Query 018367
Match_columns 357
No_of_seqs 280 out of 1625
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1169 Diacylglycerol kinase 100.0 5.7E-51 1.2E-55 418.3 17.8 260 51-356 215-504 (634)
2 KOG0782 Predicted diacylglycer 100.0 4.5E-46 9.7E-51 372.7 11.0 270 38-354 283-593 (1004)
3 PRK13059 putative lipid kinase 100.0 1E-31 2.2E-36 259.4 18.4 178 82-346 2-183 (295)
4 PRK00861 putative lipid kinase 100.0 3.5E-31 7.6E-36 255.7 20.4 180 81-346 2-182 (300)
5 PRK13055 putative lipid kinase 100.0 5.2E-31 1.1E-35 258.8 18.7 184 81-346 2-188 (334)
6 PRK11914 diacylglycerol kinase 100.0 1.2E-30 2.5E-35 252.7 20.6 186 80-346 7-194 (306)
7 PRK13057 putative lipid kinase 100.0 1.7E-30 3.7E-35 249.6 19.0 173 85-346 1-175 (287)
8 PRK13337 putative lipid kinase 100.0 2.1E-30 4.5E-35 251.1 18.6 180 82-346 2-184 (304)
9 COG1597 LCB5 Sphingosine kinas 100.0 2.2E-30 4.8E-35 251.3 18.8 187 81-353 2-191 (301)
10 TIGR03702 lip_kinase_YegS lipi 100.0 5.2E-30 1.1E-34 247.0 18.7 163 83-320 1-166 (293)
11 PRK13054 lipid kinase; Reviewe 100.0 1.3E-29 2.8E-34 245.1 19.7 186 80-351 2-189 (300)
12 TIGR00147 lipid kinase, YegS/R 100.0 3.4E-29 7.4E-34 240.6 18.5 184 82-351 2-188 (293)
13 PRK12361 hypothetical protein; 100.0 3.8E-29 8.3E-34 260.2 19.8 183 81-346 242-426 (547)
14 PLN02958 diacylglycerol kinase 100.0 1.1E-27 2.4E-32 245.6 18.1 173 78-320 108-290 (481)
15 KOG1170 Diacylglycerol kinase 99.9 9.7E-29 2.1E-33 255.7 0.9 134 78-229 191-324 (1099)
16 PLN02204 diacylglycerol kinase 99.9 9.4E-26 2E-30 233.4 20.9 200 78-346 156-428 (601)
17 PF00781 DAGK_cat: Diacylglyce 99.9 4.8E-24 1E-28 182.0 12.5 122 83-229 1-128 (130)
18 smart00046 DAGKc Diacylglycero 99.9 1.1E-22 2.4E-27 173.1 11.9 100 85-199 1-101 (124)
19 KOG1116 Sphingosine kinase, in 99.8 1.1E-18 2.4E-23 178.5 12.2 179 76-320 174-358 (579)
20 PF00609 DAGK_acc: Diacylglyce 99.6 2.5E-16 5.4E-21 139.9 2.3 65 276-346 2-66 (161)
21 KOG1115 Ceramide kinase [Lipid 99.3 4.7E-12 1E-16 125.0 9.3 178 76-320 153-348 (516)
22 KOG4435 Predicted lipid kinase 99.0 2E-09 4.4E-14 106.4 11.3 133 78-226 57-196 (535)
23 smart00045 DAGKa Diacylglycero 98.8 2.7E-09 5.8E-14 94.5 1.6 65 276-346 2-66 (160)
24 PRK03708 ppnK inorganic polyph 98.4 1.5E-06 3.2E-11 83.9 10.4 114 83-222 2-116 (277)
25 PRK02645 ppnK inorganic polyph 98.3 6.8E-06 1.5E-10 80.4 11.2 124 80-231 2-128 (305)
26 PRK03378 ppnK inorganic polyph 97.9 0.00012 2.6E-09 71.4 11.1 124 81-230 5-131 (292)
27 COG3199 Predicted inorganic po 97.6 0.00049 1.1E-08 67.9 11.4 56 149-218 101-157 (355)
28 PRK01231 ppnK inorganic polyph 97.4 0.0028 6.1E-08 61.9 12.9 123 81-231 4-131 (295)
29 PF01513 NAD_kinase: ATP-NAD k 97.2 0.0019 4.1E-08 62.5 9.0 70 148-231 76-145 (285)
30 PRK03372 ppnK inorganic polyph 97.1 0.0076 1.6E-07 59.2 12.9 128 79-227 3-137 (306)
31 PRK14077 pnk inorganic polypho 97.0 0.0099 2.1E-07 57.9 12.5 125 77-229 6-131 (287)
32 PRK02155 ppnK NAD(+)/NADH kina 96.9 0.013 2.9E-07 57.0 11.8 125 81-231 5-132 (291)
33 PRK04539 ppnK inorganic polyph 96.8 0.019 4.2E-07 56.1 12.2 129 80-230 4-136 (296)
34 PRK02649 ppnK inorganic polyph 96.7 0.027 5.8E-07 55.4 12.3 127 82-229 2-135 (305)
35 PRK01911 ppnK inorganic polyph 96.6 0.039 8.5E-07 53.9 13.1 126 83-230 2-132 (292)
36 PRK03501 ppnK inorganic polyph 96.6 0.039 8.4E-07 53.2 12.6 106 82-230 3-109 (264)
37 PLN02935 Bifunctional NADH kin 96.2 0.081 1.8E-06 55.2 12.9 129 78-225 191-325 (508)
38 PRK14075 pnk inorganic polypho 96.0 0.11 2.3E-06 49.8 12.3 66 149-231 42-107 (256)
39 PRK14076 pnk inorganic polypho 95.5 0.14 3.1E-06 54.3 12.0 59 149-221 349-407 (569)
40 PRK04885 ppnK inorganic polyph 95.4 0.19 4.2E-06 48.4 11.3 64 149-224 36-99 (265)
41 PRK00561 ppnK inorganic polyph 95.3 0.28 6E-06 47.2 12.0 67 149-229 34-101 (259)
42 PRK01185 ppnK inorganic polyph 94.8 0.24 5.2E-06 47.9 10.1 115 83-230 2-117 (271)
43 PLN02727 NAD kinase 94.4 0.35 7.6E-06 53.8 11.4 126 75-220 672-801 (986)
44 PLN02929 NADH kinase 93.5 0.5 1.1E-05 46.4 9.5 75 148-230 64-149 (301)
45 PRK02231 ppnK inorganic polyph 93.3 0.58 1.3E-05 45.3 9.5 59 149-221 43-102 (272)
46 PRK04761 ppnK inorganic polyph 91.0 0.33 7.2E-06 46.3 4.7 59 148-219 25-83 (246)
47 PF10254 Pacs-1: PACS-1 cytoso 89.8 1.6 3.5E-05 44.6 8.8 47 149-196 76-128 (414)
48 cd08180 PDD 1,3-propanediol de 88.5 3.6 7.7E-05 40.5 10.0 42 148-190 78-125 (332)
49 COG0061 nadF NAD kinase [Coenz 88.5 2.6 5.7E-05 40.8 8.9 71 148-232 55-125 (281)
50 cd08197 DOIS 2-deoxy-scyllo-in 86.6 3 6.6E-05 41.7 8.3 97 82-190 24-126 (355)
51 PRK09860 putative alcohol dehy 85.2 6.6 0.00014 39.6 10.1 125 59-196 5-152 (383)
52 TIGR03405 Phn_Fe-ADH phosphona 84.7 7.4 0.00016 38.8 10.1 100 82-193 24-145 (355)
53 cd08176 LPO Lactadehyde:propan 83.2 7.6 0.00016 39.0 9.5 46 148-194 85-147 (377)
54 cd08179 NADPH_BDH NADPH-depend 83.0 7.3 0.00016 39.0 9.2 120 60-192 2-144 (375)
55 cd08169 DHQ-like Dehydroquinat 82.6 6.4 0.00014 39.2 8.5 91 82-184 24-117 (344)
56 cd08172 GlyDH-like1 Glycerol d 80.9 12 0.00025 37.1 9.8 90 82-191 24-117 (347)
57 cd08195 DHQS Dehydroquinate sy 80.5 6.5 0.00014 39.0 7.8 92 81-184 24-119 (345)
58 cd08186 Fe-ADH8 Iron-containin 79.7 7.6 0.00017 39.1 8.1 100 82-193 27-146 (383)
59 cd08185 Fe-ADH1 Iron-containin 79.7 12 0.00026 37.5 9.5 101 82-194 26-150 (380)
60 cd08187 BDH Butanol dehydrogen 78.9 10 0.00023 38.0 8.8 122 59-193 3-147 (382)
61 cd07766 DHQ_Fe-ADH Dehydroquin 78.8 13 0.00029 36.2 9.3 91 82-187 24-117 (332)
62 KOG4180 Predicted kinase [Gene 78.7 1.6 3.4E-05 43.4 2.6 72 149-231 106-181 (395)
63 PRK09423 gldA glycerol dehydro 78.6 10 0.00022 37.9 8.6 114 58-192 3-126 (366)
64 cd08181 PPD-like 1,3-propanedi 78.0 15 0.00033 36.5 9.6 45 148-193 83-143 (357)
65 PRK10624 L-1,2-propanediol oxi 77.6 19 0.00042 36.2 10.2 124 58-194 3-151 (382)
66 TIGR01357 aroB 3-dehydroquinat 77.5 10 0.00022 37.5 8.0 91 82-184 21-115 (344)
67 cd08171 GlyDH-like2 Glycerol d 77.1 4.9 0.00011 39.8 5.7 90 82-190 23-118 (345)
68 COG1454 EutG Alcohol dehydroge 77.1 23 0.00049 36.1 10.4 125 59-198 3-152 (377)
69 PRK00002 aroB 3-dehydroquinate 76.0 12 0.00027 37.2 8.3 98 80-189 30-133 (358)
70 cd08173 Gro1PDH Sn-glycerol-1- 74.4 17 0.00036 35.9 8.7 85 82-185 26-111 (339)
71 cd08194 Fe-ADH6 Iron-containin 73.9 21 0.00046 35.7 9.4 97 82-191 24-139 (375)
72 cd08551 Fe-ADH iron-containing 73.1 19 0.0004 35.9 8.7 42 148-190 80-138 (370)
73 PF00731 AIRC: AIR carboxylase 72.8 14 0.00029 32.8 6.7 81 93-187 8-89 (150)
74 PRK15138 aldehyde reductase; P 72.4 19 0.00042 36.3 8.7 124 59-196 5-152 (387)
75 TIGR02638 lactal_redase lactal 72.3 23 0.00049 35.6 9.2 123 59-194 3-150 (379)
76 cd08177 MAR Maleylacetate redu 71.2 22 0.00048 35.1 8.7 90 82-190 24-116 (337)
77 cd08170 GlyDH Glycerol dehydro 70.4 14 0.00031 36.5 7.2 92 82-192 23-119 (351)
78 PTZ00286 6-phospho-1-fructokin 70.0 15 0.00031 38.4 7.3 47 150-198 178-230 (459)
79 TIGR02483 PFK_mixed phosphofru 68.6 18 0.0004 35.8 7.4 45 149-198 95-142 (324)
80 TIGR02482 PFKA_ATP 6-phosphofr 68.0 23 0.0005 34.8 7.9 40 149-192 92-131 (301)
81 cd08192 Fe-ADH7 Iron-containin 67.5 26 0.00057 34.9 8.4 43 148-191 81-144 (370)
82 cd08189 Fe-ADH5 Iron-containin 67.5 27 0.00058 35.0 8.5 100 81-193 26-145 (374)
83 cd08199 EEVS 2-epi-5-epi-valio 67.1 26 0.00057 35.0 8.3 33 150-184 90-122 (354)
84 cd08188 Fe-ADH4 Iron-containin 66.5 48 0.001 33.2 10.1 44 148-192 85-145 (377)
85 cd08550 GlyDH-like Glycerol_de 64.7 27 0.00058 34.6 7.8 40 148-191 77-118 (349)
86 PLN02564 6-phosphofructokinase 64.1 19 0.00041 37.8 6.8 47 150-198 178-230 (484)
87 COG1979 Uncharacterized oxidor 63.7 42 0.00091 33.8 8.6 88 59-157 5-94 (384)
88 PRK06830 diphosphate--fructose 63.6 19 0.00042 37.3 6.7 47 150-198 174-226 (443)
89 cd00363 PFK Phosphofructokinas 62.3 27 0.00058 34.8 7.3 41 150-191 94-136 (338)
90 cd00763 Bacterial_PFK Phosphof 61.6 31 0.00066 34.2 7.4 38 149-191 93-130 (317)
91 PRK00843 egsA NAD(P)-dependent 60.8 44 0.00096 33.2 8.5 107 58-184 6-119 (350)
92 cd08183 Fe-ADH2 Iron-containin 60.5 50 0.0011 33.0 9.0 92 82-192 23-139 (374)
93 PLN00180 NDF6 (NDH-dependent f 58.7 2.1 4.5E-05 38.1 -1.2 13 154-166 130-142 (180)
94 PRK14072 6-phosphofructokinase 58.5 40 0.00086 34.7 7.9 41 150-191 105-147 (416)
95 KOG2178 Predicted sugar kinase 58.2 10 0.00022 38.6 3.5 70 149-232 169-240 (409)
96 cd08174 G1PDH-like Glycerol-1- 58.0 73 0.0016 31.2 9.5 32 149-184 76-107 (331)
97 PLN02834 3-dehydroquinate synt 56.6 43 0.00094 34.5 7.8 92 82-185 101-198 (433)
98 cd08182 HEPD Hydroxyethylphosp 56.1 62 0.0013 32.2 8.7 42 148-190 77-139 (367)
99 cd08175 G1PDH Glycerol-1-phosp 55.9 40 0.00086 33.3 7.2 33 148-184 80-112 (348)
100 PRK03202 6-phosphofructokinase 54.5 44 0.00095 33.2 7.2 39 149-192 94-132 (320)
101 cd08196 DHQS-like1 Dehydroquin 53.5 90 0.002 31.2 9.3 77 82-169 20-96 (346)
102 cd08178 AAD_C C-terminal alcoh 53.3 79 0.0017 31.9 9.0 20 148-168 78-97 (398)
103 PLN02884 6-phosphofructokinase 53.2 46 0.001 34.2 7.3 49 149-198 144-197 (411)
104 cd08198 DHQS-like2 Dehydroquin 52.8 1.1E+02 0.0023 31.1 9.8 35 148-184 99-133 (369)
105 PRK06203 aroB 3-dehydroquinate 52.2 96 0.0021 31.5 9.4 92 81-184 42-145 (389)
106 PF00465 Fe-ADH: Iron-containi 52.0 34 0.00073 34.0 6.1 99 83-197 23-144 (366)
107 cd08549 G1PDH_related Glycerol 51.0 59 0.0013 32.0 7.6 33 148-184 80-112 (332)
108 PRK14071 6-phosphofructokinase 50.7 63 0.0014 32.6 7.7 45 150-198 109-156 (360)
109 cd08193 HVD 5-hydroxyvalerate 50.0 1.1E+02 0.0024 30.6 9.4 44 148-192 83-143 (376)
110 PRK13805 bifunctional acetalde 47.7 1.4E+02 0.0031 33.4 10.7 98 58-168 455-558 (862)
111 PRK06555 pyrophosphate--fructo 47.5 48 0.001 34.0 6.4 40 150-191 114-156 (403)
112 PRK15454 ethanol dehydrogenase 45.3 1.6E+02 0.0035 29.8 9.8 126 58-196 22-170 (395)
113 PF12219 End_tail_spike: Catal 45.0 11 0.00024 32.9 1.1 13 150-162 86-98 (160)
114 PF00365 PFK: Phosphofructokin 43.7 34 0.00074 33.2 4.5 39 150-192 94-132 (282)
115 cd08191 HHD 6-hydroxyhexanoate 43.3 1.5E+02 0.0033 29.8 9.2 96 82-193 23-140 (386)
116 PLN03028 pyrophosphate--fructo 42.9 65 0.0014 34.9 6.7 47 150-198 175-229 (610)
117 PRK07085 diphosphate--fructose 42.6 70 0.0015 34.3 6.9 48 150-198 166-220 (555)
118 TIGR02478 6PF1K_euk 6-phosphof 41.7 84 0.0018 34.9 7.6 41 150-191 480-523 (745)
119 TIGR02477 PFKA_PPi diphosphate 41.4 66 0.0014 34.3 6.5 48 150-198 163-217 (539)
120 PRK10586 putative oxidoreducta 39.2 1.6E+02 0.0034 29.5 8.6 35 149-187 87-121 (362)
121 cd08184 Fe-ADH3 Iron-containin 37.6 3.4E+02 0.0074 27.0 10.6 47 148-195 81-144 (347)
122 PTZ00287 6-phosphofructokinase 36.7 73 0.0016 37.7 6.3 48 150-198 930-984 (1419)
123 TIGR02478 6PF1K_euk 6-phosphof 35.8 1.3E+02 0.0027 33.5 7.7 43 149-191 95-155 (745)
124 cd02007 TPP_DXS Thiamine pyrop 35.7 1.4E+02 0.003 27.1 7.0 64 149-216 97-177 (195)
125 PF05893 LuxC: Acyl-CoA reduct 35.0 2.1E+02 0.0044 29.2 8.7 95 91-186 95-210 (399)
126 PRK14021 bifunctional shikimat 35.0 1.6E+02 0.0034 31.3 8.1 35 148-184 269-303 (542)
127 cd01836 FeeA_FeeB_like SGNH_hy 34.1 91 0.002 27.2 5.4 59 151-217 44-102 (191)
128 PF13685 Fe-ADH_2: Iron-contai 33.9 55 0.0012 31.3 4.2 37 149-189 76-112 (250)
129 PRK06756 flavodoxin; Provision 33.6 2E+02 0.0044 24.3 7.3 27 82-110 2-28 (148)
130 TIGR03590 PseG pseudaminic aci 33.6 2.3E+02 0.0049 27.0 8.4 29 147-184 240-268 (279)
131 TIGR03846 sulfopy_beta sulfopy 33.3 1.4E+02 0.003 26.8 6.4 76 150-225 60-153 (181)
132 cd00765 Pyrophosphate_PFK Phos 33.0 1.1E+02 0.0023 32.8 6.5 41 150-192 168-211 (550)
133 cd04502 SGNH_hydrolase_like_7 32.3 58 0.0013 28.0 3.7 59 152-217 27-85 (171)
134 PTZ00468 phosphofructokinase f 31.6 1.2E+02 0.0026 35.7 6.9 43 149-192 801-850 (1328)
135 PTZ00468 phosphofructokinase f 30.8 1.3E+02 0.0028 35.5 7.0 47 150-198 198-252 (1328)
136 PLN02251 pyrophosphate-depende 29.0 1.5E+02 0.0033 31.9 6.8 42 150-193 192-236 (568)
137 cd00764 Eukaryotic_PFK Phospho 27.5 2E+02 0.0043 32.1 7.6 42 150-191 99-158 (762)
138 PF12138 Spherulin4: Spherulat 27.2 71 0.0015 30.6 3.6 22 76-97 25-46 (253)
139 cd00764 Eukaryotic_PFK Phospho 26.9 2.3E+02 0.0049 31.7 7.9 42 149-191 479-523 (762)
140 TIGR02177 PorB_KorB 2-oxoacid: 26.4 96 0.0021 30.3 4.4 20 149-168 71-95 (287)
141 COG1691 NCAIR mutase (PurE)-re 26.1 1.1E+02 0.0025 29.1 4.7 33 149-187 174-206 (254)
142 PF03641 Lysine_decarbox: Poss 26.0 71 0.0015 27.2 3.1 34 150-183 56-91 (133)
143 COG0337 AroB 3-dehydroquinate 25.5 2.9E+02 0.0062 28.1 7.7 82 76-169 28-114 (360)
144 PRK00536 speE spermidine synth 24.9 53 0.0012 31.7 2.3 16 150-165 75-91 (262)
145 COG0205 PfkA 6-phosphofructoki 24.8 2.7E+02 0.0058 28.1 7.4 38 150-191 96-133 (347)
146 PRK11866 2-oxoacid ferredoxin 23.1 58 0.0013 31.7 2.2 21 148-168 76-97 (279)
147 PRK05778 2-oxoglutarate ferred 22.7 1.1E+02 0.0025 30.0 4.2 21 148-168 87-112 (301)
148 cd01822 Lysophospholipase_L1_l 22.7 1E+02 0.0022 26.3 3.5 59 153-218 42-100 (177)
149 COG1049 AcnB Aconitase B [Ener 22.5 54 0.0012 35.5 2.0 45 152-196 461-514 (852)
150 PRK05948 precorrin-2 methyltra 22.4 6.6E+02 0.014 23.6 10.6 49 148-198 92-145 (238)
151 TIGR00730 conserved hypothetic 22.4 95 0.0021 28.0 3.4 32 150-182 99-132 (178)
152 PTZ00287 6-phosphofructokinase 22.3 2.1E+02 0.0046 34.1 6.7 48 150-198 273-327 (1419)
153 cd03376 TPP_PFOR_porB_like Thi 22.3 1.3E+02 0.0029 28.2 4.4 19 150-168 81-100 (235)
154 cd01844 SGNH_hydrolase_like_6 22.2 94 0.002 27.0 3.2 57 150-218 34-90 (177)
155 PF13500 AAA_26: AAA domain; P 22.0 97 0.0021 27.6 3.4 38 148-185 130-167 (199)
156 TIGR00725 conserved hypothetic 21.4 1.3E+02 0.0027 26.6 3.9 29 150-183 94-122 (159)
157 cd03372 TPP_ComE Thiamine pyro 21.1 1.8E+02 0.004 25.8 4.9 20 150-169 60-79 (179)
No 1
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-51 Score=418.27 Aligned_cols=260 Identities=33% Similarity=0.595 Sum_probs=211.7
Q ss_pred CccccccccccccCeEEecCCccc--------------------------cccCCCCCcEEEEEcCCCCCCChhhHHHHH
