T Consensus 134 ~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~---------~~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQK---NQIEILKANAEFFLKEKGEVVIMVKARS--------------I---------DS-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCST---THHHHHHHHHHHHEEEEEEEEEEEEHHH--------------H---------CT-TSCHHHHHHHHHHHHHTT
T ss_pred ccCh---hHHHHHHHHHHHHhCCCCEEEEEEecCC--------------c---------cc-cCCHHHHHHHHHHHHHhh
Confidence 3222 3445679999999999999999732210 0 00 01223321 237888
Q ss_pred CCceeEEeecC---CceeEEEEe
Q 018366 337 GFKHINFASCV---CNLYIMEFF 356 (357)
Q Consensus 337 Gf~~~~~~~~~---~~~~vie~~ 356 (357)
|++++..... ..++++.++
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEE
Confidence 9999987763 345666554
No 115
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.35 E-value=7.2e-13 Score=113.01 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=83.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC--CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG--DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~ 264 (357)
.+..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ +++.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45679999999999999999998765 7888998 777776654 2579999999988 66543 99999999877
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 265 WD-------------DDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 265 ~~-------------~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+. .++...+|+++.++|||||++++.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 64 356789999999999999999998864
No 116
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.35 E-value=3.2e-13 Score=120.19 Aligned_cols=125 Identities=12% Similarity=0.092 Sum_probs=93.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~- 253 (357)
.++..++ +.+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.++++..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4555555 667789999999999999999998 78889999998 777776543 147999999998866653
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++ +.+ +...+|+++.++|||||++++...... ..+++.+.
T Consensus 180 fD~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99998 343 335889999999999999999764210 13456677
Q ss_pred HHHcCCceeEEee
Q 018366 333 AIAAGFKHINFAS 345 (357)
Q Consensus 333 l~~aGf~~~~~~~ 345 (357)
++++||+.++...
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7788998877655
No 117
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.35 E-value=7.2e-12 Score=106.33 Aligned_cols=122 Identities=12% Similarity=0.141 Sum_probs=93.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcCCCCCCC---C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFDSVP---E 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~p---~ 252 (357)
.++..+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. + +++++.+|+.+..+ .
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 3455555 566789999999999999999988 678999998 8888877642 3 79999999987322 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.|+|++...+ +.. +++++.+.|||||++++..... -+..++.++
T Consensus 123 ~D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~ 166 (204)
T 3njr_A 123 PEAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQL 166 (204)
T ss_dssp CSEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHH
Confidence 3999987744 233 8999999999999999855321 024567788
Q ss_pred HHHcCCceeEEe
Q 018366 333 AIAAGFKHINFA 344 (357)
Q Consensus 333 l~~aGf~~~~~~ 344 (357)
+++.||++.++.
T Consensus 167 l~~~g~~i~~i~ 178 (204)
T 3njr_A 167 HARHGGQLLRID 178 (204)
T ss_dssp HHHHCSEEEEEE
T ss_pred HHhCCCcEEEEE
Confidence 899998877753
No 118
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.35 E-value=7.9e-13 Score=116.22 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=96.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---C--CceEEEcCCCCCCCC-C-CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--GVEHVGGNMFDSVPE-G-DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~D~~~~~p~-~-D~i~~~~~lh~ 264 (357)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. . .+++..+|+.+.++. . |+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4567999999999999999988765 8889998 7777776642 1 288999998764443 3 9999865443
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
....+++++.+.|||||++++.+... .+.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILK-----------------------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeecc-----------------------------CCHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999999999965432 136788899999999999987
Q ss_pred ecCCceeE
Q 018366 345 SCVCNLYI 352 (357)
Q Consensus 345 ~~~~~~~v 352 (357)
...+...+
T Consensus 243 ~~~~W~~l 250 (254)
T 2nxc_A 243 AEGEWVLL 250 (254)
T ss_dssp EETTEEEE
T ss_pred ccCCeEEE
Confidence 76655443
No 119
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.34 E-value=2.3e-12 Score=113.25 Aligned_cols=128 Identities=13% Similarity=0.158 Sum_probs=99.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~ 252 (357)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+.++.
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 345566555 667789999999999999999999 78999999999 7888877652 4599999999887665
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT 330 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 330 (357)
. |+|++ +.+ +...+++++.++|+|||++++..+..+ ...++.
T Consensus 161 ~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 204 (255)
T 3mb5_A 161 ENVDHVIL-----DLP--QPERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLH 204 (255)
T ss_dssp CSEEEEEE-----CSS--CGGGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCC--CHHHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHH
Confidence 4 99987 233 335789999999999999999764211 134567
Q ss_pred HHHHHcC--CceeEEeec
Q 018366 331 ELAIAAG--FKHINFASC 346 (357)
Q Consensus 331 ~ll~~aG--f~~~~~~~~ 346 (357)
++++++| |..+++...
T Consensus 205 ~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHTGGGBSCCEEECC
T ss_pred HHHHHcCCCccccEEEEE
Confidence 7888899 988877654
No 120
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.34 E-value=1.5e-11 Score=106.03 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=96.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHH----hCCCCCCceEEEcCCCCC-----CCCC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFDS-----VPEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~p~~-D~i~~~ 259 (357)
+.+..+|||+|||+|.++..+++.. |+.+++++|. +.+++ .++..++++++.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567799999999999999999885 6678999998 64444 344447899999999872 2334 999975
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
.. .......+++++++.|||||++++. ........... ....+.+++.++ .++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~------------------~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTKE------------------PEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTSC------------------HHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCCC------------------hhhhhHHHHHHH-Hhh-ce
Confidence 44 1233445699999999999999997 22111100000 001235677777 777 99
Q ss_pred eeEEeecCCc---eeEEEEeC
Q 018366 340 HINFASCVCN---LYIMEFFK 357 (357)
Q Consensus 340 ~~~~~~~~~~---~~vie~~~ 357 (357)
.++....... ..++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9988776543 55665543
No 121
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.34 E-value=3e-12 Score=109.43 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=76.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-C--CCCC--CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-S--VPEG--DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~p~~--D~i~~~~~ 261 (357)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 356899999999999999999999999999999 778877654 2579999999876 2 5543 98877544
Q ss_pred cccCChhH------HHHHHHHHHHhCCCCCEEEEEe
Q 018366 262 LHCWDDDH------CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 262 lh~~~~~~------~~~~L~~~~~~LkpgG~l~i~e 291 (357)
..+..... ...+|+++++.|||||+|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 33221111 2578999999999999999864
No 122
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.34 E-value=8.6e-13 Score=113.91 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=88.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCC--CCC-CC--CEEEeccccccC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFD--SVP-EG--DAILMKWILHCW 265 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~--~~p-~~--D~i~~~~~lh~~ 265 (357)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .+ |+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 35679999999999999999998 568999998 888887765 4689999999966 444 33 9999862
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+...+|++++++|||||+++.. +...+.+++.++++++||..+.+..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 2347799999999999999910 0112455788888999998877654
No 123
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.33 E-value=9.7e-13 Score=108.12 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=94.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC-CCCC-CEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS-VPEG-DAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-~p~~-D~i~~~~~lh~~ 265 (357)
++.+|||+|||+|-++..++...|+.+++++|+ +.+++.+++. ...++...|..+. .+.. |+|+...++|+.
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHlL 128 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPVL 128 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHhh
Confidence 578999999999999999999999999999999 8899888752 1223333676653 3343 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEee
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
++....+.++.+.|+|||.++..+.-.-.++. .+....-...|++.+ ...+.+++...
T Consensus 129 --~~~~~al~~v~~~L~pggvfISfptksl~Gr~-------------------~gm~~~Y~~~~~~~~-~~~~~~~~~~~ 186 (200)
T 3fzg_A 129 --KQQDVNILDFLQLFHTQNFVISFPIKSLSGKE-------------------KGMEENYQLWFESFT-KGWIKILDSKV 186 (200)
T ss_dssp --HHTTCCHHHHHHTCEEEEEEEEEECCCCC--C-------------------TTCCCCHHHHHHHHT-TTTSCEEEEEE
T ss_pred --hhhHHHHHHHHHHhCCCCEEEEeChHHhcCCC-------------------cchhhhHHHHHHHhc-cCcceeeeeee
Confidence 55567777999999999999887732211111 122233456777777 44556666655
Q ss_pred cC
Q 018366 346 CV 347 (357)
Q Consensus 346 ~~ 347 (357)
.+
T Consensus 187 ~~ 188 (200)
T 3fzg_A 187 IG 188 (200)
T ss_dssp ET
T ss_pred eC
Confidence 53
No 124
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=111.12 Aligned_cols=140 Identities=11% Similarity=0.026 Sum_probs=94.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hH----HHHhCCCCCCceEEEcCCCCC--CC--C-C-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFDS--VP--E-G-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~--~p--~-~-D~i~~~ 259 (357)
+.+..+|||+|||+|.++..+++.+ |+.+++++|+ +. +++.++...+++++.+|+.++ ++ . . |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999998 44 344454457899999999872 22 2 3 999985
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
.. ..+....+++++.+.|||||++++.-........... . .+-..+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------~---------~~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASA----------E---------AVFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCH----------H---------HHHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCH----------H---------HHHHHH-HHHHHHCCCc
Confidence 44 2244567799999999999999994221100000000 0 000123 5888999999
Q ss_pred eeEEeecCCc---eeEEEE
Q 018366 340 HINFASCVCN---LYIMEF 355 (357)
Q Consensus 340 ~~~~~~~~~~---~~vie~ 355 (357)
+++....... ..++.+
T Consensus 211 ~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp EEEEEECTTTSSSEEEEEE
T ss_pred eEEEEecCCccCCcEEEEE
Confidence 9987665432 554444
No 125
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.32 E-value=3.6e-12 Score=106.46 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=92.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC--C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE--G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~--~ 253 (357)
.++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. +++.+..+|+.++++. .
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 3445455 5667899999999999999999987 68899998 7777766541 5789999998763332 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
|+|++..+++++ ..+++++.+.|+|||++++..... .+..++.++
T Consensus 101 ~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~ 146 (192)
T 1l3i_A 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMEC 146 (192)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHH
Confidence 999999887653 688999999999999999865421 024567788
Q ss_pred HHHcCCce
Q 018366 333 AIAAGFKH 340 (357)
Q Consensus 333 l~~aGf~~ 340 (357)
+++.||..
T Consensus 147 l~~~g~~~ 154 (192)
T 1l3i_A 147 LRDLGFDV 154 (192)
T ss_dssp HHHTTCCC
T ss_pred HHHCCCce
Confidence 99999944
No 126
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.31 E-value=7.1e-12 Score=113.02 Aligned_cols=129 Identities=14% Similarity=0.185 Sum_probs=93.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC-CC--CC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD-SV--PE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~-~~--p~-~-D~i 256 (357)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3567999999999999999998877789999998 777776653 2679999999876 21 33 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 257 LMKWILHCWDDDHC--LRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 257 ~~~~~lh~~~~~~~--~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
++....+..+.... .+++++++++|||||++++..... +. ...+..++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~-----------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WL-----------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TT-----------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------cc-----------chHHHHHHHHHHH
Confidence 99777666543333 589999999999999999864210 00 0113567889999
Q ss_pred HcCCceeEEeec
Q 018366 335 AAGFKHINFASC 346 (357)
Q Consensus 335 ~aGf~~~~~~~~ 346 (357)
++||..++....
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998877543
No 127
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.30 E-value=2.4e-12 Score=109.30 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=74.7
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-CEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-DAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D~i~~~~~lh~~ 265 (357)
..+|||+|||+|.++..++..+|+.+++++|. +.+++.+++. .++++..+|+.+..+. . |+|++.. ++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~-~~-- 142 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA-FA-- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC-SS--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec-cC--
Confidence 57999999999999999999999999999998 7777766541 3599999999884343 3 9999754 22
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+...+++++.+.|+|||++++..
T Consensus 143 ---~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 143 ---SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 34689999999999999999963
No 128
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.30 E-value=3.9e-12 Score=106.09 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=75.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC--CCC-CC-CEEEec-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD--SVP-EG-DAILMK- 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~p-~~-D~i~~~- 259 (357)
.++..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. ++++++..|+.. ..+ .. |+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 346689999999999999999988 678999998 8888887652 578999877655 233 33 999876
Q ss_pred cccccC------ChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 260 WILHCW------DDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 260 ~~lh~~------~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
..+++. ..+....+|+++.+.|||||+++++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 333320 2256678999999999999999997653
No 129
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.30 E-value=5.3e-12 Score=116.97 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=86.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------CCceEEEcCCCCCCCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFDSVPEG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~p~~ 253 (357)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .++++..+|+.++++.+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566666 44458999999999999999999999999999999 7788877652 14788999999876653
Q ss_pred --CEEEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 --DAILMKWILHC---WDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 --D~i~~~~~lh~---~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++...+|+ .++....++++++.+.|||||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999999885 3345556899999999999999999653
No 130
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.29 E-value=5.6e-11 Score=102.29 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=96.2
Q ss_pred HHHhhcc--cCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHH----HHhCCCCCCceEEEcCCCCCC-----
Q 018366 184 RILEHYE--GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFDSV----- 250 (357)
Q Consensus 184 ~i~~~l~--~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~~----- 250 (357)
.++..++ .+++..+|||+|||+|.++..+++. .|+.+++++|+ +.+ ++.+++..++.++.+|+..+.
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSV 143 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhcc
Confidence 4444443 1567789999999999999999986 46779999998 655 344444578999999987621
Q ss_pred CCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018366 251 PEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEF 329 (357)
Q Consensus 251 p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 329 (357)
+.. |+|++.... + .....+++.+++.|||||+|++.......+. +....+ ..++.
T Consensus 144 ~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~-------------------t~~~~e-~~~~~ 199 (232)
T 3id6_C 144 VENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDV-------------------TKDPKE-IYKTE 199 (232)
T ss_dssp CCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSSS-STTHH
T ss_pred ccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCccc-------------------CCCHHH-HHHHH
Confidence 223 999886543 2 2333445666679999999999732211100 001111 12345
Q ss_pred HHHHHHcCCceeEEeecCC---ceeEEEEe
Q 018366 330 TELAIAAGFKHINFASCVC---NLYIMEFF 356 (357)
Q Consensus 330 ~~ll~~aGf~~~~~~~~~~---~~~vie~~ 356 (357)
.+.|+++||++++...... .+.++.++
T Consensus 200 ~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 200 VEKLENSNFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp HHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred HHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence 5677889999999887743 35555443
No 131
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.29 E-value=1.7e-11 Score=108.69 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=97.0
Q ss_pred HHHHHhhcccCC-CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHh-CCCCCCceEEE-cCCCC----CCCC-
Q 018366 182 MERILEHYEGFQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD-APSYAGVEHVG-GNMFD----SVPE- 252 (357)
Q Consensus 182 ~~~i~~~l~~~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~v~~~~-~D~~~----~~p~- 252 (357)
...+++.+. .. +..+|||||||||.++..+++. +..+++++|+ +.|++. .+..+++.... .|+.. .+|.
T Consensus 73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 345666665 33 4569999999999999998887 4458999998 777776 34445654433 34332 2343
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe-eccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018366 253 -GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN-SIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT 330 (357)
Q Consensus 253 -~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 330 (357)
.|+|++..++|++ ..+|++++++|||||+++++- +-.+..+. .........|. ..+.++.+++.
T Consensus 151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~--~~~~~G~vrd~-------~~~~~~~~~v~ 216 (291)
T 3hp7_A 151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGRE--QIGKNGIVRES-------SIHEKVLETVT 216 (291)
T ss_dssp CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGG--GCC-CCCCCCH-------HHHHHHHHHHH
T ss_pred CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChh--hcCCCCccCCH-------HHHHHHHHHHH
Confidence 3999998888765 578999999999999999862 11111000 00000000000 01123678899
Q ss_pred HHHHHcCCceeEEeecC
Q 018366 331 ELAIAAGFKHINFASCV 347 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~~ 347 (357)
++++++||.+..+...+
T Consensus 217 ~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 217 AFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHTTEEEEEEEECS
T ss_pred HHHHHCCCEEEEEEECC
Confidence 99999999998876654
No 132
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.29 E-value=4.4e-12 Score=111.50 Aligned_cols=127 Identities=13% Similarity=0.169 Sum_probs=96.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~ 252 (357)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. +++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 45666666 667789999999999999999998 67889999998 7777766542 579999999988 4665
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT 330 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 330 (357)
+ |+|++ +++ +...+|+++.++|+|||++++..+..+ ...++.
T Consensus 165 ~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVAL-----DLM--EPWKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCc--CHHHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 99997 333 234789999999999999999774210 123555
Q ss_pred HHHHHcCCceeEEeec
Q 018366 331 ELAIAAGFKHINFASC 346 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~ 346 (357)
+.++++||..+++...
T Consensus 209 ~~l~~~gf~~~~~~~~ 224 (258)
T 2pwy_A 209 RAAEAHPFRLERVLEV 224 (258)
T ss_dssp HHHTTTTEEEEEEEEE
T ss_pred HHHHHCCCceEEEEEe
Confidence 6777889988776553
No 133
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.28 E-value=8.5e-12 Score=110.49 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=78.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEEeccccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAILMKWILH 263 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~~~~~lh 263 (357)
++++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++. .+++++.+|+.+..... |+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 66789999999999988877667778999999999 8899888753 68999999998721223 99998654
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. ++..++++++++.|||||+|++.+.
T Consensus 198 -~--~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 -A--EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp -C--SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred -c--cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 4567999999999999999999763
No 134
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.28 E-value=1.2e-11 Score=102.47 Aligned_cols=120 Identities=11% Similarity=0.115 Sum_probs=92.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~-D 254 (357)
.+++.++ ..+..+|||+|||+|.++..+++ +..+++++|+ +.+++.+++. ++++++.+|+.++++. . |
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 4555555 55677999999999999999998 7789999998 7788777653 5799999998875553 3 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
+|++..+ .+...+++++++. |||++++...... +..++.+.++
T Consensus 103 ~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT------KNIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFE 145 (183)
T ss_dssp EEEECSC------SCHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHH
T ss_pred EEEECCc------ccHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHH
Confidence 9999888 3346889999888 9999999764210 1356778899
Q ss_pred HcCCceeEE
Q 018366 335 AAGFKHINF 343 (357)
Q Consensus 335 ~aGf~~~~~ 343 (357)
++||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999876554
No 135
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.28 E-value=3.3e-12 Score=111.24 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=92.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CC----CCC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SV----PEG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~----p~~-D~i~~~ 259 (357)
.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++. .+++++.+|+.+ +. +.. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 3567999999999999999999889999999998 7787777642 469999999876 43 233 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
.+ .+...+++.+.++|||||++++....... ...+++.+.++++||.
T Consensus 149 ~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV------ARLSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC------SCHHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred cc------CCHHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence 63 34578999999999999999986321100 0134667888999999
Q ss_pred eeEEee
Q 018366 340 HINFAS 345 (357)
Q Consensus 340 ~~~~~~ 345 (357)
+++...
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887654
No 136
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.28 E-value=2.3e-12 Score=118.32 Aligned_cols=110 Identities=18% Similarity=0.277 Sum_probs=88.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCCCC-CE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVPEG-DA 255 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p~~-D~ 255 (357)
+.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. ..++++.+|+.+..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34566664 33456999999999999999999999989999998 7778777642 24678899988744444 99
Q ss_pred EEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 256 ILMKWILHC---WDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 256 i~~~~~lh~---~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+++.++|+ ...+...++|++++++|||||+++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 999999986 23466789999999999999999998753
No 137
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.28 E-value=3.4e-13 Score=118.52 Aligned_cols=145 Identities=10% Similarity=0.041 Sum_probs=95.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC----CCC----CC-CEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD----SVP----EG-DAI 256 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~----~~p----~~-D~i 256 (357)
+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 457999999999999999999888889999998 8888877642 359999999543 444 23 999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCcc
Q 018366 257 LMKWILHCWDD-------------DHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRE 323 (357)
Q Consensus 257 ~~~~~lh~~~~-------------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (357)
++.-.+|+... +....++++++++|||||.+.+++...... ..............+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~---------~~~l~~~g~~~~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS---------LQLKKRLRWYSCMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH---------HHHGGGBSCEEEEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH---------HhcccceEEEEECCCCh
Confidence 99876665431 112356788999999999998876543210 00000000000112334
Q ss_pred CCHHHHHHHHHHcCCceeEEeecC
Q 018366 324 RTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 324 ~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 456899999999999998876654
No 138
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.28 E-value=4.4e-12 Score=106.84 Aligned_cols=102 Identities=12% Similarity=0.162 Sum_probs=80.0
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-C-CC-CC-CEEEe
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-S-VP-EG-DAILM 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~p-~~-D~i~~ 258 (357)
.++..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4566799999999999999999986 6779999998 7888877652 579999999876 2 33 33 99998
Q ss_pred ccccc-------cCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 259 KWILH-------CWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 259 ~~~lh-------~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
...+. ....++..++++++.++|||||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 76551 112235668999999999999999998754
No 139
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.27 E-value=5.5e-12 Score=111.16 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=78.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCC--CEEEeccccccCChhH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEG--DAILMKWILHCWDDDH 269 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~~~ 269 (357)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5679999999999999999987 468999998 7888877653222388899887 56544 999998877766433
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeec
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
...+|++++++|||||++++....
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 789999999999999999997754
No 140
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.27 E-value=1.9e-11 Score=107.73 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=97.9
Q ss_pred CC-CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CCC-C-CEEE
Q 018366 192 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VPE-G-DAIL 257 (357)
Q Consensus 192 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p~-~-D~i~ 257 (357)
.+ +..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+. ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999775 8999998 7888777652 4699999999872 333 3 9999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC
Q 018366 258 MKWILHCW------------------DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG 319 (357)
Q Consensus 258 ~~~~lh~~------------------~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (357)
++-.++.. .......+++.+.+.|||||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 96544322 113456899999999999999999531 1
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEeecC------CceeEEEEe
Q 018366 320 GGRERTKKEFTELAIAAGFKHINFASCV------CNLYIMEFF 356 (357)
Q Consensus 320 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vie~~ 356 (357)
....++...+++.||...++.+.. ....+++++
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 217 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGI 217 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEE
Confidence 124567788899999988765542 234466654
No 141
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.27 E-value=2.7e-11 Score=102.31 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=79.7
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC--CCeEEEeechHHHHhCCCCCCceEEEcCCCC-C---------
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-S--------- 249 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------- 249 (357)
+.++.+.+..+.+..+|||+|||+|.++..+++.+| +.+++++|+.++. ..++++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccc
Confidence 345555555345678999999999999999999988 6899999985531 23579999999987 3
Q ss_pred ----------------CCC-C-CEEEeccccccCC----hhH-----HHHHHHHHHHhCCCCCEEEEEe
Q 018366 250 ----------------VPE-G-DAILMKWILHCWD----DDH-----CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 250 ----------------~p~-~-D~i~~~~~lh~~~----~~~-----~~~~L~~~~~~LkpgG~l~i~e 291 (357)
++. . |+|++...+|+.. +.. ...+|++++++|||||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 3 9999988877632 111 1248999999999999998843
No 142
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.27 E-value=2.1e-11 Score=104.09 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=98.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC---CCEEEecccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE---GDAILMKWIL 262 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~---~D~i~~~~~l 262 (357)
+..+|+|||||+|.++..+++..|..+++++|+ +.+++.|++. ++|+++.+|.+++++. .|+|++.++
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~- 93 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM- 93 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE-
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC-
Confidence 557999999999999999999999889999998 7788777652 4799999999886552 399887664
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
..+-...+|....+.|+|+|++++.-. ...+.++++|.+.||.+++
T Consensus 94 ---Gg~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------~~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 94 ---GGRLIARILEEGLGKLANVERLILQPN-------------------------------NREDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp ---CHHHHHHHHHHTGGGCTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEEE
T ss_pred ---ChHHHHHHHHHHHHHhCCCCEEEEECC-------------------------------CCHHHHHHHHHHCCCEEEE
Confidence 334567999999999999999888221 1356788999999999987
Q ss_pred Eee--cCCc-eeEEEEe
Q 018366 343 FAS--CVCN-LYIMEFF 356 (357)
Q Consensus 343 ~~~--~~~~-~~vie~~ 356 (357)
..- ..+. +.+|.+.
T Consensus 140 e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 140 ESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEETTEEEEEEEEE
T ss_pred EEEEEECCEEEEEEEEE
Confidence 643 2333 3355543
No 143
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.26 E-value=2.5e-12 Score=110.34 Aligned_cols=99 Identities=9% Similarity=0.180 Sum_probs=77.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCC----CCCC--CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDS----VPEG--DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~----~p~~--D~i~~~~ 260 (357)
+..+|||||||+|.++..+++.+|+..++++|+ +.+++.+++ ..++.++.+|+.+. ++.+ |.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 456999999999999999999999999999999 777776653 25799999998762 5554 9998875
Q ss_pred ccccCChhHH------HHHHHHHHHhCCCCCEEEEEee
Q 018366 261 ILHCWDDDHC------LRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 ~lh~~~~~~~------~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
...+...... ..++++++++|||||++++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 4433222221 2599999999999999998653
No 144
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.26 E-value=5.7e-12 Score=104.24 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=83.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CC---CCC--CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SV---PEG--DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~---p~~--D~i~~~~~l 262 (357)
..+..+|||||||. +.+|. +.|++.++++ .+++++.+|+.+ +. +.+ |+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56778999999996 12776 7788877653 359999999987 44 443 999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018366 263 HCW-DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGF 338 (357)
Q Consensus 263 h~~-~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 338 (357)
||+ ++. .++|++++++|||||++++.++...... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence 998 543 6899999999999999999765432210 01223578999999999999
No 145
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.25 E-value=3.1e-11 Score=112.93 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=85.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhC-------CC--------CCCceEEEcCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PS--------YAGVEHVGGNM 246 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~v~~~~~D~ 246 (357)
..+++.+. ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+++++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 35566565 66778999999999999999999888778999998 6666555 32 25789988764
Q ss_pred CC-C--C---CC-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC
Q 018366 247 FD-S--V---PE-GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI 297 (357)
Q Consensus 247 ~~-~--~---p~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~ 297 (357)
+. + + .. .|+|++.++++ . ++....|+++.+.|||||+|++.+.+.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~-~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc-c--ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 43 2 2 12 39999987773 2 567788999999999999999998776653
No 146
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.24 E-value=4e-11 Score=102.56 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=101.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC-C--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP-E-- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p-~-- 252 (357)
.+.+.++ +..+|+|||||+|.++..+++..|..+++++|+ +.+++.|++. ++|+++.+|.++..+ .
T Consensus 14 ~i~~~v~---~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~ 90 (230)
T 3lec_A 14 KVANYVP---KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADN 90 (230)
T ss_dssp HHHTTSC---TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred HHHHhCC---CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccc
Confidence 4444443 567999999999999999999988888999998 7788877652 579999999998443 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.|+|++.++. .+-...+|....+.|+++|+|++.-. ...+.+++|
T Consensus 91 ~D~IviaGmG----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~ 135 (230)
T 3lec_A 91 IDTITICGMG----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKW 135 (230)
T ss_dssp CCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHH
T ss_pred cCEEEEeCCc----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHH
Confidence 3998876654 35577899999999999999888321 126788999
Q ss_pred HHHcCCceeEEeec--CC-ceeEEEEe
Q 018366 333 AIAAGFKHINFASC--VC-NLYIMEFF 356 (357)
Q Consensus 333 l~~aGf~~~~~~~~--~~-~~~vie~~ 356 (357)
|.+.||.+++-.-. .+ .+.+|.+.
T Consensus 136 L~~~Gf~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 136 LAANDFEIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp HHHTTEEEEEEEEEEC--CEEEEEEEE
T ss_pred HHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 99999999876432 33 34466553
No 147
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.23 E-value=8.6e-12 Score=114.69 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=85.4
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D 254 (357)
.+++.+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +.+.. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4566555 446679999999999999998886 55689999985566655431 579999999988 55655 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
+|++..+++|+..+.....+.++++.|||||++++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999999999988787888999999999999999854
No 148
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.23 E-value=1e-11 Score=110.48 Aligned_cols=128 Identities=15% Similarity=0.200 Sum_probs=96.9
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~ 252 (357)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.+.++.
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 345666665 667789999999999999999999 67889999998 7777776542 4689999999876554
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFT 330 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 330 (357)
. |+|++. .+ +...+|+++.++|+|||++++.+...+ ...++.
T Consensus 180 ~~~D~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~ 223 (277)
T 1o54_A 180 KDVDALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 223 (277)
T ss_dssp CSEEEEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CccCEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 999972 32 334889999999999999999764210 123455
Q ss_pred HHHHHcCCceeEEeec
Q 018366 331 ELAIAAGFKHINFASC 346 (357)
Q Consensus 331 ~ll~~aGf~~~~~~~~ 346 (357)
+.++++||..++....
T Consensus 224 ~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 224 KKLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHHSSEEEEEEECC
T ss_pred HHHHHCCCceeEEEEE
Confidence 6777889887776553
No 149
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.23 E-value=3.7e-11 Score=105.09 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=78.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCCC--C-CEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVPE--G-DAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p~--~-D~i 256 (357)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++|+++.+|+.+ ..+. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34568999999999999999999998 789999999 7788776642 479999999865 2322 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 257 LMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 257 ~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
++... .+....+|+++.+.|||||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 98542 3556789999999999999998866654
No 150
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.23 E-value=2e-11 Score=100.45 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=82.5
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeechHHHHhCCCCCCceEEEcCCCC-C--------CCCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFD-S--------VPEG 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------~p~~ 253 (357)
.+++.+....+..+|||+|||+|.++..+++.+ |+.+++++|+.++++ ..+++++.+|+.+ + ++.+
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 455555434566799999999999999999984 778999999844432 2679999999987 4 5543
Q ss_pred --CEEEeccccccCChhH---------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 --DAILMKWILHCWDDDH---------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~---------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++..++|+.+... ...+++++.+.|+|||++++...