Q 018367 51 TPKSKILNNYYIPNYILVSGSEVQ--------------------------RSSLIPSCPVLVFINSKSGGQLGGKLLLTY 104 (357)
Q Consensus 51 ~~~~~~~~~~~~p~~~~~~~~~~~--------------------------~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~ 104 (357)
.++.+.+++.++|++++.|..... ...+.+.+|++|||||+||+++|..+++++
T Consensus 215 ~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PLlVfvNpKSGg~~G~~ll~~f 294 (634)
T KOG1169|consen 215 ECDLGELKDHILPPSTLRPARTARVASDHSGLPGEKSEEVTDAKKMQQLLVTDPPDWRPLLVFVNPKSGGQQGERLLRRF 294 (634)
T ss_pred hccChhhhhccCCceeeecccccccccccccccccccccccccccccccccCCCCCCcceEEEEecCCcccccHHHHHHH
Confidence 357889999999999998874431 244567799999999999999999999999
Q ss_pred HHhhccCcEEEeeccC-hhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHHhCCCC---CCCCEE
Q 018367 105 RSLLNENQVIDLGEKA-PDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLP---HSPPVA 180 (357)
Q Consensus 105 ~~~L~~~~V~~l~~~~-p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~~~~~~---~~~plg 180 (357)
+.+|++.|||+++... |..++. ++..+ ...+|+||||||||.||++.+.+++.+ +.||+|
T Consensus 295 ~~lLnp~QVfdl~~~~~p~~gL~-l~~~~---------------~~~riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVA 358 (634)
T KOG1169|consen 295 RYLLNPVQVFDLLKRGGPRPGLT-LFRDV---------------PDFRILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVA 358 (634)
T ss_pred HHhcChhhEEecccCCCCchhHH-HHHhC---------------CcceEEEecCCCcchhhhhhHHHhhccccCCCCCeE
Confidence 9999999999999864 777664 22221 345999999999999999999876432 589999
Q ss_pred EEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCCCCCCCCCCCCCCccccccccccc
Q 018367 181 TVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGSFDPIAPLELPHSLHAFHRVSQ 260 (357)
Q Consensus 181 IIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~g~~~~~~~~~~p~s~~~~~~~~~ 260 (357)
|+|+||||||||.|+||.++++.+.. +..+|+.|..+.+.++|+|+|.+.+.... .. |.+++.-
T Consensus 359 ilPLGTGNDLsR~l~WGgg~~g~~~~-~~~iL~~i~~a~v~~lDrW~v~v~~~~~~-----~~-----~~~~~~~----- 422 (634)
T KOG1169|consen 359 ILPLGTGNDLSRVLRWGGGYPGEDRN-LIKILKDIEEAPVTKLDRWKVLVEPQSGE-----LV-----QYSLKPP----- 422 (634)
T ss_pred EEecCCCCchHhhcCCCCCCCcchhh-HHHHHHhhhhccceecceeeEEeeccccc-----cc-----cccccCC-----
Confidence 99999999999999999999998655 99999999999999999999998864321 00 1111100
Q ss_pred cccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhhhccccccccCCCcccCccceEE
Q 018367 261 KDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQGWFLAPLLHPSSRNIAQMAK 340 (357)
Q Consensus 261 ~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~k~~~~~~~l~~~~~~~~~~~~~ 340 (357)
. .+.+.+...|+||||||+||+|+++||.+|+++|++|++|+.||++|+.+|++. ||++++. +++-.++
T Consensus 423 -~----~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~-~f~~~ck-----~~~~~i~ 491 (634)
T KOG1169|consen 423 -E----KGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQE-TFAARCK-----NLHLHIK 491 (634)
T ss_pred -C----cCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchh-hHHHhhc-----CCccceE
Confidence 0 011223358999999999999999999999999999999999999999999955 8888764 5555677
Q ss_pred EEEeccCCCeEEccCC
Q 018367 341 VKIMKKQGQWEELHIP 356 (357)
Q Consensus 341 v~vd~~~~~~~~~~~~ 356 (357)
+.+++ +|+|+++|
T Consensus 492 i~~~~---d~~dl~~p 504 (634)
T KOG1169|consen 492 IELDG---DGEDLELP 504 (634)
T ss_pred EEEcc---cceEccCC
Confidence 77777 59999998
No 2
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-46 Score=372.66 Aligned_cols=270 Identities=32% Similarity=0.546 Sum_probs=217.2
Q ss_pred chHHhhh--h---hhhhcCccccccccccc-cCeEEecCCc-------------------------------cc--cccC
Q 018367 38 HDLLHRS--S---EEAAATPKSKILNNYYI-PNYILVSGSE-------------------------------VQ--RSSL 78 (357)
Q Consensus 38 ~~~~~~~--~---~~~~~~~~~~~~~~~~~-p~~~~~~~~~-------------------------------~~--~~~~ 78 (357)
-.-+|.| | +..+..|..|.+..+++ |.+||.-... .+ +.+.
T Consensus 283 KqayH~KvtCFml~~iEEpCslGahaavivPPTWIlr~~~pqnslkaskkkkRtsfkRKasKkg~ee~k~rpFvikPtsS 362 (1004)
T KOG0782|consen 283 KQAYHLKVTCFMLDKIEEPCSLGAHAAVIVPPTWILRLANPQNSLKASKKKKRTSFKRKASKKGHEENKGRPFVIKPTSS 362 (1004)
T ss_pred HHHhhcchhhhhhhhhhccccccccceeecCchHheeecCccchhhhhhhcccCchhhhhhhccchhccCCceEEccCCC
Confidence 3556776 3 55666678888999888 5566643211 00 2345
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 018367 79 IPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (357)
Q Consensus 79 ~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGD 158 (357)
.+++|++|||||+|||++|.++++.+.-+|++.||||++..+|..+++ +++.+ ..++|++||||
T Consensus 363 plmkPLLVFVNPKSGGNqGsK~lq~f~WyLNPRQVFDlsq~GPK~aLE-myRKV---------------~nLRILaCGGD 426 (1004)
T KOG0782|consen 363 PLMKPLLVFVNPKSGGNQGSKALQTFCWYLNPRQVFDLSQLGPKFALE-MYRKV---------------VNLRILACGGD 426 (1004)
T ss_pred CCCCceEEEecCCCCCcchHHHHHHHHHhcChhhheehhccCcHHHHH-HHHhc---------------cceEEEEecCC
Confidence 567999999999999999999999999999999999999999999886 55543 34799999999
Q ss_pred hHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCCC
Q 018367 159 GTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 238 (357)
Q Consensus 159 GTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~g 238 (357)
|||+|++..|.++++...||+||+|+||||||||+|+|+.+|. .+.+.+++..+..|.++.+|+|.+.+.+..
T Consensus 427 GTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgyt---DEPvSkil~~ve~gtvVqLDRW~lhvEpNp---- 499 (1004)
T KOG0782|consen 427 GTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYT---DEPVSKILQAVEHGTVVQLDRWRLHVEPNP---- 499 (1004)
T ss_pred CceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcC---cchHHHHHHHHhcCcEEeeeeeeecccCCC----
Confidence 9999999999999888999999999999999999999999654 357889999999999999999999876531
Q ss_pred CCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhh
Q 018367 239 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (357)
Q Consensus 239 ~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (357)
++++ -|. ... -.+.+.+ ..|+||||+||||.|+..||.+|+.||++|++|+.||+.|+-.++
T Consensus 500 ~~~p---Ee~----ddG----~~~~LPL-------~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~af 561 (1004)
T KOG0782|consen 500 SCNP---EEE----DDG----MQSALPL-------TVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAF 561 (1004)
T ss_pred CCCh---hhh----ccc----chhccch-------hHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhH
Confidence 1211 000 000 0011111 269999999999999999999999999999999999999999999
Q ss_pred hccccccccCCCcccCccceEEEEEecc--CCCeEEcc
Q 018367 319 TQGWFLAPLLHPSSRNIAQMAKVKIMKK--QGQWEELH 354 (357)
Q Consensus 319 k~~~~~~~l~~~~~~~~~~~~~v~vd~~--~~~~~~~~ 354 (357)
.. ++..++|++.+.|+|.+||. .-..+||+
T Consensus 562 sD------fl~rSskDL~khi~vvCDG~DlTPkIqeLK 593 (1004)
T KOG0782|consen 562 SD------FLKRSSKDLCKHITVVCDGVDLTPKIQELK 593 (1004)
T ss_pred HH------HHhhhhHHhhhheEEEecCccCChhhhhcc
Confidence 99 88889999999999999997 33355544
No 3
>PRK13059 putative lipid kinase; Reviewed
Probab=99.98 E-value=1e-31 Score=259.44 Aligned_cols=178 Identities=22% Similarity=0.206 Sum_probs=137.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCc--E--EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V--~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
++++||+||.||++++.+.|+.+++.|.... + +.++. +.+ .+...... ....+.||++||
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~--~~~-~~~~~~~~-------------~~~~d~vi~~GG 65 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISL--EYD-LKNAFKDI-------------DESYKYILIAGG 65 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccC--cch-HHHHHHHh-------------hcCCCEEEEECC
Confidence 5799999999999998888888888886543 2 22222 222 12111111 123468999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCC
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKE 237 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~ 237 (357)
|||||+|+|+|.+. ..++||||||+||||||||+||++. ++.++++.|..++.+++|+++++-
T Consensus 66 DGTv~evv~gl~~~--~~~~~lgviP~GTgNdfAr~lgi~~--------~~~~a~~~i~~g~~~~vDlg~v~~------- 128 (295)
T PRK13059 66 DGTVDNVVNAMKKL--NIDLPIGILPVGTANDFAKFLGMPT--------DIGEACEQILKSKPKKVDLGKIND------- 128 (295)
T ss_pred ccHHHHHHHHHHhc--CCCCcEEEECCCCHhHHHHHhCCCC--------CHHHHHHHHHhCCcEEeeEEEECC-------
Confidence 99999999999863 3468999999999999999999997 689999999999999999998851
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHh
Q 018367 238 GSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLA 317 (357)
Q Consensus 238 g~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g 317 (357)
++|+|++|+|+||+|++.++...+ +..|++.|++.+
T Consensus 129 ------------------------------------~~f~n~~~~G~~a~v~~~~~~~~k--------~~~G~~aY~~~~ 164 (295)
T PRK13059 129 ------------------------------------KYFINVASTGLFTDVSQKTDVNLK--------NTIGKLAYYLKG 164 (295)
T ss_pred ------------------------------------EEEEEEEeeeechhhhhhccHHHh--------hCcchHHHHHHH
Confidence 379999999999999988865432 356999999999
Q ss_pred hhccccccccCCCcccCccceEEEEEecc
Q 018367 318 GTQGWFLAPLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 318 ~k~~~~~~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
++. +++ .+. ..++|++|++
T Consensus 165 ~~~------l~~--~~~--~~~~i~~d~~ 183 (295)
T PRK13059 165 LEE------LPN--FRK--LKVKVTSEEV 183 (295)
T ss_pred HHH------Hhc--CCC--eeEEEEECCE
Confidence 998 653 222 5678888875
No 4
>PRK00861 putative lipid kinase; Reviewed
Probab=99.98 E-value=3.5e-31 Score=255.68 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=139.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccCcEEEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~-~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDG 159 (357)
+++++||+||.||++++.+.|+.+++.|.+..-+++.. +.++++.+.+....+ .+.+.||++||||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a~~~~~-------------~~~d~vv~~GGDG 68 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLAQEAIE-------------RGAELIIASGGDG 68 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHHHHHHh-------------cCCCEEEEECChH
Confidence 36799999999999998888899888886421122211 234555432211111 2456899999999
Q ss_pred HHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCCCC
Q 018367 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGS 239 (357)
Q Consensus 160 TVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~g~ 239 (357)
|||+|+|++.. ..+|||+||+||||||||+||+|. ++.++++.|.++.++++|+++++-
T Consensus 69 Tl~evv~~l~~----~~~~lgviP~GTgNdfAr~lgi~~--------~~~~a~~~i~~g~~~~iDlg~vn~--------- 127 (300)
T PRK00861 69 TLSAVAGALIG----TDIPLGIIPRGTANAFAAALGIPD--------TIEEACRTILQGKTRRVDVAYCNG--------- 127 (300)
T ss_pred HHHHHHHHHhc----CCCcEEEEcCCchhHHHHHcCCCC--------CHHHHHHHHHcCCcEEeeEEEECC---------
Confidence 99999999975 468999999999999999999997 688899999999999999998851
Q ss_pred CCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhhh
Q 018367 240 FDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGT 319 (357)
Q Consensus 240 ~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~k 319 (357)
++|+|.+|+||||+|++..++..+ +..|++.|++.+++
T Consensus 128 ----------------------------------~~fin~a~~G~~a~v~~~~~~~~k--------~~~G~~aY~~~~l~ 165 (300)
T PRK00861 128 ----------------------------------QPMILLAGIGFEAETVEEADREAK--------NRFGILAYILSGLQ 165 (300)
T ss_pred ----------------------------------EEEEEEEeccHHHHHHHHhhHHHH--------hcccHHHHHHHHHH
Confidence 379999999999999998876543 35689999999999
Q ss_pred ccccccccCCCcccCccceEEEEEecc
Q 018367 320 QGWFLAPLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
. ++++ +. ..+++++|++
T Consensus 166 ~------l~~~--~~--~~~~i~~dg~ 182 (300)
T PRK00861 166 Q------LREL--ES--FEVEIETEDQ 182 (300)
T ss_pred H------hccC--CC--eeEEEEECCe
Confidence 8 7532 22 5677788874
No 5
>PRK13055 putative lipid kinase; Reviewed
Probab=99.97 E-value=5.2e-31 Score=258.78 Aligned_cols=184 Identities=17% Similarity=0.186 Sum_probs=142.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EE--eeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-ID--LGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~--l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
+++++||+||.||++++.+.|..+++.|....+ +. .+...++++.+ +.+.+. ..+.+.|||+||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~-~~~~~~------------~~~~d~vvv~GG 68 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKN-EAKRAA------------EAGFDLIIAAGG 68 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHH-HHHHHh------------hcCCCEEEEECC
Confidence 368999999999999999999999998875432 22 23223445433 222211 023468999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCC
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKE 237 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~ 237 (357)
|||||+|+|+|... ...+||||||+||||||||+||+|.+ ++.++++.|.+++++++|+++++-
T Consensus 69 DGTl~evvngl~~~--~~~~~LgiiP~GTgNdfAr~Lgi~~~-------~~~~a~~~l~~g~~~~vD~g~v~~------- 132 (334)
T PRK13055 69 DGTINEVVNGIAPL--EKRPKMAIIPAGTTNDYARALKIPRD-------NPVEAAKVILKNQTIKMDIGRANE------- 132 (334)
T ss_pred CCHHHHHHHHHhhc--CCCCcEEEECCCchhHHHHHcCCCCc-------CHHHHHHHHHcCCcEEeeEEEECC-------
Confidence 99999999999853 34689999999999999999999862 378889999999999999998840
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHh
Q 018367 238 GSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLA 317 (357)
Q Consensus 238 g~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g 317 (357)
+ ++|+|.+|+|+||+|++..+..++ +..|+++|++.+
T Consensus 133 ------------------------~-----------~~F~n~ag~G~da~v~~~~~~~~k--------~~~G~laY~~~~ 169 (334)
T PRK13055 133 ------------------------D-----------KYFINIAAGGSLTELTYSVPSQLK--------SMFGYLAYLAKG 169 (334)
T ss_pred ------------------------C-----------cEEEEEehhccchHHHHhcCHHHH--------hhccHHHHHHHH
Confidence 0 479999999999999988876543 356899999999
Q ss_pred hhccccccccCCCcccCccceEEEEEecc
Q 018367 318 GTQGWFLAPLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 318 ~k~~~~~~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
++. +++.. . ..++|++|+.
T Consensus 170 ~~~------l~~~~--~--~~~~i~~d~~ 188 (334)
T PRK13055 170 AEL------LPRVS--P--VPVRITYDEG 188 (334)
T ss_pred HHH------HHhcC--C--eeEEEEECCE
Confidence 998 75422 2 5678888874
No 6
>PRK11914 diacylglycerol kinase; Reviewed
Probab=99.97 E-value=1.2e-30 Score=252.73 Aligned_cols=186 Identities=19% Similarity=0.136 Sum_probs=141.2
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEe-eccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 80 PSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDL-GEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 80 ~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l-~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
.++++++|+||.||++++.+.|.++.+.|..... +.+ ..+.++++.+.+...++ .+.+.|||+||
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~-------------~~~d~vvv~GG 73 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALA-------------KGTDALVVVGG 73 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHh-------------cCCCEEEEECC
Confidence 4588999999999999999999888888865332 221 22345665432211111 23468999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCC
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKE 237 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~ 237 (357)
|||||+|+|++.. .++||||||+||||||||+||+|.. +++++++.|..++++++|+++|+...
T Consensus 74 DGTi~evv~~l~~----~~~~lgiiP~GT~NdfAr~lg~~~~-------~~~~a~~~i~~g~~~~iDlg~v~~~~----- 137 (306)
T PRK11914 74 DGVISNALQVLAG----TDIPLGIIPAGTGNDHAREFGIPTG-------DPEAAADVIVDGWTETVDLGRIQDDD----- 137 (306)
T ss_pred chHHHHHhHHhcc----CCCcEEEEeCCCcchhHHHcCCCCC-------CHHHHHHHHHcCCceEEEEEEEecCC-----
Confidence 9999999999974 4689999999999999999999852 57888999999999999999996310
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHh
Q 018367 238 GSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLA 317 (357)
Q Consensus 238 g~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g 317 (357)
+ . .++|+|++|+||||.|+...++.| +..+++.|++.+
T Consensus 138 ------------------------~------~---~~~f~n~~~~G~~a~v~~~~~~~k---------~~~G~~aY~~~~ 175 (306)
T PRK11914 138 ------------------------G------I---VKWFGTVAATGFDSLVTDRANRMR---------WPHGRMRYNLAM 175 (306)
T ss_pred ------------------------C------C---cEEEEEEEeeehHHHHHHHHHhcc---------ccCCchhhHHHH
Confidence 0 0 047999999999999998875542 235899999999
Q ss_pred hhccccccccCCCcccCccceEEEEEecc
Q 018367 318 GTQGWFLAPLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 318 ~k~~~~~~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
++. +++ .+. ..+++++|++
T Consensus 176 l~~------l~~--~~~--~~~~i~~dg~ 194 (306)
T PRK11914 176 LAE------LSK--LRP--LPFRLVLDGT 194 (306)
T ss_pred HHH------HHh--cCC--CcEEEEEeCC
Confidence 998 653 222 5788888883
No 7
>PRK13057 putative lipid kinase; Reviewed
Probab=99.97 E-value=1.7e-30 Score=249.55 Aligned_cols=173 Identities=20% Similarity=0.249 Sum_probs=134.5
Q ss_pred EEEEcCCCCCCChhhHHHHHHHhhccCcE-EEee-ccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHH
Q 018367 85 LVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLG-EKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTAS 162 (357)
Q Consensus 85 lvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~-~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVn 162 (357)
+||+||.||+++ +.+.++++.|..... +.+. .+.++++.+ +.+.++ .+.+.|||+|||||||
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~-~~~~~~-------------~~~d~iiv~GGDGTv~ 64 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAGLELVEPPAEDPDDLSE-VIEAYA-------------DGVDLVIVGGGDGTLN 64 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcCCeEEEEecCCHHHHHH-HHHHHH-------------cCCCEEEEECchHHHH
Confidence 479999999876 467888888865432 2222 234555543 222211 2456899999999999
Q ss_pred HHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCCCCCCC
Q 018367 163 WLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGSFDP 242 (357)
Q Consensus 163 eVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~g~~~~ 242 (357)
+|+|++.. ..+|||+||+||||||||+||++. +++++++.|..++++++|+++++-
T Consensus 65 ~v~~~l~~----~~~~lgiiP~GT~Ndfar~Lg~~~--------~~~~a~~~i~~~~~~~vD~g~~~~------------ 120 (287)
T PRK13057 65 AAAPALVE----TGLPLGILPLGTANDLARTLGIPL--------DLEAAARVIATGQVRRIDLGWVNG------------ 120 (287)
T ss_pred HHHHHHhc----CCCcEEEECCCCccHHHHHcCCCC--------CHHHHHHHHHcCCeEEeeEEEECC------------
Confidence 99999975 468999999999999999999997 688899999999999999998840
Q ss_pred CCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhhhccc
Q 018367 243 IAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQGW 322 (357)
Q Consensus 243 ~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~k~~~ 322 (357)
++|+|++|+||||+|++.++..++ +..|+++|++.+++.
T Consensus 121 -------------------------------~~f~n~~g~G~da~v~~~~~~~~k--------~~~G~~aY~~~~~~~-- 159 (287)
T PRK13057 121 -------------------------------HYFFNVASLGLSAELARRLTKELK--------RRWGTLGYAIAALRV-- 159 (287)
T ss_pred -------------------------------EEEEEEEecCccHHHHHHhhHHhh--------ccCChhHHHHHHHHH--
Confidence 379999999999999999876543 356899999999998
Q ss_pred cccccCCCcccCccceEEEEEecc
Q 018367 323 FLAPLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 323 ~~~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
++++ + ...+++++|++
T Consensus 160 ----l~~~--~--~~~~~l~~d~~ 175 (287)
T PRK13057 160 ----LRRS--R--PFTAEIEHDGR 175 (287)
T ss_pred ----HhhC--C--CeEEEEEECCE
Confidence 7532 2 25677888875
No 8
>PRK13337 putative lipid kinase; Reviewed
Probab=99.97 E-value=2.1e-30 Score=251.06 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=139.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EE--eeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-ID--LGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~--l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGD 158 (357)
+++++|+||+||++++.+.|..+.+.|....+ ++ .++ .++++.+ +.+.+. ..+.+.||++|||
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~-~~~~a~~-~a~~~~------------~~~~d~vvv~GGD 67 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATT-GPGDATL-AAERAV------------ERKFDLVIAAGGD 67 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEec-CCCCHHH-HHHHHH------------hcCCCEEEEEcCC
Confidence 67999999999998888888888877765432 22 232 4566543 222211 0234689999999
Q ss_pred hHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCCC
Q 018367 159 GTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 238 (357)
Q Consensus 159 GTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~g 238 (357)
||||+|+|+|... ...+||||||.||||||||+||++. +++++++.+..+.++++|+++++-
T Consensus 68 GTl~~vv~gl~~~--~~~~~lgiiP~GT~NdfAr~lgi~~--------~~~~a~~~i~~g~~~~vDlg~vn~-------- 129 (304)
T PRK13337 68 GTLNEVVNGIAEK--ENRPKLGIIPVGTTNDFARALHVPR--------DIEKAADVIIEGHTVPVDIGKANN-------- 129 (304)
T ss_pred CHHHHHHHHHhhC--CCCCcEEEECCcCHhHHHHHcCCCC--------CHHHHHHHHHcCCeEEEEEEEECC--------
Confidence 9999999999853 3468999999999999999999997 688899999999999999998851
Q ss_pred CCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhh
Q 018367 239 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (357)
Q Consensus 239 ~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (357)
++|+|.+|+|+||+|++..+...+ +..|+++|++.++
T Consensus 130 -----------------------------------~~fln~~g~G~~a~v~~~~~~~~k--------~~~G~~aY~~~~~ 166 (304)
T PRK13337 130 -----------------------------------RYFINIAGGGRLTELTYEVPSKLK--------TMLGQLAYYLKGI 166 (304)
T ss_pred -----------------------------------EEEEeeehhhHHHHHHHhcCHHHh--------cCcccHHHHHHHH
Confidence 379999999999999988765332 3568999999999
Q ss_pred hccccccccCCCcccCccceEEEEEecc
Q 018367 319 TQGWFLAPLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 319 k~~~~~~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
+. +.+ .+. ..+++++|++
T Consensus 167 ~~------l~~--~~~--~~~~i~~d~~ 184 (304)
T PRK13337 167 EM------LPS--LKA--TDVRIEYDGK 184 (304)
T ss_pred HH------Hhh--CCC--ceEEEEECCe
Confidence 87 643 222 4677888775
No 9
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=251.29 Aligned_cols=187 Identities=24% Similarity=0.266 Sum_probs=147.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE---EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV---IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V---~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
++++.+|+||.||.+++.+.|+++++.|..... ...+. .++++.+.+..... .+.+.||++||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~-~~g~a~~~a~~a~~-------------~~~D~via~GG 67 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTE-EAGDAIEIAREAAV-------------EGYDTVIAAGG 67 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEee-cCccHHHHHHHHHh-------------cCCCEEEEecC
Confidence 578999999999999999999999998875432 22333 33566543222211 24678999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCC
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKE 237 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~ 237 (357)
|||||||+|+|.+.+ .+||||||+||+|||||+||||.+ ++.++++.|.+++++++|+++++
T Consensus 68 DGTv~evingl~~~~---~~~LgilP~GT~NdfAr~Lgip~~-------~~~~Al~~i~~g~~~~vDlg~~~-------- 129 (301)
T COG1597 68 DGTVNEVANGLAGTD---DPPLGILPGGTANDFARALGIPLD-------DIEAALELIKSGETRKVDLGQVN-------- 129 (301)
T ss_pred cchHHHHHHHHhcCC---CCceEEecCCchHHHHHHcCCCch-------hHHHHHHHHHcCCeEEEeehhcC--------
Confidence 999999999999752 223999999999999999999982 49999999999999999999553
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHh
Q 018367 238 GSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLA 317 (357)
Q Consensus 238 g~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g 317 (357)
+ +.||+|.+|+|+||+++++.+..|++ ..|.+.|++.+
T Consensus 130 ------------------------~----------~~~fin~a~~G~~a~~~~~~~~~~k~--------~~g~~~y~~~~ 167 (301)
T COG1597 130 ------------------------G----------RRYFINNAGIGFDAEVVAAVEEERKK--------GFGRLAYALAG 167 (301)
T ss_pred ------------------------C----------cceEEEEeecchhHHHHHhhcHHHHh--------ccchHHHHHHH
Confidence 0 02899999999999999999998863 56899999999
Q ss_pred hhccccccccCCCcccCccceEEEEEeccCCCeEEc
Q 018367 318 GTQGWFLAPLLHPSSRNIAQMAKVKIMKKQGQWEEL 353 (357)
Q Consensus 318 ~k~~~~~~~l~~~~~~~~~~~~~v~vd~~~~~~~~~ 353 (357)
++. +.. .-...++|++|++ .|+..
T Consensus 168 ~~~------l~~----~~~~~~~i~~d~~--~~~~~ 191 (301)
T COG1597 168 LAV------LAR----LKPFRIEIEYDGK--TFEGE 191 (301)
T ss_pred HHh------ccc----cCCCcEEEEEcCc--EEEEE
Confidence 998 542 2236789999996 77753
No 10
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=99.97 E-value=5.2e-30 Score=247.03 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=123.0
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EE--eeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 018367 83 PVLVFINSKSGGQLGGKLLLTYRSLLNENQV-ID--LGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (357)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~--l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDG 159 (357)
++++|+||+||.. +.+..+.+.|....+ +. .+ +.++++.+ +.+.+. ..+.+.|||+||||
T Consensus 1 ~~~~I~N~~~~~~---~~~~~~~~~l~~~g~~~~v~~t-~~~~~a~~-~a~~~~------------~~~~d~vv~~GGDG 63 (293)
T TIGR03702 1 KALLILNGKQADN---EDVREAVGDLRDEGIQLHVRVT-WEKGDAQR-YVAEAL------------ALGVSTVIAGGGDG 63 (293)
T ss_pred CEEEEEeCCccch---hHHHHHHHHHHHCCCeEEEEEe-cCCCCHHH-HHHHHH------------HcCCCEEEEEcCCh
Confidence 4789999998733 245555566654332 22 33 34566543 222211 12346899999999
Q ss_pred HHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCCCC
Q 018367 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGS 239 (357)
Q Consensus 160 TVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~g~ 239 (357)
|||||+|+|.+......+|||+||+||||||||+||+|. +++++++.+..++++++|+++++-
T Consensus 64 Ti~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~--------~~~~a~~~i~~g~~~~iDlg~v~~--------- 126 (293)
T TIGR03702 64 TLREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPL--------EPAKALKLALNGAAQPIDLARVNG--------- 126 (293)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCC--------CHHHHHHHHHhCCceeeeEEEECC---------
Confidence 999999999853222357899999999999999999997 688899999999999999998851
Q ss_pred CCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhhh
Q 018367 240 FDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGT 319 (357)
Q Consensus 240 ~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~k 319 (357)
+ ++|+|.+|+||||+|++..+...+ +..|++.|++.+++
T Consensus 127 ----------------------~-----------~~f~n~~~~G~da~v~~~~~~~~k--------~~~G~~aY~~~~l~ 165 (293)
T TIGR03702 127 ----------------------K-----------HYFLNMATGGFGTRVTTETSEKLK--------KALGGAAYLITGLT 165 (293)
T ss_pred ----------------------c-----------cEEEEEeecccchHhhhhhhHHHH--------hccchHHHHHHHHH
Confidence 0 379999999999999999877543 35799999999999
Q ss_pred c
Q 018367 320 Q 320 (357)
Q Consensus 320 ~ 320 (357)
.