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999988765431 15899999999999999998765
No 151
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.23 E-value=1.3e-11 Score=106.10 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=77.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC-------C-CCE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP-------E-GDA 255 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p-------~-~D~ 255 (357)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+..+ . .|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 3567999999999999999999998 789999998 7777776541 469999999875211 2 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|++.... +....+++++.+.|+|||++++.+...
T Consensus 137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9876542 455789999999999999888866654
No 152
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.23 E-value=2.3e-11 Score=106.57 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=84.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhh--CCCCeEEEeec-hHHHHhCCCC---C-------C------------
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY---A-------G------------ 238 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------~------------ 238 (357)
.+++.++ ..+..+|||+|||+|.++..+++. .+..+++++|+ +.+++.+++. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444443 234579999999999999999998 77788999999 8888877631 2 2
Q ss_pred -------------ce-------------EEEcCCCCCC------CC-C-CEEEeccccccCCh-------hHHHHHHHHH
Q 018366 239 -------------VE-------------HVGGNMFDSV------PE-G-DAILMKWILHCWDD-------DHCLRILKNC 277 (357)
Q Consensus 239 -------------v~-------------~~~~D~~~~~------p~-~-D~i~~~~~lh~~~~-------~~~~~~L~~~ 277 (357)
++ ++.+|+++.. +. . |+|+++..++...+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 9999998854 33 3 99999877665432 5667999999
Q ss_pred HHhCCCCCEEEEEeec
Q 018366 278 YKAIPDNGKVIVMNSI 293 (357)
Q Consensus 278 ~~~LkpgG~l~i~e~~ 293 (357)
+++|+|||+++++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999996544
No 153
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.23 E-value=2.8e-11 Score=104.67 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=87.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-CCCceE--------EE-cCCCCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEH--------VG-GNMFDSVP 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~--------~~-~D~~~~~p 251 (357)
..+++.++......+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ .+++.. .. .|+..+.+
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 4555556522345699999999999999999883 348999998 777766443 233322 22 22211111
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018366 252 EGDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTE 331 (357)
Q Consensus 252 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 331 (357)
|.+.+..++.++ ..+|++++++|||||++++.. .+. ...........-..........+.+++.+
T Consensus 105 --d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~l~~ 169 (232)
T 3opn_A 105 --SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEKVLK 169 (232)
T ss_dssp --SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHHHHH
T ss_pred --CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHHHHH
Confidence 444444444443 578999999999999999853 110 00000000000000000011236889999
Q ss_pred HHHHcCCceeEEeecC
Q 018366 332 LAIAAGFKHINFASCV 347 (357)
Q Consensus 332 ll~~aGf~~~~~~~~~ 347 (357)
+++++||++..+...+
T Consensus 170 ~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 170 TATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEEcc
Confidence 9999999998876543
No 154
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.22 E-value=3.9e-11 Score=100.41 Aligned_cols=99 Identities=11% Similarity=-0.014 Sum_probs=79.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---CC-CC-CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS---VP-EG-DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~p-~~-D~i~~~~~ 261 (357)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+ .. |+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 4579999999999999988775 4557999998 8888877652 4799999998772 32 33 99999888
Q ss_pred cccCChhHHHHHHHHHHH--hCCCCCEEEEEeecc
Q 018366 262 LHCWDDDHCLRILKNCYK--AIPDNGKVIVMNSIV 294 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~--~LkpgG~l~i~e~~~ 294 (357)
+|+. .++..++++.+.+ +|+|||++++.....
T Consensus 123 ~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 6653 4677899999999 999999999977644
No 155
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.22 E-value=2.4e-11 Score=105.41 Aligned_cols=100 Identities=13% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC------------CCCCceEEEcCCCCC----CCCC--
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFDS----VPEG-- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~D~~~~----~p~~-- 253 (357)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...++.++.+|+.+. ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 3456899999999999999999999999999999 77776542 235799999999862 4444
Q ss_pred CEEEeccccccCChhH------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 DAILMKWILHCWDDDH------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|.|++...-.+..... ...+|++++++|||||+|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 8887644322211000 14799999999999999998643
No 156
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.22 E-value=4.7e-11 Score=106.29 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=92.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~~l 262 (357)
++..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p- 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence 35679999999999999999999876 8999998 8888877642 3589999999884333 3 99988543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeE
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHIN 342 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 342 (357)
.....+++++.+.|||||++++.+...... ......+++.+.++++||+...
T Consensus 202 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred -----hhHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 222578999999999999999988753210 0112467788999999998766
No 157
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.22 E-value=1.3e-11 Score=117.85 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=86.9
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~ 253 (357)
...+++.+. ..+..+|||||||+|.++..+++ .+..+++++|+.++++.+++. ++|+++.+|+.+ +.+..
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345666665 44567999999999999998887 567799999995577666541 579999999988 66655
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
|+|++..++|++.+++....+.++++.|||||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999888988878888899999999999999985
No 158
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.21 E-value=1.1e-11 Score=108.44 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=92.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCC----CC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVP----EG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p----~~-D~i~~~ 259 (357)
.+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+|+++.+|+.+ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4567999999999999999999999999999998 7777777642 469999999876 321 23 999986
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
.+- +...+++.+.+.|||||++++....... -...++.+.++..||.
T Consensus 159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 542 3468899999999999999985531100 0123466777888999
Q ss_pred eeEEeec
Q 018366 340 HINFASC 346 (357)
Q Consensus 340 ~~~~~~~ 346 (357)
..++.+.
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8887654
No 159
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.19 E-value=3e-11 Score=103.19 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=80.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC-C-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP-E-G 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p-~-~ 253 (357)
.+++.+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. +++++..+|+..+.+ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4555554 5567899999999999999999987 6678999998 7787777642 569999999866554 2 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 -DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 -D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++..++|+++ +++.+.|||||++++...
T Consensus 147 fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred eeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 9999999999985 378899999999999754
No 160
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.19 E-value=3.5e-11 Score=102.38 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=79.6
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCCCCC-C-C-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFDSVP-E-G- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~p-~-~- 253 (357)
.++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|..+..+ . .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 4455555 567789999999999999999998 568899998 778877764 2479999999988433 2 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
|+|++..++|++++ .+.+.|||||++++....
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999864 578899999999996653
No 161
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.18 E-value=9.4e-11 Score=101.11 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=101.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC-C--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP-E-- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p-~-- 252 (357)
.+.+.++ +..+|+|||||+|.++..+++..|..+++++|+ +.+++.|++. ++|++..+|.++.++ .
T Consensus 14 ~i~~~v~---~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~ 90 (244)
T 3gnl_A 14 KVASYIT---KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDA 90 (244)
T ss_dssp HHHTTCC---SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred HHHHhCC---CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcccc
Confidence 4444443 567999999999999999999988888999998 7788777652 469999999998443 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 253 GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.|+|++.++. .+-...+|....+.|+++++|++.-. ...+.++++
T Consensus 91 ~D~IviagmG----g~lI~~IL~~~~~~L~~~~~lIlq~~-------------------------------~~~~~lr~~ 135 (244)
T 3gnl_A 91 IDTIVIAGMG----GTLIRTILEEGAAKLAGVTKLILQPN-------------------------------IAAWQLREW 135 (244)
T ss_dssp CCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHH
T ss_pred ccEEEEeCCc----hHHHHHHHHHHHHHhCCCCEEEEEcC-------------------------------CChHHHHHH
Confidence 3998876543 35577899999999999999888321 125678899
Q ss_pred HHHcCCceeEEe--ecCC-ceeEEEEe
Q 018366 333 AIAAGFKHINFA--SCVC-NLYIMEFF 356 (357)
Q Consensus 333 l~~aGf~~~~~~--~~~~-~~~vie~~ 356 (357)
|.+.||.+++-. ...+ ++.+|.+.
T Consensus 136 L~~~Gf~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 136 SEQNNWLITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp HHHHTEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 999999986643 2233 33355543
No 162
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.18 E-value=2.4e-11 Score=104.39 Aligned_cols=98 Identities=11% Similarity=0.205 Sum_probs=78.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCC-----CC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVP-----EG-D 254 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p-----~~-D 254 (357)
.++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++. ++++++.+|+.+ ..+ .. |
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3567999999999999999999865 789999998 8888877652 469999999754 222 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+|++....+++ ....++++.+ +.|||||+|++.+..
T Consensus 137 ~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 99998888777 4455778888 999999999886554
No 163
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.18 E-value=5.7e-11 Score=108.78 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=78.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCC-C-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPE-G- 253 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~-~- 253 (357)
.+.+.+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ ++|. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 4445444 456679999999999999999887 44589999985577766542 679999999988 6664 3
Q ss_pred CEEEeccccccC-ChhHHHHHHHHHHHhCCCCCEEE
Q 018366 254 DAILMKWILHCW-DDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 254 D~i~~~~~lh~~-~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
|+|++..+.+.+ .......+|+++.+.|||||+++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999987743222 12456789999999999999987
No 164
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.16 E-value=9.6e-11 Score=101.65 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=75.7
Q ss_pred CceEEEEcCCcchHHHHHHhh----CCCCeEEEeec-hHHHHhCCC-CCCceEEEcCCCCC--CC---C-C-CEEEeccc
Q 018366 195 VERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDS--VP---E-G-DAILMKWI 261 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~--~p---~-~-D~i~~~~~ 261 (357)
+.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++.+|..+. ++ . . |+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 469999999999999999987 68899999999 788777764 36899999998773 22 2 2 99987654
Q ss_pred cccCChhHHHHHHHHHHH-hCCCCCEEEEEee
Q 018366 262 LHCWDDDHCLRILKNCYK-AIPDNGKVIVMNS 292 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~-~LkpgG~l~i~e~ 292 (357)
| .+...+|+++.+ .|||||+|++.+.
T Consensus 162 -~----~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 -H----ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp -C----SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred -h----HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 245689999997 9999999999664
No 165
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.15 E-value=2.4e-11 Score=104.46 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=100.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCC-CC-CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVP-EG-DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p-~~-D~i~~~~~lh~ 264 (357)
..+.+|||||||.|-++..+....|+.+++++|+ +.+++.+++. .+..+...|+....| .. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 3578999999999999999999999999999999 7888877652 457888899988444 33 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
..++.....+ ++.+.|+|+|.++..+.-.-.++.. +....-.+.|++.+.+.|....++.
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~-------------------gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSK-------------------GMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC--------------------------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCc-------------------chhhHHHHHHHHHHHhcCCceeeee
Confidence 9777666777 9999999999888877621111110 1112236789999999999655554
Q ss_pred e
Q 018366 345 S 345 (357)
Q Consensus 345 ~ 345 (357)
-
T Consensus 271 ~ 271 (281)
T 3lcv_B 271 I 271 (281)
T ss_dssp E
T ss_pred e
Confidence 4
No 166
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.15 E-value=1.9e-11 Score=105.83 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=78.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC----CC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP----EG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p----~~-D~i~~~ 259 (357)
.+..+|||||||+|..+..+++..|+.+++++|+ +.+++.+++. ++++++.+|+.+..+ .. |+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 3567999999999999999999888999999998 8888777642 479999999987433 33 999875
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
... +....+++++.+.|||||+|++-+...
T Consensus 150 ~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp TTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred CcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 432 445789999999999999998855544
No 167
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.15 E-value=3.5e-11 Score=104.84 Aligned_cols=97 Identities=14% Similarity=0.226 Sum_probs=77.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C-----CCC-CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V-----PEG-DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~-----p~~-D~ 255 (357)
++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++|+++.+|+.+. . +.. |+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 467999999999999999999886 789999998 7777666542 5799999998762 1 233 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
|++... ..+...+|+++.+.|||||+|++-+....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 987643 35567899999999999999999776654
No 168
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.14 E-value=3.9e-11 Score=110.02 Aligned_cols=103 Identities=14% Similarity=0.241 Sum_probs=79.2
Q ss_pred HHHHhhcccCCCCceEEEEcCC------cchHHHHHHhh-CCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCC--
Q 018366 183 ERILEHYEGFQNVERLVDVGGG------FGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVP-- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p-- 251 (357)
+.++..+. .++.+||||||| +|..+..+++. +|+.+++++|+ +.+.. ..++++++.+|+.+ +++
T Consensus 207 e~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~ 281 (419)
T 3sso_A 207 DRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDR 281 (419)
T ss_dssp HHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHH
T ss_pred HHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhh
Confidence 34454443 346799999999 67667777665 59999999999 66532 34789999999987 444
Q ss_pred -----CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 252 -----EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 252 -----~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.. |+|++.. .|++ ++....|++++++|||||++++.|..
T Consensus 282 l~~~d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 282 IARRYGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhcccCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 23 9999864 5666 66789999999999999999998875
No 169
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.14 E-value=3.7e-11 Score=110.47 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=76.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC--CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG--DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~--D~i~~~~~l 262 (357)
.+..+|||||||+|.++..+++. +..+++++|+.++++.+++. ++++++.+|+.+ ++|.+ |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 35679999999999999999987 56689999986577766542 459999999998 67643 999997765
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 263 HCW-DDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 263 h~~-~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
+++ ..+....+++.+.++|||||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 543 234567899999999999999874
No 170
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.13 E-value=7.1e-11 Score=102.00 Aligned_cols=100 Identities=14% Similarity=0.228 Sum_probs=79.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCCCCC-C-C-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFDSVP-E-G-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~~p-~-~-D 254 (357)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+..+ . . |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34555555 5667899999999999999999986 68888998 7787776642 279999999987443 2 3 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+|++..++|++++ ++.+.|||||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 9999999999853 578899999999998653
No 171
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.13 E-value=4.3e-11 Score=109.55 Aligned_cols=104 Identities=14% Similarity=0.206 Sum_probs=78.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCC-----------------CCCceEE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS-----------------YAGVEHV 242 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~v~~~ 242 (357)
...++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++ ..+++++
T Consensus 94 ~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 94 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 344566565 667789999999999999999998 57789999998 777776654 1479999
Q ss_pred EcCCCCC---CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 243 GGNMFDS---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 243 ~~D~~~~---~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.+|+.+. ++.+ |+|++... .. ..+++++.+.|+|||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~-~~------~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDML-NP------HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECSS-ST------TTTHHHHGGGEEEEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECCC-CH------HHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999873 3443 99998432 11 23799999999999999987753
No 172
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.12 E-value=7.2e-11 Score=105.62 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=73.6
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCCC--CC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDSV--PE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~--p~-~-D~i 256 (357)
.++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+.. +. . |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 3567999999999999999999877788999998 888877653 358999999988733 22 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 018366 257 LMKWILHCWDDDHC--LRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 257 ~~~~~lh~~~~~~~--~~~L~~~~~~LkpgG~l~i~e 291 (357)
++...-+..+.... .++++.++++|+|||++++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 98554433322222 689999999999999999864
No 173
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.12 E-value=7.2e-11 Score=104.03 Aligned_cols=100 Identities=11% Similarity=0.200 Sum_probs=76.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcCCCCC--------CCC
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFDS--------VPE 252 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~--------~p~ 252 (357)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45667999999999999999999999989999998 7777665431 2589999999874 333
Q ss_pred -C-CEEEecccccc----------------CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 253 -G-DAILMKWILHC----------------WDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 253 -~-D~i~~~~~lh~----------------~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. |+|+++-.++. ........+++.+.+.|||||+++++.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 99999733322 222336789999999999999999854
No 174
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.12 E-value=6.9e-11 Score=102.46 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=80.9
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPE-G 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~-~ 253 (357)
...+++.+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .++++..+|+..+++. .
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 345566565 66778999999999999999999987 78999997 7777776642 4689999998555553 2
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 --DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|++..+++++++ ++.+.|||||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 99999999998853 67889999999998654
No 175
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.12 E-value=5e-11 Score=106.89 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=78.1
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC---CCCC-C-CEEEecccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD---SVPE-G-DAILMKWIL 262 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~p~-~-D~i~~~~~l 262 (357)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|..+ ..+. . |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999999 888887764 2589999999876 3333 3 999986544
Q ss_pred ccCChhH--HHHHHHHHHHhCCCCCEEEEEee
Q 018366 263 HCWDDDH--CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 263 h~~~~~~--~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+...... ..++++.+++.|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4332222 26899999999999999988654
No 176
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.12 E-value=4.8e-11 Score=104.27 Aligned_cols=94 Identities=16% Similarity=0.369 Sum_probs=72.4
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC--------------CCCCceEEEcCCCCC----CCCC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP--------------SYAGVEHVGGNMFDS----VPEG 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~D~~~~----~p~~ 253 (357)
++..+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ..+++.++.+|+.+. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4567999999999999999999999999999998 77776553 225799999998873 3333
Q ss_pred --CEEEeccccccCChhHH-----------HHHHHHHHHhCCCCCEEEEEe
Q 018366 254 --DAILMKWILHCWDDDHC-----------LRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 --D~i~~~~~lh~~~~~~~-----------~~~L~~~~~~LkpgG~l~i~e 291 (357)
|.|++. ++++.. ..+++++.++|+|||+|++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 666532 233321 489999999999999999953
No 177
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.11 E-value=9.3e-11 Score=108.88 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=82.7
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCCC-C
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-D 254 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D 254 (357)
.+..... ..+..+|||||||+|.++..+++.. ..+++++|..++++.+++. ++++++.+|+.+ +.+.. |
T Consensus 54 ~i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 131 (376)
T 3r0q_C 54 AVFQNKH-HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVD 131 (376)
T ss_dssp HHHTTTT-TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEE
T ss_pred HHHhccc-cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcce
Confidence 3444333 4567899999999999999999884 3489999987666666542 569999999988 56644 9
Q ss_pred EEEeccccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 255 AILMKWILHCWDD-DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 255 ~i~~~~~lh~~~~-~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
+|++..+.|+... .....+++.+.+.|||||++++.+..
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 9999776666543 34668999999999999999876654
No 178
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.11 E-value=5.4e-11 Score=98.34 Aligned_cols=107 Identities=10% Similarity=0.030 Sum_probs=79.9
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CCC
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VPE 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p~ 252 (357)
.+++.+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 44444432345679999999999999999987 5678999998 7888777642 3689999998762 223
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHH--HhCCCCCEEEEEeecc
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCY--KAIPDNGKVIVMNSIV 294 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~--~~LkpgG~l~i~e~~~ 294 (357)
. |+|++...++. ....++++.+. +.|+|||++++.....
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 3 99999876643 34567777777 8999999999976644
No 179
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.11 E-value=1e-10 Score=106.11 Aligned_cols=102 Identities=19% Similarity=0.293 Sum_probs=81.5
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC-C-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP-E- 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p-~- 252 (357)
..+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +++++.+++. ++++++.+|+.+..+ .
T Consensus 65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 34555555 56778999999999999999999887 477999998 7788777642 469999999987333 2
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
. |+|++..++|+++ +++.+.|||||++++....
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 3 9999999999985 4678899999999997543
No 180
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.10 E-value=5.4e-10 Score=99.55 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=72.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec--hHHHHhCCCC----------------CCceEEEcCCCCC---C-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSY----------------AGVEHVGGNMFDS---V- 250 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~~v~~~~~D~~~~---~- 250 (357)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. +++++...|..+. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 456799999999999999888763 347889998 5666654321 2678886654431 2
Q ss_pred ----CCC-CEEEeccccccCChhHHHHHHHHHHHhCC---C--CCEEEEE
Q 018366 251 ----PEG-DAILMKWILHCWDDDHCLRILKNCYKAIP---D--NGKVIVM 290 (357)
Q Consensus 251 ----p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~Lk---p--gG~l~i~ 290 (357)
+.. |+|++.+++|+. ++...+++.+.++|+ | ||+++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 233 999999999986 667899999999999 9 9998774
No 181
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.10 E-value=1.2e-10 Score=103.11 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=77.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCC-CCCCC--CEEEeccccccCCh
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFD-SVPEG--DAILMKWILHCWDD 267 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~ 267 (357)
.+..+|||||||+|.++..+++..|+.+++++|+ +.+++.+++. +++.+..+|+.+ +++.+ |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 3567999999999999999999988889999998 7888877653 678999999877 55543 999986653
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 268 DHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 268 ~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
..++++.++|||||++++.++..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24889999999999999987653
No 182
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.10 E-value=1.4e-10 Score=107.61 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=80.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC-CC-CC-CEEEecccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS-VP-EG-DAILMKWILHC 264 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-~p-~~-D~i~~~~~lh~ 264 (357)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+. .+ .. |+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4579999999999999999987 468899998 7788777652 2589999999883 33 23 99999999987
Q ss_pred ---CChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 265 ---WDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 265 ---~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
...+...++++++++.|||||+++++..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 3347788999999999999999999753
No 183
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.10 E-value=5e-11 Score=103.20 Aligned_cols=96 Identities=13% Similarity=0.203 Sum_probs=78.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC-----CCC-CEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV-----PEG-DAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-----p~~-D~i~~~ 259 (357)
+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+.. +.. |+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 467999999999999999999999889999998 7777776642 46999999987732 233 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
...+ +...+|+++.+.|+|||++++.+...
T Consensus 134 ~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 134 AAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp GGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 7654 45689999999999999999976543
No 184
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.09 E-value=2.4e-10 Score=101.68 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=80.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh-CCCCeEEEeec-hHHHHhCCC---------CCCceEEEcCCCC-C
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFD-S 249 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~ 249 (357)
...++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345666666 667789999999999999999985 57889999998 777776653 2479999999987 4
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 250 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 ~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
++.+ |+|++. .+ +...+|+++.++|+|||++++..+
T Consensus 167 ~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 5443 999882 22 223789999999999999999775
No 185
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.09 E-value=1.5e-10 Score=100.58 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C----------
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V---------- 250 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~---------- 250 (357)
.+..+|||||||+|..+..+++..| ..+++++|+ +.+++.+++. ++++++.+|+.+. .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 3567999999999999999999987 678999998 7777776542 3589999997652 1
Q ss_pred -----C-CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 251 -----P-EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 251 -----p-~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+ .. |+|++.... ++...+++++.+.|+|||++++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1 33 999987543 455688999999999999999976544
No 186
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.09 E-value=3.2e-11 Score=103.74 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=77.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CC-----CC-CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VP-----EG-DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p-----~~-D~ 255 (357)
+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+. .+ .. |+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 457999999999999999999988 789999998 7777776542 4699999998652 11 33 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
|++... .++...+++++.+.|||||+|++.+....
T Consensus 144 v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 144 IYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 986443 35567899999999999999999776543
No 187
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.09 E-value=3.2e-10 Score=95.00 Aligned_cols=106 Identities=17% Similarity=0.324 Sum_probs=77.0
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCC----------
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSV---------- 250 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~---------- 250 (357)
...++.+.+..+++..+|||+|||+|.++..+++. ..+++++|+.++ ...++++++.+|+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence 34566776664567789999999999999999988 678999998433 12367999999998732
Q ss_pred ----CCCCEEEeccccccCC----h-----hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 251 ----PEGDAILMKWILHCWD----D-----DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 251 ----p~~D~i~~~~~lh~~~----~-----~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+..|+|++........ + +....+|+.+.++|||||++++...
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2239999854322111 1 2245789999999999999997543
No 188
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.08 E-value=5e-10 Score=93.94 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=76.3
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC---------CeEEEeechHHHHhCCCCCCceEE-EcCCCC-C---
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ---------IKAVNFDLPHVVQDAPSYAGVEHV-GGNMFD-S--- 249 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~D~~~-~--- 249 (357)
++...+..+.+..+|||+|||+|.++..+++..+. .+++++|+.++. ..++++++ .+|+.+ +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHH
Confidence 44444443456789999999999999999999764 789999985431 23568899 899876 2
Q ss_pred -----CCC-C-CEEEecccccc----CChhH-----HHHHHHHHHHhCCCCCEEEEEee
Q 018366 250 -----VPE-G-DAILMKWILHC----WDDDH-----CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 -----~p~-~-D~i~~~~~lh~----~~~~~-----~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+. . |+|++...+|. ..+.. ...+++++.++|||||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 233 3 99998655443 11111 14889999999999999998654
No 189
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.08 E-value=2.7e-10 Score=101.56 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=74.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCC-CC---CEEEec--
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVP-EG---DAILMK-- 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p-~~---D~i~~~-- 259 (357)
+..+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++. ++++++.+|++++.+ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4569999999999999999999 9999999999 8888877642 359999999988443 35 999986
Q ss_pred ----------cccccCCh------hHHHHHHHHHH-HhCCCCCEEEE
Q 018366 260 ----------WILHCWDD------DHCLRILKNCY-KAIPDNGKVIV 289 (357)
Q Consensus 260 ----------~~lh~~~~------~~~~~~L~~~~-~~LkpgG~l~i 289 (357)
.+. |.+. ++...+++++. +.|+|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 233 2221 12237899999 99999999997
No 190
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.07 E-value=1.5e-10 Score=105.47 Aligned_cols=95 Identities=16% Similarity=0.268 Sum_probs=74.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC-------CCceEEEcCCCC-CCCC-C-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFD-SVPE-G-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~-~-D~i~~~~~lh 263 (357)
+..+|||||||+|.++..+++. +..+++++|..++++.+++. ++++++.+|+.+ +.|. . |+|++..+.+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 4579999999999999998886 44589999986677666541 569999999988 6663 3 9999986655
Q ss_pred cCC-hhHHHHHHHHHHHhCCCCCEEEE
Q 018366 264 CWD-DDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 264 ~~~-~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
++. ......+++.+.+.|||||+++.
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 432 24466899999999999999974
No 191
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.04 E-value=9.7e-11 Score=100.55 Aligned_cols=95 Identities=7% Similarity=0.124 Sum_probs=75.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCC---CC-CCC-CEEEec
Q 018366 195 VERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFD---SV-PEG-DAILMK 259 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~-p~~-D~i~~~ 259 (357)
..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|..+ .. +.. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999998 7787777541 479999999876 23 233 999886
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 WILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
... .+...+++++.+.|||||+|++-+..+
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 533 345678999999999999999965544
No 192
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.03 E-value=1e-10 Score=99.58 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=76.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC--CCCC-CCEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD--SVPE-GDAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~p~-~D~i~~~~~ 261 (357)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|..+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 457999999999999999999988 789999998 7888777642 469999999865 2222 488887632
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
..+...+++++.+.|||||++++.+...
T Consensus 136 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred -----hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 2455789999999999999999866544
No 193
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.03 E-value=1.2e-10 Score=96.86 Aligned_cols=107 Identities=9% Similarity=0.017 Sum_probs=78.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC-----
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV----- 250 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~----- 250 (357)
.+++.+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+..
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 34444432345679999999999999998874 5568999998 7888877652 46999999987621
Q ss_pred -CCC-CEEEeccccccCChhHHHHHHHHH--HHhCCCCCEEEEEeecc
Q 018366 251 -PEG-DAILMKWILHCWDDDHCLRILKNC--YKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 251 -p~~-D~i~~~~~lh~~~~~~~~~~L~~~--~~~LkpgG~l~i~e~~~ 294 (357)
+.. |+|++...++.. ....+++.+ .++|+|||++++.....
T Consensus 113 ~~~~fD~i~~~~~~~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TTCCEEEEEECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCCCEEEECCCCCch---hHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 233 999998876533 234556666 78899999999876543
No 194
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.03 E-value=6e-10 Score=98.10 Aligned_cols=105 Identities=15% Similarity=0.047 Sum_probs=73.8
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC--C------CceEE--EcCCCCCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFDSVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~~~p~ 252 (357)
..+.+. ..+.+..+|||+|||+|.++..+++. .+++++|+.++...+++. . ++.++ .+|+.+-.+.
T Consensus 64 ~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 139 (265)
T 2oxt_A 64 AWMEER-GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVE 139 (265)
T ss_dssp HHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCC
Confidence 344444 22456789999999999999999887 579999985464433322 2 68888 8998872133
Q ss_pred C-CEEEeccccccCChhH-----HHHHHHHHHHhCCCCC--EEEEEee
Q 018366 253 G-DAILMKWILHCWDDDH-----CLRILKNCYKAIPDNG--KVIVMNS 292 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~-----~~~~L~~~~~~LkpgG--~l~i~e~ 292 (357)
. |+|++... ++.+... ...+|+.+.++||||| .+++...
T Consensus 140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 3 99999776 4432221 1248999999999999 8888544
No 195
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.02 E-value=5.6e-10 Score=101.06 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=79.3
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C-CCCC-C
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S-VPEG-D 254 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~-~p~~-D 254 (357)
...++ ..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++. .+++++.+|+.+ + .+.. |
T Consensus 111 ~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 111 PVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp HHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCC
Confidence 33444 56678999999999999999999875 478999998 7777766542 468999999877 3 2333 9
Q ss_pred EEEec------cccccC-------ChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 255 AILMK------WILHCW-------DDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 255 ~i~~~------~~lh~~-------~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+|++. .++++. +.++ ..++|+++.+.|||||++++.+...
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 99873 334432 2222 1589999999999999999876543
No 196
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.02 E-value=6.9e-10 Score=102.25 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=84.0
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SVP 251 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p 251 (357)
.+..++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.+++. .++++..+|+.+ +.+
T Consensus 191 la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 191 LAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 3445555555 7778899999999999999999988 8889999998 8888877652 379999999988 433
Q ss_pred C-C-CEEEeccccccCCh--h----HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 252 E-G-DAILMKWILHCWDD--D----HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 252 ~-~-D~i~~~~~lh~~~~--~----~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. . |+|++.-....... . ....+++++++.|||||+++++.
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 3 99999654332111 1 23689999999999999999965
No 197
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.02 E-value=1.8e-10 Score=100.67 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=76.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC--C-C------CCC-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD--S-V------PEG- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------p~~- 253 (357)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++|+++.+|..+ + . +..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999987 789999998 7777776642 479999999865 2 2 233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|+|++... ..+...+++++.+.|||||+|++-+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 99998643 2456789999999999999998866443
No 198
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.01 E-value=4.1e-10 Score=95.99 Aligned_cols=95 Identities=8% Similarity=0.087 Sum_probs=78.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-CCCCC-CEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-SVPEG-DAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~ 264 (357)
..+.+|||||||.|-++..+. |..+++++|+ +.+++.+++. .++.+...|... +.|.. |++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 457899999999999999877 8889999999 8888877652 457788899988 55554 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
..+++....+ ++.+.|+|++.++...
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9766665666 8899999998877766
No 199
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.01 E-value=1.2e-09 Score=98.13 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=70.8
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-----hHHHHhCCC--C--CCceEEEc-CCCCCCCC-
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPS--Y--AGVEHVGG-NMFDSVPE- 252 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~--~--~~v~~~~~-D~~~~~p~- 252 (357)
.+.+. ..+++..+|||+|||+|.++..+++. .+++++|+ +.+++.... . ++|.++.+ |+.+..+.
T Consensus 73 ~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~ 148 (305)
T 2p41_A 73 WFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER 148 (305)
T ss_dssp HHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCC
Confidence 34444 32456689999999999999999987 36888887 433332221 2 56899999 88763233
Q ss_pred CCEEEeccccc---cCChhH-HHHHHHHHHHhCCCCCEEEEE
Q 018366 253 GDAILMKWILH---CWDDDH-CLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~D~i~~~~~lh---~~~~~~-~~~~L~~~~~~LkpgG~l~i~ 290 (357)
.|+|++...++ +..+.. ...+|+.++++|||||.+++.
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 39999976653 222221 226899999999999988873
No 200
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.00 E-value=3.3e-10 Score=97.63 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCC------CCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCCCCC-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYP------QIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDSVPE- 252 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p~- 252 (357)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..++++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45667999999999999999998765 368999998 777777654 24799999999876554
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 G--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 ~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+ |+|++...++++. +++.+.|||||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 3 9999999998874 578899999999998643
No 201
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.99 E-value=7.1e-10 Score=98.19 Aligned_cols=105 Identities=15% Similarity=0.048 Sum_probs=73.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCC--C------CceEE--EcCCCCCCCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFDSVPE 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~~~p~ 252 (357)
..+.+. ..+.+..+|||+|||+|.++..+++. .+++++|+.++...+++. . ++.++ .+|+.+-.+.
T Consensus 72 ~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 147 (276)
T 2wa2_A 72 AWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPF 147 (276)
T ss_dssp HHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCC
T ss_pred HHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCC
Confidence 344444 22456789999999999999999987 578999984464433322 2 68898 8998762133
Q ss_pred C-CEEEeccccccCChhH-----HHHHHHHHHHhCCCCC--EEEEEee
Q 018366 253 G-DAILMKWILHCWDDDH-----CLRILKNCYKAIPDNG--KVIVMNS 292 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~-----~~~~L~~~~~~LkpgG--~l~i~e~ 292 (357)
. |+|++... +..+... ...+|+.+.++||||| .+++...
T Consensus 148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 3 99999876 4432211 1247999999999999 8888443
No 202
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.99 E-value=1.4e-10 Score=98.11 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=74.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCC-C-C---CC-CCEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFD-S-V---PE-GDAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~-~---p~-~D~i~~ 258 (357)
+..+|||+|||+|.++..++.... .+++++|+ +.+++.+++. ++++++.+|+.+ . . .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 346999999999999998777653 47999998 7888877642 478999999876 2 1 23 499999
Q ss_pred ccccccCChhHHHHHHHHH--HHhCCCCCEEEEEeecc
Q 018366 259 KWILHCWDDDHCLRILKNC--YKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~--~~~LkpgG~l~i~e~~~ 294 (357)
...+| . .....+++.+ .++|+|||++++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 88755 3 4567888888 55799999999876543
No 203
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.98 E-value=1.6e-10 Score=94.60 Aligned_cols=95 Identities=17% Similarity=0.082 Sum_probs=72.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C-CceEEEcCCCCCCC------CC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFDSVP------EG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~p------~~-D~i~~~~ 260 (357)
+..+|||+|||+|.++..+++..++ ++++|+ +.+++.+++. . +++++.+|+.+..+ .. |+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4579999999999999999998765 888998 7888877652 2 78999999876211 13 9999988
Q ss_pred ccccCChhHHHHHHHHHH--HhCCCCCEEEEEeecc
Q 018366 261 ILHCWDDDHCLRILKNCY--KAIPDNGKVIVMNSIV 294 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~--~~LkpgG~l~i~e~~~ 294 (357)
.+| -..+ ++++.+. +.|+|||++++.....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 776 2223 4455555 9999999999876644
No 204
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.98 E-value=1.2e-09 Score=95.10 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=78.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCC-CC-
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSV-PE- 252 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-p~- 252 (357)
..++..++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. +++++..+|+.+.. +.
T Consensus 81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 34555555 566789999999999999999998 678999998 7777766542 57899999998854 44
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 253 G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. |+|++. .+ +...+++++.+.|+|||++++...
T Consensus 158 ~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp CBSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred cccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 999972 22 334789999999999999999775
No 205
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.98 E-value=3.2e-10 Score=101.10 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=77.0
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~ 257 (357)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3567999999999999999998878889999998 777776543 25799999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDDDHC--LRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~~~~--~~~L~~~~~~LkpgG~l~i~e 291 (357)
+....+..+.+.. .++++++++.|+|||++++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8554443333332 689999999999999999853
No 206
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.98 E-value=4.6e-10 Score=96.61 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=75.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-----CCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCCC----
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDSV---- 250 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~---- 250 (357)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4566899999999999999999986 5678999998 777776654 247999999988743
Q ss_pred C-C-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 251 P-E-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 251 p-~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+ . . |+|++...++++ ++++.+.|||||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 2 2 2 999999999876 4678899999999998754
No 207
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.98 E-value=3.7e-10 Score=102.75 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC---CCCC-C-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD---SVPE-G-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~p~-~-D~i 256 (357)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 3567999999999999999999888889999998 788877653 2579999999865 2333 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 018366 257 LMKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 257 ~~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~ 290 (357)
++....+..+.+. ..+++++++++|+|||++++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854422211121 368999999999999999985
No 208
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.97 E-value=8.3e-10 Score=94.91 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=74.5
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCCCC-C-C-CE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDSVP-E-G-DA 255 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p-~-~-D~ 255 (357)
..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++ ..+++++.+|+....+ . . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456799999999999999999885 6679999998 777776653 2478999999876332 2 3 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|++...++++ ++++.+.|||||++++...
T Consensus 155 i~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVV--------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSBBSSC--------CHHHHHTEEEEEEEEEEES
T ss_pred EEECCchHHH--------HHHHHHhcCCCcEEEEEEe
Confidence 9999988776 3578899999999999754
No 209
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.97 E-value=3.9e-10 Score=100.05 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=75.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~~ 258 (357)
++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 467999999999999999998877788999998 788776653 36899999998762 2233 99998
Q ss_pred ccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDH--CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~e 291 (357)
....+..+.+. ..++++++++.|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 55443322111 2578999999999999998853
No 210
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.97 E-value=2.2e-11 Score=105.98 Aligned_cols=134 Identities=14% Similarity=0.058 Sum_probs=93.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCC-C-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPE-G-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~-~-D~i~~~~~lh 263 (357)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 46799999999999999999874 78999998 8888877642 4799999999873233 3 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEE
Q 018366 264 CWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINF 343 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 343 (357)
+.++. ...+.+++++|+|||.+++....... +. ... + -......+++.+++...|...+..
T Consensus 156 ~~~~~--~~~~~~~~~~L~pgG~~i~~~~~~~~-~~------------~~~---~-lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYA--TAETFDIRTMMSPDGFEIFRLSKKIT-NN------------IVY---F-LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGG--GSSSBCTTTSCSSCHHHHHHHHHHHC-SC------------EEE---E-EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchh--hhHHHHHHhhcCCcceeHHHHHHhhC-Cc------------eEE---E-CCCCCCHHHHHHHhccCCCEEEEe
Confidence 87443 34677899999999985543211100 00 000 0 112235677888888777666655
Q ss_pred eecCC
Q 018366 344 ASCVC 348 (357)
Q Consensus 344 ~~~~~ 348 (357)
....+
T Consensus 217 ~~~~~ 221 (241)
T 3gdh_A 217 NFLNN 221 (241)
T ss_dssp EEETT
T ss_pred hhhcC
Confidence 54443
No 211
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.96 E-value=3.1e-10 Score=102.63 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=76.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCC---CCCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDS---VPEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~---~p~~-D~i~ 257 (357)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 457999999999999999999878889999998 777776543 35799999998762 2233 9999
Q ss_pred ecccccc---CChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHC---WDDDH--CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~---~~~~~--~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+....|. -+.+. ..+++++++++|||||++++..
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 9766554 11111 3689999999999999999864
No 212
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.95 E-value=3.4e-10 Score=97.53 Aligned_cols=97 Identities=10% Similarity=0.200 Sum_probs=77.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---CC-----CC-C
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---VP-----EG-D 254 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~p-----~~-D 254 (357)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|+.+. ++ .. |
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 3567999999999999999999887 789999998 7777766542 5799999998652 21 33 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 255 AILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+|++... ......+++++.+.|+|||.+++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 9998543 2455789999999999999999977554
No 213
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.95 E-value=3.6e-10 Score=101.69 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCC--CC-CCC-CEEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFD--SV-PEG-DAIL 257 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-p~~-D~i~ 257 (357)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +. +.. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 3567999999999999999999888889999998 778776653 3679999999865 22 233 9999
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 258 MKWILHCWDDD--HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 258 ~~~~lh~~~~~--~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+....+..+.. ...+++++++++|+|||++++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 85544322211 23578999999999999999855
No 214
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.95 E-value=5.4e-10 Score=94.49 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=74.1
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC--CCCC-C-CEEEeccccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD--SVPE-G-DAILMKWILH 263 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~p~-~-D~i~~~~~lh 263 (357)
..+|||+|||+|.++..++.... .+++++|+ +.+++.+++. ++++++.+|+.+ +.+. . |+|++...+|
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 46999999999999998887753 37899998 8888877652 479999999876 3333 3 9999987755
Q ss_pred cCChhHHHHHHHHHHH--hCCCCCEEEEEeecc
Q 018366 264 CWDDDHCLRILKNCYK--AIPDNGKVIVMNSIV 294 (357)
Q Consensus 264 ~~~~~~~~~~L~~~~~--~LkpgG~l~i~e~~~ 294 (357)
. .....+++.+.+ +|+|||++++.....
T Consensus 134 -~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 134 -R--GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp -T--TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred -C--CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 3 445677888876 499999999876543
No 215
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.94 E-value=5.4e-10 Score=99.50 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=73.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC----------------CCCCceEEEcCCCCCC--CCC-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----------------SYAGVEHVGGNMFDSV--PEG- 253 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~~D~~~~~--p~~- 253 (357)
++.+|||||||+|..+..+++. |..+++++|+ +.+++.++ ..++++++.+|..+.. +..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 4579999999999999999998 8789999998 77776654 2357999999976521 333
Q ss_pred CEEEeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 018366 254 DAILMKWILHCWDDDH--CLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~--~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|+|++....+..+.+. ..++++++++.|+|||.+++..
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865543322222 2688999999999999999863
No 216
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.94 E-value=4.1e-10 Score=97.74 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCC---C------CCC-
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDS---V------PEG- 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~------p~~- 253 (357)
.++.+|||||||+|..+..+++..| +.+++.+|+ +.+++.+++. ++++++.+|..+. . +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3567999999999999999999987 789999998 7777776542 4699999998751 2 233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|+|++.. +..+...+++++.+.|+|||++++-+...
T Consensus 149 D~I~~d~-----~~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 149 DFGFVDA-----DKPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred CEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 9998753 23556789999999999999998865433
No 217
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.93 E-value=3.3e-10 Score=102.22 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~~ 258 (357)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 457999999999999999999888889999999 777776543 25799999998762 1233 99998
Q ss_pred ccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDHC--LRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~~--~~~L~~~~~~LkpgG~l~i~e 291 (357)
...-+..+++.. .+++++++++|+|||++++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 554332222222 689999999999999999854
No 218
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.93 E-value=4.3e-10 Score=101.95 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=74.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC---CCCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS---VPEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~i~~ 258 (357)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 457999999999999999998878889999998 777776543 25799999998662 2333 99998
Q ss_pred ccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDHC--LRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~~--~~~L~~~~~~LkpgG~l~i~e 291 (357)
...-+..+.+.. .++++++++.|+|||++++..
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 543222111222 689999999999999999853
No 219
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.92 E-value=3.3e-10 Score=97.99 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=76.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC---CCC-----CC-CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD---SVP-----EG-DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~p-----~~-D~ 255 (357)
++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++. ++++++.+|+.+ .++ .. |+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 457999999999999999999987 678999998 7777777642 469999999754 111 33 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 256 ILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|++... .++...+++++.+.|+|||+|++.+...
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 987653 2556789999999999999999976654
No 220
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.92 E-value=1.1e-09 Score=97.57 Aligned_cols=103 Identities=16% Similarity=0.263 Sum_probs=74.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPE 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~ 252 (357)
...+++.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 345666666 56678999999999999999999854 7788887 7777766541 468999999987 6665
Q ss_pred CCEEEeccccccCChhHHHHHHH--------------HH--HHhCCCCCEEE
Q 018366 253 GDAILMKWILHCWDDDHCLRILK--------------NC--YKAIPDNGKVI 288 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~~~~~L~--------------~~--~~~LkpgG~l~ 288 (357)
.|+|+++... +|+.+....+|. ++ +.+++|||+++
T Consensus 94 fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 94 FDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 5999885444 454444445553 22 36899999653
No 221
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.92 E-value=1.2e-09 Score=100.64 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=71.7
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC-------CCCceEEEcCCCC-CCCCC-CEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFD-SVPEG-DAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~ 265 (357)
..+|||||||+|.++...++... .+++++|..++++.|++ .++|+++.+|+.+ ++|+. |+|++-.+-+..
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l 162 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGL 162 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTB
T ss_pred CCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccc
Confidence 46899999999999887776643 47899998656666654 2679999999988 67765 999985544443
Q ss_pred Chh-HHHHHHHHHHHhCCCCCEEEE
Q 018366 266 DDD-HCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 266 ~~~-~~~~~L~~~~~~LkpgG~l~i 289 (357)
..+ ....++....+.|||||.++-
T Consensus 163 ~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 163 LHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccchhhhHHHHHHhhCCCCceECC
Confidence 323 566888888899999998874
No 222
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.88 E-value=2e-09 Score=95.33 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=78.6
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC-CCCC-CEEEecccc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS-VPEG-DAILMKWIL 262 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-~p~~-D~i~~~~~l 262 (357)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+++. .++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45667999999999999999999988889999998 8888877642 4688999999874 2223 999887543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
...++++++.+.|+|||++++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 33578999999999999999877654
No 223
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.88 E-value=2.9e-09 Score=89.66 Aligned_cols=87 Identities=14% Similarity=0.204 Sum_probs=66.4
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-CCceEEEcCCCCCCCCC-CEEEeccccccCChhH
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFDSVPEG-DAILMKWILHCWDDDH 269 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~~~~ 269 (357)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ +|.. |+|++...+|++.+..
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~ 127 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKHS 127 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-------
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCch
Confidence 35679999999999999999987 4457999998 8888877653 379999999887 3444 9999999999987655
Q ss_pred HHHHHHHHHHhC
Q 018366 270 CLRILKNCYKAI 281 (357)
Q Consensus 270 ~~~~L~~~~~~L 281 (357)
..++++++.+.+
T Consensus 128 ~~~~l~~~~~~~ 139 (200)
T 1ne2_A 128 DRAFIDKAFETS 139 (200)
T ss_dssp CHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc
Confidence 568899999998
No 224
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.88 E-value=9.5e-10 Score=98.61 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----------CCCceEEEcCCCCC--C-CCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFDS--V-PEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~--~-p~~-D~i~~ 258 (357)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. . +.. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 457999999999999999999878889999998 777776543 25799999997652 2 233 99997
Q ss_pred ccccccCChh---HHHHHHHHHHHhCCCCCEEEEE
Q 018366 259 KWILHCWDDD---HCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 259 ~~~lh~~~~~---~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
...-+..... ...++++++++.|+|||++++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 4322211110 1268999999999999999985
No 225
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.84 E-value=3.9e-09 Score=92.75 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----------CCceEEEcCCCCCCCCC-CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFDSVPEG-DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~p~~-D~i~~~~~ 261 (357)
.+.+|||||||+|..+..+++. + .+++++|+ +.+++.+++. ++++++.+|..+.. .. |+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEECC-
Confidence 4579999999999999999988 7 89999999 8899888753 47899999987744 43 9999852
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
+++ ..+++++++.|+|||.+++..
T Consensus 148 ----~dp--~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 ----EPD--IHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ----CCC--HHHHHHHHTTEEEEEEEEEEE
T ss_pred ----CCh--HHHHHHHHHhcCCCcEEEEEc
Confidence 333 248999999999999999853
No 226
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.82 E-value=3.4e-08 Score=83.42 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=69.8
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----C-CceEEEcCCCCCCCCC-CEEEeccccccC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFDSVPEG-DAILMKWILHCW 265 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~p~~-D~i~~~~~lh~~ 265 (357)
.+..+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++. . +++++.+|+.+ ++.. |+|++.-.+|.+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence 3567999999999999999998743 37899998 7787776542 2 68999999877 3334 999999998887
Q ss_pred ChhHHHHHHHHHHHhC
Q 018366 266 DDDHCLRILKNCYKAI 281 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~L 281 (357)
.......+++++.+.+
T Consensus 126 ~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS 141 (207)
T ss_dssp STTTTHHHHHHHHHHC
T ss_pred cCCchHHHHHHHHHhc
Confidence 6555578899999998
No 227
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.82 E-value=9e-09 Score=91.38 Aligned_cols=116 Identities=11% Similarity=0.072 Sum_probs=81.7
Q ss_pred CCCCceEEEEcC------CcchHHHHHHhhCC-CCeEEEeechHHHHhCCCCCCceE-EEcCCCC-CCCCC-CEEEeccc
Q 018366 192 FQNVERLVDVGG------GFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPSYAGVEH-VGGNMFD-SVPEG-DAILMKWI 261 (357)
Q Consensus 192 ~~~~~~vLDiG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~-~~~D~~~-~~p~~-D~i~~~~~ 261 (357)
+.+..+|||+|| |+|. ..+++..| +.+++++|+.+. .+++++ +.+|+.+ +.+.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcCC
Confidence 566789999999 4476 44566666 689999998433 146899 9999987 44444 99998643
Q ss_pred ccc--------C-ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 262 LHC--------W-DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 262 lh~--------~-~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
.+. . ..+....+|+.+++.|||||++++...... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 221 0 013346899999999999999998543110 12367788
Q ss_pred HHHcCCceeEEe
Q 018366 333 AIAAGFKHINFA 344 (357)
Q Consensus 333 l~~aGf~~~~~~ 344 (357)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888899877765
No 228
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.81 E-value=1.5e-08 Score=93.88 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=90.1
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCC-C-CEEEecc
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPE-G-DAILMKW 260 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~-~-D~i~~~~ 260 (357)
+.+..+|||+|||+|.++..++...+..+++++|+ +.+++.+++. ++++++.+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45678999999999999999999988668899998 8888887652 478999999988 5543 3 9999965
Q ss_pred ccccCC-----hhH-HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018366 261 ILHCWD-----DDH-CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAI 334 (357)
Q Consensus 261 ~lh~~~-----~~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 334 (357)
.++... -++ ..++++.+++.| ||+++++.. +.+.+++.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 543211 112 267888999988 555555431 2455667888
Q ss_pred HcCCceeEEeecC
Q 018366 335 AAGFKHINFASCV 347 (357)
Q Consensus 335 ~aGf~~~~~~~~~ 347 (357)
+.||+..+.....
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 9999988876654
No 229
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.81 E-value=8.2e-09 Score=98.03 Aligned_cols=108 Identities=12% Similarity=0.111 Sum_probs=81.5
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-C--CC-CC
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-S--VP-EG 253 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~p-~~ 253 (357)
...++ ..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|+.+ + ++ ..
T Consensus 252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence 34344 566789999999999999999999877 78999998 666665543 2468999999887 2 44 33
Q ss_pred -CEEEe------ccccccCChh-------HH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 254 -DAILM------KWILHCWDDD-------HC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 254 -D~i~~------~~~lh~~~~~-------~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
|+|++ ..+++..++. +. .++|+++.+.|||||++++.+...
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99985 4455554332 11 578999999999999999987654
No 230
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.80 E-value=1.5e-08 Score=95.40 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=78.1
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCC-C-CEEEe
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPE-G-DAILM 258 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~-~-D~i~~ 258 (357)
..+++.+. ..+..+|||+|||+|.++..+++.+ +..+++++|+ +.+++.+ .+++++.+|+++..+. . |+|++
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 34555454 3345699999999999999999886 6778999998 7777766 5799999999884433 3 99999
Q ss_pred cccccc----------CChhHH-----------------HHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KWILHC----------WDDDHC-----------------LRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~----------~~~~~~-----------------~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+--... .+++.. ..+++++.+.|+|||+++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 522211 222221 2679999999999999998765
No 231
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.79 E-value=5.5e-09 Score=95.78 Aligned_cols=100 Identities=10% Similarity=0.158 Sum_probs=79.3
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCC-----CeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCCCC-CC-CEEEec
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDSVP-EG-DAILMK 259 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p-~~-D~i~~~ 259 (357)
.+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++.. .++.++.+|.+.+.+ .. |+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35679999999999999999988764 67899998 7777776542 258899999988544 33 999998
Q ss_pred cccccCChhHH----------------HHHHHHHHHhCCCCCEEEEEee
Q 018366 260 WILHCWDDDHC----------------LRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~~lh~~~~~~~----------------~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88776654432 2689999999999999998764
No 232
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.79 E-value=9e-09 Score=89.58 Aligned_cols=104 Identities=8% Similarity=0.188 Sum_probs=73.1
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCC-CC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPE-GD 254 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~-~D 254 (357)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 346676665 5667899999999999999999986 57888888 777776654 3689999999988 6664 35
Q ss_pred EEEeccccccCChhHHHHHH--------------HHHHHhCCCCCEEE
Q 018366 255 AILMKWILHCWDDDHCLRIL--------------KNCYKAIPDNGKVI 288 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L--------------~~~~~~LkpgG~l~ 288 (357)
.+++.+.-++++.+-...++ ..+.+.++|+|++.
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 45555555555433333443 33667788777543
No 233
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.78 E-value=1.5e-08 Score=92.26 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------C-CceEEEcCCCCCC------CCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFDSV------PEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~D~~~~~------p~~-D~i~ 257 (357)
+..+|||+|||+|.++..+++... +++++|+ +.+++.+++. + +++++.+|+++.. +.. |+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 456999999999999999998643 8999998 7888877652 2 4899999987722 223 9999
Q ss_pred eccc----------cccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWI----------LHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~----------lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.-. ++.. ++...+++++.+.|+|||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 8322 2222 4567999999999999999877554
No 234
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.78 E-value=3.7e-09 Score=93.72 Aligned_cols=103 Identities=10% Similarity=0.062 Sum_probs=75.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CC-----CCC-CEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SV-----PEG-DAI 256 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-----p~~-D~i 256 (357)
..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++. .+++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456679999999999999999998876 78999998 7777765542 478999999876 22 333 999
Q ss_pred Eec------ccccc---CCh-------hHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 257 LMK------WILHC---WDD-------DHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 257 ~~~------~~lh~---~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
++. .+++. |+. +...++|+++.+.|||||++++.+...
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 876 22221 111 223689999999999999999977544
No 235
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.77 E-value=9.3e-08 Score=87.74 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=93.8
Q ss_pred CceEEEEcCCcchHHHHH--------HhhC-------CCCeEEEeechH-H-------HHhCCC----------C-CC--
Q 018366 195 VERLVDVGGGFGVTLSMI--------TSKY-------PQIKAVNFDLPH-V-------VQDAPS----------Y-AG-- 238 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~----------~-~~-- 238 (357)
..+|+|+|||+|..+..+ .+.+ |...++.-|+|. . +...++ . .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999887776 2233 778888888753 1 111111 0 01
Q ss_pred -ceEEEcCCCC-CCCCC--CEEEeccccccCCh------------------------------------hHHHHHHHHHH
Q 018366 239 -VEHVGGNMFD-SVPEG--DAILMKWILHCWDD------------------------------------DHCLRILKNCY 278 (357)
Q Consensus 239 -v~~~~~D~~~-~~p~~--D~i~~~~~lh~~~~------------------------------------~~~~~~L~~~~ 278 (357)
+.-+++.|.. .+|.+ |+|+++.+||+.++ .+...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567766 67765 99999999999861 14456799999
Q ss_pred HhCCCCCEEEEEeeccCCCCCCCchh--h-h-hhhhhhhh-hhh-----------c-CCCccCCHHHHHHHHH-HcCCce
Q 018366 279 KAIPDNGKVIVMNSIVPEIPEVSSSA--R-E-TSLLDVLL-MTR-----------D-GGGRERTKKEFTELAI-AAGFKH 340 (357)
Q Consensus 279 ~~LkpgG~l~i~e~~~~~~~~~~~~~--~-~-~~~~~~~~-~~~-----------~-~~~~~~t~~e~~~ll~-~aGf~~ 340 (357)
+.|+|||++++.-...++........ . + ......+. +.. + .--..+|.+|++.+++ +.||++
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I 292 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI 292 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence 99999999999877654421111000 0 0 00001110 000 0 0123479999999998 599998
Q ss_pred eEEee
Q 018366 341 INFAS 345 (357)
Q Consensus 341 ~~~~~ 345 (357)
..+..
T Consensus 293 ~~le~ 297 (374)
T 3b5i_A 293 DKLVV 297 (374)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77643
No 236
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.75 E-value=1.9e-09 Score=105.44 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=79.0
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----C--CCceEEEcCCCC---CCCC-C-CEEEeccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFD---SVPE-G-DAILMKWI 261 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~---~~p~-~-D~i~~~~~ 261 (357)
.+.+|||||||.|.++..+++. +..++++|. +.+++.|+. . .+|+|..+|+.+ ..+. . |+|+|..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4679999999999999999997 568999998 778887764 2 258999998876 2333 3 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCC
Q 018366 262 LHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPE 296 (357)
Q Consensus 262 lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 296 (357)
|||+++++...-+.++.+.|+++|+.++...+..+
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 99998776555566777888888877776654433
No 237
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.75 E-value=2.5e-09 Score=93.20 Aligned_cols=106 Identities=8% Similarity=0.179 Sum_probs=77.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCC-CCE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPE-GDA 255 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~-~D~ 255 (357)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++. +.+
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 45666666 5667899999999999999999985 68999998 7788877763 468999999988 5553 333
Q ss_pred EEeccccccCChhHHHHHH--------------HHHHHhCCCCCEEEEEe
Q 018366 256 ILMKWILHCWDDDHCLRIL--------------KNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 256 i~~~~~lh~~~~~~~~~~L--------------~~~~~~LkpgG~l~i~e 291 (357)
+++.+.-++.+.+....++ +.+.+.|+|||++.++.
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 4444443444433333333 56889999999887654
No 238
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.72 E-value=1.9e-08 Score=88.79 Aligned_cols=119 Identities=15% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-------CCCceEEEcCCCCCCCCC--CEEEecccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFDSVPEG--DAILMKWIL 262 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~p~~--D~i~~~~~l 262 (357)
+++.+|||+|||+|.++..+++.. ..+++.+|+ |..++.+++ .++|+++.+|..+-.+.. |.|++...-
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~ 202 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence 467899999999999999998874 468999998 777777664 257999999998743433 988875432
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018366 263 HCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHI 341 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 341 (357)
...++|..+.+.|||||.|.+.+....+. ......+.++++.++.|+++.
T Consensus 203 ------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcEE
Confidence 22467888889999999998877653221 011235667788889998764
No 239
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.68 E-value=2.8e-08 Score=89.12 Aligned_cols=100 Identities=12% Similarity=0.269 Sum_probs=70.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------CCCceEEEcCCCC-CCCCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFD-SVPEG 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p~~ 253 (357)
...+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 345666665 566789999999999999999987 357888888 777776654 2579999999987 55444
Q ss_pred CEEEeccccccCChhHHHHHH---------------HHHHHhCCCCC
Q 018366 254 DAILMKWILHCWDDDHCLRIL---------------KNCYKAIPDNG 285 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L---------------~~~~~~LkpgG 285 (357)
|+|++... ++++.+....+| ..+.+.++|+|
T Consensus 108 D~Vv~n~p-y~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTANIP-YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEcCC-cccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 99988544 456656656666 34668888877
No 240
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.66 E-value=3.3e-08 Score=93.29 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=80.2
Q ss_pred HhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC---CCC-C-C
Q 018366 186 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS---VPE-G-D 254 (357)
Q Consensus 186 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~p~-~-D 254 (357)
...++ ..+..+|||+|||+|..+..+++..++.+++++|+ +..++.+++. .++.++.+|+.+. ++. . |
T Consensus 239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCC
Confidence 33444 55678999999999999999999998889999998 6666655432 2578999998872 333 3 9
Q ss_pred EEEe------ccccccCCh-------hHH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 255 AILM------KWILHCWDD-------DHC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 255 ~i~~------~~~lh~~~~-------~~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+|++ ..++++.++ ++. .++|+++.+.|||||++++.+...