T Consensus 166 ~ 166 (293)
T TIGR03702 166 R 166 (293)
T ss_pred H
Confidence 8
No 11
>PRK13054 lipid kinase; Reviewed
Probab=99.97 E-value=1.3e-29 Score=245.09 Aligned_cols=186 Identities=18% Similarity=0.188 Sum_probs=136.0
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 80 PSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 80 ~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~-~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
+++++++|+||++++ .+.+..+.+.|....+ +.+.. +.++++.+ +.+.+. ..+.+.||++||
T Consensus 2 ~~~~~~~i~N~~~~~---~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~-~a~~~~------------~~~~d~vvv~GG 65 (300)
T PRK13054 2 TFPKSLLILNGKSAG---NEELREAVGLLREEGHTLHVRVTWEKGDAAR-YVEEAL------------ALGVATVIAGGG 65 (300)
T ss_pred CCceEEEEECCCccc---hHHHHHHHHHHHHcCCEEEEEEecCCCcHHH-HHHHHH------------HcCCCEEEEECC
Confidence 467899999999763 3455555666654332 33222 34566543 222211 123568999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCC
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKE 237 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~ 237 (357)
|||||+|+|+|.+.....++||||||+||||||||+||+|. +++++++.|.++++++||+++++-
T Consensus 66 DGTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~--------~~~~a~~~i~~g~~~~iDlg~v~~------- 130 (300)
T PRK13054 66 DGTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPL--------EPDKALKLAIEGRAQPIDLARVND------- 130 (300)
T ss_pred ccHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCC--------CHHHHHHHHHhCCceEEEEEEEcC-------
Confidence 99999999999864223468999999999999999999997 688899999999999999998851
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHh
Q 018367 238 GSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLA 317 (357)
Q Consensus 238 g~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g 317 (357)
+ ++|+|.+|+||||+|++..+...+ +..|++.|++.+
T Consensus 131 --------------------------------~---~~f~n~~~~G~~a~v~~~~~~~~k--------~~~G~~~Y~~~~ 167 (300)
T PRK13054 131 --------------------------------R---TYFINMATGGFGTRVTTETPEKLK--------AALGGVAYLIHG 167 (300)
T ss_pred --------------------------------c---eEEEEEeecchhHHHHHhhHHHHH--------hccchHHHHHHH
Confidence 0 279999999999999998866432 357999999999
Q ss_pred hhccccccccCCCcccCccceEEEEEeccCCCeE
Q 018367 318 GTQGWFLAPLLHPSSRNIAQMAKVKIMKKQGQWE 351 (357)
Q Consensus 318 ~k~~~~~~~l~~~~~~~~~~~~~v~vd~~~~~~~ 351 (357)
++. +++ .+. ..++|+.|++ .|+
T Consensus 168 l~~------l~~--~~~--~~~~i~~d~~--~~~ 189 (300)
T PRK13054 168 LMR------MDT--LKP--DRCEIRGPDF--HWQ 189 (300)
T ss_pred HHH------Hhh--CCC--eEEEEEeCCc--EEE
Confidence 998 653 222 4567777764 454
No 12
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=99.96 E-value=3.4e-29 Score=240.55 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=139.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~-~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDG 159 (357)
+++++|+||.||++++.+.+.++++.|....+ +.+.. +.++++.+.+.... ..+.+.||++||||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~d~ivv~GGDG 68 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEAR-------------KFGVDTVIAGGGDG 68 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHH-------------hcCCCEEEEECCCC
Confidence 68999999999999989999999988865433 22211 23334332111111 02356899999999
Q ss_pred HHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCCCC
Q 018367 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGS 239 (357)
Q Consensus 160 TVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~g~ 239 (357)
|+++|+|++... ...+|||+||+||+|||||+||++. ++.++++.+.+++.+++|+++++-
T Consensus 69 Tl~~v~~~l~~~--~~~~~lgiiP~Gt~N~~a~~l~i~~--------~~~~~~~~l~~~~~~~~Dlg~v~~--------- 129 (293)
T TIGR00147 69 TINEVVNALIQL--DDIPALGILPLGTANDFARSLGIPE--------DLDKAAKLVIAGDARAIDMGQVNK--------- 129 (293)
T ss_pred hHHHHHHHHhcC--CCCCcEEEEcCcCHHHHHHHcCCCC--------CHHHHHHHHHcCCceEEEEEEECC---------
Confidence 999999999753 2357899999999999999999987 688899999999999999998851
Q ss_pred CCCCCCCCCCccccccccccccccccccCcceeccc-eeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhh
Q 018367 240 FDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGG-FWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (357)
Q Consensus 240 ~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~-F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (357)
++ |+|++|+|+||++++.++...+ +..|+++|++.++
T Consensus 130 ----------------------------------~~~fln~~g~G~~a~v~~~~~~~~k--------~~~g~~~Y~~~~l 167 (293)
T TIGR00147 130 ----------------------------------QYCFINMAGGGFGTEITTETPEKLK--------AALGSLSYILSGL 167 (293)
T ss_pred ----------------------------------eEEEEEEEeechhhHhHhhCCHHHH--------hccchHHHHHHHH
Confidence 37 9999999999999988865432 3568999999999
Q ss_pred hccccccccCCCcccCccceEEEEEeccCCCeE
Q 018367 319 TQGWFLAPLLHPSSRNIAQMAKVKIMKKQGQWE 351 (357)
Q Consensus 319 k~~~~~~~l~~~~~~~~~~~~~v~vd~~~~~~~ 351 (357)
+. +.. .+. ..+++++|++ .|+
T Consensus 168 ~~------l~~--~~~--~~~~i~~d~~--~~~ 188 (293)
T TIGR00147 168 MR------MDT--LQP--FRCEIRGEGE--HWQ 188 (293)
T ss_pred HH------Hhh--CCC--eeEEEEECCe--EEE
Confidence 98 642 222 5678888885 554
No 13
>PRK12361 hypothetical protein; Provisional
Probab=99.96 E-value=3.8e-29 Score=260.15 Aligned_cols=183 Identities=17% Similarity=0.151 Sum_probs=141.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccCcEEEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~-~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDG 159 (357)
+++++||+||+||++++.+.++++++.|.+..-+.+.. +.++++.+ +.+.+. ..+.+.|||+||||
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~-la~~~~------------~~~~d~Viv~GGDG 308 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEA-LAKQAR------------KAGADIVIACGGDG 308 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHH-HHHHHH------------hcCCCEEEEECCCc
Confidence 47899999999999999999999999887531122211 23344432 222211 02346899999999
Q ss_pred HHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhc-CCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCCC
Q 018367 160 TASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSF-GWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEG 238 (357)
Q Consensus 160 TVneVln~L~~~~~~~~~plgIIP~GTGNDfARsL-G~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~g 238 (357)
|||||+|++.+ .++||||||+||||||||+| |++.. ..+++++++.|.+|..+++|++.++-
T Consensus 309 Tl~ev~~~l~~----~~~~lgiiP~GTgNdfAr~L~gi~~~-----~~~~~~a~~~i~~g~~~~iD~g~vn~-------- 371 (547)
T PRK12361 309 TVTEVASELVN----TDITLGIIPLGTANALSHALFGLGSK-----LIPVEQACDNIIQGHTQRIDTARCND-------- 371 (547)
T ss_pred HHHHHHHHHhc----CCCCEEEecCCchhHHHHHhcCCCCC-----CccHHHHHHHHHhCCCeEEEEEEEcC--------
Confidence 99999999975 46899999999999999999 99841 02578899999999999999998840
Q ss_pred CCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhh
Q 018367 239 SFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAG 318 (357)
Q Consensus 239 ~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~ 318 (357)
++|+|++|+|+||+|+...++.++ +..|++.|+..++
T Consensus 372 -----------------------------------~~fln~agiG~da~v~~~~~~~~k--------~~~G~laY~~~~~ 408 (547)
T PRK12361 372 -----------------------------------RLMLLLVGIGFEQKMIESADRERK--------NALGQLAYLDGLW 408 (547)
T ss_pred -----------------------------------eEEEEEEeechhHHHHHhccHHHH--------hccCHHHHHHHHH
Confidence 379999999999999998877654 3569999999999
Q ss_pred hccccccccCCCcccCccceEEEEEecc
Q 018367 319 TQGWFLAPLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 319 k~~~~~~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
+. +.+. + ...++|++|++
T Consensus 409 ~~------l~~~--~--~~~l~i~~dg~ 426 (547)
T PRK12361 409 RA------VNEN--E--TLTLTVTLDDA 426 (547)
T ss_pred HH------hhcC--C--CeeEEEEECCC
Confidence 98 7642 2 26788999985
No 14
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=99.95 E-value=1.1e-27 Score=245.64 Aligned_cols=173 Identities=18% Similarity=0.225 Sum_probs=130.1
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHH-HHHHhhccCcE-EEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEE
Q 018367 78 LIPSCPVLVFINSKSGGQLGGKLLL-TYRSLLNENQV-IDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIV 154 (357)
Q Consensus 78 ~~~~~~vlvIvNP~SG~~~g~~~~~-~~~~~L~~~~V-~~l~~-~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv 154 (357)
..++++++|||||.||++++.++|. .++++|....+ +++.. +.++++.+ +.+.+. ....+.||+
T Consensus 108 ~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~-la~~~~------------~~~~D~VV~ 174 (481)
T PLN02958 108 LGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKE-VVRTMD------------LSKYDGIVC 174 (481)
T ss_pred ccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHH-HHHHhh------------hcCCCEEEE
Confidence 3467899999999999999988865 68878875443 33222 35677654 222221 124578999
Q ss_pred EcCchHHHHHHHHHHhCCC---CCCCCEEEEeCCCCcchhhhc----CCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEE
Q 018367 155 AGGDGTASWLLGVVSDLKL---PHSPPVATVPLGTGNNIPFSF----GWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWH 227 (357)
Q Consensus 155 ~GGDGTVneVln~L~~~~~---~~~~plgIIP~GTGNDfARsL----G~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~ 227 (357)
+|||||||||+|+|..... ..++||||||+||||||||+| |+|. ++.+++..|..|..+++|+++
T Consensus 175 vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~--------~~~~A~~~I~~g~~~~vDlg~ 246 (481)
T PLN02958 175 VSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPC--------SATNAVLAIIRGHKCSLDVAT 246 (481)
T ss_pred EcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCc--------CHHHHHHHHHcCCceEEeEEE
Confidence 9999999999999975311 236899999999999999999 8887 688889999999999999999
Q ss_pred EeeeecCCCCCCCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccc
Q 018367 228 ILMRMKAPKEGSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQL 307 (357)
Q Consensus 228 v~~~~~~~~~g~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl 307 (357)
|+-. + .. .+|+|.+|+||||+|.... .+ +|+
T Consensus 247 v~~~------------------------------~-------~~--~f~vn~~g~GfdAdV~~~s--e~--------kr~ 277 (481)
T PLN02958 247 ILQG------------------------------E-------TK--FFSVLMLAWGLVADIDIES--EK--------YRW 277 (481)
T ss_pred EEcC------------------------------C-------ce--EEEEEeeeeehhhhhhccc--cc--------ccc
Confidence 8510 0 00 2358999999999996432 11 345
Q ss_pred cchHHHHHHhhhc
Q 018367 308 VNQSTYLKLAGTQ 320 (357)
Q Consensus 308 ~nkl~Y~~~g~k~ 320 (357)
.|++.|.+.+++.
T Consensus 278 lG~lrY~~~~l~~ 290 (481)
T PLN02958 278 MGSARLDFYGLQR 290 (481)
T ss_pred cchHHHHHHHHHH
Confidence 7999999999998
No 15
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=99.94 E-value=9.7e-29 Score=255.69 Aligned_cols=134 Identities=34% Similarity=0.647 Sum_probs=113.8
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 78 LIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 78 ~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
..-..|++||+|.+||..+|.+++++++.+|++.|||++...+|.-++. ++..+ +..+|+||||
T Consensus 191 ~~~~spllv~insksgd~qg~~~lrkfkq~lnp~qVfdll~~gp~~gL~-~f~~~---------------d~friLvcgg 254 (1099)
T KOG1170|consen 191 GPCGSPLLVFINSKSGDSQGQRFLRKFKQILNPIQVFDLIAGGPDFGLT-FFSHF---------------ESFRILVCGG 254 (1099)
T ss_pred CCCCCceeEeecccCCCchhHHHHHhhhhhcCHHHHHHHHccCcchhhh-hhhcc---------------cceEEEEecC
Confidence 3344899999999999999999999999999999999988778877765 33332 4578999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEe
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHIL 229 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~ 229 (357)
||+|.||+..+..+.+..+..++++|+|||||+||.|||+..++.. .-+.++++.+.++.++.+|.|.+.
T Consensus 255 dGsv~wvls~~ds~~lh~kcql~vlplgtgndlarvlgwg~a~~dd--t~~p~il~~~eRastkmldrwsvm 324 (1099)
T KOG1170|consen 255 DGSVGWVLSAIDRLNLHSKCQLAVLPLGTGNDLARVLGWGHAFYDD--TLLPQILRTMERASTKMLDRWSVM 324 (1099)
T ss_pred CCCCcchHHHHHhccchhhcccccccCCChHHHHHHhcccccCchh--hccHHHHHHHHhhhhhhhhcchhh
Confidence 9999999999988877889999999999999999999999765442 234478888899999999999874
No 16
>PLN02204 diacylglycerol kinase
Probab=99.94 E-value=9.4e-26 Score=233.35 Aligned_cols=200 Identities=14% Similarity=0.133 Sum_probs=145.6
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-E--EeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEE
Q 018367 78 LIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-I--DLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIV 154 (357)
Q Consensus 78 ~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~--~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv 154 (357)
..++++++|||||.||++++.+.|+++.++|....+ + ..| +.++++.+ +...+.++ +....+.||+
T Consensus 156 ~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T-~~aghA~d-~~~~~~~~---------~l~~~D~VVa 224 (601)
T PLN02204 156 VGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVT-ERAGHAFD-VMASISNK---------ELKSYDGVIA 224 (601)
T ss_pred cCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEe-cCcchHHH-HHHHHhhh---------hccCCCEEEE
Confidence 456789999999999999999999999999875433 2 233 35677654 22222110 0124578999
Q ss_pred EcCchHHHHHHHHHHhCC--------------------------------------------------------------
Q 018367 155 AGGDGTASWLLGVVSDLK-------------------------------------------------------------- 172 (357)
Q Consensus 155 ~GGDGTVneVln~L~~~~-------------------------------------------------------------- 172 (357)
||||||+|||+|+|...+
T Consensus 225 VGGDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 304 (601)
T PLN02204 225 VGGDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEG 304 (601)
T ss_pred EcCccHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999996311
Q ss_pred --------CCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeeeecCCCCCCCCCCC
Q 018367 173 --------LPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMRMKAPKEGSFDPIA 244 (357)
Q Consensus 173 --------~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~~~~~~~g~~~~~~ 244 (357)
...+++|||||+|||||||+++..+. ++..++..|..|+.+.+|+++|+-.....
T Consensus 305 ~~~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g~~--------dp~taa~~Ii~G~~~~lDig~V~~~~~~~--------- 367 (601)
T PLN02204 305 DQDSDFPFPNERFRFGIIPAGSTDAIVMCTTGER--------DPVTSALHIILGRRVCLDIAQVVRWKTTS--------- 367 (601)
T ss_pred cccccccccCCCceEEEECCccHHHHHHHccCCC--------CHHHHHHHHHhCCCeEeeEEEEecccccc---------
Confidence 01357899999999999999987766 68888999999999999999996321000
Q ss_pred CCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhhhccccc
Q 018367 245 PLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQGWFL 324 (357)
Q Consensus 245 ~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~k~~~~~ 324 (357)
.+ .. ..+.+||+|.+|+||||+|+..-++ .|++|++.|.+.+++.
T Consensus 368 -----~~---------~~-------~~~~ryf~s~ag~Gf~gdVi~esek----------~R~mG~~rY~~~g~k~---- 412 (601)
T PLN02204 368 -----TS---------EI-------EPYVRYAASFAGYGFYGDVISESEK----------YRWMGPKRYDYAGTKV---- 412 (601)
T ss_pred -----cc---------cc-------cccceEEEEEeecchHHHHHHHhhh----------hcccchHHHHHHHHHH----
Confidence 00 00 0112699999999999999877322 3467999999999999
Q ss_pred cccCCCcccCccceEEEEEecc
Q 018367 325 APLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 325 ~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
++..++ +.++|.+|+.