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9985 234554433 122 488999999999999999987544
No 241
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.64 E-value=1.4e-08 Score=95.92 Aligned_cols=102 Identities=9% Similarity=0.085 Sum_probs=76.2
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C--CCCC-CEEEe-
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S--VPEG-DAILM- 258 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~p~~-D~i~~- 258 (357)
..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++. . +.++.+|+.+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999998865 68999998 7777776542 3 8889998766 2 2333 99985
Q ss_pred ------------ccccccCChhHH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 259 ------------KWILHCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 259 ------------~~~lh~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
......|+.++. .++|+.+.+.|||||+|+..+-..
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 122223333333 689999999999999999865443
No 242
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.64 E-value=5.3e-08 Score=92.75 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=76.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC-CCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C--CCCC-CEEEec--
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S--VPEG-DAILMK-- 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~p~~-D~i~~~-- 259 (357)
+..+|||+|||+|..+..+++..+ ...++++|+ +.+++.+++. .++.++.+|..+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 668999999999999999999875 468999998 7777766542 468999999877 2 3344 999871
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 ----WIL-------HCWDDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ----~~l-------h~~~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.++ ++|+.++ ..++|+++.++|||||+|++.+...
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 222 2344332 2478999999999999999876544
No 243
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.60 E-value=6.7e-07 Score=81.45 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=91.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhh----------------CCCCeEEEeechH-HHHhC-CCCC------C---ceEEEcC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSK----------------YPQIKAVNFDLPH-VVQDA-PSYA------G---VEHVGGN 245 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~~~a-~~~~------~---v~~~~~D 245 (357)
++..+|+|+||++|..+..+... .|...++.-|+|. ..+.. +..+ + +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999765543332 4667788889842 22211 1111 2 2335567
Q ss_pred CCC-CCCCC--CEEEeccccccCCh-------------------------------hHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 246 MFD-SVPEG--DAILMKWILHCWDD-------------------------------DHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 246 ~~~-~~p~~--D~i~~~~~lh~~~~-------------------------------~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
|.. .+|.+ |+|+++.+||+.++ .+...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 766 67875 99999999998753 133456999999999999999987
Q ss_pred eccCCCCCCC-----chhhh-hhhhhhhhhhh---------cCCCccCCHHHHHHHHHHcCC-ceeEE
Q 018366 292 SIVPEIPEVS-----SSARE-TSLLDVLLMTR---------DGGGRERTKKEFTELAIAAGF-KHINF 343 (357)
Q Consensus 292 ~~~~~~~~~~-----~~~~~-~~~~~~~~~~~---------~~~~~~~t~~e~~~ll~~aGf-~~~~~ 343 (357)
...++..... ....+ ..+.++..... ..-...++.+|++.+++++|. ++...
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 7665431100 00001 11111111100 001235789999999999964 66554
No 244
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.60 E-value=6.9e-07 Score=82.04 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=91.4
Q ss_pred CceEEEEcCCcchHHHHHHhh-----------------CCCCeEEEeech-----------H-HHHhC----CCCCCceE
Q 018366 195 VERLVDVGGGFGVTLSMITSK-----------------YPQIKAVNFDLP-----------H-VVQDA----PSYAGVEH 241 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a----~~~~~v~~ 241 (357)
..+|+|+||++|..+..+... .|.+.++.-|+| + ..+.. ....+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999988877665 466778888876 1 11111 11112344
Q ss_pred E---EcCCCC-CCCCC--CEEEeccccccCChhH-------------------------H------------HHHHHHHH
Q 018366 242 V---GGNMFD-SVPEG--DAILMKWILHCWDDDH-------------------------C------------LRILKNCY 278 (357)
Q Consensus 242 ~---~~D~~~-~~p~~--D~i~~~~~lh~~~~~~-------------------------~------------~~~L~~~~ 278 (357)
+ ++.|.. .+|.+ |+|+++.+||+.++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 455655 67775 9999999999875321 1 12377779
Q ss_pred HhCCCCCEEEEEeeccCCCC-CCCch-hhhhhhhhhhhhhh--------c-CCCccCCHHHHHHHHHHcC-CceeEEe
Q 018366 279 KAIPDNGKVIVMNSIVPEIP-EVSSS-ARETSLLDVLLMTR--------D-GGGRERTKKEFTELAIAAG-FKHINFA 344 (357)
Q Consensus 279 ~~LkpgG~l~i~e~~~~~~~-~~~~~-~~~~~~~~~~~~~~--------~-~~~~~~t~~e~~~ll~~aG-f~~~~~~ 344 (357)
+.|+|||++++.-...++.. .+... .....+.++..... + .--..++.+|++.+++++| |++..+.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 99999999999877654420 11100 00111111111100 1 0123479999999999985 7877653
No 245
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.52 E-value=1.6e-07 Score=87.25 Aligned_cols=111 Identities=9% Similarity=0.027 Sum_probs=80.3
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 222 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 222 (357)
.+..++.... +.+...|||.+||+|.++.+.+....+ .+++
T Consensus 189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 3445666555 777889999999999999888876544 5689
Q ss_pred Eeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-CEEEecccccc-C-ChhHHHHHHHHHHHhCCC--CCEEE
Q 018366 223 NFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-DAILMKWILHC-W-DDDHCLRILKNCYKAIPD--NGKVI 288 (357)
Q Consensus 223 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~-~-~~~~~~~~L~~~~~~Lkp--gG~l~ 288 (357)
++|+ +.+++.++.. .+++++.+|+.+ +.+.. |+|+++--... . ..++...+.+.+.+.||+ ||++.
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9998 8888877652 469999999988 44444 99999743321 1 124556677777777765 99988
Q ss_pred EEee
Q 018366 289 VMNS 292 (357)
Q Consensus 289 i~e~ 292 (357)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8765
No 246
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.52 E-value=5.5e-08 Score=91.78 Aligned_cols=103 Identities=13% Similarity=0.179 Sum_probs=74.8
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-C--CCCC-CEEEec
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-S--VPEG-DAILMK 259 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~p~~-D~i~~~ 259 (357)
..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.+++. .++.++.+|..+ . .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999988664 68999998 7777766542 468888898766 2 3334 999863
Q ss_pred c------cccc-------CChhH-------HHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 260 W------ILHC-------WDDDH-------CLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 260 ~------~lh~-------~~~~~-------~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
- ++.. |+.++ ..++|+++.+.|||||+|+..+-..
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 2222 11111 1388999999999999999866543
No 247
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.50 E-value=4.2e-07 Score=84.07 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=84.1
Q ss_pred chhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC--------------------------------------C
Q 018366 178 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------I 219 (357)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~ 219 (357)
....+..++.... +.+...|+|.+||+|.++.+.+....+ .
T Consensus 179 ~e~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 179 KENMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp CHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred cHHHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 3334455666555 778889999999999999988876544 4
Q ss_pred eEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-CEEEecccccc-C-ChhHHHHHHHHHHHhCCC--CC
Q 018366 220 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-DAILMKWILHC-W-DDDHCLRILKNCYKAIPD--NG 285 (357)
Q Consensus 220 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~-~-~~~~~~~~L~~~~~~Lkp--gG 285 (357)
+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|+++--.+. . ..++...+.+.+.+.||+ ||
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCc
Confidence 6899998 8888877652 469999999988 44444 99998744321 2 235677888888888876 99
Q ss_pred EEEEEee
Q 018366 286 KVIVMNS 292 (357)
Q Consensus 286 ~l~i~e~ 292 (357)
++.++..
T Consensus 338 ~~~iit~ 344 (384)
T 3ldg_A 338 SQFILTN 344 (384)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 9988765
No 248
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.49 E-value=6.9e-07 Score=81.03 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=104.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------------------------CCCceEEEcCC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGNM 246 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~D~ 246 (357)
+...|+.+|||.......+...+++++++.+|.|++++..++ .++..++..|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 567999999999999999999888999999999988765432 15688999999
Q ss_pred CC-CC--------C--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhh
Q 018366 247 FD-SV--------P--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLL 314 (357)
Q Consensus 247 ~~-~~--------p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 314 (357)
.+ +. + .. .++++-.+|++++.+...++|+.+.+.. |+|.+++.|.+.+.++.... ... ....+..
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~f-g~~-m~~~l~~ 253 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRF-GAI-MQSNLKE 253 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCH-HHH-HHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchH-HHH-HHHHhhc
Confidence 87 22 1 22 7899999999999999999999999987 78888888988763322211 110 0011111
Q ss_pred -hhh--cCCCccCCHHHHHHHHHHcCCc
Q 018366 315 -MTR--DGGGRERTKKEFTELAIAAGFK 339 (357)
Q Consensus 315 -~~~--~~~~~~~t~~e~~~ll~~aGf~ 339 (357)
... .......|.++..+.|.++||+
T Consensus 254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 SRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 100 0012456899999999999997
No 249
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.47 E-value=9.3e-08 Score=90.66 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=79.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-------------CCCeEEEeec-hHHHHhCCCC------C--Cce
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------A--GVE 240 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--~v~ 240 (357)
..+++.+. .....+|+|.|||+|.++..+.+.. +..+++++|+ +.+++.|+.. . ++.
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 34455444 4456799999999999999888753 3467888988 7777766531 2 678
Q ss_pred EEEcCCCC-CCCCC-CEEEeccccccCChh---------------HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 241 HVGGNMFD-SVPEG-DAILMKWILHCWDDD---------------HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 241 ~~~~D~~~-~~p~~-D~i~~~~~lh~~~~~---------------~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+..+|.+. +.... |+|+++-.++..... ....+++++.+.|||||+++++.+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 99999988 33334 999998666543211 124789999999999999998775
No 250
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.45 E-value=8e-07 Score=83.86 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=69.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCC----
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVP---- 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p---- 251 (357)
..+++.++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. .+++|+.+|+.+.++
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34555554 456679999999999999999987 568999998 7888877642 479999999987332
Q ss_pred -C-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 018366 252 -E-G-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 252 -~-~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
. . |+|++.---.. ..++++.+.+ ++|++.+++
T Consensus 353 ~~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp GTTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEE
T ss_pred hcCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEE
Confidence 2 2 99997433222 2245555554 688777766
No 251
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.44 E-value=2.7e-07 Score=85.60 Aligned_cols=111 Identities=15% Similarity=0.082 Sum_probs=81.8
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 222 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 222 (357)
.+..++.... +.+..+|||.+||+|.++.+++....+ .+++
T Consensus 183 lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 183 LAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 4445566555 777889999999999999998876433 5689
Q ss_pred Eeec-hHHHHhCCCC-------CCceEEEcCCCC-CCCCC-CEEEecccccc-CC-hhHHHHHHHHHHHhCCC--CCEEE
Q 018366 223 NFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVPEG-DAILMKWILHC-WD-DDHCLRILKNCYKAIPD--NGKVI 288 (357)
Q Consensus 223 ~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~-~~-~~~~~~~L~~~~~~Lkp--gG~l~ 288 (357)
++|+ +.+++.++.. .++++..+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.||+ |+.+.
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9998 8888888752 368999999988 44444 99999655432 22 24566788888888876 88888
Q ss_pred EEee
Q 018366 289 VMNS 292 (357)
Q Consensus 289 i~e~ 292 (357)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8764
No 252
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.43 E-value=1.2e-07 Score=88.10 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCC------CCC-CEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSV------PEG-DAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~------p~~-D~i~~~ 259 (357)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999988 457899998 7888777652 34899999987622 233 999984
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 260 WILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 260 ~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-..+..+. +....+++++.+.|+|||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32211111 4456899999999999999998764
No 253
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.42 E-value=6.4e-07 Score=77.94 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=63.6
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CCCCC--CEE
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SVPEG--DAI 256 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~p~~--D~i 256 (357)
..+++.++ ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ ++++. +.+
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 98 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELK 98 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEE
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcE
Confidence 45677666 566789999999999999999987 4568888888 7888877654 568999999988 56542 556
Q ss_pred EeccccccCChh
Q 018366 257 LMKWILHCWDDD 268 (357)
Q Consensus 257 ~~~~~lh~~~~~ 268 (357)
++.+.=++.+.+
T Consensus 99 vv~NlPy~i~~~ 110 (249)
T 3ftd_A 99 VVGNLPYNVASL 110 (249)
T ss_dssp EEEECCTTTHHH
T ss_pred EEEECchhccHH
Confidence 666666555433
No 254
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.42 E-value=5.5e-07 Score=80.17 Aligned_cols=79 Identities=11% Similarity=0.248 Sum_probs=61.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCCCC--
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVPEG-- 253 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p~~-- 253 (357)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++..
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 346677666 6667899999999999999999983 57777887 777777664 3689999999998 66653
Q ss_pred CEEEeccccc
Q 018366 254 DAILMKWILH 263 (357)
Q Consensus 254 D~i~~~~~lh 263 (357)
|+|+++...+
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9998765443
No 255
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.41 E-value=6.8e-08 Score=89.76 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=71.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C--CceEEEcCCCCCC------CCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFDSV------PEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------p~~-D~i~ 257 (357)
+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. . +++++.+|+++.. +.. |+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 45799999999999999999863 237899998 7788777642 2 7999999987622 123 9999
Q ss_pred ecccc-----ccCC--hhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWIL-----HCWD--DDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~l-----h~~~--~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.-.. .+.. .+...++++.+.+.|+|||.|++...
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 84222 1111 13445788899999999999988654
No 256
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.40 E-value=1e-07 Score=89.06 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=73.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------C-CceEEEcCCCCCC------CCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFDSV------PEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~------p~~-D~i~~ 258 (357)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. . +++++.+|+++.. +.. |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5679999999999999999987 3447899998 7788776642 2 7899999987621 223 99998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 259 KWILHCWDD-------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 259 ~~~lh~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.-..+..+. .....+++++.+.|+|||+++++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 432222111 4566899999999999999988764
No 257
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.40 E-value=3.3e-07 Score=85.10 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=71.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCCC---CCCC-CEEEeccccc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFDS---VPEG-DAILMKWILH 263 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~p~~-D~i~~~~~lh 263 (357)
+..+|||+|||+|.++..+++... .++++|+ +.+++.+++. -..++..+|+++. .+.. |+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 467999999999999999998743 4899998 8888877652 1235778898762 2333 9999854321
Q ss_pred cCCh-------hHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 264 CWDD-------DHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 264 ~~~~-------~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.-+. ....++++.+.+.|+|||+|+++...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1111 23458899999999999999976653
No 258
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.39 E-value=1.3e-06 Score=75.58 Aligned_cols=108 Identities=13% Similarity=0.058 Sum_probs=67.3
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeech-HHHHhCCCC----CCceEEEcCCCC-CCCC-C
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSY----AGVEHVGGNMFD-SVPE-G 253 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~~v~~~~~D~~~-~~p~-~ 253 (357)
.+.++.+... +++..+|||+|||+|.++..+++..+-..+.++|+. ......... .++.....++.. .++. .
T Consensus 62 KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 140 (277)
T 3evf_A 62 KLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVK 140 (277)
T ss_dssp HHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCC
Confidence 3456666633 667789999999999999988877554455556652 111011110 134444555422 3443 2
Q ss_pred -CEEEeccccc---cCChh-HHHHHHHHHHHhCCCC-CEEEE
Q 018366 254 -DAILMKWILH---CWDDD-HCLRILKNCYKAIPDN-GKVIV 289 (357)
Q Consensus 254 -D~i~~~~~lh---~~~~~-~~~~~L~~~~~~Lkpg-G~l~i 289 (357)
|+|++....+ ++.|+ ....+|+.+.+.|+|| |.+++
T Consensus 141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999977555 12222 2235688899999999 99988
No 259
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.38 E-value=2.4e-07 Score=84.48 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------CCceEEEcCCCCCCCCCCEEEecccccc
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFDSVPEGDAILMKWILHC 264 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~D~i~~~~~lh~ 264 (357)
.+..+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++. ++++++.+|+++.....|+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 3567999999999999999 76 4678999998 7788777642 4799999999874422399998432
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeec
Q 018366 265 WDDDHCLRILKNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 265 ~~~~~~~~~L~~~~~~LkpgG~l~i~e~~ 293 (357)
.....+++.+.+.|+|||.+++.+..
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ---HhHHHHHHHHHHHcCCCCEEEEEEee
Confidence 11237899999999999999997764
No 260
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.37 E-value=2.3e-07 Score=90.46 Aligned_cols=126 Identities=20% Similarity=0.238 Sum_probs=86.1
Q ss_pred hhhhcccCcchHHHHHHHHhhcchhhHHHHHhhccc---CCCCceEEEEcCCcchHHHHHHh---hC-CCCeEEEeechH
Q 018366 156 IFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEG---FQNVERLVDVGGGFGVTLSMITS---KY-PQIKAVNFDLPH 228 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~---~~~~~~vLDiG~G~G~~~~~l~~---~~-p~~~~~~~D~~~ 228 (357)
.|+-|++|+-....|.+++.. .+.+..+. ..+...|+|||||+|-+....++ +. -.+++..++-.+
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 477788888777777775532 22222221 22346899999999988443333 32 234678888755
Q ss_pred HHHhCCC-------CCCceEEEcCCCC-CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 018366 229 VVQDAPS-------YAGVEHVGGNMFD-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVI 288 (357)
Q Consensus 229 ~~~~a~~-------~~~v~~~~~D~~~-~~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~ 288 (357)
+...+++ .++|+++.+|+.+ ..|+- |+|++-.+=+....|-...+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 5555543 2679999999999 78875 99998776665555767788888889999999764
No 261
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.34 E-value=1.9e-07 Score=87.10 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=73.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-------C-CceEEEcCCCCCC------CCC-CEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFDSV------PEG-DAIL 257 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~D~~~~~------p~~-D~i~ 257 (357)
+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. . +++++.+|+++.. +.. |+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 45799999999999999999874 347899998 7777776542 2 6899999987722 223 9999
Q ss_pred ecccc---------ccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWIL---------HCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~l---------h~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.-.. +.. ....+++.++.+.|+|||.+++...
T Consensus 299 ~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 85321 111 4567899999999999999998664
No 262
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.33 E-value=5.9e-07 Score=79.33 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=74.5
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC-----------CCCceEEEcCCCCCCC---CC-CEE
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFDSVP---EG-DAI 256 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p---~~-D~i 256 (357)
+++.+||-||+|.|..++++++..+..+++.+|+ |.+++.+++ .+|++++.+|...-+. .. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 3678999999999999999999877778888888 888876653 3789999999988332 22 999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 257 LMKWILHCWDDD---HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 257 ~~~~~lh~~~~~---~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
+.-.. ...... -..++++.+++.|+|||.++....
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 86322 111111 124789999999999999998543
No 263
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.32 E-value=1.2e-06 Score=77.11 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=63.4
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---CCCceEEEcCCCC-CCCC--C-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---YAGVEHVGGNMFD-SVPE--G-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~D~~~-~~p~--~-D 254 (357)
+.+++.+. ..+. +|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ ++++ . |
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 45666666 5666 99999999999999999986 46777776 777776654 2579999999988 5553 2 5
Q ss_pred EEEeccccccCChhHHHHHHHH
Q 018366 255 AILMKWILHCWDDDHCLRILKN 276 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L~~ 276 (357)
.|+ .|.=++.+.+-..++|..
T Consensus 113 ~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 113 LLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEE-EEECSSCCHHHHHHHHHH
T ss_pred EEE-ecCcccccHHHHHHHhcC
Confidence 554 455555665555555543
No 264
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.31 E-value=2.6e-07 Score=83.89 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=69.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------------CCceEEEcCCCCCC------CC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFDSV------PE 252 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~~~------p~ 252 (357)
++.+|||||||+|..+.++++..+ .+++.+|+ +.+++.+++. ++++++.+|.++.+ +.
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 568999999999999999998865 68888888 8888776541 27999999988722 22
Q ss_pred C-CEEEecccc-ccC-Chh--HHHHHHHHH----HHhCCCCCEEEEEe
Q 018366 253 G-DAILMKWIL-HCW-DDD--HCLRILKNC----YKAIPDNGKVIVMN 291 (357)
Q Consensus 253 ~-D~i~~~~~l-h~~-~~~--~~~~~L~~~----~~~LkpgG~l~i~e 291 (357)
. |+|++--.- ..- ... ...++++.+ +++|+|||.+++..
T Consensus 267 ~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs 314 (364)
T 2qfm_A 267 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 314 (364)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEc
Confidence 3 999874321 100 010 123555655 99999999998854
No 265
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.28 E-value=4.1e-07 Score=90.78 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=73.1
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCC---CCCC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDS---VPEG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~p~~-D~i~~~~ 260 (357)
+..+|||+|||+|.++..++.... .+++.+|+ +.+++.+++. .+++++.+|+++. .... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 457999999999999999988543 36899998 7788777642 3799999998872 2233 9999843
Q ss_pred c-----------cccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 261 I-----------LHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 261 ~-----------lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. ++.. ....++++++.+.|+|||+|++...
T Consensus 618 P~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2 2222 4567899999999999999997554
No 266
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.26 E-value=8.8e-07 Score=77.17 Aligned_cols=90 Identities=8% Similarity=0.068 Sum_probs=61.0
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC----CCceEEEcCCCC-CCCC---
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFD-SVPE--- 252 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~p~--- 252 (357)
...+++.+. ..+..+|||||||+|.++. +. ..+..+++++|+ +.+++.+++. ++++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 456666665 5667899999999999999 64 454434888888 8888877653 479999999987 4432
Q ss_pred ---CCEEEeccccccCChhHHHHHH
Q 018366 253 ---GDAILMKWILHCWDDDHCLRIL 274 (357)
Q Consensus 253 ---~D~i~~~~~lh~~~~~~~~~~L 274 (357)
.+.+++++.=++.+.+-..+++
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2345555554555444333444
No 267
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.24 E-value=5.1e-07 Score=79.85 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=53.7
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCC--CeEEEeec-hHHHHhCCCC--CCceEEEcCCCC-CCC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFD-SVP 251 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~p 251 (357)
..+++.+. ..+..+|||||||+|.++..+++..+. .+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 45666665 566789999999999999999998764 44777777 8888877653 679999999987 544
No 268
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.22 E-value=1.5e-06 Score=84.75 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=81.5
Q ss_pred hhhhcccCcchHHHHHHHHhhcchhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhh----C---------CCCeEE
Q 018366 156 IFEYASGNPGFNETYHKAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK----Y---------PQIKAV 222 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~----~---------p~~~~~ 222 (357)
.|+-+.+|+-....|.+++... +.+..++-.+...|||||||+|-++...+++ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 4666677776666676654331 1121211123468999999999986432222 1 234788
Q ss_pred Eeec-hHHHHhCCC------CCCceEEEcCCCC-CC------CC-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEE
Q 018366 223 NFDL-PHVVQDAPS------YAGVEHVGGNMFD-SV------PE-GDAILMKWILHCWDDDHCLRILKNCYKAIPDNGKV 287 (357)
Q Consensus 223 ~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~------p~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l 287 (357)
+++. +..+...+. .++|+++.+|+.+ .. |+ .|+|++-..=.....|-..++|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 8886 333322211 2679999999998 55 44 39999888765555566678898889999999975
Q ss_pred E
Q 018366 288 I 288 (357)
Q Consensus 288 ~ 288 (357)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 5
No 269
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.19 E-value=1.7e-06 Score=75.39 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=53.3
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC-CCC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD-SVP 251 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p 251 (357)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345667666 6667899999999999999999985 57788887 778877654 3689999999988 554
No 270
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.17 E-value=5.7e-06 Score=77.60 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCCCCCC-CEEEeccccccC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDSVPEG-DAILMKWILHCW 265 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~ 265 (357)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. . ++++.+|+.+..+.. |+|++.-.-...
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAGL 366 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTCS
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccch
Confidence 5679999999999999999986 347889998 8888877652 3 899999998844434 999985432222
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 266 DDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 266 ~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
. ..+++.+. .|+|||.+++..
T Consensus 367 ~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 367 H----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp C----HHHHHHHH-HHCCSEEEEEES
T ss_pred H----HHHHHHHH-hcCCCcEEEEEC
Confidence 1 23555554 489999888843
No 271
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.10 E-value=3.3e-06 Score=73.66 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=76.5
Q ss_pred CCceEEEEcCCcchHHHHHHhh-------CCC-----CeEEEeec-h---HHHHh-----------CC------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSK-------YPQ-----IKAVNFDL-P---HVVQD-----------AP------------ 234 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~-----------a~------------ 234 (357)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+.. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988886654 674 57788885 4 22221 11
Q ss_pred ------C--CCCceEEEcCCCC---CCCC----C-CEEEecc-ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC
Q 018366 235 ------S--YAGVEHVGGNMFD---SVPE----G-DAILMKW-ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI 297 (357)
Q Consensus 235 ------~--~~~v~~~~~D~~~---~~p~----~-D~i~~~~-~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~ 297 (357)
. ..++++..+|+.+ ..+. . |+|++-. .-..-++-...++|+.+++.|+|||+|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa----- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC-----
Confidence 1 1246788899766 2332 3 9988732 11101110135789999999999999885221
Q ss_pred CCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEeecC
Q 018366 298 PEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFASCV 347 (357)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 347 (357)
...+++.|.++||++.++...+
T Consensus 215 ----------------------------a~~vrr~L~~aGF~v~~~~g~~ 236 (257)
T 2qy6_A 215 ----------------------------AGFVRRGLQEAGFTMQKRKGFG 236 (257)
T ss_dssp ----------------------------BHHHHHHHHHHTEEEEEECCST
T ss_pred ----------------------------CHHHHHHHHHCCCEEEeCCCCC
Confidence 1235678888999977654433
No 272
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.09 E-value=4.8e-06 Score=72.23 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=70.0
Q ss_pred chhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCce-EEEc-CCCCCC
Q 018366 178 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVE-HVGG-NMFDSV 250 (357)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~-~~~~-D~~~~~ 250 (357)
+.+.+.++.+.+. +.+..+|||+|||.|.++...++..+-..++++|+ ..+...+.. ..++. +... |+..-.
T Consensus 75 AAfKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~ 153 (282)
T 3gcz_A 75 GSAKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNME 153 (282)
T ss_dssp HHHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSC
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcC
Confidence 3344567777764 77788999999999999999887766556777776 222111111 11222 3322 433212
Q ss_pred CC-CCEEEeccccc----cCChhHHHHHHHHHHHhCCCC--CEEEEE
Q 018366 251 PE-GDAILMKWILH----CWDDDHCLRILKNCYKAIPDN--GKVIVM 290 (357)
Q Consensus 251 p~-~D~i~~~~~lh----~~~~~~~~~~L~~~~~~Lkpg--G~l~i~ 290 (357)
+. .|+|++-...+ ..+......+|+-+.+.|+|| |.+++-
T Consensus 154 ~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 154 VIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 22 39999877665 121122235688888999999 998883
No 273
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=98.02 E-value=0.00011 Score=66.21 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=102.0
Q ss_pred CCceEEEEcCCcchHHHHHHhh-CCCCeEEEeechHHHHhCCC-----------------------------CCCceEEE
Q 018366 194 NVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDLPHVVQDAPS-----------------------------YAGVEHVG 243 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~-----------------------------~~~v~~~~ 243 (357)
+...|+-+|||-=.....+... .++++++.+|.|++++.-++ .++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999998888888775 36789999999988764221 25678999
Q ss_pred cCCCC--C---------CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh
Q 018366 244 GNMFD--S---------VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL 310 (357)
Q Consensus 244 ~D~~~--~---------~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~ 310 (357)
.|+.+ . ++.. -++++-.+|.+++.++...+|+.+.+... +|.+++.|.+.+.+ .+...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d-------~fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD-------RFGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS-------HHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC-------HHHHHH
Confidence 99976 1 2222 68888999999999999999999999875 56777778875432 111111
Q ss_pred hhhhhh--hc-CC-CccCCHHHHHHHHHHcCCceeEEeec
Q 018366 311 DVLLMT--RD-GG-GRERTKKEFTELAIAAGFKHINFASC 346 (357)
Q Consensus 311 ~~~~~~--~~-~~-~~~~t~~e~~~ll~~aGf~~~~~~~~ 346 (357)
--.+.. .. .+ ...++.++..+.|.++||+.++....
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 111110 00 01 13457899999999999998776654
No 274
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.98 E-value=1.4e-05 Score=79.84 Aligned_cols=111 Identities=12% Similarity=-0.005 Sum_probs=76.4
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC------------------------------------------CC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY------------------------------------------PQ 218 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~------------------------------------------p~ 218 (357)
.+..++.... +.+...|+|.+||+|.++.+.+... ++
T Consensus 178 LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 178 LAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 4445666554 7777899999999999998877642 33
Q ss_pred CeEEEeec-hHHHHhCCCC-------CCceEEEcCCCC-CCC--C-C-CEEEeccccc--cCChhHHHHHHHHHHHh---
Q 018366 219 IKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFD-SVP--E-G-DAILMKWILH--CWDDDHCLRILKNCYKA--- 280 (357)
Q Consensus 219 ~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p--~-~-D~i~~~~~lh--~~~~~~~~~~L~~~~~~--- 280 (357)
.+++++|+ +.+++.++.. ..+++..+|+.+ ..| . . |+|+++=-.. .-..++...+.+.+.+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 57899998 8888877652 348999999987 223 2 3 9999873321 11234555555555544
Q ss_pred CCCCCEEEEEee
Q 018366 281 IPDNGKVIVMNS 292 (357)
Q Consensus 281 LkpgG~l~i~e~ 292 (357)
+.|||++.++..