T Consensus 413 --~~~~r~----y~~~V~~d~~ 428 (601)
T PLN02204 413 --FLKHRS----YEAEVAYLET 428 (601)
T ss_pred --HHhCCC----ceEEEEECCe
Confidence 763222 6788988885
No 17
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.91 E-value=4.8e-24 Score=181.98 Aligned_cols=122 Identities=25% Similarity=0.311 Sum_probs=82.3
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhcc----CcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccC-cEEEEEcC
Q 018367 83 PVLVFINSKSGGQLGGKLLLTYRSLLNE----NQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKR-LRLIVAGG 157 (357)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~~~~~L~~----~~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~-~~VVv~GG 157 (357)
+++||+||+||++++. ++.+++.|.. .+++.++. +++.. .+.. ... .... +.||++||
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~~--~~~~~-~~~~-~~~-----------~~~~~~~ivv~GG 63 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETES--AGHAE-ALAR-ILA-----------LDDYPDVIVVVGG 63 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEESS--TTHHH-HHHH-HHH-----------HTTS-SEEEEEES
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEec--cchHH-HHHH-HHh-----------hccCccEEEEEcC
Confidence 5899999999999998 4666666643 23343332 23322 1222 111 1233 68999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHH-HHHHHHcCCeeeEEEEEEe
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLS-FLEQVKNAKEMQIDSWHIL 229 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~-~l~~I~~~~~~~iD~~~v~ 229 (357)
|||||++++++.+......+|||+||+||||||||+||++. +... .+..+..+..+++|+++|+
T Consensus 64 DGTl~~vv~~l~~~~~~~~~~l~iiP~GT~N~~ar~lg~~~--------~~~~~a~~~~~~~~~~~~d~~~v~ 128 (130)
T PF00781_consen 64 DGTLNEVVNGLMGSDREDKPPLGIIPAGTGNDFARSLGIPS--------DPEANAALLIILGRVRKIDVGKVN 128 (130)
T ss_dssp HHHHHHHHHHHCTSTSSS--EEEEEE-SSS-HHHHHTT--S--------SHHH-HHHHHHHSEEEEEEEEEET
T ss_pred ccHHHHHHHHHhhcCCCccceEEEecCCChhHHHHHcCCCC--------CcHHHHHHHHHhCCCcEeEEEEeC
Confidence 99999999999876433467999999999999999999998 3444 5555566777799999885
No 18
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.89 E-value=1.1e-22 Score=173.06 Aligned_cols=100 Identities=49% Similarity=0.874 Sum_probs=76.2
Q ss_pred EEEEcCCCCCCChhhHHHHHHHhhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHH
Q 018367 85 LVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWL 164 (357)
Q Consensus 85 lvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneV 164 (357)
+||+||+||++++.+++..++..+...+++.+......++.. + ++ +....+.||++|||||+|+|
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~~~~~~~~~~-~---~~-----------~~~~~d~vvv~GGDGTi~~v 65 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLTKKGPAAALV-I---FR-----------DLPKFDRVLVCGGDGTVGWV 65 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEecCChHHHHH-H---Hh-----------hcCcCCEEEEEccccHHHHH
Confidence 489999999999999999999988877776554333333322 1 11 11234589999999999999
Q ss_pred HHHHHhCCCC-CCCCEEEEeCCCCcchhhhcCCCCC
Q 018367 165 LGVVSDLKLP-HSPPVATVPLGTGNNIPFSFGWGKK 199 (357)
Q Consensus 165 ln~L~~~~~~-~~~plgIIP~GTGNDfARsLG~~~~ 199 (357)
+|++.+.... ..+|||+||+||||||||+|||+.+
T Consensus 66 vn~l~~~~~~~~~~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 66 LNALDKRELPLPEPPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred HHHHHhcccccCCCcEEEeCCCChhHHHHHcCCCCC
Confidence 9999864321 1289999999999999999999985
No 19
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-18 Score=178.48 Aligned_cols=179 Identities=22% Similarity=0.234 Sum_probs=130.6
Q ss_pred ccCCCCCcEEEEEcCCCCCCChhhHHHH-HHHhhccCcE-EEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEE
Q 018367 76 SSLIPSCPVLVFINSKSGGQLGGKLLLT-YRSLLNENQV-IDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRL 152 (357)
Q Consensus 76 ~~~~~~~~vlvIvNP~SG~~~g~~~~~~-~~~~L~~~~V-~~l~~-~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~V 152 (357)
....+.++++||+||.+|.|++.++|.. ++.+|....+ |++.. +.|.||.+ +.+.+. ....+.|
T Consensus 174 ~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HAre-i~rt~d------------l~kyDgI 240 (579)
T KOG1116|consen 174 DSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHARE-IVRTLD------------LGKYDGI 240 (579)
T ss_pred cccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHH-HHHhhh------------ccccceE
Confidence 3344668999999999999999998765 5566765444 44332 47888865 444431 1356789
Q ss_pred EEEcCchHHHHHHHHHHhCC---CCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEe
Q 018367 153 IVAGGDGTASWLLGVVSDLK---LPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHIL 229 (357)
Q Consensus 153 Vv~GGDGTVneVln~L~~~~---~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~ 229 (357)
|++||||+++||||||++-. .....|||+||+||||+||+++.|..++ + -+..+.-.|.+|....+|+..+.
T Consensus 241 v~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~---~--~~~~a~l~iirg~~t~~dv~~v~ 315 (579)
T KOG1116|consen 241 VCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP---D--LPLLATLLIIRGRLTPMDVSVVE 315 (579)
T ss_pred EEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCc---c--cchHHHHHHHccCCCchheeehh
Confidence 99999999999999998632 2367999999999999999999998742 0 13445566778999999999886
Q ss_pred eeecCCCCCCCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhhcCcccccccccc
Q 018367 230 MRMKAPKEGSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVN 309 (357)
Q Consensus 230 ~~~~~~~~g~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~n 309 (357)
.... + +.++++..+-||-|+|-..-.+.| ++|
T Consensus 316 ~~~~----------------------------~----------~~fSfLs~~wGlIADiDI~SEk~R----------~mG 347 (579)
T KOG1116|consen 316 YAGK----------------------------D----------RHFSFLSAAWGLIADVDIESEKYR----------WMG 347 (579)
T ss_pred hccC----------------------------c----------ceEEEEeeeeeeEEecccchHHHH----------hhc
Confidence 4210 0 136789999999999976554443 457
Q ss_pred hHHHHHHhhhc
Q 018367 310 QSTYLKLAGTQ 320 (357)
Q Consensus 310 kl~Y~~~g~k~ 320 (357)
.+.|.+.++..
T Consensus 348 ~~Rf~lg~~~r 358 (579)
T KOG1116|consen 348 PARFTLGAFLR 358 (579)
T ss_pred chhhhHHHHHH
Confidence 77787777776
No 20
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.60 E-value=2.5e-16 Score=139.91 Aligned_cols=65 Identities=34% Similarity=0.597 Sum_probs=60.4
Q ss_pred eeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhhhccccccccCCCcccCccceEEEEEecc
Q 018367 276 FWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQGWFLAPLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 276 F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~k~~~~~~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
|+||||||+||+|+++||+.|+++|++|++|+.||++|+..|+++ ++..+++++.+.+++++|++
T Consensus 2 ~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~------~~~~~~~~~~~~i~l~~dg~ 66 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKA------LFQRSCKNLPKKIELEVDGK 66 (161)
T ss_pred eEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHH------HHhchhcCchhhcccccCCe
Confidence 899999999999999999999999999999999999999999999 55566778888999998875
No 21
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.32 E-value=4.7e-12 Score=124.98 Aligned_cols=178 Identities=16% Similarity=0.171 Sum_probs=121.6
Q ss_pred ccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE---EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEE
Q 018367 76 SSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV---IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRL 152 (357)
Q Consensus 76 ~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V---~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~V 152 (357)
....+++.++|||||.+|+|+|.++|+.+.+++--..+ +-+|+ ...++.+.++ .+. -.|+...+-|
T Consensus 153 k~~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTE-rAnhA~d~~~-ei~---------~~~~~~yDGi 221 (516)
T KOG1115|consen 153 KEVERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTE-RANHAFDVMA-EIQ---------NKELHTYDGI 221 (516)
T ss_pred HHhcCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEc-cccchhhhhh-hCC---------HhhhhhcccE
Confidence 33557789999999999999999999998876532112 22343 4455543221 111 0123345779
Q ss_pred EEEcCchHHHHHHHHHHh-C------C--------CCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHc
Q 018367 153 IVAGGDGTASWLLGVVSD-L------K--------LPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKN 217 (357)
Q Consensus 153 Vv~GGDGTVneVln~L~~-~------~--------~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~ 217 (357)
|++||||-.||+++|+.- . + ....+-+||||+|+.|-..-+-.=..+ ...+++. |.-
T Consensus 222 v~VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~gt~D-------~~TSAlH-I~l 293 (516)
T KOG1115|consen 222 VAVGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTGTRD-------PVTSALH-IIL 293 (516)
T ss_pred EEecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEeccCCc-------cccceee-eEe
Confidence 999999999999999742 1 1 125677999999999988766532221 2333444 455
Q ss_pred CCeeeEEEEEEeeeecCCCCCCCCCCCCCCCCccccccccccccccccccCcceeccceeeeeccchhHHHHHHHHhhhh
Q 018367 218 AKEMQIDSWHILMRMKAPKEGSFDPIAPLELPHSLHAFHRVSQKDKLNVEGHHTFRGGFWNYFSMGMDAQVSYAFHSERK 297 (357)
Q Consensus 218 ~~~~~iD~~~v~~~~~~~~~g~~~~~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~~~F~NyfsIG~DA~Va~~f~~~R~ 297 (357)
|+...+|+..|.-. . ..-||-.|.+|.||-++|...-.+.
T Consensus 294 G~~l~vDVctVht~------------------------------~--------kLiRysaSa~gYGFyGDvl~dSEKY-- 333 (516)
T KOG1115|consen 294 GRKLFVDVCTVHTI------------------------------E--------KLIRYSASAAGYGFYGDVLSDSEKY-- 333 (516)
T ss_pred ccceeeeeeeeeec------------------------------c--------hheeeehhhhcccccchhhhhhhhh--
Confidence 88999999888511 0 1115778899999999998665444
Q ss_pred cCcccccccccchHHHHHHhhhc
Q 018367 298 LHPEKFQNQLVNQSTYLKLAGTQ 320 (357)
Q Consensus 298 ~~p~~f~~rl~nkl~Y~~~g~k~ 320 (357)
|+.|...|=+.|+|+
T Consensus 334 --------RWmGp~RYDfsglKt 348 (516)
T KOG1115|consen 334 --------RWMGPKRYDFSGLKT 348 (516)
T ss_pred --------hccCchhhhhHHHHH
Confidence 567788999999998
No 22
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.01 E-value=2e-09 Score=106.42 Aligned_cols=133 Identities=19% Similarity=0.119 Sum_probs=81.3
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHH-HHHHhhc--cCcEEEeec-cChhhHHHHHHHHHHHhhhccchhhhhhccCcEEE
Q 018367 78 LIPSCPVLVFINSKSGGQLGGKLLL-TYRSLLN--ENQVIDLGE-KAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLI 153 (357)
Q Consensus 78 ~~~~~~vlvIvNP~SG~~~g~~~~~-~~~~~L~--~~~V~~l~~-~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VV 153 (357)
...+++++|++||.+..+.....+. ....+|+ ..+| ++.. ...+++.. +..+++ ...+.|+
T Consensus 57 ~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V-~Ivktd~~gqak~-l~e~~~-------------t~~Dii~ 121 (535)
T KOG4435|consen 57 ETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQV-DIVKTDNQGQAKA-LAEAVD-------------TQEDIIY 121 (535)
T ss_pred ccccceEEEEechhhccchhhhhhhcccchheeeccceE-EEEecCcHHHHHH-HHHHhc-------------cCCCeEE
Confidence 4466899999999998765544443 3445555 3344 2222 23333321 111111 1347899
Q ss_pred EEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCe---eeEEEE
Q 018367 154 VAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKE---MQIDSW 226 (357)
Q Consensus 154 v~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~---~~iD~~ 226 (357)
|+|||||++|||.|+++.+ ....|++++|.|--|-...+.-...-..+++.+.+-+++..+.+++. ..+|+-
T Consensus 122 VaGGDGT~~eVVTGi~Rrr-~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~ 196 (535)
T KOG4435|consen 122 VAGGDGTIGEVVTGIFRRR-KAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVT 196 (535)
T ss_pred EecCCCcHHHhhHHHHhcc-cccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEec
Confidence 9999999999999998753 46789999999988766555432221223344455555666666665 556653
No 23
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=98.75 E-value=2.7e-09 Score=94.50 Aligned_cols=65 Identities=29% Similarity=0.593 Sum_probs=55.4
Q ss_pred eeeeeccchhHHHHHHHHhhhhcCcccccccccchHHHHHHhhhccccccccCCCcccCccceEEEEEecc
Q 018367 276 FWNYFSMGMDAQVSYAFHSERKLHPEKFQNQLVNQSTYLKLAGTQGWFLAPLLHPSSRNIAQMAKVKIMKK 346 (357)
Q Consensus 276 F~NyfsIG~DA~Va~~f~~~R~~~p~~f~~rl~nkl~Y~~~g~k~~~~~~~l~~~~~~~~~~~~~v~vd~~ 346 (357)
|+||+||||||+|++.|+..|+++|.++++++.|+++|++.+++. ++.+.++.....++|++|++
T Consensus 2 ~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~------l~~~~~~~~~~~~~i~~dg~ 66 (160)
T smart00045 2 MNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKD------LFFRTCKDLHERIELECDGV 66 (160)
T ss_pred ccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHH------hhhccccchhhceEEEECCE
Confidence 899999999999999999999999988888889999999999998 64334444345788999885
No 24
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.41 E-value=1.5e-06 Score=83.94 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHH
Q 018367 83 PVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTA 161 (357)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTV 161 (357)
++.+++|+ |...+.++++++.+.|....+ +.+........-......+.. +. ..+.+.||++|||||+
T Consensus 2 ~v~iv~~~--~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~-------~~--~~~~d~vi~iGGDGTl 70 (277)
T PRK03708 2 RFGIVARR--DKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLP-------LE--EMDVDFIIAIGGDGTI 70 (277)
T ss_pred EEEEEecC--CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccc-------cc--ccCCCEEEEEeCcHHH
Confidence 57788787 445777888999888865432 222210000000000000000 00 0134689999999999
Q ss_pred HHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeee
Q 018367 162 SWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQ 222 (357)
Q Consensus 162 neVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~ 222 (357)
.++++ +.. ..+||..||.||. +|...+. +. ++.++++.+.+|...-
T Consensus 71 L~a~~-~~~----~~~pi~gIn~G~l-GFl~~~~-~~--------~~~~~l~~i~~g~~~~ 116 (277)
T PRK03708 71 LRIEH-KTK----KDIPILGINMGTL-GFLTEVE-PE--------ETFFALSRLLEGDYFI 116 (277)
T ss_pred HHHHH-hcC----CCCeEEEEeCCCC-CccccCC-HH--------HHHHHHHHHHcCCceE
Confidence 99999 654 4789999999999 8888876 32 6889999999987543
No 25
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.27 E-value=6.8e-06 Score=80.40 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=74.4
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeeccCh-hhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 80 PSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAP-DKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 80 ~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~~p-~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
..+++++|+|| |.....+.+..+.+.|....+ +.+....+ ........ +. . ....+.||++||
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~---~~-------~---~~~~d~vi~~GG 66 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFL---AS-------A---SELIDLAIVLGG 66 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchh---hc-------c---ccCcCEEEEECC
Confidence 35689999999 555666778888877754332 11211111 11111000 00 0 113468999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeC-CCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeee
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPL-GTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMR 231 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~-GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~ 231 (357)
|||+.++++.+.. ..+|+..|.+ |+-.=|+..-... .+ .++++.+.+|+..--.+..+.+.
T Consensus 67 DGT~l~~~~~~~~----~~~pv~gin~~G~lGFL~~~~~~~--------~~-~~~l~~i~~g~~~i~~r~~L~~~ 128 (305)
T PRK02645 67 DGTVLAAARHLAP----HDIPILSVNVGGHLGFLTHPRDLL--------QD-ESVWDRLQEDRYAIERRMMLQAR 128 (305)
T ss_pred cHHHHHHHHHhcc----CCCCEEEEecCCcceEecCchhhc--------ch-HHHHHHHHcCCceEEEeeEEEEE
Confidence 9999999998864 4688999998 7655454321101 13 67899999998665555555444
No 26
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.86 E-value=0.00012 Score=71.35 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=75.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhh-ccCcEEEEEcCc
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEI-EKRLRLIVAGGD 158 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~-~~~~~VVv~GGD 158 (357)
.+++.+|.|+.. ....++...+.+.|....+ +.+.. .....+. .. ... . ..+ .+. .+.+.||++|||
T Consensus 5 ~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~-~~~~~~~-~~-~~~---~--~~~-~~~~~~~d~vi~lGGD 73 (292)
T PRK03378 5 FKCIGIVGHPRH--PTALTTHEMLYHWLTSKGYEVIVEQ-QIAHELQ-LK-NVK---T--GTL-AEIGQQADLAIVVGGD 73 (292)
T ss_pred CCEEEEEEeCCC--HHHHHHHHHHHHHHHHCCCEEEEec-chhhhcC-cc-ccc---c--cch-hhcCCCCCEEEEECCc
Confidence 466899988754 5667778888887764432 22221 1111000 00 000 0 000 001 134689999999
Q ss_pred hHHHHHHHHHHhCCCCCCCCEEEEeCCCCc-chhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEee
Q 018367 159 GTASWLLGVVSDLKLPHSPPVATVPLGTGN-NIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (357)
Q Consensus 159 GTVneVln~L~~~~~~~~~plgIIP~GTGN-DfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~ 230 (357)
||+..++..+... .+.|+|.++|+ +|...+. + +++.++++.+.+|...--.+..+..