T Consensus 337 ~~~g~~~~ilt~ 348 (703)
T 3v97_A 337 QFGGWNLSLFSA 348 (703)
T ss_dssp HCTTCEEEEEES
T ss_pred hCCCCeEEEEeC
Confidence 458999999764
No 275
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.98 E-value=6e-06 Score=73.70 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=60.8
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC-----CCceEEEcCCCC-C--CC-
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFD-S--VP- 251 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~p- 251 (357)
.+.+++.+. ..+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+ + ++
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 445666666 56678999999999999999999998889999998 8888777542 579999999866 2 11
Q ss_pred ---CC-CEEEecc
Q 018366 252 ---EG-DAILMKW 260 (357)
Q Consensus 252 ---~~-D~i~~~~ 260 (357)
.. |.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 23 8887643
No 276
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.90 E-value=2.8e-05 Score=69.67 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=68.0
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCC-CC--C--CC-CEEE
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFD-SV--P--EG-DAIL 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~--p--~~-D~i~ 257 (357)
..+..+|||+|||+|..+..+++.. +..+++.+|+ +..++.+++. .+++++.+|+.+ +. + .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999875 4578999998 7777665542 478999999876 21 1 22 9888
Q ss_pred ec------cccccC---------ChhHH-------HHHHHHHHHhCCCCCEEEEEeecc
Q 018366 258 MK------WILHCW---------DDDHC-------LRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 258 ~~------~~lh~~---------~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+- .++... +.++. .++|+++.+.++ ||+|+...-..
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 61 222221 11111 357888877776 89888755433
No 277
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.87 E-value=8.2e-06 Score=78.95 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=75.0
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC------------------CCeEEEeec-hHHHHhCCC------CC
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP------------------QIKAVNFDL-PHVVQDAPS------YA 237 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~ 237 (357)
..+++.+. .....+|+|.+||+|.++..+.+... ...++++|+ +.++..|+. ..
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33455444 44567999999999999888776531 236888888 777766653 12
Q ss_pred C-----ceEEEcCCCC-C-CC-C-CCEEEeccccccCCh------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 238 G-----VEHVGGNMFD-S-VP-E-GDAILMKWILHCWDD------------DHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 238 ~-----v~~~~~D~~~-~-~p-~-~D~i~~~~~lh~~~~------------~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
. +.+..+|.+. + .+ . .|+|+++-.+..... ..-..++.++.+.|||||++.++-+
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 2 7889999887 2 22 2 399998654443211 1124789999999999999998754
No 278
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.85 E-value=2e-05 Score=68.84 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=66.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-h-------HHHHhCCCC-------CCceEEEcCCCCC---CC---
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P-------HVVQDAPSY-------AGVEHVGGNMFDS---VP--- 251 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~~v~~~~~D~~~~---~p--- 251 (357)
.+..+|||+|||+|..+..+++. ..+++++|+ + .+++.+++. .+++++.+|+.+. ++
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence 34579999999999999999986 467899998 7 777776543 4699999998762 33
Q ss_pred CC-CEEEeccccccCC------------------hhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 252 EG-DAILMKWILHCWD------------------DDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 252 ~~-D~i~~~~~lh~~~------------------~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
.. |+|++.-.+++-. +.+...+++.+.++.+ .++++..+..
T Consensus 160 ~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 160 GKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp CCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 33 9999876555421 1234456666666653 3666665543
No 279
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.84 E-value=6.6e-06 Score=75.92 Aligned_cols=97 Identities=9% Similarity=0.053 Sum_probs=66.1
Q ss_pred HHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC------CCceEEEcCCCCC---CC--
Q 018366 184 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFDS---VP-- 251 (357)
Q Consensus 184 ~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~p-- 251 (357)
.+++.+. .. ..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+. .+
T Consensus 205 ~~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~ 280 (369)
T 3bt7_A 205 WALDVTK-GS-KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 280 (369)
T ss_dssp HHHHHTT-TC-CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSC
T ss_pred HHHHHhh-cC-CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhc
Confidence 3444444 33 3689999999999999988854 47888998 7888777642 4789999998651 11
Q ss_pred -------------CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 252 -------------EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 252 -------------~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.. |+|++.---. .+.+++.+.|+|+|+++.+..
T Consensus 281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 281 REFNRLQGIDLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCCTTGGGSCGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEES
T ss_pred cccccccccccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEEC
Confidence 13 8888632111 234456666778899888653
No 280
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.84 E-value=9.9e-06 Score=74.75 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=68.5
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC---------------------CCceEEEcCCCCC---
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFDS--- 249 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~D~~~~--- 249 (357)
..+|||+|||+|..+..+++..+..+++.+|+ +..++.+++. .+++++.+|+.+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 56999999999999999999988888999998 7766655431 1278899998662
Q ss_pred CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 250 VPEG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 250 ~p~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+.. |+|++. ... ....+|..+.+.|||||.+++..
T Consensus 128 ~~~~fD~I~lD-P~~-----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLD-PFG-----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEEC-CSS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeC-CCC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 2333 998853 221 12478999999999999887754
No 281
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.83 E-value=0.00011 Score=66.71 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=67.4
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCCCCCceEEEcCCCCCCC-CC--CEEEeccccccCChh
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVP-EG--DAILMKWILHCWDDD 268 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p-~~--D~i~~~~~lh~~~~~ 268 (357)
+.++.++||+||++|.++..++++ +.+++++|..++-......++|+++.+|.+...| .. |+|+|-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 457789999999999999999987 5789999975554444556899999999998433 33 9999877653 24
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEe
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
....++.+.......++.++.+.
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEE
T ss_pred HhHHHHHHHHhccccceEEEEEE
Confidence 44455555544444445544443
No 282
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.79 E-value=0.00013 Score=63.69 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=66.9
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeech-HHHHhCCC----CCC-ceEEEc-CCCCCCCC
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPS----YAG-VEHVGG-NMFDSVPE 252 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~-v~~~~~-D~~~~~p~ 252 (357)
+.+.++.+. ..+.+..+|||+||++|.++..+++..+-..++++|+. .+...... ..+ +.+..+ |++.-.+.
T Consensus 68 ~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~ 146 (300)
T 3eld_A 68 AKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTE 146 (300)
T ss_dssp HHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCC
Confidence 344556565 43567789999999999999999987654466777762 11111110 012 233322 44332223
Q ss_pred C-CEEEeccccccCCh----h-HHHHHHHHHHHhCCCC-CEEEEE
Q 018366 253 G-DAILMKWILHCWDD----D-HCLRILKNCYKAIPDN-GKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh~~~~----~-~~~~~L~~~~~~Lkpg-G~l~i~ 290 (357)
. |+|++-..-+ -.. + ....+|.-+.+.|+|| |.+++-
T Consensus 147 ~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 147 PSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp CCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 3 9999866555 221 1 2245688888999999 999884
No 283
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.63 E-value=0.00026 Score=60.45 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=64.5
Q ss_pred hhhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCC-eEEEeechH---HHHhCCCCCCc---eEEEc-CCCCCC
Q 018366 179 TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDLPH---VVQDAPSYAGV---EHVGG-NMFDSV 250 (357)
Q Consensus 179 ~~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~~~---~~~~a~~~~~v---~~~~~-D~~~~~ 250 (357)
.+.+.+|-+.. -+++..+|||+||+.|.++...++.- ++ .+.+.++.. .........++ .++.+ |+++..
T Consensus 59 ayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~-~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~ 136 (269)
T 2px2_A 59 TAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMK-NVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP 136 (269)
T ss_dssp HHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC
T ss_pred HHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhc-CCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC
Confidence 33456677765 47888999999999999999988852 22 212333211 11111111355 44447 998743
Q ss_pred CC-CCEEEeccccc---cCChhH-HHHHHHHHHHhCCCCC-EEEE
Q 018366 251 PE-GDAILMKWILH---CWDDDH-CLRILKNCYKAIPDNG-KVIV 289 (357)
Q Consensus 251 p~-~D~i~~~~~lh---~~~~~~-~~~~L~~~~~~LkpgG-~l~i 289 (357)
+. .|+|+|-..=. ...|+. ...+|.-+.+.|+||| .+++
T Consensus 137 ~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv 181 (269)
T 2px2_A 137 SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI 181 (269)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 43 39998744221 111121 2245777778999999 7877
No 284
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.61 E-value=0.00042 Score=58.28 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=71.6
Q ss_pred hhHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHh----CCCC--CCceEEEc-CCCCCCCC
Q 018366 180 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD----APSY--AGVEHVGG-NMFDSVPE 252 (357)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~----a~~~--~~v~~~~~-D~~~~~p~ 252 (357)
+.+.++.+.+. +.+..+|||+||++|.++...+....-.++.++|+-..-.. .+.. +.|+|+.+ |++.-.|.
T Consensus 65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~ 143 (267)
T 3p8z_A 65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE 143 (267)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence 34567777774 77788999999999999998888765557899997222111 1111 56999999 97663333
Q ss_pred -CCEEEeccccccCChh-----HHHHHHHHHHHhCCCCCEEEE
Q 018366 253 -GDAILMKWILHCWDDD-----HCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 253 -~D~i~~~~~lh~~~~~-----~~~~~L~~~~~~LkpgG~l~i 289 (357)
.|+|+|-..= .-+.+ ...++|.-+.+.|++ |-++|
T Consensus 144 ~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 144 KCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred cccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 4998874433 22222 123467777899999 77777
No 285
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.60 E-value=0.0006 Score=60.96 Aligned_cols=144 Identities=9% Similarity=0.001 Sum_probs=93.7
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHHHHhCCC---------CCCceEEEcCCCCCC---------C-CC-
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFDSV---------P-EG- 253 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~---------p-~~- 253 (357)
+...||++|||-=.....+.. .++++++.+|.|.+++..++ .++..++..|+.+.+ . ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456799999998777666542 22478999999988875543 246789999988621 1 11
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhh-hhh-hhh-----hcCCCcc-CC
Q 018366 254 DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLL-DVL-LMT-----RDGGGRE-RT 325 (357)
Q Consensus 254 D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~t 325 (357)
-++++-.+||++++++...+|+.+.+.+.||+.|++ |...++.+ . ......... ... ... -...... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD-E-WREQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS-H-HHHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc-c-hhHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 578889999999999999999999999999888777 44333211 0 000001011 100 000 0001122 36
Q ss_pred -HHHHHHHHHHcCCcee
Q 018366 326 -KKEFTELAIAAGFKHI 341 (357)
Q Consensus 326 -~~e~~~ll~~aGf~~~ 341 (357)
.++..++|.++||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 7899999999999987
No 286
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.59 E-value=2e-05 Score=72.80 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=69.2
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC-CeEEEeec-hHHHHhCCCC-------CC-ceEEEcCCCCC----CCCC-CEEEe
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFDS----VPEG-DAILM 258 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~~----~p~~-D~i~~ 258 (357)
+..+|||++||+|.++..++.+.++ .+++.+|+ +..++.+++. ++ ++++.+|..+. .+.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4579999999999999999998665 46899998 7777766542 34 89999998652 2233 99987
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 259 KWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 259 ~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
-- +.. ...++..+.+.|+|||.|++..
T Consensus 132 DP--~g~----~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FGT----PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SSC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CcC----HHHHHHHHHHHhCCCCEEEEEe
Confidence 54 111 2368999999999999887765
No 287
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.56 E-value=0.00022 Score=70.83 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=67.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhCC---CCeEEEeec-hHHHHhC--C----C------CCCceEEEcCCCCCC--C-CC
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDA--P----S------YAGVEHVGGNMFDSV--P-EG 253 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~------~~~v~~~~~D~~~~~--p-~~ 253 (357)
.+..+|+|.|||+|.++..+++..+ ..+++++|+ +.+++.+ + . .....+...|+..+. + ..
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999998876 346889998 6666655 1 1 122355666666522 2 22
Q ss_pred -CEEEecccccc-CC-hhH-------------------------HHHHHHHHHHhCCCCCEEEEEee
Q 018366 254 -DAILMKWILHC-WD-DDH-------------------------CLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 254 -D~i~~~~~lh~-~~-~~~-------------------------~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
|+|+++=-.-. +. +.. ...++.++.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99998554411 11 111 23478889999999999998765
No 288
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.56 E-value=0.00019 Score=55.89 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=60.9
Q ss_pred CCCceEEEEcCCcc-hHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCC---C-CEEEeccccccCC
Q 018366 193 QNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPE---G-DAILMKWILHCWD 266 (357)
Q Consensus 193 ~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~---~-D~i~~~~~lh~~~ 266 (357)
....+|||||||.| ..+..|++. .+..+++.|+ |..++ ++..|++++..+ . |+|+..+ |
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 35679999999999 588888874 3577888897 44433 888999996652 3 9998766 4
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeecc
Q 018366 267 DDHCLRILKNCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 267 ~~~~~~~L~~~~~~LkpgG~l~i~e~~~ 294 (357)
+.+....+.++.+.. |.-++|.....
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 456666666766653 57777765543
No 289
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.54 E-value=3.4e-05 Score=70.33 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------------CCceEEEcCCCCCC------CC
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFDSV------PE 252 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~~~------p~ 252 (357)
++.+||-||+|.|..++++++. |..+++.+|+ |.+++.+++. +|++++.+|....+ ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4579999999999999999985 4468888888 8888876531 46889999976521 12
Q ss_pred C-CEEEeccccc-------cCC-hhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 253 G-DAILMKWILH-------CWD-DDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 253 ~-D~i~~~~~lh-------~~~-~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
. |+|+.-..=. ... ..-..++++.++++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 9988632110 000 112357899999999999998874
No 290
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.54 E-value=2.6e-05 Score=87.75 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=63.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC-----CeEEEeec-hHHHHhCCCC-C--CceEEEcCCCCC---CCCC-CEEEecc
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-A--GVEHVGGNMFDS---VPEG-DAILMKW 260 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-~--~v~~~~~D~~~~---~p~~-D~i~~~~ 260 (357)
+..+||+||+|+|..+..+.+...+ ..++..|+ +...+.+++. . .++....|..++ .+.. |+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4579999999999887777665532 24666776 4555555543 1 122222233222 2233 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCce
Q 018366 261 ILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKH 340 (357)
Q Consensus 261 ~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 340 (357)
+||.. .+....|+++++.|||||++++.+...... ......++... . ..+....+.++|.++|.++||..
T Consensus 1320 vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~--~-r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATL--GDPAVAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSP--E-QGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred ccccc--ccHHHHHHHHHHhcCCCcEEEEEecccccc-----ccccccccccc--c-ccCCcccCHHHHHHHHHhCCCce
Confidence 99976 455688999999999999999987542110 00000000000 0 01223457788999999999998
Q ss_pred eEEe
Q 018366 341 INFA 344 (357)
Q Consensus 341 ~~~~ 344 (357)
+...
T Consensus 1390 ~~~~ 1393 (2512)
T 2vz8_A 1390 VALK 1393 (2512)
T ss_dssp EEEE
T ss_pred eeec
Confidence 7664
No 291
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.54 E-value=0.00056 Score=59.45 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=70.8
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHH-HH---hCCCC--CCceEEEc-CCCCCCCC-
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV-VQ---DAPSY--AGVEHVGG-NMFDSVPE- 252 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~---~a~~~--~~v~~~~~-D~~~~~p~- 252 (357)
.+.++.+... +.+..+|||+||++|.++...+....-.++.++|+... .+ ..++. .-|.++.+ |++.-.|.
T Consensus 82 KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 82 KLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 4556666654 67778999999999999998777765456889997221 11 01111 23888888 87663233
Q ss_pred CCEEEeccccccCChhH-----HHHHHHHHHHhCCCC-CEEEE
Q 018366 253 GDAILMKWILHCWDDDH-----CLRILKNCYKAIPDN-GKVIV 289 (357)
Q Consensus 253 ~D~i~~~~~lh~~~~~~-----~~~~L~~~~~~Lkpg-G~l~i 289 (357)
.|+|+|--. ..-+.+. ...+|.-+.+.|++| |-++|
T Consensus 161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 499887555 3333322 234677778999998 87777
No 292
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.47 E-value=5.1e-05 Score=73.35 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCC---------------CCeEEEeec-hHHHHhCCCC-------CC
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP---------------QIKAVNFDL-PHVVQDAPSY-------AG 238 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~~ 238 (357)
+..+++.+. .. ..+|+|.+||+|.++..+.+..+ ...++++|+ +.++..|+.. .+
T Consensus 234 v~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 234 VTLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 344555444 33 34999999999999888765432 457899998 7777766531 23
Q ss_pred ceEEEcCCCC-C-CCC-C-CEEEecccccc--CChh-------------------------HHHHHHHHHHHhCCCCCEE
Q 018366 239 VEHVGGNMFD-S-VPE-G-DAILMKWILHC--WDDD-------------------------HCLRILKNCYKAIPDNGKV 287 (357)
Q Consensus 239 v~~~~~D~~~-~-~p~-~-D~i~~~~~lh~--~~~~-------------------------~~~~~L~~~~~~LkpgG~l 287 (357)
+.+..+|.+. + .+. . |+|+++=-+.. |..+ .-..++.++.+.|+|||++
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 4447788776 3 232 3 99998543321 2111 1126899999999999999
Q ss_pred EEEee
Q 018366 288 IVMNS 292 (357)
Q Consensus 288 ~i~e~ 292 (357)
.++-+
T Consensus 392 aiVlP 396 (544)
T 3khk_A 392 ALLLA 396 (544)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88754
No 293
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.40 E-value=0.00049 Score=66.36 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhC---CCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCC-CCC---C-C-CE
Q 018366 194 NVERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFD-SVP---E-G-DA 255 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~p---~-~-D~ 255 (357)
...+|+|.+||+|.++..+.+.. +...++++|+ +.+...|+.. +++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999988875 3567899998 7777666531 356799999887 333 2 2 99
Q ss_pred EEeccccc-cCC---------------------hhHHHHHHHHHHHhCC-CCCEEEEEee
Q 018366 256 ILMKWILH-CWD---------------------DDHCLRILKNCYKAIP-DNGKVIVMNS 292 (357)
Q Consensus 256 i~~~~~lh-~~~---------------------~~~~~~~L~~~~~~Lk-pgG~l~i~e~ 292 (357)
|+++=-+. .|. ..+ ..++.++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEec
Confidence 99752221 111 011 258999999999 9999988764
No 294
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.37 E-value=6e-05 Score=65.57 Aligned_cols=77 Identities=9% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHhhcccCCCC--ceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHH-------HHhCCC-------C-CCceEEEcCC
Q 018366 185 ILEHYEGFQNV--ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV-------VQDAPS-------Y-AGVEHVGGNM 246 (357)
Q Consensus 185 i~~~l~~~~~~--~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~~v~~~~~D~ 246 (357)
+.+.+. .++. .+|||+|||+|..+..++.. +.+++++|. +.+ ++.++. . .+++++.+|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 444443 4444 79999999999999999998 457999998 543 332221 1 3689999998
Q ss_pred CC---CCCCC-CEEEecccccc
Q 018366 247 FD---SVPEG-DAILMKWILHC 264 (357)
Q Consensus 247 ~~---~~p~~-D~i~~~~~lh~ 264 (357)
.+ ..++. |+|++.-.+++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 76 23334 99998776655
No 295
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.36 E-value=0.00021 Score=49.63 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcc-hHHHHHHHHhcCcceeeeccCCCcceecchhchh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPM-MLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKY 108 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~ 108 (357)
.+-.|++.|...||.|+.+||+.+|+ .+. .+++.|..|...|+|...... .-.|.+|+.+..
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~g-RP~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTT-PPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSS-SCEEEECHHHHT
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCC-CCCeEeCHhHHh
Confidence 45567888888889999999999999 788 999999999999999864322 238998887763
No 296
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.27 E-value=0.00084 Score=59.00 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=65.7
Q ss_pred CCCceEEEEcCCcchHHHHHHhhC-----CCCeEEEeec-hH--------------------------HHHhCCC-----
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PH--------------------------VVQDAPS----- 235 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~~----- 235 (357)
..+.+|||+|+..|..+..++... ++.+++++|. .. .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346799999999999888877654 4778888884 10 1111111
Q ss_pred ---CCCceEEEcCCCCC---CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 236 ---YAGVEHVGGNMFDS---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 236 ---~~~v~~~~~D~~~~---~p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.++|+++.||+.+. .+.. |+|++=.-. + +.....|..+...|+|||.|++-+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y--~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--Y--ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--H--HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--c--ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 26799999998762 3322 777764322 1 445688999999999999888833
No 297
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.21 E-value=0.00028 Score=52.71 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=55.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHh--CcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhcCC
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVSNK 113 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~ 113 (357)
.+..|+..|.+.|+.|+.+||+.+ ++ .+..+++.|+.|+..|+|... +.+.|++|+.+..++...
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHHH
Confidence 345688888776799999999999 99 899999999999999999974 245999999998777643
No 298
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.15 E-value=0.0016 Score=54.17 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=58.5
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC---------CCCceEEEcCCCCC--------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFDS-------------- 249 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~-------------- 249 (357)
+..+||||||| .-+..+++ .++.+++.+|. ++..+.+++ ..+|+++.+|..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46799999985 55555665 45778888886 665555543 24689999995431
Q ss_pred ----------CC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 250 ----------VP--EG-DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 250 ----------~p--~~-D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
.+ .. |+|++-.- .....+..+.+.|+|||+|++ |.
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~-DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLF-DD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEE-TT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEE-eC
Confidence 12 22 99987542 113556667799999998855 44
No 299
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.07 E-value=0.00087 Score=49.27 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=48.3
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+|..-.++.|+..|.+ |+.|+.|||+.+|+ .+..+++.|+.|...|+|..........|++++
T Consensus 19 ~l~~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE-GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp HHCSHHHHHHHHHHHT-CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred HcCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 3444456667777766 58999999999999 888999999999999999975322234566654
No 300
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.02 E-value=0.0061 Score=60.85 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=102.3
Q ss_pred CCceEEEEcCCcchHHHHHHhhCC--------CCeEEEeechHHHHhCCC------------------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYP--------QIKAVNFDLPHVVQDAPS------------------------------ 235 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 235 (357)
+...|+-+|||-=.....+...+| +++++.+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999988755 788999999887754321
Q ss_pred CCCceEEEcCCCC--CC----------CCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCC
Q 018366 236 YAGVEHVGGNMFD--SV----------PEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVS 301 (357)
Q Consensus 236 ~~~v~~~~~D~~~--~~----------p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~ 301 (357)
.++..++..|+.+ .+ +.. -++++-.+|.+++.++..++|+.+.+ + |+|.+++.|...+..+..+
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 0367899999987 11 222 67888899999999999999999985 4 7888888898766433222
Q ss_pred chhhhhhhhhhhhhhh--cC--CCccCCHHHHHHHHHHcCCceeEEee
Q 018366 302 SSARETSLLDVLLMTR--DG--GGRERTKKEFTELAIAAGFKHINFAS 345 (357)
Q Consensus 302 ~~~~~~~~~~~~~~~~--~~--~~~~~t~~e~~~ll~~aGf~~~~~~~ 345 (357)
+...+--.+... .. .....+.++..+.|.++||+.+....
T Consensus 265 ----f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 265 ----FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD 308 (695)
T ss_dssp ----HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred ----HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence 111111111110 00 12345799999999999998776654
No 301
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.98 E-value=0.00087 Score=58.40 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=52.6
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC--CCCceEEEcCCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFD 248 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~D~~~ 248 (357)
..+++++.+. ..+...+||.+||.|..+..+++. +.+++++|. |.+++.+++ .+|+.++.+|+.+
T Consensus 10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 3567778776 667789999999999999999998 678999998 777765543 1578999998865
No 302
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.97 E-value=0.00032 Score=65.00 Aligned_cols=64 Identities=20% Similarity=0.361 Sum_probs=49.8
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCCC--------CCceEEEcCCCCCCC-----CCCEEEec
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFDSVP-----EGDAILMK 259 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~p-----~~D~i~~~ 259 (357)
...+|||+|||+|..+..+++.. .+++++|+ +.+++.++.+ .+++++.+|+.+.++ ..|+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 35799999999999999998874 58888998 7787776542 368999999987322 23999873
No 303
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.93 E-value=0.00061 Score=49.69 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=49.8
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
+|..-.++.|+..|.+ |+.|+.|||+.+|+ .+..+++.|+.|...|+|..........|++++.
T Consensus 19 ~l~~~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (98)
T 3jth_A 19 AMANERRLQILCMLHN-QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSE 82 (98)
T ss_dssp HHCSHHHHHHHHHTTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCH
T ss_pred HcCCHHHHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHH
Confidence 4445566778888887 69999999999999 8999999999999999999753222334665543
No 304
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.92 E-value=0.00069 Score=49.35 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=49.4
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 38 TQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 38 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
+..-.++.|+..|..+++.|..+||+.+++ ++..+.+.|+.|...|++.....+....|.+++.
T Consensus 21 l~~~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~ 84 (99)
T 3cuo_A 21 MSHPKRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKNE 84 (99)
T ss_dssp HCSHHHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCH
T ss_pred hCChHHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChH
Confidence 334556778888877558999999999999 8999999999999999999753222234665544
No 305
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.92 E-value=0.00094 Score=50.94 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=50.3
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
..+|..-.++.|+..|...|+.|+.+||+.+|+ .+..+.+.|+.|...|++.....+....|++++.
T Consensus 36 ~~al~~~~rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~ 102 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDE 102 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred HHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence 334555567789999985569999999999999 8999999999999999998642111235665543
No 306
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.82 E-value=0.00073 Score=45.55 Aligned_cols=54 Identities=9% Similarity=0.268 Sum_probs=44.3
Q ss_pred HhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 43 QLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 43 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
+..|++.|.+. +++|..|||+.+|+ ++..+.+.+..|...|+|.. +..+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~---~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSS---PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEec---CCCceEeeC
Confidence 45678888764 38999999999999 89999999999999999875 235778753
No 307
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.77 E-value=0.00084 Score=48.93 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=53.2
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeecc---CCCcceecchhch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---SGERLYGLTPVSK 107 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~---~~~~~y~~t~~~~ 107 (357)
.++..-.++.|+..|...++.|..+||+.+++ ++..+.+.|+.|+..|++..... .....|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 45666677888888865468999999999999 89999999999999999996421 1123577777664
No 308
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.76 E-value=0.0014 Score=47.54 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=50.4
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
++..-.+..|+..| . ++.|..+||+.+++ .+..+.+.|+.|...|+|... . +.|++++.+.
T Consensus 27 ~l~~~~r~~Il~~L-~-~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---~-g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D-KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---G-ERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H-TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---C-CEEEECCCch
Confidence 44455677788888 5 58999999999999 899999999999999999974 2 5888877643
No 309
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.70 E-value=0.00096 Score=50.56 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=52.1
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
.+|..-.++.|+..|.+ ||.|+.+||+.+|+ .+..+++.|+.|...|+|..........|++++..
T Consensus 13 ~al~~~~R~~Il~~L~~-~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~ 78 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR-GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP 78 (118)
T ss_dssp HHHTSHHHHHHHHHHHT-CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHH
Confidence 34555677778888886 69999999999999 89999999999999999987532223457776644
No 310
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.65 E-value=0.0019 Score=44.80 Aligned_cols=58 Identities=14% Similarity=0.270 Sum_probs=47.7
Q ss_pred HHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 42 IQLGVFEIIAKAG---KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 42 ~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
.+..|++.|...+ +.|+.|||+++|+ +...+.+.|+.|...|+|.... ..++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 3566888888876 7999999999999 8899999999999999998753 3356776543
No 311
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.63 E-value=0.0026 Score=44.51 Aligned_cols=61 Identities=13% Similarity=0.268 Sum_probs=47.4
Q ss_pred HHhChhHHHHhCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 42 IQLGVFEIIAKAG---KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 42 ~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
.+..|++.|.+.+ +.|+.+||+++|+ ....+.+.|..|...|+|.... ...+.|...+...
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~ 74 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC----
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHH
Confidence 4556777887776 7999999999999 8889999999999999999753 3357787765544
No 312
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.56 E-value=0.003 Score=44.22 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=39.4
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..|++.|.+.++.|..|||+.+|+ .+..+++.|+.|+..|+|...
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 346777776668999999999999 899999999999999999853
No 313
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.50 E-value=0.002 Score=48.75 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=49.1
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
+|..-.++.|+..|.. |+.+..+||+.+|+ ++..+.+.|+.|...|++.....+....|++++.
T Consensus 17 aL~~~~r~~IL~~L~~-~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 80 (118)
T 2jsc_A 17 ALADPTRCRILVALLD-GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVATYEGRQVRYALADS 80 (118)
T ss_dssp HHSSHHHHHHHHHHHT-TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSH
T ss_pred HhCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEECCEEEEEEChH
Confidence 4444556777777875 58999999999999 8999999999999999999753222335666653
No 314
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.49 E-value=0.0022 Score=47.47 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=41.3
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.-.++.|+..|.+ ++.|+.+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 25 ~~~r~~IL~~L~~-~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3455667777775 58999999999999 899999999999999999975
No 315
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.48 E-value=0.0017 Score=48.62 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
-.++.|+..|.. |+.|..+||+.+++ ++..+.+.|+.|...|+|..........|.+++.+.
T Consensus 21 ~~r~~IL~~L~~-~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 21 ETRWEILTELGR-ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred hHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 345667777754 58999999999999 899999999999999999875322223477766543
No 316
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.46 E-value=0.002 Score=46.96 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=51.2
Q ss_pred HhChhHHHHhCCCCCHHHH----HHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 43 QLGVFEIIAKAGKLSAPEI----AAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~l----a~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
++.++..|...++.|..+| |+.+++ ++..+.+.++.|+..|++.+........|.+|+.+..++.
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAI 78 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHH
Confidence 4456777776668999999 899999 8999999999999999999753333446778887776554
No 317
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.40 E-value=0.0012 Score=49.17 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=44.6
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
-.++.|+..|.+ |+.|+.|||+.+|+ ++..+.+.|+.|...|+|..........|++++
T Consensus 25 ~~r~~IL~~L~~-~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~ 83 (108)
T 2kko_A 25 GRRLQILDLLAQ-GERAVEAIATATGM----NLTTASANLQALKSGGLVEARREGTRQYYRIAG 83 (108)
T ss_dssp STTHHHHHHHTT-CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESC
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 344556667765 58999999999999 899999999999999999965321122455543
No 318
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.37 E-value=0.002 Score=51.03 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 34 LPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 34 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
...+|..-.++.|+..|.+ ++.|+.+||+.+++ .+..+.+.|+.|...|+|..........|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~-~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS-GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG-CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence 3456777788899999986 69999999999999 899999999999999999975322234687776544
No 319
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.27 E-value=0.0033 Score=46.99 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCC--HHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLS--APEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE 97 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t--~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 97 (357)
+...+.+.+.+.|...+| ..|.. |+.+ ..||++.+ |+ .+..+.+.|+.|+..|+|.+... ..
T Consensus 16 ~~~~~l~~l~~~wrl~IL---------~~L~~-g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-r~ 80 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLII---------SVLGN-GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-QI 80 (111)
T ss_dssp TTSSTHHHHHSTTHHHHH---------HHHTS-SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-SS
T ss_pred HHHHHHHHHcCccHHHHH---------HHHhc-CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-Cc
Confidence 344455666666655444 45554 5777 99999999 99 89999999999999999997532 34
Q ss_pred cceecchhchhhhc
Q 018366 98 RLYGLTPVSKYFVS 111 (357)
Q Consensus 98 ~~y~~t~~~~~l~~ 111 (357)
..|++|+.+..+..
T Consensus 81 ~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 81 TTYALTEKGMNVRN 94 (111)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEEECccHHHHHH
Confidence 57999998876553
No 320
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.26 E-value=0.0038 Score=47.54 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=46.3
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
.-.++.|+..|.+ |+.++.+||+.+|+ .+..+.+.|+.|...|++.....+....|++++
T Consensus 45 ~~~rl~IL~~L~~-~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~ 104 (122)
T 1r1t_A 45 DPNRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQD 104 (122)
T ss_dssp CHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 3456677888876 58999999999999 899999999999999999975321123455543
No 321
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.25 E-value=0.014 Score=45.37 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=48.3
Q ss_pred HHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 40 AAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 40 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
+..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 36 t~~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 36 TPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence 3566678888888779999999999999 899999999999999999975322222 3667777665443
No 322
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.20 E-value=0.004 Score=56.65 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=69.9
Q ss_pred CCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC------------CCCceEEEcCCCC--C-CCCC-C
Q 018366 192 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFD--S-VPEG-D 254 (357)
Q Consensus 192 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~--~-~p~~-D 254 (357)
..++.+|||+.+|.|.=+.++++..++..++..|+ +.-+...++ ..++.+...|... + .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56778999999999999999999877667888887 333222211 1457888888765 2 2233 8
Q ss_pred EEEe----cc-----------ccccCChhHH-------HHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 255 AILM----KW-----------ILHCWDDDHC-------LRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 255 ~i~~----~~-----------~lh~~~~~~~-------~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
.|++ +. +.+.+..++. .++|.++.+.|||||+|+-..-.+.
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 8874 32 1222332222 4789999999999999887665543
No 323
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.17 E-value=0.0091 Score=53.28 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=54.2
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-CCCeEEEeec-hHHHHhCCC--CCCceEEEcCCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFD 248 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~D~~~ 248 (357)
..+++++.+. ..+...++|..+|.|..+..+++.. |+.+++++|. |.+++.++. .+|+.++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567888887 6677899999999999999999985 7889999999 788887643 2577888877654
No 324
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.12 E-value=0.0081 Score=44.45 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=52.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC---c
Q 018366 23 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---R 98 (357)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~ 98 (357)
..+.+++.+-|...+ +..|.. |+.+..||++.+ ++ ++..+.+.|+.|+..|+|.+.....+ -
T Consensus 5 ~~~l~~l~~~~~~~I---------L~~L~~-~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~ 70 (107)
T 2hzt_A 5 EATLEVIGGKWKXVI---------LXHLTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKV 70 (107)
T ss_dssp HHHHHHHCSTTHHHH---------HHHHTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEE
T ss_pred HHHHHHHcCccHHHH---------HHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeE
Confidence 344555555555444 444443 589999999999 99 89999999999999999997643221 2
Q ss_pred ceecchhchhhh
Q 018366 99 LYGLTPVSKYFV 110 (357)
Q Consensus 99 ~y~~t~~~~~l~ 110 (357)
.|.+|+.+..+.
T Consensus 71 ~y~LT~~G~~l~ 82 (107)
T 2hzt_A 71 EYELSEYGRSLE 82 (107)
T ss_dssp EEEECTTGGGGH
T ss_pred EEEECccHHHHH
Confidence 588887765443
No 325
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.02 E-value=0.036 Score=48.95 Aligned_cols=121 Identities=18% Similarity=0.266 Sum_probs=70.0
Q ss_pred CCceEEEEcCCcchHHHH----HHhhCCCCeE--EEeechHHHH------------------hCCC--CCC--ceEEEcC
Q 018366 194 NVERLVDVGGGFGVTLSM----ITSKYPQIKA--VNFDLPHVVQ------------------DAPS--YAG--VEHVGGN 245 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~----l~~~~p~~~~--~~~D~~~~~~------------------~a~~--~~~--v~~~~~D 245 (357)
+.-+|+|+|=|+|..... +.+..|+.+. +.++. ..+. .... ..+ +.+..||
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 446899999999976543 3345677654 44442 1110 0000 123 3566788
Q ss_pred CCC---CCCC-C-CEEEeccccccCC-hhHHHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcC
Q 018366 246 MFD---SVPE-G-DAILMKWILHCWD-DDHCLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDG 319 (357)
Q Consensus 246 ~~~---~~p~-~-D~i~~~~~lh~~~-~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (357)
+.+ .++. . |++++-..=-.-. +=...++++++++.++|||.+.-..
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt---------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS---------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC----------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe----------------------------
Confidence 765 2333 2 8887633111111 1122589999999999999876411
Q ss_pred CCccCCHHHHHHHHHHcCCceeEEeecCC
Q 018366 320 GGRERTKKEFTELAIAAGFKHINFASCVC 348 (357)
Q Consensus 320 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 348 (357)
....+++-|++|||++.++-..+.
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~g~ 250 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREIGR 250 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC--
T ss_pred -----CcHHHHHHHHHCCCEEEecCCCCC
Confidence 134577889999999877655443
No 326
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.96 E-value=0.0072 Score=41.85 Aligned_cols=43 Identities=26% Similarity=0.334 Sum_probs=39.8
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|.+.|.+.|.+++.|||+.+++ .+.-++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 6778888789999999999999 999999999999999999974
No 327
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.95 E-value=0.013 Score=46.65 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=52.9
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 344558888888779999999999999 899999999999999999986432222 3677777765553
No 328
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=95.92 E-value=0.0045 Score=45.15 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=45.2
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 38 TQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 38 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
|..-.++.|+..|...|+.|+.+||+.+|+ .+..+++.|+.|... ++.....+....|++++.
T Consensus 24 L~~~~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~ 86 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNP 86 (99)
T ss_dssp HCSHHHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCH
T ss_pred hCCHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChH
Confidence 334456667744443368999999999999 899999999999999 998643222234665543
No 329
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.92 E-value=0.0096 Score=53.98 Aligned_cols=65 Identities=11% Similarity=0.228 Sum_probs=44.2
Q ss_pred HHHHhhcccCC------CCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC---CCCCceEEEcCCCC
Q 018366 183 ERILEHYEGFQ------NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFD 248 (357)
Q Consensus 183 ~~i~~~l~~~~------~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~~v~~~~~D~~~ 248 (357)
+.|++.+. +. +...|||||+|.|.++..|++....-+++.+++ +..+...+ ..++++++.+|+++
T Consensus 42 ~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 42 NKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp HHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 45666554 32 347899999999999999998743234555554 43333322 34789999999975
No 330
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.89 E-value=0.0069 Score=42.78 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.9
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
|.+.|.+.|.+|+.|||+.+++ .+.-++|-|+.|+..|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 6778888789999999999999 999999999999999999975
No 331
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.85 E-value=0.0099 Score=45.79 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=51.2
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..+.
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 345567888887778999999999999 89999999999999999997532222 2366777766554
No 332
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=95.80 E-value=0.0071 Score=53.02 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=46.1
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|...+ +.|+.|||+++|+ ++.-+.|+|..|+..|+|.++ .++.|++.+...
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~---~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS---ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC---TTSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCcEEehHHHH
Confidence 45788887754 7999999999999 899999999999999999964 347899887643
No 333
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.78 E-value=0.0085 Score=41.66 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=46.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
.....|++.|.+. +.|+.+||+++|+ .+..+++.|..|+..|+|.... ..+-.|+++..
T Consensus 17 ~~~~~IL~lL~~~-g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGIE-GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-DIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSSS-TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-SSSCEEESCC-
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCcceeccC
Confidence 3455677888876 4999999999999 8999999999999999999752 23456766544
No 334
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.73 E-value=0.01 Score=45.75 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=50.5
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 29 ~~~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 29 DAQVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 345557778877679999999999999 899999999999999999975322222 266676665444
No 335
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.72 E-value=0.01 Score=46.28 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=52.8
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+...+.++ .+.+|+.+..+..
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 345668888877678999999999999 899999999999999999975322222 4778887776553
No 336
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.70 E-value=0.01 Score=45.75 Aligned_cols=66 Identities=24% Similarity=0.194 Sum_probs=50.8
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|......+++ .+.+|+.+..+..
T Consensus 35 ~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 34557777776568999999999999 999999999999999999975322222 3677777765543
No 337
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.68 E-value=0.011 Score=44.05 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC--
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE-- 97 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-- 97 (357)
....+.+++.+.|...+| ..|.. |+.+..+||+.+ ++ ++..+.+.|+.|+..|+|.......+
T Consensus 11 ~~~~~l~~l~~~~~~~IL---------~~L~~-~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLM---------DELFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp HHHHHHHTTCSTTHHHHH---------HHHHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CHHHHHHHHcCccHHHHH---------HHHHh-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 344555555555554443 44554 489999999999 99 89999999999999999997643221
Q ss_pred -cceecchhchhhh
Q 018366 98 -RLYGLTPVSKYFV 110 (357)
Q Consensus 98 -~~y~~t~~~~~l~ 110 (357)
-.|.+|+.+..+.
T Consensus 77 ~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 77 RVEYTLTPEGYALY 90 (112)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECHhHHHHH
Confidence 2488888876554
No 338
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.68 E-value=0.016 Score=44.47 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCC---
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSG--- 96 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--- 96 (357)
+.....+++.+-|...+|.. |.. |+.+..||++.+ ++ .+..|.+.|+.|+..|+|.+....+
T Consensus 15 pi~~~l~~lg~kW~l~IL~~---------L~~-g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d~r 80 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYH---------MID-GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQVPP 80 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHH---------HTT-SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred cHHHHHHHHcCcCHHHHHHH---------Hhc-CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 56777788888887766654 333 589999999999 99 8999999999999999999764322
Q ss_pred Ccceecchhchhhhc
Q 018366 97 ERLYGLTPVSKYFVS 111 (357)
Q Consensus 97 ~~~y~~t~~~~~l~~ 111 (357)
.-.|++|+.+..+..
T Consensus 81 ~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 81 KVEYSLTEFGRTLEP 95 (131)
T ss_dssp EEEEEECTTGGGGHH
T ss_pred eEEEEECHhHHHHHH
Confidence 235889888876654
No 339
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.67 E-value=0.028 Score=42.19 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=51.4
Q ss_pred CCCCCchhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcce
Q 018366 10 PKQNNKYEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 89 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l 89 (357)
|++.-..-....+..+.+++. ++....++.|+..|.+ ++.|..+||+.+++ ++..+.+.|+.|+..|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~il~~L~~-~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv 75 (119)
T 2lkp_A 7 RNRPSAPLDSQAAAQVASTLQ------ALATPSRLMILTQLRN-GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLV 75 (119)
T ss_dssp CCCCCSCCHHHHHHHHHHHHH------HHCCHHHHHHHHHHHH-CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSE
T ss_pred CCccccccCHHHHHHHHHHHH------HhCCHHHHHHHHHHHH-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCE
Confidence 444444444444444433333 2233456777778877 58999999999999 999999999999999999
Q ss_pred eee
Q 018366 90 ECS 92 (357)
Q Consensus 90 ~~~ 92 (357)
...
T Consensus 76 ~~~ 78 (119)
T 2lkp_A 76 VGD 78 (119)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 340
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.67 E-value=0.017 Score=44.55 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=53.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC---Ccceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG---ERLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|++....... ...|.+|+.+..+.
T Consensus 31 ~~~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 31 LTRYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345568888877668999999999999 8999999999999999999764322 22477888887666
No 341
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.61 E-value=0.0097 Score=41.66 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.+..|++.|.+. ++.|++||++.+ ++ +..-+.|.|+.|+..|+|.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence 455688888764 489999999999 88 8889999999999999999753
No 342
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.60 E-value=0.015 Score=45.30 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=52.2
Q ss_pred HHHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 40 AAIQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 40 ~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
+..++.++..|.. .++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..++.
T Consensus 34 ~~~~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 4456778888887 679999999999999 89999999999999999997532211 23677777765543
No 343
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.58 E-value=0.0094 Score=46.00 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=51.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 38 PTQWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 345668888877669999999999999 899999999999999999975322222 367777766544
No 344
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.58 E-value=0.011 Score=50.79 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=52.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
.++.|+..|.+.++.|..|||+.+++ ++..+.|.|+.|...|++.+. .....|.+|+.+..+..
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHH
Confidence 34557777755568999999999999 999999999999999999975 23568999999886654
No 345
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.57 E-value=0.0089 Score=41.25 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+|.|+.|||+++|+ .+..+++-|..|+..|+|...
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 59999999999999 788899999999999999975
No 346
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.55 E-value=0.016 Score=41.90 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=47.9
Q ss_pred hhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 46 VFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 46 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
|+..+.. | .+..+||..+|+ +++.+++.++.|...|++... .+.|.+|+.+..++.
T Consensus 13 IL~~i~~-~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~----~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 13 ILEACKS-G-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE----GKQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHTT-C-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECHHHHHHHH
T ss_pred HHHHHHc-C-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE----CCeeEEChhHHHHHH
Confidence 4555554 4 899999999999 999999999999999999974 456999999997775
No 347
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.54 E-value=0.011 Score=46.11 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=50.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC---Ccceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG---ERLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~~~~l~~ 111 (357)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.....+. ...+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 456668888888779999999999999 8999999999999999999753221 234667777665543
No 348
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.53 E-value=0.0081 Score=46.70 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=51.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+...+.+ ..+.+|+.+..++.
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence 445557788877679999999999999 89999999999999999997532222 24677777765553
No 349
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.52 E-value=0.012 Score=46.10 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=49.6
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 44 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 4557788877679999999999999 899999999999999999975322222 366777766554
No 350
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.50 E-value=0.013 Score=45.50 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=44.5
Q ss_pred HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 51 AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 51 ~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
...++.|..+||+.+++ ++..+.+.++.|+..|+|... ....|.+|+.+..+.
T Consensus 18 ~~~~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 18 EEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIG 70 (142)
T ss_dssp HHHSSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred hhcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHH
Confidence 33358999999999999 899999999999999999964 246788998876554
No 351
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.49 E-value=0.016 Score=44.98 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=48.5
Q ss_pred HhChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEII-AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L-~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.++..| ...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..++
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 44577888 65569999999999999 899999999999999999975322122 356666655444
No 352
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.48 E-value=0.013 Score=45.09 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-CcCCCCCcchHHHHHHHHhcCcceeeeccCCC--
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE-- 97 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-- 97 (357)
....+.+++.+-|...+ +..|.. |+.+..+|++.+ ++ .+..+.+.|+.|+..|+|.+.....+
T Consensus 24 ~~~~~l~~l~~~w~l~I---------L~~L~~-g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r 89 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLI---------LVALRD-GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPP 89 (131)
T ss_dssp THHHHHHHHHSHHHHHH---------HHHGGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred CHHHHHHHHcCCcHHHH---------HHHHHc-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCC
Confidence 34555566655555444 344444 589999999999 79 89999999999999999997543221
Q ss_pred -cceecchhchhhh
Q 018366 98 -RLYGLTPVSKYFV 110 (357)
Q Consensus 98 -~~y~~t~~~~~l~ 110 (357)
-.|.+|+.+..+.
T Consensus 90 ~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 90 HVEYSLTPLGEQVS 103 (131)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECccHHHHH
Confidence 2589998887555
No 353
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.48 E-value=0.016 Score=45.05 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=50.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|. .++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..++
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 34555778888 679999999999999 899999999999999999975322222 366777766544
No 354
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.44 E-value=0.022 Score=45.34 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
++.|+++||+.+++ ++..++++|..|...|+|.... +.+|.|.++
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~La 87 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR-GAHGGYVLN 87 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-STTCEEEEC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec-CCCCceEec
Confidence 48999999999999 9999999999999999999753 335678753
No 355
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.44 E-value=0.053 Score=52.09 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=68.5
Q ss_pred HHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhC-------------CCCeEEEeec-hHHHHhCCC------CCCceE
Q 018366 182 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPS------YAGVEH 241 (357)
Q Consensus 182 ~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~~v~~ 241 (357)
++-+++.+. .....+|+|-.||+|.++....+.. ....+.++|+ +.+...++. ...-.+
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 334455454 4556799999999999987765432 1245788887 666665543 133466
Q ss_pred EEcCCCC-CCC----C--CCEEEecccccc-C--------C-----hhHHHHHHHHHHHhCC-------CCCEEEEEee
Q 018366 242 VGGNMFD-SVP----E--GDAILMKWILHC-W--------D-----DDHCLRILKNCYKAIP-------DNGKVIVMNS 292 (357)
Q Consensus 242 ~~~D~~~-~~p----~--~D~i~~~~~lh~-~--------~-----~~~~~~~L~~~~~~Lk-------pgG~l~i~e~ 292 (357)
..+|.+. +.. . .|+|+.+=-+-. + + .+....++..+.+.|| |||++.++-+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 7788765 321 1 299987654421 1 0 1112356778888886 7999998764
No 356
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.43 E-value=0.014 Score=45.29 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=50.2
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 4457778877678999999999999 899999999999999999975322222 366777766554
No 357
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.42 E-value=0.024 Score=43.33 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|.++||+.+++ ++..++++|..|...|+|.... +..+.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR-GAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC-CCCCceEeCC
Confidence 48999999999999 9999999999999999998642 2246777543
No 358
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.42 E-value=0.068 Score=41.76 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=46.7
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec--cCCC---cceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV--SSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~--~~~~---~~y~~t~~~~~l~ 110 (357)
++.++..| ..++.|..+||+.+++ ++..+.+.++.|+..|+|.... .+.+ -.+.+|+.+..++
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-HcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 34478888 5579999999999999 8999999999999999999621 1112 2356666666544
No 359
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.36 E-value=0.013 Score=46.18 Aligned_cols=66 Identities=8% Similarity=0.078 Sum_probs=50.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..++.
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence 45567888877679999999999999 89999999999999999997532112 24677777765543
No 360
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.35 E-value=0.0074 Score=46.83 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=50.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.++++.|+..|+|.+...+++ ..+.+|+.+..+..
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 44557777776679999999999999 99999999999999999997632222 24677777765553
No 361
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.34 E-value=0.027 Score=44.64 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=49.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..|.+|+.+..++
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 45568888887679999999999999 89999999999999999997431111 3466777666544
No 362
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.33 E-value=0.015 Score=45.82 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=51.5
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee--eccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC--SVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+ .....++ .+.+|+.+..+..
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 45567888887778999999999999 89999999999999999997 4322222 4778887775553
No 363
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.33 E-value=0.015 Score=42.94 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCcceeeeccCCC--
Q 018366 21 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSSGE-- 97 (357)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-- 97 (357)
....+.+++.+.|...+|. .|.. |+.+..||++.++ + .+..+.+.|+.|+..|+|.+...+.+
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d~r 79 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPP 79 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh-CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 4566667777776665544 4443 5899999999995 9 89999999999999999997543221
Q ss_pred -cceecchhchhhh
Q 018366 98 -RLYGLTPVSKYFV 110 (357)
Q Consensus 98 -~~y~~t~~~~~l~ 110 (357)
..|.+|+.+..+.
T Consensus 80 ~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 80 RVEYSLTPLGEKVL 93 (107)
T ss_dssp EEEEEECHHHHTTH
T ss_pred eeEEEECccHHHHH
Confidence 3588988876544
No 364
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.31 E-value=0.011 Score=50.62 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=48.4
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhh
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYF 109 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l 109 (357)
+.|++.|.+.+ +.|+.|||+++|+ ++.-+.|+|+.|+..|+|.+.. +++.|++++....+
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~--~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG--PAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG--GGCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC--CCCeEEECHHHHHH
Confidence 45677776644 7999999999999 8999999999999999999742 24789988765433
No 365
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.28 E-value=0.051 Score=43.45 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=52.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+..
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 345567888877679999999999999 899999999999999999975322222 3677777765543
No 366
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.25 E-value=0.047 Score=43.26 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=50.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+....++ ..+.+|+.+..++.
T Consensus 54 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 54 PKLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 34557888877669999999999999 89999999999999999997532222 24677777765553
No 367
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.24 E-value=0.018 Score=49.68 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=47.0
Q ss_pred hChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 44 LGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 44 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
+.|++.|.+.+ +.|+.|||+++|+ ++.-+.|+|+.|+..|++... .++.|++++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~---~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC---CCCcEEECHHH
Confidence 45677777644 7999999999999 899999999999999999963 35789987754
No 368
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.23 E-value=0.016 Score=45.02 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=51.9
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .|.+|+.+..+..
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 345667788877668999999999999 899999999999999999975322222 4677777765553
No 369
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.22 E-value=0.011 Score=45.73 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=51.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 345667888877668999999999999 899999999999999999975322222 366777766554
No 370
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.19 E-value=0.011 Score=46.47 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=49.5
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+...++++ .+.+|+.+..++
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 445667888887779999999999999 999999999999999999975322222 366777666544
No 371
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=95.18 E-value=0.033 Score=44.54 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=45.2
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++|++.+.+..- .+++.|.++||+.+++ ++..+++++..|...|+|... +..+|.|++..
T Consensus 13 yAlr~l~~La~~----~~~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar 72 (162)
T 3k69_A 13 VAVHSILYLDAH----RDSKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGT-VGKNGGYQLDL 72 (162)
T ss_dssp HHHHHHHHHHTT----TTSCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEE-CSTTCEEECCS
T ss_pred HHHHHHHHHHhC----CCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-cCCCCCeEecC
Confidence 455555544432 1238999999999999 999999999999999999865 23356787654
No 372
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.17 E-value=0.018 Score=44.44 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=50.9
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...+ +.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..++.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 4555777787765 8999999999999 89999999999999999997643222 23667777765553
No 373
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.15 E-value=0.015 Score=46.12 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=49.4
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
+.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 53 ~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 119 (159)
T 3s2w_A 53 FPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEP 119 (159)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHH
Confidence 446777777679999999999999 899999999999999999976422222 4667777765543
No 374
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=95.15 E-value=0.028 Score=48.94 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=57.6
Q ss_pred CCCceEEEEcC------CcchHHHHHHhhCCC-CeEEEeechHHHHhCCCCCCceEEEcCCCCC-CCCC-CEEEeccc--
Q 018366 193 QNVERLVDVGG------GFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFDS-VPEG-DAILMKWI-- 261 (357)
Q Consensus 193 ~~~~~vLDiG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-~p~~-D~i~~~~~-- 261 (357)
+-..+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+ . .++.+|..+. .+.. |+|++=..
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAPN 180 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYDP 180 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCCT
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCCC
Confidence 45689999996 66773 34445776 689999985544322 2 4488887652 2222 88874221
Q ss_pred --cc-cC----ChhHHHHHHHHHHHhCCCCCEEEEE
Q 018366 262 --LH-CW----DDDHCLRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 262 --lh-~~----~~~~~~~~L~~~~~~LkpgG~l~i~ 290 (357)
=+ +. ...-++.++.=+.+.|+|||.+++-
T Consensus 181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 11 00 1124667788888999999999983
No 375
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.14 E-value=0.02 Score=44.90 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=50.7
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 35557888887679999999999999 89999999999999999997532212 2466777666544
No 376
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.13 E-value=0.022 Score=44.83 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=51.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..+.
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 446667888877668999999999999 89999999999999999997532212 2366777766554
No 377
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.06 E-value=0.029 Score=43.23 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=49.4
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++.++..|...+ +.|..+||+.+++ ++..+.+.++.|+..|+|......+++ .+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 3455777887765 7999999999999 899999999999999999975322222 355666665443
No 378
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.06 E-value=0.019 Score=45.65 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
..++.|+..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..++
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 445668888887779999999999999 89999999999999999997532212 2366777766444
No 379
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.03 E-value=0.028 Score=43.60 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++ |..+||+.+++ ++..+.+.++.|+..|+|.+...+.++ .+.+|+.+..+..
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 345668888888766 99999999999 999999999999999999986422222 4778887775553
No 380
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.02 E-value=0.019 Score=42.07 Aligned_cols=48 Identities=15% Similarity=0.363 Sum_probs=41.3
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..+..|+..|...++.|..+||+.+++ ++..+.+.|+.|+..|+|...
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 345566777766568999999999999 999999999999999999975
No 381
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.98 E-value=0.023 Score=43.92 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=52.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+..
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 446668888887678999999999999 889999999999999999975422122 4667777665443
No 382
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.98 E-value=0.025 Score=43.89 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=48.2
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
..++.|+..|...+ .|..+||+.+++ ++..+.+.++.|+..|+|.....+++ ..+.+|+.+..+.
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 45667888888865 999999999999 99999999999999999997532112 2466666665444
No 383
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=94.95 E-value=0.03 Score=44.30 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=48.3
Q ss_pred HHhChhHHH-HhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEII-AKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L-~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++.++..| ...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 355588888 45568999999999999 899999999999999999975322122 366777766544
No 384
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=94.94 E-value=0.009 Score=51.90 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=47.0
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|.+. ++.|+.|||+++|+ ++.-+.|+|..|+..|+|.++ .+.+.|++.+...
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~--~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV--EGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC--SSSSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEcCHHHH
Confidence 3466666652 48999999999999 999999999999999999974 2347899877643
No 385
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.91 E-value=0.023 Score=44.58 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=51.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|......++ ..+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 45567888887679999999999999 89999999999999999997532212 24777887775554
No 386
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.90 E-value=0.028 Score=40.36 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=46.0
Q ss_pred hhHHHHhCC-CCCHHHHHHHhCcCCCCCcch-HHHHHHHHhcCcceeeeccC-CCcceecchhchhhh
Q 018366 46 VFEIIAKAG-KLSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECSVSS-GERLYGLTPVSKYFV 110 (357)
Q Consensus 46 lfd~L~~~g-~~t~~~la~~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~-~~~~y~~t~~~~~l~ 110 (357)
++..|...+ +.|..+||+.+++ ++.. +.+.++.|+..|+|...+.+ ....+.+|+.+..+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence 455566655 7999999999999 8999 99999999999999943221 123467777776554
No 387
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.90 E-value=0.038 Score=43.13 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++.|+++||+.+++ ++..++++|..|...|+|.... ..+|.|.++.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS-SSSSEEEESS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC-CCCCCeeecC
Confidence 38999999999999 9999999999999999998642 3356787643
No 388
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.87 E-value=0.034 Score=43.57 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC--Ccce
Q 018366 23 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG--ERLY 100 (357)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~y 100 (357)
....+++..-|...+|. .|.. |+.+..||++.+++ .+..+.+.|+.|+..|+|.+..... ...|
T Consensus 15 ~~~l~~l~~~w~l~IL~---------~L~~-g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y 80 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVR---------DAFE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEY 80 (146)
T ss_dssp TTTHHHHCSSSHHHHHH---------HHHT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEE
T ss_pred HHHHHHhCCchHHHHHH---------HHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCCeEEE
Confidence 34556666666555444 3333 48999999999999 8999999999999999999754211 2368
Q ss_pred ecchhchhhh
Q 018366 101 GLTPVSKYFV 110 (357)
Q Consensus 101 ~~t~~~~~l~ 110 (357)
.+|+.+..+.
T Consensus 81 ~LT~~G~~l~ 90 (146)
T 2f2e_A 81 RLTDKGRALF 90 (146)
T ss_dssp EECHHHHTTH
T ss_pred EECchHHHHH
Confidence 8888876544
No 389
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.82 E-value=0.023 Score=45.53 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=50.0
Q ss_pred HHHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 41 AIQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
..++.++..|.. .++.|..+||+.+++ ++..+.+.++.|+..|+|.+....++ ..+.+|+.+..++.