T Consensus 74 GT~L~aa~~~~~~------~~Pilgin~G~lGFl~~~~-~--------~~~~~~l~~i~~g~~~i~~r~~L~~ 131 (292)
T PRK03378 74 GNMLGAARVLARY------DIKVIGINRGNLGFLTDLD-P--------DNALQQLSDVLEGHYISEKRFLLEA 131 (292)
T ss_pred HHHHHHHHHhcCC------CCeEEEEECCCCCcccccC-H--------HHHHHHHHHHHcCCceEEEEEEEEE
Confidence 9999999877542 25688889999 8877765 2 2788999999998865444444443
No 27
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.64 E-value=0.00049 Score=67.90 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=42.4
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchh-hhcCCCCCCCCCchHHHHHHHHHHHcC
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP-FSFGWGKKNPNTDQQAVLSFLEQVKNA 218 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfA-RsLG~~~~~~~~~~~~~~~~l~~I~~~ 218 (357)
-+.|+.+|||||...|++++. .++|+-=||.||-|-++ ..+. |. +...++..+.++
T Consensus 101 VdlIvfaGGDGTarDVa~av~-----~~vPvLGipaGvk~~SgvfA~~-P~--------~aa~l~~~~lkg 157 (355)
T COG3199 101 VDLIVFAGGDGTARDVAEAVG-----ADVPVLGIPAGVKNYSGVFALS-PE--------DAARLLGAFLKG 157 (355)
T ss_pred ceEEEEeCCCccHHHHHhhcc-----CCCceEeeccccceeccccccC-hH--------HHHHHHHHHhcc
Confidence 457999999999999999983 36788889999998775 3321 32 566667777766
No 28
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.38 E-value=0.0028 Score=61.90 Aligned_cols=123 Identities=19% Similarity=0.185 Sum_probs=71.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeecc-C---hhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEE
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEK-A---PDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVA 155 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~-~---p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~ 155 (357)
++++.+|+|+.. ..+.++++.+.+.|....+ +.+... . +.+... . ...+ .+ ....+.||++
T Consensus 4 ~~~v~iv~~~~k--~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~-~-~~~~-------~~---~~~~d~vi~~ 69 (295)
T PRK01231 4 FRNIGLIGRLGS--SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQ-T-VSRK-------LL---GEVCDLVIVV 69 (295)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccc-c-cchh-------hc---ccCCCEEEEE
Confidence 346889999766 4667788888887754332 222111 1 110000 0 0000 00 1134679999
Q ss_pred cCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeee
Q 018367 156 GGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMR 231 (357)
Q Consensus 156 GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~ 231 (357)
|||||+..++..+.. ..+||--|.+|+ ||.-.. .+.+++.++++.+.+|...--.+..+...
T Consensus 70 GGDGt~l~~~~~~~~----~~~Pvlgin~G~-------lGFl~~---~~~~~~~~~l~~~~~g~~~i~~r~~L~~~ 131 (295)
T PRK01231 70 GGDGSLLGAARALAR----HNVPVLGINRGR-------LGFLTD---IRPDELEFKLAEVLDGHYQEEERFLLEAE 131 (295)
T ss_pred eCcHHHHHHHHHhcC----CCCCEEEEeCCc-------cccccc---CCHHHHHHHHHHHHcCCceEEEEEEEEEE
Confidence 999999999987753 356665577764 333221 12357889999999987554455555443
No 29
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.16 E-value=0.0019 Score=62.46 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=49.8
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEE
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWH 227 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~ 227 (357)
+.+.||++|||||+-.++..+.. ..+||--|+.||-+=|+ .+. .+++..+++.+.+++...-.+..
T Consensus 76 ~~D~ii~lGGDGT~L~~~~~~~~----~~~Pilgin~G~lgfl~-~~~---------~~~~~~~l~~~~~g~~~~~~r~~ 141 (285)
T PF01513_consen 76 GVDLIIVLGGDGTFLRAARLFGD----YDIPILGINTGTLGFLT-EFE---------PEDIEEALEKILAGEYSIEERMR 141 (285)
T ss_dssp CSSEEEEEESHHHHHHHHHHCTT----ST-EEEEEESSSSTSSS-SEE---------GCGHHHHHHHHHHTHCEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHhcc----CCCcEEeecCCCccccc-cCC---------HHHHHHHHHHHhcCCeEEEEeee
Confidence 55789999999999999887753 36888889999854333 332 22688889999887766555555
Q ss_pred Eeee
Q 018367 228 ILMR 231 (357)
Q Consensus 228 v~~~ 231 (357)
+...
T Consensus 142 l~~~ 145 (285)
T PF01513_consen 142 LEVS 145 (285)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 30
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.13 E-value=0.0076 Score=59.22 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=70.9
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeeccChhhHHHHHHHHH------HHhhhccchhhhhhccCcE
Q 018367 79 IPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTL------EKFKAAGDVFASEIEKRLR 151 (357)
Q Consensus 79 ~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~~p~~~~~~~~~~l------~~l~~~~~~lA~~~~~~~~ 151 (357)
.+++++.+|.|+.. ....++...+...|....+ +.+.... ...+..-.... ..+. ....+ ..+.+.
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~D~ 75 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAARRVAKQLGDAGIGVRVLDAE-AVDLGATHPAPDDFRAMEVVD-ADPDA---ADGCEL 75 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEeech-hhhhccccccccccccccccc-chhhc---ccCCCE
Confidence 45677999988744 5666788888887764432 1121111 11000000000 0000 00000 113468
Q ss_pred EEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEE
Q 018367 152 LIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWH 227 (357)
Q Consensus 152 VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~ 227 (357)
||++|||||+-.++..+.. ..+||--|.+|+- |.=.. ...+++.++++.+.+|...--.+-.
T Consensus 76 vi~lGGDGT~L~aar~~~~----~~~PilGIN~G~l-------GFL~~---~~~~~~~~~l~~i~~g~y~i~~R~~ 137 (306)
T PRK03372 76 VLVLGGDGTILRAAELARA----ADVPVLGVNLGHV-------GFLAE---AEAEDLDEAVERVVDRDYRVEERMT 137 (306)
T ss_pred EEEEcCCHHHHHHHHHhcc----CCCcEEEEecCCC-------ceecc---CCHHHHHHHHHHHHcCCceEEEeee
Confidence 9999999999888877653 3567666888873 33221 1234788999999999865444333
No 31
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.02 E-value=0.0099 Score=57.88 Aligned_cols=125 Identities=16% Similarity=0.116 Sum_probs=70.7
Q ss_pred cCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEE
Q 018367 77 SLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVA 155 (357)
Q Consensus 77 ~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~ 155 (357)
++...+++.+|+||. . ...+++.++...|...++ +.+.. .....+.......+ .+ ..+.+.||++
T Consensus 6 ~~~~~~~i~ii~~~~--~-~~~~~~~~i~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~-------~~---~~~~Dlvi~i 71 (287)
T PRK14077 6 DHKNIKKIGLVTRPN--V-SLDKEILKLQKILSIYKVEILLEK-ESAEILDLPGYGLD-------EL---FKISDFLISL 71 (287)
T ss_pred ccccCCEEEEEeCCc--H-HHHHHHHHHHHHHHHCCCEEEEec-chhhhhcccccchh-------hc---ccCCCEEEEE
Confidence 344567799999986 3 677888888887765443 22221 11110000000000 00 1235689999
Q ss_pred cCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEe
Q 018367 156 GGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHIL 229 (357)
Q Consensus 156 GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~ 229 (357)
|||||+-.++..+.. ..+||--|-+|+ ||.=.. .+.+++.++++.+.+|+..--.+-.+.
T Consensus 72 GGDGT~L~aa~~~~~----~~~PilGIN~G~-------lGFLt~---~~~~~~~~~l~~i~~g~y~ie~r~~L~ 131 (287)
T PRK14077 72 GGDGTLISLCRKAAE----YDKFVLGIHAGH-------LGFLTD---ITVDEAEKFFQAFFQGEFEIEKPYMLS 131 (287)
T ss_pred CCCHHHHHHHHHhcC----CCCcEEEEeCCC-------cccCCc---CCHHHHHHHHHHHHcCCCeEEEEEEEE
Confidence 999999888776643 355644456665 443221 123578889999999875433333333
No 32
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=96.85 E-value=0.013 Score=57.02 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=70.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeeccChhhH-HHHHH-HHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKV-LHQLY-VTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~~p~~~-~~~~~-~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
.+.+.+|+|+.. ....+.+..+.+.|....+ +.+........ ..... ...+. + ....+.||++||
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~-------~---~~~~d~vi~~GG 72 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEE-------I---GARADLAVVLGG 72 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhH-------h---ccCCCEEEEECC
Confidence 456888888755 4666778888887754432 22221100000 00000 00000 0 013468999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEeee
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILMR 231 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~~ 231 (357)
|||+..++..+.. ..+|+-=|.+|+-.=|+ .+ ..+++.++|+.+.+|...--.+..+.+.
T Consensus 73 DGt~l~~~~~~~~----~~~pilGIn~G~lGFL~---~~-------~~~~~~~~l~~~~~g~~~i~~r~~L~~~ 132 (291)
T PRK02155 73 DGTMLGIGRQLAP----YGVPLIGINHGRLGFIT---DI-------PLDDMQETLPPMLAGNYEEEERMLLEAR 132 (291)
T ss_pred cHHHHHHHHHhcC----CCCCEEEEcCCCccccc---cC-------CHHHHHHHHHHHHcCCceEEEeEEEEEE
Confidence 9999999988753 34564446666643222 11 2247888999999998655555555443
No 33
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.76 E-value=0.019 Score=56.09 Aligned_cols=129 Identities=15% Similarity=0.091 Sum_probs=71.1
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeecc-Ch-hhHHHHHH-HHHHHhhhccchhhhhhccCcEEEEE
Q 018367 80 PSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEK-AP-DKVLHQLY-VTLEKFKAAGDVFASEIEKRLRLIVA 155 (357)
Q Consensus 80 ~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~-~p-~~~~~~~~-~~l~~l~~~~~~lA~~~~~~~~VVv~ 155 (357)
+.+++.+|+|+.. ....+++..+.+.|....+ +.+... .. +.... +. ..... . ....+ ....+.||++
T Consensus 4 ~~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~---~~~~D~vi~l 75 (296)
T PRK04539 4 PFHNIGIVTRPNT--PDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYT-QDTVGCHI-V-NKTEL---GQYCDLVAVL 75 (296)
T ss_pred CCCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecccccccchhc-cccccccc-c-chhhc---CcCCCEEEEE
Confidence 3577999999855 4667788888887754332 222210 00 00000 00 00000 0 00001 0134789999
Q ss_pred cCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEee
Q 018367 156 GGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (357)
Q Consensus 156 GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~ 230 (357)
|||||+-.++..+.. ..+||-=|-+|+ ||.=... ..+++.++++.+.+|+...-.+..+..
T Consensus 76 GGDGT~L~aa~~~~~----~~~PilGIN~G~-------lGFL~~~---~~~~~~~~l~~i~~g~~~~~~r~~l~~ 136 (296)
T PRK04539 76 GGDGTFLSVAREIAP----RAVPIIGINQGH-------LGFLTQI---PREYMTDKLLPVLEGKYLAEERILIEA 136 (296)
T ss_pred CCcHHHHHHHHHhcc----cCCCEEEEecCC-------CeEeecc---CHHHHHHHHHHHHcCCceEEEeeeEEE
Confidence 999999888876653 345655567776 5543321 235788899999988755444444443
No 34
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.65 E-value=0.027 Score=55.37 Aligned_cols=127 Identities=14% Similarity=0.087 Sum_probs=67.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeeccChhhHHHHHHHH---H--HHhhhccchhhhhh-ccCcEEEE
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVT---L--EKFKAAGDVFASEI-EKRLRLIV 154 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~~p~~~~~~~~~~---l--~~l~~~~~~lA~~~-~~~~~VVv 154 (357)
+++.+|+|+.. ..+.++...+.+.|....+ +.+.. ...+.+. .... . ..+.. ... ... .+.+.||+
T Consensus 2 ~~igiv~n~~~--~~~~~~~~~l~~~L~~~g~~v~~~~-~~~~~~~-~~~~~~~~~~~~~~~--~~~-~~~~~~~Dlvi~ 74 (305)
T PRK02649 2 PKAGIIYNDGK--PLAVRTAEELQDKLEAAGWEVVRAS-SSGGILG-YANPDQPVCHTGIDQ--LVP-PGFDSSMKFAIV 74 (305)
T ss_pred CEEEEEEcCCC--HHHHHHHHHHHHHHHHCCCEEEEec-chhhhcC-ccccccccccccccc--cCh-hhcccCcCEEEE
Confidence 56888989733 4567788888887765442 22221 1111000 0000 0 00000 000 001 13468999
Q ss_pred EcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEe
Q 018367 155 AGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHIL 229 (357)
Q Consensus 155 ~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~ 229 (357)
+|||||+-.++..+.. ..+||--|-+|+ ||.=.. ...+++.++++.+.+|+..--.+-.+.
T Consensus 75 iGGDGTlL~aar~~~~----~~iPilGIN~G~-------lGFLt~---~~~~~~~~~l~~l~~g~y~ie~r~~L~ 135 (305)
T PRK02649 75 LGGDGTVLSAARQLAP----CGIPLLTINTGH-------LGFLTE---AYLNQLDEAIDQVLAGQYTIEERTMLT 135 (305)
T ss_pred EeCcHHHHHHHHHhcC----CCCcEEEEeCCC-------Cccccc---CCHHHHHHHHHHHHcCCcEEEEeeeEE
Confidence 9999999888876653 345644456665 443221 123478899999999885443333333
No 35
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.61 E-value=0.039 Score=53.85 Aligned_cols=126 Identities=15% Similarity=0.184 Sum_probs=68.5
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeeccChhhHHHH--H-HHHHHHhhhccchhhhhh-ccCcEEEEEcC
Q 018367 83 PVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQ--L-YVTLEKFKAAGDVFASEI-EKRLRLIVAGG 157 (357)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~~p~~~~~~--~-~~~l~~l~~~~~~lA~~~-~~~~~VVv~GG 157 (357)
++.+|+|+.. ....++..++.+.|....+ +.+.. .....+.. . ....... +.. ... .+.+.||++||
T Consensus 2 ~igii~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~-~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~dlvi~lGG 73 (292)
T PRK01911 2 KIAIFGQTYQ--ESASPYIQELFDELEERGAEVLIEE-KFLDFLKQDLKFHPSYDTF----SDN-EELDGSADMVISIGG 73 (292)
T ss_pred EEEEEeCCCC--HHHHHHHHHHHHHHHHCCCEEEEec-chhhhhccccccccccccc----cch-hhcccCCCEEEEECC
Confidence 4778888743 5666778888887764443 22221 10100000 0 0000000 000 011 13478999999
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEee
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~ 230 (357)
|||+-.++..+.. ..+||-=|-+|+ ||.=.. ...++++++++.+.+|+..--.+-.+..
T Consensus 74 DGT~L~aa~~~~~----~~~PilGIN~G~-------lGFLt~---~~~~~~~~~l~~i~~g~~~i~~r~~L~~ 132 (292)
T PRK01911 74 DGTFLRTATYVGN----SNIPILGINTGR-------LGFLAT---VSKEEIEETIDELLNGDYTIEERSLLQL 132 (292)
T ss_pred cHHHHHHHHHhcC----CCCCEEEEecCC-------CCcccc---cCHHHHHHHHHHHHcCCceEEEEeeEEE
Confidence 9999888776653 356654467776 454332 1235788999999999865444444443
No 36
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.57 E-value=0.039 Score=53.16 Aligned_cols=106 Identities=10% Similarity=0.058 Sum_probs=63.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHH
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTA 161 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTV 161 (357)
+++.+++|+.. .+.++..++++.|....+-... .. .+.+.||+.|||||+
T Consensus 3 ~~i~iv~~~~~---~a~~~~~~l~~~l~~~g~~~~~--~~-------------------------~~~D~vi~lGGDGT~ 52 (264)
T PRK03501 3 RNLFFFYKRDK---ELVEKVKPLKKIAEEYGFTVVD--HP-------------------------KNANIIVSIGGDGTF 52 (264)
T ss_pred cEEEEEECCCH---HHHHHHHHHHHHHHHCCCEEEc--CC-------------------------CCccEEEEECCcHHH
Confidence 46777777665 6667788888877654431111 00 023579999999999
Q ss_pred HHHHHHHHhCCCCCCCCEEEEeC-CCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEee
Q 018367 162 SWLLGVVSDLKLPHSPPVATVPL-GTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (357)
Q Consensus 162 neVln~L~~~~~~~~~plgIIP~-GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~ 230 (357)
-.++..+... ..+|+--|.+ | .||.=.. .+.+++.++++.+.+++..--.+..+..
T Consensus 53 L~a~~~~~~~---~~~pilgIn~~G-------~lGFL~~---~~~~~~~~~l~~i~~g~~~~~~r~~l~~ 109 (264)
T PRK03501 53 LQAVRKTGFR---EDCLYAGISTKD-------QLGFYCD---FHIDDLDKMIQAITKEEIEVRKYPTIEV 109 (264)
T ss_pred HHHHHHhccc---CCCeEEeEecCC-------CCeEccc---CCHHHHHHHHHHHHcCCcEEEEeeeEEE
Confidence 8877665421 2455333455 5 3443221 1234788999999998864444444433
No 37
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.16 E-value=0.081 Score=55.18 Aligned_cols=129 Identities=17% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHhhc-c--CcEEEeeccChhhHHHH--HHHHHHHhhhccchhhhhh-ccCcE
Q 018367 78 LIPSCPVLVFINSKSGGQLGGKLLLTYRSLLN-E--NQVIDLGEKAPDKVLHQ--LYVTLEKFKAAGDVFASEI-EKRLR 151 (357)
Q Consensus 78 ~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~-~--~~V~~l~~~~p~~~~~~--~~~~l~~l~~~~~~lA~~~-~~~~~ 151 (357)
..+++.++||+||.. ....++...+...|. . ..++ +.. .....+.. ........-.....+ .+. .+.+.
T Consensus 191 ~~~p~~VgIV~n~~k--~~a~el~~~I~~~L~~~~gi~V~-ve~-~~a~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~Dl 265 (508)
T PLN02935 191 ESDPQTVLIITKPNS--TSVRVLCAEMVRWLREQKGLNIY-VEP-RVKKELLSESSYFNFVQTWEDEKEI-LLLHTKVDL 265 (508)
T ss_pred cCCCCEEEEEecCCC--HHHHHHHHHHHHHHHhcCCCEEE-Eec-hhhhhhccccccccccccccccchh-hhcccCCCE
Confidence 445788999999855 456667788887775 2 2333 221 10000000 000000000000000 001 13578
Q ss_pred EEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEE
Q 018367 152 LIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDS 225 (357)
Q Consensus 152 VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~ 225 (357)
||++|||||+-.++..+.. ..+||--|.+|+ ||.=.. ...+++.++|+.|.+|...--.+
T Consensus 266 VIsiGGDGTlL~Aar~~~~----~~iPILGIN~G~-------LGFLt~---i~~~e~~~~Le~il~G~y~Ie~R 325 (508)
T PLN02935 266 VITLGGDGTVLWAASMFKG----PVPPVVPFSMGS-------LGFMTP---FHSEQYRDCLDAILKGPISITLR 325 (508)
T ss_pred EEEECCcHHHHHHHHHhcc----CCCcEEEEeCCC-------cceecc---cCHHHHHHHHHHHHcCCceEEEE
Confidence 9999999999988877653 345544456664 332121 12347889999999987543333
No 38
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.03 E-value=0.11 Score=49.81 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=44.0
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEE
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHI 228 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v 228 (357)
.+.||++|||||+-.++..+ .+|+--|-+|+ ||.=.. ...+++.++++.+.+++.....+..+
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~-------~~Pilgin~G~-------lGfl~~---~~~~~~~~~l~~~~~g~~~~~~r~~l 104 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKV-------GTPLVGFKAGR-------LGFLSS---YTLEEIDRFLEDLKNWNFREEKRWFL 104 (256)
T ss_pred CCEEEEECCcHHHHHHHHHc-------CCCEEEEeCCC-------Cccccc---cCHHHHHHHHHHHHcCCcEEEEeeEE
Confidence 46799999999997776554 34543355565 554332 22357889999999998765555555
Q ss_pred eee
Q 018367 229 LMR 231 (357)
Q Consensus 229 ~~~ 231 (357)
.+.
T Consensus 105 ~~~ 107 (256)
T PRK14075 105 KIE 107 (256)
T ss_pred EEE
Confidence 544
No 39
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.50 E-value=0.14 Score=54.33 Aligned_cols=59 Identities=19% Similarity=0.363 Sum_probs=41.9
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCee
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEM 221 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~ 221 (357)
.+.||+.|||||+-.++..+.. ..+||-=|-+|+ ||.=.. ...+++.++++.+.+|+..
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~----~~~PilGin~G~-------lGFL~~---~~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNG----EEIPIICINMGT-------VGFLTE---FSKEEIFKAIDSIISGEYE 407 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcC----CCCCEEEEcCCC-------CCcCcc---cCHHHHHHHHHHHHcCCce
Confidence 4679999999999888776653 356655578887 444331 1235788899999999754
No 40
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.35 E-value=0.19 Score=48.40 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=41.7
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEE
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQID 224 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD 224 (357)
.+.||+.|||||+-.++..+... ...+|+--|.+|+-.=|+ . +. .+++.++++.+.+|+.....
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~--~~~iPilGIN~G~lGFL~-~--~~-------~~~~~~~l~~i~~g~y~i~~ 99 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQ--LDKVRFVGVHTGHLGFYT-D--WR-------PFEVDKLVIALAKDPGQVVS 99 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhccc--CCCCeEEEEeCCCceecc-c--CC-------HHHHHHHHHHHHcCCceEEE
Confidence 36799999999998887766531 135565556776533333 1 11 24688899999998754444
No 41
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.27 E-value=0.28 Score=47.20 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=41.6
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHH-HHHHHHcCCeeeEEEEE
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLS-FLEQVKNAKEMQIDSWH 227 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~-~l~~I~~~~~~~iD~~~ 227 (357)
.+.||+.|||||+-.++..+.. ..+|+--|-+|+ ||.=... ..+++.+ +++.+.+.+.....+-+
T Consensus 34 ~D~vi~iGGDGT~L~a~~~~~~----~~iPilGIN~G~-------lGFL~~~---~~~~~~~~~~~~l~~~~~~~r~~L~ 99 (259)
T PRK00561 34 ADYLFVLGGDGFFVSTAANYNC----AGCKVVGINTGH-------LGFYTSF---NETDLDQNFANKLDQLKFTQIDLLE 99 (259)
T ss_pred CCEEEEECCcHHHHHHHHHhcC----CCCcEEEEecCC-------Ccccccc---CHHHHHHHHHHHHhhCCeEEEEEEE
Confidence 4679999999999888766543 356655577775 4433321 1235666 77777665554444444
Q ss_pred Ee
Q 018367 228 IL 229 (357)
Q Consensus 228 v~ 229 (357)
+.
T Consensus 100 ~~ 101 (259)
T PRK00561 100 VQ 101 (259)
T ss_pred EE
Confidence 44
No 42
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.75 E-value=0.24 Score=47.92 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=61.5
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHH
Q 018367 83 PVLVFINSKSGGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTA 161 (357)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTV 161 (357)
++.+++|+.. ....++..++.+.|. .++ +.+.. .....+. .. .... .. .+.+.||++|||||+
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~-~g~~~~~~~-~~~~~~~-----~~-----~~~~-~~-~~~D~vi~lGGDGT~ 65 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLP-PDWEIIYEM-EAAKALG-----MD-----GLDI-EE-INADVIITIGGDGTI 65 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHh-cCCEEEEec-hhhhhcC-----cc-----cCcc-cc-cCCCEEEEEcCcHHH
Confidence 4788888744 456677788887663 232 21221 1111100 00 0000 00 134789999999999
Q ss_pred HHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEEEee
Q 018367 162 SWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWHILM 230 (357)
Q Consensus 162 neVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~v~~ 230 (357)
-.++..+ ..|.+| |-+|+= |.=.. ...+++.++++.+.++...--.+..+..
T Consensus 66 L~a~~~~------~~PilG-IN~G~l-------GFL~~---~~~~~~~~~l~~i~~g~~~i~~r~~L~~ 117 (271)
T PRK01185 66 LRTLQRA------KGPILG-INMGGL-------GFLTE---IEIDEVGSAIKKLIRGEYFIDERMKLKV 117 (271)
T ss_pred HHHHHHc------CCCEEE-EECCCC-------ccCcc---cCHHHHHHHHHHHHcCCcEEEEeeEEEE
Confidence 6665432 123344 577753 33221 1224788999999998755444444443
No 43
>PLN02727 NAD kinase
Probab=94.44 E-value=0.35 Score=53.75 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=67.9
Q ss_pred cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccC-cE-EEeeccChhhHHHHHHHHHHHhhh-ccchhhhhh-ccCc
Q 018367 75 RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN-QV-IDLGEKAPDKVLHQLYVTLEKFKA-AGDVFASEI-EKRL 150 (357)
Q Consensus 75 ~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~-~V-~~l~~~~p~~~~~~~~~~l~~l~~-~~~~lA~~~-~~~~ 150 (357)
+.-..|++.+++|.++.. ...+....+...|... .+ +.+.. ...+.+... ..+..... .... ..+. ...+
T Consensus 672 l~W~~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~VE~-~~a~~l~~~-~~~~~~~~~~~~~-~~el~~~~D 745 (986)
T PLN02727 672 LMWKSTPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVLVEP-DVHDIFARI-PGFGFVQTFYSQD-TSDLHERVD 745 (986)
T ss_pred eecCCCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEEEec-chHHHhhcc-ccccccceecccc-hhhcccCCC
Confidence 344567799999999876 4555666677776543 33 22222 111111000 00000000 0000 0011 1347
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCe
Q 018367 151 RLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKE 220 (357)
Q Consensus 151 ~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~ 220 (357)
.||++|||||+-.++..+.. ..+||-=|-+|+ ||+=.. .+.+++.+.|+.|.+|..
T Consensus 746 LVIvLGGDGTlLrAar~~~~----~~iPILGINlGr-------LGFLTd---i~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 746 FVACLGGDGVILHASNLFRG----AVPPVVSFNLGS-------LGFLTS---HYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred EEEEECCcHHHHHHHHHhcC----CCCCEEEEeCCC-------cccccc---CCHHHHHHHHHHHHcCCc
Confidence 89999999999888877653 356665577774 443321 123467888999888763
No 44
>PLN02929 NADH kinase
Probab=93.47 E-value=0.5 Score=46.43 Aligned_cols=75 Identities=20% Similarity=0.132 Sum_probs=47.6
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCC---------cch--hhhcCCCCCCCCCchHHHHHHHHHHH
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG---------NNI--PFSFGWGKKNPNTDQQAVLSFLEQVK 216 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTG---------NDf--ARsLG~~~~~~~~~~~~~~~~l~~I~ 216 (357)
+.+.||++|||||+-.++..+ . ..+||-=|-.|+. |.| .|++|.=.. ...+++.++|+.+.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~-~----~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~---~~~~~~~~~L~~il 135 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL-D----DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCA---ATAEDFEQVLDDVL 135 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc-C----CCCcEEEEECCCcccccccccccccccccCcccccc---CCHHHHHHHHHHHH
Confidence 447899999999998877766 3 2455433566642 223 346665432 23468899999999
Q ss_pred cCCeeeEEEEEEee
Q 018367 217 NAKEMQIDSWHILM 230 (357)
Q Consensus 217 ~~~~~~iD~~~v~~ 230 (357)
+|....-.+-.+..
T Consensus 136 ~g~~~~~~r~~L~~ 149 (301)
T PLN02929 136 FGRLKPTELSRIST 149 (301)
T ss_pred cCCceEEEeeeEEE
Confidence 99765444444433
No 45
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.29 E-value=0.58 Score=45.31 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=37.4
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHc-CCee
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKN-AKEM 221 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~-~~~~ 221 (357)
.+.||++|||||+-.++..+.. ..+||--|-+|+ ||.=.. ...+++.+.++.+.+ |+..
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~----~~~PilgIn~G~-------lGFL~~---~~~~~~~~~l~~~~~~g~~~ 102 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAK----YDIPLIGINRGN-------LGFLTD---IDPKNAYEQLEACLERGEFF 102 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhcc----CCCcEEEEeCCC-------Cccccc---CCHHHHHHHHHHHHhcCCce
Confidence 4689999999999888776643 245543357776 444321 122356677777766 6544
No 46
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=90.96 E-value=0.33 Score=46.33 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=35.9
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCC
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAK 219 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~ 219 (357)
+.+.||++|||||+-.++..... ..+||--|-+|+ ||.=.. ....+++.+.++.+..+.
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~----~~~PvlGIN~G~-------lGFL~~--~~~~~e~~~~l~~~~~~~ 83 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMN----SGKPVYGMNRGS-------VGFLMN--EYSEDDLLERIAAAEPTV 83 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcC----CCCeEEEEeCCC-------CCcccC--CCCHHHHHHHHHHhhcCc
Confidence 45789999999999888776543 346655567775 333210 011235666666666553
No 47
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=89.83 E-value=1.6 Score=44.65 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=37.2
Q ss_pred CcEEEEEcCchHHHHHHHHHHhC---C---CCCCCCEEEEeCCCCcchhhhcCC
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDL---K---LPHSPPVATVPLGTGNNIPFSFGW 196 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~---~---~~~~~plgIIP~GTGNDfARsLG~ 196 (357)
...|+|+|||-=++.||..-.+. + +....-+-|||+|+ |.+||.||-
T Consensus 76 ~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 76 PVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred ceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 56799999999999999876542 1 22345589999999 999999984
No 48
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=88.48 E-value=3.6 Score=40.54 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=27.0
Q ss_pred cCcEEEEEcCchHHHHHHHHHH---hCC-CCCCCCEEEEeC--CCCcch
Q 018367 148 KRLRLIVAGGDGTASWLLGVVS---DLK-LPHSPPVATVPL--GTGNNI 190 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~---~~~-~~~~~plgIIP~--GTGNDf 190 (357)
+.+.||++|| |++..+...+. ... ....+|+..||- |||--.
T Consensus 78 ~~d~IiaiGG-Gs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~ 125 (332)
T cd08180 78 KPDIVIALGG-GSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEV 125 (332)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhh
Confidence 4578999998 67766665442 111 224579999994 777544
No 49
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=88.45 E-value=2.6 Score=40.77 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=47.8
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeEEEEE
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQIDSWH 227 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~iD~~~ 227 (357)
..+.|++.|||||+-.++...... .+|+-=|-.|+ ||.=.++ ..++++++++.+.+++.+-.-+..
T Consensus 55 ~~d~ivvlGGDGtlL~~~~~~~~~----~~pilgin~G~-------lGFLt~~---~~~~~~~~~~~~~~~~~~~~~r~~ 120 (281)
T COG0061 55 KADLIVVLGGDGTLLRAARLLARL----DIPVLGINLGH-------LGFLTDF---EPDELEKALDALLEGEYRIEERLL 120 (281)
T ss_pred CceEEEEeCCcHHHHHHHHHhccC----CCCEEEEeCCC-------ccccccc---CHHHHHHHHHHHhcCceEEEEeEE
Confidence 456799999999999888877643 34544444442 3433321 134788999999888777667776
Q ss_pred Eeeee
Q 018367 228 ILMRM 232 (357)
Q Consensus 228 v~~~~ 232 (357)
+....
T Consensus 121 l~~~v 125 (281)
T COG0061 121 LEVSV 125 (281)
T ss_pred EEEEE
Confidence 66554
No 50
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=86.60 E-value=3 Score=41.75 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=50.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccC--c--EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNEN--Q--VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~--~--V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
++++|+..+..- ..+.+.+.+.|... . ++.+....+...++.+.+.++.+.+.+ ....+.||++||
T Consensus 24 ~rvlvVtd~~v~----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~------~dr~~~IIAvGG 93 (355)
T cd08197 24 DKYLLVTDSNVE----DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALG------ATRRSVIVALGG 93 (355)
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcC------CCCCcEEEEECC
Confidence 678888875432 22556666666532 2 222222112222222323332222111 112236777776
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeC--CCCcch
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNI 190 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~--GTGNDf 190 (357)
|++..+...+... ....+|+..||- |++.|=
T Consensus 94 -Gsv~D~ak~~A~~-~~rgip~I~IPTTlla~~da 126 (355)
T cd08197 94 -GVVGNIAGLLAAL-LFRGIRLVHIPTTLLAQSDS 126 (355)
T ss_pred -cHHHHHHHHHHHH-hccCCCEEEecCcccccccc
Confidence 8999888776532 124678999998 677663
No 51
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=85.22 E-value=6.6 Score=39.62 Aligned_cols=125 Identities=12% Similarity=0.117 Sum_probs=63.2
Q ss_pred cccccCeEEecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE--EEeeccChhhHHHHHHHHH
Q 018367 59 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV--IDLGEKAPDKVLHQLYVTL 132 (357)
Q Consensus 59 ~~~~p~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V--~~l~~~~p~~~~~~~~~~l 132 (357)
.|.+|.+++.-... .. .......++++|+.-+.. +...+++.+++.|....+ .......|..-.+.+.+.+
T Consensus 5 ~~~~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~ 81 (383)
T PRK09860 5 TFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGL 81 (383)
T ss_pred ccccCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHH
Confidence 46678887765422 11 112223367777754311 222356677777764332 2222222222222233333
Q ss_pred HHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHHh---CC------------CCCCCCEEEEeC--CCCcchhhhcC
Q 018367 133 EKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSD---LK------------LPHSPPVATVPL--GTGNNIPFSFG 195 (357)
Q Consensus 133 ~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~~---~~------------~~~~~plgIIP~--GTGNDfARsLG 195 (357)
+. +++ .+.+.||++|| |++-.+.-.+.- .. ....+|+..||- |||-...+.--
T Consensus 82 ~~--------~~~-~~~D~IiaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~av 151 (383)
T PRK09860 82 KL--------LKE-NNCDSVISLGG-GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCI 151 (383)
T ss_pred HH--------HHH-cCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEE
Confidence 32 111 24577999998 555555544321 10 124578999996 88887666544
Q ss_pred C
Q 018367 196 W 196 (357)
Q Consensus 196 ~ 196 (357)
+
T Consensus 152 i 152 (383)
T PRK09860 152 I 152 (383)
T ss_pred E
Confidence 3
No 52
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=84.72 E-value=7.4 Score=38.77 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhh-ccCcEEEEEcCchH
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEI-EKRLRLIVAGGDGT 160 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~-~~~~~VVv~GGDGT 160 (357)
++++|+..+.. ....+++.+...|....+..+....|..-++.+.+.++.+ ++. .+.+.||++|| |+
T Consensus 24 ~r~lvVtd~~~---~~~g~~~~v~~~L~~~~~~~~~~v~~~pt~~~v~~~~~~~--------~~~~~~~D~IIaiGG-GS 91 (355)
T TIGR03405 24 RRVVVVTFPEA---RALGLARRLEALLGGRLAALIDDVAPNPDVAQLDGLYARL--------WGDEGACDLVIALGG-GS 91 (355)
T ss_pred CeEEEEECcch---hhcchHHHHHHHhccCcEEEeCCCCCCcCHHHHHHHHHHH--------HhcCCCCCEEEEeCC-cc
Confidence 67888876543 2223566777777543332222212222222222232221 111 12577999988 77
Q ss_pred HHHHHHHHHhC---C----------------CCCCCCEEEEeC--CCCcchhhh
Q 018367 161 ASWLLGVVSDL---K----------------LPHSPPVATVPL--GTGNNIPFS 193 (357)
Q Consensus 161 VneVln~L~~~---~----------------~~~~~plgIIP~--GTGNDfARs 193 (357)
+..+...+.-. . ....+|+..||- |||-...+.