T Consensus 53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 345667888876 458999999999999 99999999999999999997532222 24667777665543
No 390
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.80 E-value=0.035 Score=43.71 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=43.6
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
++|++.+.+... .. ++.|+++||+.+++ ++..+++++..|...|+|.... + .|.|.++.
T Consensus 15 yAl~~L~~La~~---~~-~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r-G-~GGy~L~~ 73 (149)
T 1ylf_A 15 IAVHILSILKNN---PS-SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR-G-PGGAGLLK 73 (149)
T ss_dssp HHHHHHHHHHHS---CG-GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred HHHHHHHHHHhC---CC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc-C-CCceEeCC
Confidence 455555555432 22 38999999999999 9999999999999999999752 2 67787644
No 391
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.79 E-value=0.015 Score=44.29 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=50.0
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 38 EEFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 345577777765 68999999999999 899999999999999999975322222 3567777665443
No 392
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.70 E-value=0.019 Score=44.86 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=42.0
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+...++++ .+.+|+.+..++
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 344577777765 68999999999999 899999999999999999975322222 356666666544
No 393
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.68 E-value=0.016 Score=45.08 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=51.7
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 345567777776568999999999999 89999999999999999997532212 23677777775554
No 394
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.61 E-value=0.023 Score=39.58 Aligned_cols=51 Identities=22% Similarity=0.347 Sum_probs=40.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|++.|.+.++.|+.||++.++......+.-+.++|+.|+..|+|...
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456677777766699999999999731011678899999999999999975
No 395
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.58 E-value=0.12 Score=40.38 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=49.4
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.|+..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.......++ .+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 4447788877668999999999999 899999999999999999975322122 366777666444
No 396
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=94.49 E-value=0.04 Score=39.44 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=50.8
Q ss_pred HhChhHHHHhCCCCCHHHHHH-HhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 43 QLGVFEIIAKAGKLSAPEIAA-QLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~-~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
++.|+-.|.+.++.|+.+||+ ..++ +...+.|-++.|...|+|.. .++| +.+|+.+..++.
T Consensus 18 QfsiL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHHH
Confidence 455677788877999999999 9999 99999999999999999983 2334 888988886664
No 397
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.46 E-value=0.03 Score=49.53 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=38.7
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 235 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 235 (357)
.+..++..+. .+...|||++||+|..+.++++.. .+++++|+ +.+++.+++
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence 4455666554 356799999999999999988763 57889998 777777654
No 398
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.36 E-value=0.033 Score=43.54 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 41 AIQLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 41 a~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
..++.++..|...+ +.|..+||+.+++ ++..+.+.++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 44566777786543 7899999999999 899999999999999999975322222 2667777765553
No 399
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=94.28 E-value=0.05 Score=45.19 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=50.9
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC-----CCcceecchhch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSK 107 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~~~ 107 (357)
.+|..-.++.|+..|.. +|.|..+||+.+++ ++..+.+.|+.|...|+|...... ....|++++...
T Consensus 10 kaL~~~~rl~IL~~L~~-~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 34555566777777766 59999999999999 899999999999999999975321 122466666543
No 400
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=94.21 E-value=0.033 Score=48.20 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=47.7
Q ss_pred hChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 44 LGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 44 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
+.|++.|... ++.|+.|||+++|+ ++.-+.|+|..|+..|++.+. ++.|++++....+-
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~----~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS----GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC----CCEEEEcHHHHHHH
Confidence 3466666542 48999999999999 899999999999999999963 48899987754443
No 401
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.17 E-value=0.047 Score=44.71 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=54.0
Q ss_pred HHHHhChhHHHHh--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhhc
Q 018366 40 AAIQLGVFEIIAK--AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFVS 111 (357)
Q Consensus 40 ~a~~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 111 (357)
+..++.++..|.. .++.|..+||+.+++ ++..+.+.++.|+..|+|.......+ ..+.+|+.+..++.
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 4556778888875 348999999999999 89999999999999999998643222 34778888876654
No 402
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.03 E-value=0.064 Score=41.33 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 53 AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 53 ~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
+++.|..+||+.+++ ++..+.+.++.|+..|+|... .+.|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~----~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK----EDGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec----CCeEEEChhHHHHH
Confidence 358999999999999 899999999999999999964 26788888776443
No 403
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.99 E-value=0.083 Score=41.51 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=48.6
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 43 QLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 43 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
++.++-.|...+ +.+..+||+.+++ ++..+.++++.|+..|+|.+...++++ ...+|+.+..++.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 444666776533 6788999999999 999999999999999999976433333 3667777665543
No 404
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=93.93 E-value=0.03 Score=48.53 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=45.3
Q ss_pred hChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhch
Q 018366 44 LGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSK 107 (357)
Q Consensus 44 lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~ 107 (357)
+.|++.|.. .++.|+.|||+++|+ ++.-+.|+|+.|+..|++... ..+.|++++...
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR---ADGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCeEEecHHHH
Confidence 345666643 348999999999999 899999999999999999974 223899887643
No 405
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.78 E-value=0.051 Score=40.15 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=38.6
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++.|+..+...| +.|..+||+.+|+ ++..+++.|..|...|+|...
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 445666664334 7999999999999 899999999999999999864
No 406
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=93.75 E-value=0.032 Score=48.53 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=45.6
Q ss_pred hChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhc
Q 018366 44 LGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVS 106 (357)
Q Consensus 44 lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~ 106 (357)
+.|++.|.. .++.|+.|||+++|+ ++.-+.|+|..|+..|++.+ + ++.|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~---~-~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVAT---D-GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE---S-SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe---c-CCEEEEcHHH
Confidence 346666654 248999999999999 89999999999999999996 2 5889987764
No 407
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.67 E-value=0.1 Score=41.10 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhh
Q 018366 49 IIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFV 110 (357)
Q Consensus 49 ~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~ 110 (357)
.|..+++.|..+||+.+++ ++..+++.++.|+..|+|... .+..+.+|+.+..+.
T Consensus 48 ~l~~~~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI---PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE---TTTEEEECHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe---cCCceEEChhHHHHH
Confidence 4444458999999999999 899999999999999999864 245677887776544
No 408
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=93.57 E-value=0.039 Score=39.65 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=40.4
Q ss_pred CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccC-CCcceecchhchhhhc
Q 018366 56 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGLTPVSKYFVS 111 (357)
Q Consensus 56 ~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~t~~~~~l~~ 111 (357)
.|..+||+.+++ ++..+.++++.|+..|+|... .+ ....|.+|+.+..+..
T Consensus 31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~-~d~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE-LEGRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-EETTEEEEEECHHHHHHHH
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC-CCCCeEEEEEChhHHHHHH
Confidence 899999999999 899999999999999999421 11 1225888888775553
No 409
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=93.54 E-value=0.055 Score=43.20 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHH
Confidence 455577777773 48999999999999 889999999999999999976432222 3667777765553
No 410
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=93.53 E-value=0.1 Score=37.50 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC-Ccceecchhchhhh
Q 018366 54 GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG-ERLYGLTPVSKYFV 110 (357)
Q Consensus 54 g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~~y~~t~~~~~l~ 110 (357)
++.+..+||+.+++ +...|.|.|..|+..|+|......+ .+...+|+.+..++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 47899999999999 9999999999999999999754321 22356666665444
No 411
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.40 E-value=0.041 Score=43.08 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=45.8
Q ss_pred ChhHHHH--hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 45 GVFEIIA--KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 45 glfd~L~--~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.++..|. .+|+.|..+||+.+++ ++..+.++++-|+..|+|.+....+++ ...+|+.+..++
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 3455553 2347999999999999 999999999999999999986433222 366777776554
No 412
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.24 E-value=0.047 Score=45.53 Aligned_cols=66 Identities=15% Similarity=-0.032 Sum_probs=51.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~~ 111 (357)
.++.|+..|...++.|..+||+.+++ ++..+.++++.|+..|+|.+.....++ .+.+|+.+..++.
T Consensus 49 ~q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 49 NEHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 34557777876669999999999999 899999999999999999975322222 4778888776554
No 413
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=93.24 E-value=0.037 Score=41.68 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=38.9
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
+..|+..|...++.|..+||+.++...+..+..+.++|+.|+..|+|.+..
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 444566665556999999999999300006889999999999999999753
No 414
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.20 E-value=0.078 Score=41.41 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
.++|++.+.+..- . ++ |+++||+.+++ ++..++++|..|...|+|.... . .|.|.+..
T Consensus 9 ~yAl~~L~~La~~----~-~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r-G-~GGy~Lar 66 (145)
T 1xd7_A 9 AVAIHILSLISMD----E-KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA-G-VPGASLKK 66 (145)
T ss_dssp HHHHHHHHHHHTC----S-CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS-S-SSSCEESS
T ss_pred HHHHHHHHHHHhC----C-CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec-C-CCCceecC
Confidence 3455555544321 2 25 99999999999 9999999999999999999752 3 66787643
No 415
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.11 E-value=0.066 Score=40.55 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=40.4
Q ss_pred HHhChhHHHHhCC-C-CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAG-K-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g-~-~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|+..|.+.+ | .|+.+||+.+++ ++..+.|.|+.|+..|+|.+.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 3556777777654 4 899999999999 999999999999999999974
No 416
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=93.03 E-value=0.1 Score=40.86 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=41.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|+..|.+.++.|..+||+++|+ .+..+.+.++.|...|++...
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 35567888887779999999999999 899999999999999999853
No 417
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.93 E-value=0.1 Score=40.54 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=40.7
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
+..|++.|.+.++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 7 d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4567888887779999999999999 89999999999999999985
No 418
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.87 E-value=0.087 Score=41.24 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=41.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..+||+.+|+ .+..+.+.++.|...|++..
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 45678888988778999999999999 99999999999999999985
No 419
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.84 E-value=0.094 Score=40.65 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=37.4
Q ss_pred ChhHHHH-hCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIA-KAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~-~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.++..|. ..++.|..+||+.+++ ++..+.+.++.|+..|+|...
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3455553 2358999999999999 899999999999999999975
No 420
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=92.71 E-value=0.041 Score=44.89 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=51.6
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCcceeeeccC--C---Ccceecchhch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSS--G---ERLYGLTPVSK 107 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~---~~~y~~t~~~~ 107 (357)
.+|.--.++.|+..|.+ ++.|+.+|++.++ + ++..+++.|+.|...|+|..+.+. . ...|++++.+.
T Consensus 18 ~~La~P~Rl~il~~L~~-~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG-RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp HHTTSHHHHHHHHHTTT-SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred HHhCCHHHHHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 45555678888899986 5999999999996 8 788999999999999999865321 1 23577766543
No 421
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=92.57 E-value=0.053 Score=43.96 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=48.4
Q ss_pred HHhChhHHHHhCCC---CCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCC---cceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGK---LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE---RLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~---~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 110 (357)
.++.|+..|...++ .|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.+..++
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 35557888877543 899999999999 89999999999999999997532112 2366777766544
No 422
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.51 E-value=0.12 Score=40.98 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=41.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..|||+++|+ .+..+.+.++.|...|++..
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 34567888888779999999999999 89999999999999999985
No 423
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=92.27 E-value=0.062 Score=38.98 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=40.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.++.|+..|-+.|+.|+.||++.++...+..+.-+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 345677777766699999999999851111467899999999999999975
No 424
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=92.02 E-value=0.46 Score=35.46 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=53.3
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhC--------cCCCCCc-chHHHHHHHHhcCcceeeeccC-C---Ccceecc
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ--------AQNVKAP-MMLDRMLRLLVSHRVLECSVSS-G---ERLYGLT 103 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~--------~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~-~---~~~y~~t 103 (357)
++....++-|+..|.. +|.+..+|++.+. + .+ ..+.+.|+-|+..|+|...... + ...|++|
T Consensus 9 ~~~~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT 83 (118)
T 2esh_A 9 FRGWWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRIT 83 (118)
T ss_dssp HHHHHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEEC
T ss_pred cccchHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEC
Confidence 3455566777788877 5999999999983 5 78 8999999999999999876422 1 2358999
Q ss_pred hhchhhhc
Q 018366 104 PVSKYFVS 111 (357)
Q Consensus 104 ~~~~~l~~ 111 (357)
+.+...+.
T Consensus 84 ~~G~~~l~ 91 (118)
T 2esh_A 84 PQGKLYLR 91 (118)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 98875553
No 425
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.96 E-value=0.12 Score=40.45 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=41.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 34567888887779999999999999 89999999999999999984
No 426
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=91.94 E-value=0.035 Score=47.13 Aligned_cols=68 Identities=6% Similarity=0.127 Sum_probs=52.4
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC------Ccceecchhch
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG------ERLYGLTPVSK 107 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~------~~~y~~t~~~~ 107 (357)
..+|..-.++.|+..|.. ||.|..+||+.+|+ .+..+.+.|+.|...|+|......+ ...|++++.+.
T Consensus 6 lkaL~~~~R~~IL~~L~~-g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC-MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT-TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 345555667778888886 69999999999999 8999999999999999999732221 12477766554
No 427
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=91.85 E-value=0.14 Score=40.18 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=41.1
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 34567888888779999999999999 89999999999999999995
No 428
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=91.80 E-value=0.14 Score=42.91 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 53 AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 53 ~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
.++.+..+||+.+++ .+..+.+.++.|+..|+|... ....+.+|+.+..+..
T Consensus 18 ~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLVS 69 (214)
T ss_dssp CSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHH
T ss_pred CCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHHH
Confidence 458999999999999 899999999999999999974 2467888888875553
No 429
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=91.65 E-value=0.16 Score=39.84 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=41.3
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.+.++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 45568888888779999999999999 89999999999999999985
No 430
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=91.63 E-value=0.18 Score=40.51 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=41.4
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|+..|.++++.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 45568888888778999999999999 89999999999999999984
No 431
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.62 E-value=0.15 Score=37.09 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 53 AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 53 ~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.++.|..+||+.+|+ ++..+.+.|+.|+..|++...
T Consensus 34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 458999999999999 899999999999999999975
No 432
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=91.59 E-value=0.17 Score=40.71 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=42.0
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
..+..|+..|.+.+..|..|||+++|+ .+..+.+.++.|...|++..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 355678888888779999999999999 89999999999999999984
No 433
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=91.52 E-value=0.14 Score=34.57 Aligned_cols=55 Identities=13% Similarity=0.264 Sum_probs=45.2
Q ss_pred HHhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 42 IQLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 42 ~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
.+-.|++.|.+.| |++..+||+++|+ +..-+...+..|-..|.|..- ..-.|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP---kRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT---SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC---CCceeeCC
Confidence 3556778888765 9999999999999 899999999999999999852 34567654
No 434
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=91.51 E-value=0.16 Score=40.45 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=41.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
.+..|++.|.++++.|..+||+++|+ .+..+.+-++.|...|++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 45678899998889999999999999 89999999999999999984
No 435
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.44 E-value=0.22 Score=35.43 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=38.9
Q ss_pred HhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++.|+..|... .+++..+||+++++ +..-+.+.|+.|+..|+|.+.
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34566777753 37999999999999 899999999999999999954
No 436
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=91.40 E-value=0.3 Score=38.20 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=50.8
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhC-cCCCCCcchHHHHHHHHhcCcceeeeccC----C----Ccceecchhchhhh
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSS----G----ERLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~----~----~~~y~~t~~~~~l~ 110 (357)
.+..|+..|... +..|+++|++.++ + .+.-+.+.|+.|+..|+|...... + ...|++|+.+...+
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 566677777553 2579999999988 8 889999999999999999964221 1 12699999998665
Q ss_pred c
Q 018366 111 S 111 (357)
Q Consensus 111 ~ 111 (357)
.
T Consensus 106 ~ 106 (151)
T 3u1d_A 106 R 106 (151)
T ss_dssp H
T ss_pred H
Confidence 4
No 437
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.32 E-value=0.23 Score=40.80 Aligned_cols=51 Identities=8% Similarity=0.215 Sum_probs=44.7
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++....+..|+..|.+ |+.|..+||+.+|+ .+..+.+.++.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~-~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3445667778889985 69999999999999 899999999999999999975
No 438
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=91.30 E-value=0.16 Score=39.11 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=39.8
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
+..|+..|..+++.|..+||+.+|+ .+..+.+.++.|...|++..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 4557777877678999999999999 89999999999999999984
No 439
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=91.15 E-value=0.16 Score=38.72 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..|..+||+++++ .+.-+.+.++.|+..|+|...
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999974
No 440
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=90.60 E-value=0.24 Score=38.12 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=40.7
Q ss_pred HHhChhHHHHh-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAK-AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|+..|.+ .++.|..+|++.++.+.+.++.-+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 46667778876 4699999999999821011788999999999999999975
No 441
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=90.21 E-value=0.24 Score=41.79 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=43.8
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
+.|..++|+++++ .+..+++.++.|+..|++.+...+....+.+|+.+..+..
T Consensus 27 ~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 27 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 79 (230)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence 6899999999999 9999999999999999999742222456888888876664
No 442
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.17 E-value=0.23 Score=42.60 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=50.4
Q ss_pred HHHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
..++.++..|...+ +.|..+||+.+++ ++..+.++++-|+..|+|.+...++++ ...+|+.+..++
T Consensus 158 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 158 FVEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 34556778887653 4899999999999 999999999999999999986433333 355666666544
No 443
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=90.11 E-value=0.27 Score=33.30 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=36.0
Q ss_pred hHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 47 FEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 47 fd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++.|..++..|+.+||.++|+ ...-+.|.|..|...|.|...
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 345666445999999999999 888999999999999999975
No 444
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=90.01 E-value=0.25 Score=40.57 Aligned_cols=39 Identities=28% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 50 IAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 50 L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+.+.| |.|..|||+++|+ ....+.+.|+.|+..|++...
T Consensus 18 ~~~~g~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 18 IEKNGYPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHSSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHhCCCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 34434 8999999999999 666899999999999999963
No 445
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=89.92 E-value=0.56 Score=40.75 Aligned_cols=98 Identities=13% Similarity=-0.023 Sum_probs=68.6
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCCC----CCCceEEEcCCCC----CCC--C-CCEEEecccc
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFD----SVP--E-GDAILMKWIL 262 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~----~~p--~-~D~i~~~~~l 262 (357)
...+||+=+|+|.++.+.++. .-+++.+|. +..++..++ ..+++++..|.+. ..| . .|+|++==-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 456899999999999999984 357888887 666655554 2579999999655 112 2 3999874433
Q ss_pred ccCChhHHHHHHHHHHHh--CCCCCEEEEEeeccCC
Q 018366 263 HCWDDDHCLRILKNCYKA--IPDNGKVIVMNSIVPE 296 (357)
Q Consensus 263 h~~~~~~~~~~L~~~~~~--LkpgG~l~i~e~~~~~ 296 (357)
.. ..+..++++.+.+. +.|+|.++++-++...
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNK 203 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESSH
T ss_pred CC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccch
Confidence 32 13556667666653 4689999998887643
No 446
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=89.82 E-value=0.46 Score=36.18 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=42.7
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 39 QAAIQLGVFEIIAKA-GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+..
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEE
Confidence 456677788888754 389999999998 56 7788999999999999999764
No 447
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=89.75 E-value=0.21 Score=37.51 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.+..|+..|.+.||.|..+||+.++...+..+.-+.++|+-|+..|+|.+.
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677777776799999999999741111678899999999999999975
No 448
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=89.61 E-value=0.26 Score=38.38 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=40.3
Q ss_pred HhChhHHHHhC-----CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 43 QLGVFEIIAKA-----GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 43 ~lglfd~L~~~-----g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|... .+.++ ...+|+.+..++
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~-~~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM-AGADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee-CCCCCCeeEEEECHHHHHHH
Confidence 34455566542 25899999999999 999999999999999999542 22222 355666665444
No 449
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=89.45 E-value=0.72 Score=34.37 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHHHHHhChhHHHHhCCCCCHHHHHHHh------CcCCCCCcchHHHHHHHHhcCcceeeeccC-----CCcceecch
Q 018366 36 MATQAAIQLGVFEIIAKAGKLSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS-----GERLYGLTP 104 (357)
Q Consensus 36 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~ 104 (357)
+++.-.+++=|+..|.+ +|.+--+|++.+ ++ .+..+...|+-|+..|+|+..... ....|++|+
T Consensus 6 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR-RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred HHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 45555566667777877 599999999997 56 888999999999999999975321 123599999
Q ss_pred hchhhhc
Q 018366 105 VSKYFVS 111 (357)
Q Consensus 105 ~~~~l~~ 111 (357)
.+...+.
T Consensus 81 ~G~~~l~ 87 (117)
T 4esf_A 81 AGRQELE 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8885553
No 450
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=89.22 E-value=0.38 Score=35.91 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=55.2
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHhC------cCCCCCcchHHHHHHHHhcCcceeeeccC-C----Ccceecc
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVSS-G----ERLYGLT 103 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~----~~~y~~t 103 (357)
.+++.-.+++-|+..|.+ +|.+--+|++.+. + ++..+.+.|+-|+..|+|+..... + ...|++|
T Consensus 8 ~~l~~g~l~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 8 ERILHGLITLYILKELVK-RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHHhhHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 445666677778888887 5999999999886 6 678999999999999999975321 1 2369999
Q ss_pred hhchhhhc
Q 018366 104 PVSKYFVS 111 (357)
Q Consensus 104 ~~~~~l~~ 111 (357)
+.+...+.
T Consensus 83 ~~G~~~l~ 90 (117)
T 3elk_A 83 DAGKKFLC 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99886554
No 451
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=88.96 E-value=1.8 Score=38.26 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=56.2
Q ss_pred CceEEEEcCCc--chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCC-CCCCCCEEEeccccccCChhHH
Q 018366 195 VERLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFD-SVPEGDAILMKWILHCWDDDHC 270 (357)
Q Consensus 195 ~~~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~D~i~~~~~lh~~~~~~~ 270 (357)
..+|.=||+|. +.++..+.+......++++|. ++.++.+.+..-+.-...|..+ .....|+|++.- +....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999884 345666666544337888997 5555554433222222233322 233349988753 44566
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 018366 271 LRILKNCYKAIPDNGKVIVM 290 (357)
Q Consensus 271 ~~~L~~~~~~LkpgG~l~i~ 290 (357)
.++++++...++||..++-+
T Consensus 108 ~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHhhccCCCcEEEEC
Confidence 78899999999998765543
No 452
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=88.33 E-value=0.25 Score=46.70 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=50.0
Q ss_pred HHHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 41 AIQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 41 a~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
.-+..|+..|.+. ++.|..+||+++++ ++..+.|+++-|+..|+|.+.....++ ...+|+.+..++
T Consensus 404 ~~q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 404 YEEIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 3455688888876 68999999999999 999999999999999999986432222 244555554433
No 453
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=88.17 E-value=0.46 Score=40.89 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=37.3
Q ss_pred hHHHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeec-hHHHHhCC
Q 018366 181 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP 234 (357)
Q Consensus 181 ~~~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 234 (357)
.++.++.... .+...|||..||+|..+.+..+. +-+++++|+ +..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4555666543 35679999999999999988876 457888888 66666554
No 454
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=88.17 E-value=1.2 Score=38.09 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=62.8
Q ss_pred CceEEEEcCCcchHHHHHHhh-------CCCCeEEEeec----hHH------------------------HH-------h
Q 018366 195 VERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL----PHV------------------------VQ-------D 232 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~-------~ 232 (357)
+..|+|+|+-.|..+..++.. .++-++.++|. |+. +. .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 459999999999887776542 45678888883 321 00 0
Q ss_pred CCC----CCCceEEEcCCCCCC-------CCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 018366 233 APS----YAGVEHVGGNMFDSV-------PEG--DAILMKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMN 291 (357)
Q Consensus 233 a~~----~~~v~~~~~D~~~~~-------p~~--D~i~~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e 291 (357)
.+. .++|+++.|++.+.+ |.. |++++=.= .+ +.....+..+...|+|||.|++-+
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D--~Y--~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD--LY--EPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC--CH--HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc--cc--chHHHHHHHHHHHhCCCcEEEEcC
Confidence 011 157899999987622 332 77665431 12 455688999999999999999855
No 455
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=88.03 E-value=1.1 Score=33.27 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=54.1
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCcceeeeccC---C--Cccee
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS---G--ERLYG 101 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~---~--~~~y~ 101 (357)
.+++.-.+++=|+..|.+ +|.+--+|.+.+ ++ ++..+.+.|+-|+..|+|+..... + ...|+
T Consensus 6 ~~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~ 80 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYR 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEE
T ss_pred HHHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEE
Confidence 345556667777778887 599999999887 45 788999999999999999975321 1 23588
Q ss_pred cchhchhhhc
Q 018366 102 LTPVSKYFVS 111 (357)
Q Consensus 102 ~t~~~~~l~~ 111 (357)
+|+.+...+.
T Consensus 81 LT~~G~~~l~ 90 (116)
T 3f8b_A 81 LTEIGHENMR 90 (116)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9998875553
No 456
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=87.87 E-value=0.71 Score=35.81 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=44.8
Q ss_pred HHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeeccCC-Ccceec
Q 018366 40 AAIQLGVFEIIAKA-GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSSG-ERLYGL 102 (357)
Q Consensus 40 ~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~~y~~ 102 (357)
+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+....+ ...|..
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 86 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGDASSRFDF 86 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCCCceEEEC
Confidence 44556688888763 389999999999 55 7778999999999999999764322 234654
No 457
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=87.85 E-value=0.31 Score=35.26 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=38.6
Q ss_pred HHHHHHhChhH-HHHhCCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 38 TQAAIQLGVFE-IIAKAGKL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 38 l~~a~~lglfd-~L~~~g~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
+...++..|.+ .+..+... |..+||+.+++ .+.-+++-|+.|...|+|...
T Consensus 16 l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 16 VATHFRTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34444445555 33333255 99999999999 889999999999999999864
No 458
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=87.50 E-value=0.52 Score=34.54 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=50.2
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHh----CcCCCCCcchHHHHHHHHhcCcceeeeccCCC----cceecchhchhhh
Q 018366 39 QAAIQLGVFEIIAKAGKLSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECSVSSGE----RLYGLTPVSKYFV 110 (357)
Q Consensus 39 ~~a~~lglfd~L~~~g~~t~~~la~~~----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~----~~y~~t~~~~~l~ 110 (357)
.--.++-|+..|.+ +|.+--+|++.+ ++ ++..+.+.|+-|+..|+|.......+ ..|++|+.+...+
T Consensus 7 ~g~l~~~IL~~L~~-~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 7 ALLIEYLILAIVSK-HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHHH-SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 34456667777777 488888888775 67 88899999999999999997532112 2488998887555
Q ss_pred c
Q 018366 111 S 111 (357)
Q Consensus 111 ~ 111 (357)
.
T Consensus 82 ~ 82 (108)
T 3l7w_A 82 V 82 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 459
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=86.73 E-value=0.38 Score=36.93 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=32.1
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
..|.++||+++++ ++.-+.+.|+.|+..|++...
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999 999999999999999999974
No 460
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=86.64 E-value=0.83 Score=32.98 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=35.1
Q ss_pred HHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhc
Q 018366 39 QAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 85 (357)
Q Consensus 39 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~ 85 (357)
..+.++||+..|.. |+.|-.|||+.+|+ ....+.|.=++|..
T Consensus 43 ~l~~R~~l~~~L~~-ge~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 43 ALGTRVRIIEELLR-GEMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHHH-CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 45667999999998 47999999999999 88888888776643
No 461
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=86.37 E-value=1.8 Score=27.29 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=36.9
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchh
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPV 105 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 105 (357)
++|+.|+|+.+++ +-+..+.-|+-|.+.|-+.+. ..+|++.|-
T Consensus 18 GMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR----sSRYrlkph 60 (68)
T 3i71_A 18 GMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR----SSRYRLKPH 60 (68)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----CCEEEECC-
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh----ccccccCcc
Confidence 7999999999999 888889999999999999963 578887553
No 462
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=86.22 E-value=0.88 Score=35.03 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=45.9
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHhCcC-CCCCcchHHHHHHHHhcCcceeeeccC-CCcceec
Q 018366 39 QAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQ-NVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGL 102 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g~~t~~~la~~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~ 102 (357)
.+..+.-|++.|.+. ++.|++||.+.+.-. ...+..-+.|.|+.|+..|++.+.... +...|..
T Consensus 12 ~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~ 78 (139)
T 3mwm_A 12 ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRR 78 (139)
T ss_dssp HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEEC
T ss_pred cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEE
Confidence 356677788888764 389999999998421 011677899999999999999976422 2335654
No 463
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=86.21 E-value=1.1 Score=33.23 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=54.0
Q ss_pred HHHHHHHHHhChhHHHHhCCCCCHHHHHHHh------CcCCCCCcchHHHHHHHHhcCcceeeeccC-C----Ccceecc
Q 018366 35 PMATQAAIQLGVFEIIAKAGKLSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS-G----ERLYGLT 103 (357)
Q Consensus 35 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~----~~~y~~t 103 (357)
.+++.-.+++-|+..|.+ +|.+--+|++.+ ++ ++..+...|+-|+..|+|+..... + ...|++|
T Consensus 7 ~~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT 81 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQR-KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLT 81 (116)
T ss_dssp HHHHTTHHHHHHHHHHHH-SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEEC
T ss_pred HHHHhhhHHHHHHHHHhc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 345555566667777877 499999999998 46 788999999999999999975321 1 2359999
Q ss_pred hhchhhhc
Q 018366 104 PVSKYFVS 111 (357)
Q Consensus 104 ~~~~~l~~ 111 (357)
+.+...+.
T Consensus 82 ~~G~~~l~ 89 (116)
T 3hhh_A 82 SSGEAELA 89 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98875553
No 464
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=85.37 E-value=0.63 Score=36.16 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHHHHHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCcceeeeccC---C--Ccceecc
Q 018366 37 ATQAAIQLGVFEIIAKAGKLSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS---G--ERLYGLT 103 (357)
Q Consensus 37 ~l~~a~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~---~--~~~y~~t 103 (357)
++..-.++-|+..|.+ +|.+..+|++.+ ++ .+..+.+.|+-|+..|+|...... + ...|++|
T Consensus 37 ~~~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT 111 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRIT 111 (145)
T ss_dssp SGGGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEEC
T ss_pred HhcCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEEC
Confidence 3444566677777876 589999998887 46 888999999999999999875321 1 2358999
Q ss_pred hhchhhhc
Q 018366 104 PVSKYFVS 111 (357)
Q Consensus 104 ~~~~~l~~ 111 (357)
+.+..++.
T Consensus 112 ~~G~~~l~ 119 (145)
T 1xma_A 112 PEGIKYYK 119 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88875543
No 465
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=84.95 E-value=1.4 Score=34.42 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=46.1
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeeccCC-Ccceec
Q 018366 39 QAAIQLGVFEIIAKA-GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSSG-ERLYGL 102 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~~y~~ 102 (357)
.+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+....+ ...|..
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 366677789999764 389999999998 55 7778999999999999999764322 234654
No 466
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=84.93 E-value=0.92 Score=34.89 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=43.2
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceec
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGL 102 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~ 102 (357)
-.|.+.|. .|+.|..+||+++|+ ......-.|..|+..|++.++....-..+++
T Consensus 14 ~~ILE~Lk-~G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L 67 (165)
T 2vxz_A 14 RDILALLA-DGCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRVAFGNVALVCL 67 (165)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEEEETTEEEEES
T ss_pred HHHHHHHH-hCCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEEEEccEEEEEe
Confidence 34677788 479999999999999 8889999999999999999875432333443
No 467
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=84.80 E-value=4.8 Score=34.76 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=52.7
Q ss_pred ceEEEEcCCc-c-hHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhHHHH
Q 018366 196 ERLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDHCLR 272 (357)
Q Consensus 196 ~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~~~~ 272 (357)
.+|.=||+|. | .++..+.+..++..++++|. ++..+.+.+.........|..+.....|+|++.- ++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 4788899885 3 45556666655667888887 4444433222111112233322222349988743 5556678
Q ss_pred HHHHHHHh-CCCCCEEEE
Q 018366 273 ILKNCYKA-IPDNGKVIV 289 (357)
Q Consensus 273 ~L~~~~~~-LkpgG~l~i 289 (357)
+++++... ++|+..++.
T Consensus 82 v~~~l~~~~l~~~~ivi~ 99 (290)
T 3b1f_A 82 FIKILADLDLKEDVIITD 99 (290)
T ss_dssp HHHHHHTSCCCTTCEEEC
T ss_pred HHHHHHhcCCCCCCEEEE
Confidence 88888888 888765553
No 468
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=84.63 E-value=0.99 Score=34.54 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=44.5
Q ss_pred HHHHhChhHHHHhC--CCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeeccC-CCcceec
Q 018366 40 AAIQLGVFEIIAKA--GKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSS-GERLYGL 102 (357)
Q Consensus 40 ~a~~lglfd~L~~~--g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~y~~ 102 (357)
+..+.-|++.|... ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.... +...|..
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 34556688888753 489999999998 55 777899999999999999976322 2235754
No 469
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=84.59 E-value=1.2 Score=35.94 Aligned_cols=64 Identities=11% Similarity=0.306 Sum_probs=48.6
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHh--------CcCCCCCcchHHHHHHHHhcCcceeeeccC-----CCcceecchhchh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSS-----GERLYGLTPVSKY 108 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~~~~ 108 (357)
+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+-|+..|+|+..... ....|++|+.+..
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 35557777877 599999999998 45 788999999999999999965321 1235999999874
Q ss_pred hh
Q 018366 109 FV 110 (357)
Q Consensus 109 l~ 110 (357)
.+
T Consensus 78 ~l 79 (179)
T 1yg2_A 78 AL 79 (179)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 470
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=84.33 E-value=2.3 Score=38.73 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCcchHHHHHHhhC-------CCCeEEEeech
Q 018366 193 QNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDLP 227 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~~ 227 (357)
+.+..|+|+|+|+|.++..+++.. ..+++..++..
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~S 120 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEIN 120 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCC
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecC
Confidence 345689999999999998887642 34578888873
No 471
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=84.23 E-value=4.5 Score=35.08 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=48.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhCCC----CeEEEeechHHHHhCCCCCCceEEEcCCCCCCCCCCEEEeccccccCChhH
Q 018366 194 NVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLPHVVQDAPSYAGVEHVGGNMFDSVPEGDAILMKWILHCWDDDH 269 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~i~~~~~lh~~~~~~ 269 (357)
++..|+=+|||.|.....+.+.+|+ ++.+.+|...-....+..+ ++.+....+ ++.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~----------------NV~li~~fv----de~ 119 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLR----------------DVTLVTRFV----DEE 119 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCT----------------TEEEEECCC----CHH
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCC----------------cEEEEeccC----CHH
Confidence 3569999999999999999988775 5788888311000111111 344433322 232
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeccC
Q 018366 270 CLRILKNCYKAIPDNGKVIVMNSIVP 295 (357)
Q Consensus 270 ~~~~L~~~~~~LkpgG~l~i~e~~~~ 295 (357)
-+++.++.++...+|+|.|.-..
T Consensus 120 ---dl~~l~~~~~~~~iLLISDIRS~ 142 (307)
T 3mag_A 120 ---YLRSIKKQLHPSKIILISDVRSK 142 (307)
T ss_dssp ---HHHHHHHHHTTSCEEEEECCCC-
T ss_pred ---HHHHHHHhccCCCEEEEEEecCC
Confidence 25666666777789999887554
No 472
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=84.07 E-value=0.82 Score=28.83 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=38.9
Q ss_pred HhChhHHHHhCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceee
Q 018366 43 QLGVFEIIAKAG-KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 91 (357)
Q Consensus 43 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 91 (357)
|-.|++.+..+| -..++.+|+++|+ .++-+-..|+.|...|++..
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 445677777765 6899999999999 89999999999999999975
No 473
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=84.03 E-value=0.84 Score=30.03 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=39.1
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcch-HHHHHHHHhcCcceeee
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECS 92 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~ 92 (357)
+-.|++.|...||.++=.||+++|+ .... +.+.|..|...|+|..+
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGl----ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGM----RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCc----chhhhcCHHHHHHHHccCcCCC
Confidence 4457888888889999999999999 4444 89999999999999764
No 474
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=83.90 E-value=0.95 Score=40.28 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=44.7
Q ss_pred HhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecch
Q 018366 43 QLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTP 104 (357)
Q Consensus 43 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 104 (357)
+..|++.|.++++.|.++||+.+++ .+..++|-++.|...|++.... .+..|++.+
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~--~g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV--PGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE--TTTEEECSS
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe--cCCCcEEee
Confidence 3456777876568999999999999 9999999999999999987542 234677654
No 475
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=83.81 E-value=1.4 Score=35.66 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=45.6
Q ss_pred HHHHHhChhHHHHhC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcc-eeeeccCCCcceecch
Q 018366 39 QAAIQLGVFEIIAKA-GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSSGERLYGLTP 104 (357)
Q Consensus 39 ~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~y~~t~ 104 (357)
..-....|++.|.+. ++.|..+||+.+++ .++-+.|-++.|...|+ +... .+.|.+.+
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~----~~Gy~l~~ 78 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT----PRGYVLAG 78 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE----TTEEECCT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----CCEEEECC
Confidence 345566788888853 37999999999999 89999999999999999 7642 34566554
No 476
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=83.39 E-value=0.95 Score=38.71 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=49.1
Q ss_pred HHhChhHHHHhC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCc---ceecchhchhhh
Q 018366 42 IQLGVFEIIAKA--GKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGER---LYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 110 (357)
-+..++..|.+. ++.|..+||+.+++ ++..+.++++-|+..|+|.+.....+. ...+|+.+..+.
T Consensus 35 ~q~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 345577777653 37899999999999 899999999999999999986433222 355777766544
No 477
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=83.29 E-value=0.82 Score=38.49 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=40.0
Q ss_pred CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 57 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 57 t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
+..+||+.+++ ++..+.+.++.|+..|++.+. ....+.+|+.+..+..
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA---GDRHLELTEKGRALAI 73 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHHH
Confidence 44999999999 899999999999999999974 2357888888775543
No 478
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=83.02 E-value=0.69 Score=33.53 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=35.4
Q ss_pred ChhHHHHhCCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 45 GVFEIIAKAGKL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 45 glfd~L~~~g~~-t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.|+..|..++.. |..+||+.+|+ .+.-+++-|+.|+..|+|...
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 334444443345 99999999999 899999999999999999974
No 479
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=82.77 E-value=3.8 Score=36.73 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=70.4
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCC-eEEEeec-hHHHHhCCC-CCCceEEEcCCCCC----CC--CCCEEEeccccccC
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPS-YAGVEHVGGNMFDS----VP--EGDAILMKWILHCW 265 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~p--~~D~i~~~~~lh~~ 265 (357)
..+|+|+-||.|.+...+....-+. .+..+|. +..++..+. .+...++.+|+.+- ++ ..|+++..--...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3589999999999999999875322 3566676 555554443 24556788888762 22 23999887665554
Q ss_pred Chh-------H-HHHHHHH---HHHhCC--CCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018366 266 DDD-------H-CLRILKN---CYKAIP--DNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTEL 332 (357)
Q Consensus 266 ~~~-------~-~~~~L~~---~~~~Lk--pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 332 (357)
+.. + .-.++.+ +.+.++ | ++++.|.+..- . .+ .+.+.+.+.
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P--~~~~~ENV~~l-------------~---------~~--~~~~~i~~~ 135 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGF-------------E---------VS--STRDLLIQT 135 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCC--SEEEEEEETTG-------------G---------GS--HHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCC--CEEEEeCCccc-------------c---------CH--HHHHHHHHH
Confidence 321 1 1123333 334445 5 35566765421 0 01 135677888
Q ss_pred HHHcCCceeE
Q 018366 333 AIAAGFKHIN 342 (357)
Q Consensus 333 l~~aGf~~~~ 342 (357)
|++.||.+..
T Consensus 136 l~~~GY~v~~ 145 (343)
T 1g55_A 136 IENCGFQYQE 145 (343)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCeeEE
Confidence 8999988654
No 480
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=82.52 E-value=1.8 Score=27.84 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=28.2
Q ss_pred hHHHHhCCCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcce
Q 018366 47 FEIIAKAGKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVL 89 (357)
Q Consensus 47 fd~L~~~g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l 89 (357)
...+...++.|++||++.+ ++ ...-+.|.|+ .+|++
T Consensus 11 ~~ll~~~~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 11 REIITSNEIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence 3445555689999999999 88 7888888888 56777
No 481
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=82.17 E-value=4.6 Score=35.93 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=69.3
Q ss_pred CceEEEEcCCcchHHHHHHhhCCCCe-EEEeec-hHHHHhCCCC-CCceEEEcCCCCC----CCCCCEEEeccccccCC-
Q 018366 195 VERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-AGVEHVGGNMFDS----VPEGDAILMKWILHCWD- 266 (357)
Q Consensus 195 ~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~----~p~~D~i~~~~~lh~~~- 266 (357)
..+++|+-||.|.+...+.... .+ +..+|+ +..++..+.. +... .+|+.+- ++..|+++..--...++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 3689999999999999998864 44 455666 5544433321 2221 5676651 33348888765444443
Q ss_pred --------hhH--HHHHHHHHHHhCCCCCEEEEEeeccCCCCCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018366 267 --------DDH--CLRILKNCYKAIPDNGKVIVMNSIVPEIPEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAA 336 (357)
Q Consensus 267 --------~~~--~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 336 (357)
|+. ...-+-++.+.++| +++++|.+..- .. ...-.+.+.+.+.|++.
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P--~~~~~ENV~gl-------------~~--------~~~~~~~~~i~~~l~~~ 143 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP--KVVFMENVKNF-------------AS--------HDNGNTLEVVKNTMNEL 143 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC--SEEEEEEEGGG-------------GT--------GGGGHHHHHHHHHHHHT
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC--cEEEEeCcHHH-------------Hh--------ccccHHHHHHHHHHHhC
Confidence 111 11122233444577 47777776421 00 00112457788888999
Q ss_pred CCceeEE
Q 018366 337 GFKHINF 343 (357)
Q Consensus 337 Gf~~~~~ 343 (357)
||.+...
T Consensus 144 GY~v~~~ 150 (327)
T 2c7p_A 144 DYSFHAK 150 (327)
T ss_dssp TBCCEEE
T ss_pred CCEEEEE
Confidence 9886543
No 482
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=81.97 E-value=1.8 Score=36.04 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeec
Q 018366 53 AGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 93 (357)
Q Consensus 53 ~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 93 (357)
.|++|+.+||+.+|+ ........|+.++..|++..+.
T Consensus 166 ~g~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 166 KGSLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEEC
Confidence 358999999999999 8889999999999999999763
No 483
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=81.83 E-value=3 Score=41.14 Aligned_cols=96 Identities=13% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCceEEEEcCCcchHHHHHHhhC-------CC-----CeEEEeec----hHHHHhCCC---------------C------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKY-------PQ-----IKAVNFDL----PHVVQDAPS---------------Y------ 236 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~a~~---------------~------ 236 (357)
+.-+|+|+|-|+|.......+.+ |+ ++++.++. ++.+..+-. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34699999999998766655542 22 45677764 233321100 0
Q ss_pred --------CC--ceEEEcCCCC---CCC----CC-CEEEeccccccCC-hhHHHHHHHHHHHhCCCCCEEEE
Q 018366 237 --------AG--VEHVGGNMFD---SVP----EG-DAILMKWILHCWD-DDHCLRILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 237 --------~~--v~~~~~D~~~---~~p----~~-D~i~~~~~lh~~~-~~~~~~~L~~~~~~LkpgG~l~i 289 (357)
++ +++..+|+.+ .++ .. |++++-..-..-. +-...++++.+++.++|||.+..
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 11 3455577655 121 12 8887633211111 11135789999999999987764
No 484
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=81.07 E-value=5.8 Score=36.03 Aligned_cols=94 Identities=10% Similarity=0.101 Sum_probs=60.2
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCe-EEEeec-hHHHHhCCC-CCCceEEEcCCCCC----C------CCC-CEEEeccc
Q 018366 196 ERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPS-YAGVEHVGGNMFDS----V------PEG-DAILMKWI 261 (357)
Q Consensus 196 ~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~------p~~-D~i~~~~~ 261 (357)
.+++|+-||.|.++..+.+.. .. +..+|+ +..++..+. .+...++.+|+.+- + +.. |+|+..--
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 589999999999999998875 44 346676 555544433 35678888888762 1 123 99987766
Q ss_pred cccCC--------hhHHHHHHH---HHHHhCCCCCEEEEEeecc
Q 018366 262 LHCWD--------DDHCLRILK---NCYKAIPDNGKVIVMNSIV 294 (357)
Q Consensus 262 lh~~~--------~~~~~~~L~---~~~~~LkpgG~l~i~e~~~ 294 (357)
...|+ |+. -.++. ++.+.++| +++++|.+.
T Consensus 81 CQ~fS~ag~~~~~d~r-~~L~~~~~~~v~~~~P--~~~v~ENV~ 121 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSR-NQLYMHFYRLVSELQP--LFFLAENVP 121 (376)
T ss_dssp CCTTC-------CHHH-HHHHHHHHHHHHHHCC--SEEEEEECT
T ss_pred CCCcccccCCCCCCch-HHHHHHHHHHHHHhCC--CEEEEecch
Confidence 55554 222 12333 34445577 677778764
No 485
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=81.01 E-value=2.3 Score=39.14 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=32.5
Q ss_pred CCCceEEEEcCCcchHHHHHH-hhCCC-CeEEEeec-hHHHHhC
Q 018366 193 QNVERLVDVGGGFGVTLSMIT-SKYPQ-IKAVNFDL-PHVVQDA 233 (357)
Q Consensus 193 ~~~~~vLDiG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a 233 (357)
++...|+|||++.|.++..++ +..++ .+++.++. |...+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L 268 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL 268 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 567899999999999999988 56665 68999987 6555443
No 486
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.82 E-value=0.95 Score=32.29 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=39.4
Q ss_pred HHhChhHHHHhCC--CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 42 IQLGVFEIIAKAG--KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 42 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
-|.-|+..+...| +++..+|..++++ +...+.+.|+.|+..+++..+
T Consensus 38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 3445666666644 7999999999999 899999999999999999975
No 487
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=80.54 E-value=2.7 Score=31.49 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHh-----CcCCCCCcchHHHHHHHHhcCcceeeeccCC----Ccceecc
Q 018366 33 VLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSSG----ERLYGLT 103 (357)
Q Consensus 33 ~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~----~~~y~~t 103 (357)
+..++++-.+++=|+..|. . |.+--+|.+.+ ++ ++..+...|+-|+..|+|....... ...|++|
T Consensus 13 ~~~~l~~g~l~~~IL~lL~-~-p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT 86 (123)
T 3ri2_A 13 MVLELRRGTLVMLVLSQLR-E-PAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTT 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTT-S-CEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEEC
T ss_pred HHHHHHhCcHHHHHHHHHc-C-CCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEEC
Confidence 4555666667777788887 3 88888888885 56 7889999999999999999753211 2368899
Q ss_pred hhchhhhc
Q 018366 104 PVSKYFVS 111 (357)
Q Consensus 104 ~~~~~l~~ 111 (357)
+.+...+.
T Consensus 87 ~~Gr~~l~ 94 (123)
T 3ri2_A 87 DEGLRVLR 94 (123)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98875553
No 488
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=80.54 E-value=4.4 Score=31.62 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=61.9
Q ss_pred HHHHhhcccCCCCceEEEEcCCcchHHHHHHhhCCCCeEEEeechHH--HHhCCCCCCceEEEcCCCCCCCC-----C-C
Q 018366 183 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV--VQDAPSYAGVEHVGGNMFDSVPE-----G-D 254 (357)
Q Consensus 183 ~~i~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~--~~~a~~~~~v~~~~~D~~~~~p~-----~-D 254 (357)
...+....+. ..-|+|+|=|+|..=.++.+.+|+-.+.++|..-. -.... +.=.++.||+.+-.|. + .
T Consensus 31 ~~a~~~v~~~--~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P--~~e~~ilGdi~~tL~~~~~r~g~~ 106 (174)
T 3iht_A 31 EHAIAQTAGL--SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTP--PEAQLILGDIRETLPATLERFGAT 106 (174)
T ss_dssp HHHHHHTTTC--CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCC--CGGGEEESCHHHHHHHHHHHHCSC
T ss_pred HHHHHHhcCC--CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCC--chHheecccHHHHHHHHHHhcCCc
Confidence 3445555533 34799999999999999999999999999995110 00000 2235777887663222 2 3
Q ss_pred EEEeccccccCChhHHHHHH----HHHHHhCCCCCEEEEEeec
Q 018366 255 AILMKWILHCWDDDHCLRIL----KNCYKAIPDNGKVIVMNSI 293 (357)
Q Consensus 255 ~i~~~~~lh~~~~~~~~~~L----~~~~~~LkpgG~l~i~e~~ 293 (357)
+.+...=+-.-..+.-.... .-+..+|.|||.++.-.+.
T Consensus 107 a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 107 ASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp EEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 33332222111212222222 2344678899988876654
No 489
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=79.93 E-value=1.7 Score=40.20 Aligned_cols=51 Identities=16% Similarity=0.330 Sum_probs=44.0
Q ss_pred HHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 38 TQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 38 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
++..-+..|++.|.+.++.|..|||+.+++ .+.-+.++++.|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 444445558888888779999999999999 899999999999999999975
No 490
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=79.87 E-value=1.8 Score=42.86 Aligned_cols=118 Identities=13% Similarity=0.171 Sum_probs=67.6
Q ss_pred CCceEEEEcCCcchHHHHHHhhC-------CC-----CeEEEeec-h---HHHHhCC-C---------------------
Q 018366 194 NVERLVDVGGGFGVTLSMITSKY-------PQ-----IKAVNFDL-P---HVVQDAP-S--------------------- 235 (357)
Q Consensus 194 ~~~~vLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~-~--------------------- 235 (357)
+..+|+|+|-|+|.......+.+ |+ ++++.++. | +.+..+- .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999998777665542 32 45677764 2 2222110 0
Q ss_pred -------CC--CceEEEcCCCC---CCC---CC--CEEEeccccccC-ChhHHHHHHHHHHHhCCCCCEEEEEeeccCCC
Q 018366 236 -------YA--GVEHVGGNMFD---SVP---EG--DAILMKWILHCW-DDDHCLRILKNCYKAIPDNGKVIVMNSIVPEI 297 (357)
Q Consensus 236 -------~~--~v~~~~~D~~~---~~p---~~--D~i~~~~~lh~~-~~~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~ 297 (357)
.+ .+++..||+.+ .++ .. |++++-..--.. ++-....+++.+.+.++|||.+.-..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------ 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC------
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 01 24566777765 222 12 777763311110 11112577888888888888765411
Q ss_pred CCCCchhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCceeEEe
Q 018366 298 PEVSSSARETSLLDVLLMTRDGGGRERTKKEFTELAIAAGFKHINFA 344 (357)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 344 (357)
.....++.|.++||.+.+..
T Consensus 212 ---------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ---------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ---------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEecc
Confidence 12356788889999876654
No 491
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=79.82 E-value=2.5 Score=35.32 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 55 KLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 55 ~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
..+..+||+.+++ .+..+.+.++.|+..|++.+. ....+.+|+.+..+..
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVA---SDRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---CCCCeEECHHHHHHHH
Confidence 3456999999999 899999999999999999974 2466889988875543
No 492
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=79.28 E-value=1.7 Score=32.20 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=48.5
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhC------cCCCCCcchHHHHHHHHhcCcceeeeccC-C----Ccceecchhchhhh
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVSS-G----ERLYGLTPVSKYFV 110 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~----~~~y~~t~~~~~l~ 110 (357)
+++-|+..|.+ +|.+--+|++.+. + ++..+...|+-|+..|+|...... + ...|++|+.+...+
T Consensus 10 l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 10 LEGCILYIISQ-EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHHHHHHH-SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 34456667776 4899999999885 5 788999999999999999975321 1 12588999887555
Q ss_pred c
Q 018366 111 S 111 (357)
Q Consensus 111 ~ 111 (357)
.
T Consensus 85 ~ 85 (115)
T 4esb_A 85 E 85 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 493
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=79.21 E-value=8.2 Score=33.07 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=50.5
Q ss_pred eEEEEcCCc-c-hHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCC-CCCEEEeccccccCChhHHHH
Q 018366 197 RLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVP-EGDAILMKWILHCWDDDHCLR 272 (357)
Q Consensus 197 ~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p-~~D~i~~~~~lh~~~~~~~~~ 272 (357)
+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......|..+... ..|+|++. .+......
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 77 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHHH
Confidence 678889874 3 33444444332236888887 5444443322211111223322233 44988874 35566678
Q ss_pred HHHHHHHhCCCCCEEEE
Q 018366 273 ILKNCYKAIPDNGKVIV 289 (357)
Q Consensus 273 ~L~~~~~~LkpgG~l~i 289 (357)
+++++...++|+..++.
T Consensus 78 v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred HHHHHHhhCCCCcEEEE
Confidence 89999899999875554
No 494
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=78.97 E-value=1.1 Score=40.90 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCC------Ccceecchhc
Q 018366 33 VLPMATQAAIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSG------ERLYGLTPVS 106 (357)
Q Consensus 33 ~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~------~~~y~~t~~~ 106 (357)
...++++..-+..|++.|. .++.|..|||+.+++ .+.-+.++++.|...|++.+..... ...|++++..
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~ 86 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-KSPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNC 86 (380)
T ss_dssp ----------CCCSHHHHH-HSCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGG
T ss_pred cCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCC
Confidence 3455677777788999999 789999999999999 8999999999999999999753210 2236666654
Q ss_pred h
Q 018366 107 K 107 (357)
Q Consensus 107 ~ 107 (357)
.
T Consensus 87 ~ 87 (380)
T 2hoe_A 87 A 87 (380)
T ss_dssp C
T ss_pred C
Confidence 4
No 495
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=78.53 E-value=3.5 Score=34.66 Aligned_cols=52 Identities=8% Similarity=0.106 Sum_probs=42.7
Q ss_pred hChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecc
Q 018366 44 LGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLT 103 (357)
Q Consensus 44 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t 103 (357)
.-|.-.|.. |+.|.++||+.+|+ ++.-++..|.-|...|+|... .++...+.
T Consensus 168 ~~l~~~l~~-~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~~---~~~~~~~~ 219 (232)
T 2qlz_A 168 AILHYLLLN-GRATVEELSDRLNL----KEREVREKISEMARFVPVKII---NDNTVVLD 219 (232)
T ss_dssp HHHHHHHHS-SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEEE---TTTEEEEC
T ss_pred HHHHHHHhc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEEe---cCCeEEec
Confidence 456667776 59999999999999 999999999999999999852 35666543
No 496
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=78.22 E-value=1.5 Score=32.74 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=40.2
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCccee
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYG 101 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~ 101 (357)
....|.+.+.. .|.++.++|+.+++ ++..+..||+.|+..|.+.... .+.|.
T Consensus 8 l~~~i~~~~~~-~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i~---~~~~~ 59 (121)
T 2pjp_A 8 IWQKAEPLFGD-EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAIV---KDRYY 59 (121)
T ss_dssp HHHHHGGGCSS-SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE---TTEEE
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec---CCceE
Confidence 33445555554 37799999999999 8999999999999999999652 45553
No 497
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=77.98 E-value=6.1 Score=35.34 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=56.8
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCC-eEEEeec-hHHHHhCCCCCCceEEEcC------CCCC----CCCC-CEEE
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSYAGVEHVGGN------MFDS----VPEG-DAIL 257 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~v~~~~~D------~~~~----~p~~-D~i~ 257 (357)
..+..+||-+|+|. |..+..+++.. +. ++++.|. ++-.+.+++..--.++..+ +.+. .+.+ |+|+
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 56678999999875 78888888876 45 7888875 4444544433211222211 1000 1123 8876
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEee
Q 018366 258 MKWILHCWDDDHCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 258 ~~~~lh~~~~~~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
-.- .. ...+....+.|+|||+++++-.
T Consensus 248 d~~-----g~---~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 248 ECT-----GA---EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp ECS-----CC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred ECC-----CC---hHHHHHHHHHhcCCCEEEEEec
Confidence 432 11 2457788899999999998754
No 498
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=77.47 E-value=0.47 Score=42.78 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeeeccCCCcceecchhchhhhc
Q 018366 42 IQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSSGERLYGLTPVSKYFVS 111 (357)
Q Consensus 42 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 111 (357)
-+..++..|...++.|..+||+.+++ ++.-++|.|+.|...|++... .....+|+.+..+..
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~----~~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS----KSGMTLTERGLEVYQ 82 (345)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE----ecceEEcHHHHHHHH
Confidence 34567777777679999999999999 999999999999999999842 233667777765554
No 499
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=77.17 E-value=2.4 Score=38.90 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=42.1
Q ss_pred HHHhChhHHHHhCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHhcCcceeee
Q 018366 41 AIQLGVFEIIAKAGKLSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 92 (357)
Q Consensus 41 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 92 (357)
.-+..|++.|.+.++.|..|||+.+++ .+.-+.++++.|...|++.+.
T Consensus 16 ~n~~~il~~l~~~~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 16 TNAGAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 334457888888789999999999999 899999999999999999874
No 500
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=77.12 E-value=4.5 Score=36.09 Aligned_cols=90 Identities=19% Similarity=0.108 Sum_probs=57.1
Q ss_pred CCCCceEEEEcCCc-chHHHHHHhhCCCCeEEEeec-hHHHHhCCCCCCceEEEcCCCCCCCCC-CEEEeccccccCChh
Q 018366 192 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFDSVPEG-DAILMKWILHCWDDD 268 (357)
Q Consensus 192 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~-D~i~~~~~lh~~~~~ 268 (357)
..+..+||-+|+|. |..+..+++.. +.++++.+. ++-.+.+++..--.++ .|. +.+..+ |+|+-.-.- +
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~-~~~~~~~D~vid~~g~-----~ 245 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY-TDP-KQCKEELDFIISTIPT-----H 245 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE-SSG-GGCCSCEEEEEECCCS-----C
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec-CCH-HHHhcCCCEEEECCCc-----H
Confidence 66778999999875 78888888876 568888885 4444444433222222 221 122224 887743221 1
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEee
Q 018366 269 HCLRILKNCYKAIPDNGKVIVMNS 292 (357)
Q Consensus 269 ~~~~~L~~~~~~LkpgG~l~i~e~ 292 (357)
..+..+.+.|+|+|+++++-.
T Consensus 246 ---~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 246 ---YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ---CCHHHHHTTEEEEEEEEECCC
T ss_pred ---HHHHHHHHHHhcCCEEEEECC
Confidence 246778889999999998754
Done!