T Consensus 92 viD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 92 VIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 77766544211 0 113578999996 787666554
No 53
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=83.23 E-value=7.6 Score=38.97 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=29.9
Q ss_pred cCcEEEEEcCchHHHHHHHHHHh---C------------CCCCCCCEEEEeC--CCCcchhhhc
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSD---L------------KLPHSPPVATVPL--GTGNNIPFSF 194 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~---~------------~~~~~~plgIIP~--GTGNDfARsL 194 (357)
+.+.||++|| |++..+.-.+.- . .....+|+..||- |||-...+.-
T Consensus 85 ~~D~IIavGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~a 147 (377)
T cd08176 85 GCDFIISIGG-GSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINY 147 (377)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcE
Confidence 4577888988 777776655421 0 0124579999996 8887765443
No 54
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=82.97 E-value=7.3 Score=39.03 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=56.2
Q ss_pred ccccCeEEecCCc-cccccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccC--cEEEeeccChhhHHHHHHHHHHHhh
Q 018367 60 YYIPNYILVSGSE-VQRSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QVIDLGEKAPDKVLHQLYVTLEKFK 136 (357)
Q Consensus 60 ~~~p~~~~~~~~~-~~~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~--~V~~l~~~~p~~~~~~~~~~l~~l~ 136 (357)
|..|..++.-... ..+... ..++++|+..+.+-. ...+++.+.+.|+.. .+..+....|..-.+.+...++.+
T Consensus 2 ~~~p~~i~~G~g~l~~l~~~-~~~r~livt~~~~~~--~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~- 77 (375)
T cd08179 2 FTLPRDIYFGKGSLEYLKTL-KGKKAFIVTGGGSMK--KFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAM- 77 (375)
T ss_pred ccCCceEEECcCHHHHHHHh-cCCeEEEEeCchHHH--hCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-
Confidence 4567776654321 111111 236677776543321 123556666666532 222222211111122222232211
Q ss_pred hccchhhhhhccCcEEEEEcCchHHHHHHHHHH---hCC---------------CCCCCCEEEEeC--CCCcchhh
Q 018367 137 AAGDVFASEIEKRLRLIVAGGDGTASWLLGVVS---DLK---------------LPHSPPVATVPL--GTGNNIPF 192 (357)
Q Consensus 137 ~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~---~~~---------------~~~~~plgIIP~--GTGNDfAR 192 (357)
++ .+.+.||++|| |++..+.-.+. ... ....+|+..||- |||--..+
T Consensus 78 -------~~-~~~D~IIavGG-GSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~ 144 (375)
T cd08179 78 -------RE-FEPDWIIALGG-GSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTA 144 (375)
T ss_pred -------Hh-cCCCEEEEeCC-ccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCC
Confidence 11 24567999988 66666554442 110 013468999996 77765553
No 55
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=82.56 E-value=6.4 Score=39.21 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhcc---CcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNE---NQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~---~~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGD 158 (357)
++++|+..+..-. .+.+.+.+.|.. ..++.+....+..-++.+.+.++.+.+.+ ..+.+.||++||
T Consensus 24 ~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~------~~r~d~IIaiGG- 92 (344)
T cd08169 24 DQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALG------ANRRTAIVAVGG- 92 (344)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcC------CCCCcEEEEECC-
Confidence 6788887754432 355666666643 22332322112111222222322221111 123466787876
Q ss_pred hHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 159 GTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 159 GTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
|++..+...+... ....+|+-.||-
T Consensus 93 Gsv~D~ak~vA~~-~~rgip~i~VPT 117 (344)
T cd08169 93 GATGDVAGFVAST-LFRGIAFIRVPT 117 (344)
T ss_pred cHHHHHHHHHHHH-hccCCcEEEecC
Confidence 8888888776532 124678999996
No 56
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=80.94 E-value=12 Score=37.12 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-E-EeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-I-DLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~-~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDG 159 (357)
++++|+..+.. ...+.+.+.+.|....+ + ......+.+. +.+.++.+. + .+.+.||++|| |
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~~~~~~~~~~~p~~~~---v~~~~~~~~--------~-~~~D~iIavGG-G 86 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAGEAFVLRYDGECSEEN---IERLAAQAK--------E-NGADVIIGIGG-G 86 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcCeEEEEEeCCCCCHHH---HHHHHHHHH--------h-cCCCEEEEeCC-c
Confidence 67888887666 23467777777744333 1 1222222222 222222211 1 24567888888 8
Q ss_pred HHHHHHHHHHhCCCCCCCCEEEEeC--CCCcchh
Q 018367 160 TASWLLGVVSDLKLPHSPPVATVPL--GTGNNIP 191 (357)
Q Consensus 160 TVneVln~L~~~~~~~~~plgIIP~--GTGNDfA 191 (357)
++..+...+... ..+|+..||- |||-..+
T Consensus 87 s~~D~aK~ia~~---~~~p~i~VPTT~gtgse~t 117 (347)
T cd08172 87 KVLDTAKAVADR---LGVPVITVPTLAATCAAWT 117 (347)
T ss_pred HHHHHHHHHHHH---hCCCEEEecCccccCcccc
Confidence 999888877542 2578888985 6765554
No 57
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=80.50 E-value=6.5 Score=38.95 Aligned_cols=92 Identities=20% Similarity=0.306 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccC----cEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEc
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNEN----QVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAG 156 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~----~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~G 156 (357)
.++++|+..+..-. .+.+.+.+.|... .++.+....+..-++.+.+.++.+.+.+ ..+.+.||++|
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~------~~r~d~IIaiG 93 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAG------LDRKSLIIALG 93 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcC------CCCCCeEEEEC
Confidence 36788888766542 3566677766542 2233322112222232333333222111 12235688887
Q ss_pred CchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 157 GDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 157 GDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
| |++..+...+... ....+|+..||-
T Consensus 94 G-Gsv~D~ak~vA~~-~~rgip~i~VPT 119 (345)
T cd08195 94 G-GVVGDLAGFVAAT-YMRGIDFIQIPT 119 (345)
T ss_pred C-hHHHhHHHHHHHH-HhcCCCeEEcch
Confidence 7 8888888766421 124678888885
No 58
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=79.73 E-value=7.6 Score=39.07 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCc--EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDG 159 (357)
++++|+..+.+-... .+++.+...|.... +..+....|..-.+.+.+.++.++ + .+.+.||++|| |
T Consensus 27 kr~livtd~~~~~~~--g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~--------~-~~~D~IIaiGG-G 94 (383)
T cd08186 27 SKVLLVTGKSAYKKS--GAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGR--------E-FGAQAVIAIGG-G 94 (383)
T ss_pred CEEEEEcCccHHhhc--ChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH--------H-cCCCEEEEeCC-c
Confidence 678888766553222 24556666665322 222222222222222323332211 1 24567999998 7
Q ss_pred HHHHHHHHHHh---CC-------------CCCCCCEEEEeC--CCCcchhhh
Q 018367 160 TASWLLGVVSD---LK-------------LPHSPPVATVPL--GTGNNIPFS 193 (357)
Q Consensus 160 TVneVln~L~~---~~-------------~~~~~plgIIP~--GTGNDfARs 193 (357)
++..+...+.- .. ....+|+..||- |||...++.
T Consensus 95 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~ 146 (383)
T cd08186 95 SPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRF 146 (383)
T ss_pred cHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCe
Confidence 77776655432 10 013578999997 887765544
No 59
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=79.71 E-value=12 Score=37.51 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=52.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCc--EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDG 159 (357)
++++|+..+.+- +...+++++.+.|.... +.......|..-.+.+.+.++. +++ .+.+.||++|| |
T Consensus 26 ~r~livt~~~~~--~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~--------~~~-~~~D~IiavGG-G 93 (380)
T cd08185 26 KKALIVTGNGSS--KKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAAL--------ARE-EGCDFVVGLGG-G 93 (380)
T ss_pred CeEEEEeCCCch--hhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHH--------HHH-cCCCEEEEeCC-c
Confidence 688888876552 12236666676665432 2212221111112222222221 111 24577999988 6
Q ss_pred HHHHHHHHHHhC-------------------C-CCCCCCEEEEe--CCCCcchhhhc
Q 018367 160 TASWLLGVVSDL-------------------K-LPHSPPVATVP--LGTGNNIPFSF 194 (357)
Q Consensus 160 TVneVln~L~~~-------------------~-~~~~~plgIIP--~GTGNDfARsL 194 (357)
++..+.-.+.-. . ....+|+..|| +|||.-..+.-
T Consensus 94 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~a 150 (380)
T cd08185 94 SSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWA 150 (380)
T ss_pred cHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeE
Confidence 777666554211 0 12357899999 48877655543
No 60
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=78.87 E-value=10 Score=38.02 Aligned_cols=122 Identities=22% Similarity=0.257 Sum_probs=60.7
Q ss_pred cccccCeEEecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccC--cEEEeeccChhhHHHHHHHHH
Q 018367 59 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNEN--QVIDLGEKAPDKVLHQLYVTL 132 (357)
Q Consensus 59 ~~~~p~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~--~V~~l~~~~p~~~~~~~~~~l 132 (357)
+|..|..+..-... .. ..... .++++|+.-+.+... ..+++++.+.|... .+..++...+..-.+.+...+
T Consensus 3 ~~~~p~~i~~G~g~~~~l~~~~~~~-~~r~livt~~~~~~~--~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~ 79 (382)
T cd08187 3 TFYNPTKIIFGKGTESELGKELKKY-GKKVLLVYGGGSIKK--NGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGI 79 (382)
T ss_pred eecCCCEEEECCCHHHHHHHHHHHh-CCEEEEEeCCcHHHh--cCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHH
Confidence 45567776654321 11 11111 367888866555422 23456666666542 232222212221122222333
Q ss_pred HHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHHhC--------------C-CCCCCCEEEEeC--CCCcchhhh
Q 018367 133 EKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDL--------------K-LPHSPPVATVPL--GTGNNIPFS 193 (357)
Q Consensus 133 ~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~~~--------------~-~~~~~plgIIP~--GTGNDfARs 193 (357)
+.++ ..+.+.||++|| |++..+.-.+.-. . ....+|+-.||- |||-...+.
T Consensus 80 ~~~~---------~~~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~ 147 (382)
T cd08187 80 ELCK---------EEKVDFILAVGG-GSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGG 147 (382)
T ss_pred HHHH---------HcCCCEEEEeCC-hHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCC
Confidence 2211 124578999998 7777776654221 0 124578999995 787655544
No 61
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=78.78 E-value=13 Score=36.25 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhcc-CcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchH
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNE-NQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGT 160 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~-~~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGT 160 (357)
++++++..+..-. .+.+.+.+.|.. ..+.......+..-.+.+.+.++.+. + .+.+.||++|| |+
T Consensus 24 ~~~liv~~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~--------~-~~~d~IIaiGG-Gs 89 (332)
T cd07766 24 DRALVVSDEGVVK----GVGEKVADSLKKLIAVHIFDGVGPNPTFEEVKEAVERAR--------A-AEVDAVIAVGG-GS 89 (332)
T ss_pred CeEEEEeCCchhh----hHHHHHHHHHHhcCcEEEeCCcCCCcCHHHHHHHHHHHH--------h-cCcCEEEEeCC-ch
Confidence 6788887655533 355556665543 22211111122111222323332211 1 24567888877 88
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEeC--CCC
Q 018367 161 ASWLLGVVSDLKLPHSPPVATVPL--GTG 187 (357)
Q Consensus 161 VneVln~L~~~~~~~~~plgIIP~--GTG 187 (357)
+..+...+... ....+|+..||- |||
T Consensus 90 ~~D~aK~ia~~-~~~~~p~i~iPTt~~tg 117 (332)
T cd07766 90 TLDTAKAVAAL-LNRGLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHHHHH-hcCCCCEEEEeCCCchh
Confidence 88888776542 123689999996 565
No 62
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=78.72 E-value=1.6 Score=43.39 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=44.5
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEE--eCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeE--E
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATV--PLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQI--D 224 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgII--P~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~i--D 224 (357)
-+.||-+|||||+-....-+.+ +..|.|||= |.|+---+. +|..+|. ++..++..+..|..+-+ +
T Consensus 106 aD~VisvGGDGTfL~Aasrv~~---~~~PViGvNtDP~~Seg~lc----L~~~~~~----n~~~al~k~~sgnF~wv~r~ 174 (395)
T KOG4180|consen 106 ADMVISVGGDGTFLLAASRVID---DSKPVIGVNTDPTGSEGHLC----LPDKYPS----NPAGALCKLTSGNFEWVLRQ 174 (395)
T ss_pred hhEEEEecCccceeehhhhhhc---cCCceeeecCCCCcCcceEe----ccccCCC----CcHHHHHHHHhccHHHhhhh
Confidence 4679999999999777664443 346677774 555544433 3444442 56677888877776544 3
Q ss_pred EEEEeee
Q 018367 225 SWHILMR 231 (357)
Q Consensus 225 ~~~v~~~ 231 (357)
+.++++.
T Consensus 175 rir~tv~ 181 (395)
T KOG4180|consen 175 RIRGTVV 181 (395)
T ss_pred eeEEEEe
Confidence 4444443
No 63
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=78.63 E-value=10 Score=37.86 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=61.3
Q ss_pred ccccccCeEEecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCc--E-EE-eeccChhhHHHHHH
Q 018367 58 NNYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V-ID-LGEKAPDKVLHQLY 129 (357)
Q Consensus 58 ~~~~~p~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V-~~-l~~~~p~~~~~~~~ 129 (357)
+.|.+|..++.-... .. ...... ++++||..+..- ..+.+++...|.... + |+ +..+.+.+. +.
T Consensus 3 ~~f~~p~~i~~G~g~~~~l~~~l~~~g-~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~---v~ 74 (366)
T PRK09423 3 RIFISPSKYVQGKGALARLGEYLKPLG-KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGECSDNE---ID 74 (366)
T ss_pred ccccCCceEEECCCHHHHHHHHHHHcC-CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHH---HH
Confidence 567778887764321 11 111222 678888754432 236677777775432 2 32 222222222 22
Q ss_pred HHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC--CCCcchhh
Q 018367 130 VTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIPF 192 (357)
Q Consensus 130 ~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~--GTGNDfAR 192 (357)
..++.+ ++ .+.+.||++|| |++..+...+.-. ..+|+..||- |||-....
T Consensus 75 ~~~~~~--------~~-~~~d~IIavGG-Gsv~D~aK~iA~~---~~~p~i~IPTtagtgSe~t~ 126 (366)
T PRK09423 75 RLVAIA--------EE-NGCDVVIGIGG-GKTLDTAKAVADY---LGVPVVIVPTIASTDAPTSA 126 (366)
T ss_pred HHHHHH--------Hh-cCCCEEEEecC-hHHHHHHHHHHHH---cCCCEEEeCCccccCccccC
Confidence 222211 11 24577999998 8888888777532 3578999996 56654444
No 64
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=78.03 E-value=15 Score=36.52 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=30.3
Q ss_pred cCcEEEEEcCchHHHHHHHHHHh-------------CC-CCCCCCEEEEeC--CCCcchhhh
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSD-------------LK-LPHSPPVATVPL--GTGNNIPFS 193 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~-------------~~-~~~~~plgIIP~--GTGNDfARs 193 (357)
+.+.||++|| |++..+...+.- .. ....+|+..||- |||...++.
T Consensus 83 ~~D~IIavGG-GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~ 143 (357)
T cd08181 83 NADFVIGIGG-GSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQY 143 (357)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCe
Confidence 4577999988 777777765431 00 124578999996 888777763
No 65
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=77.57 E-value=19 Score=36.15 Aligned_cols=124 Identities=13% Similarity=0.149 Sum_probs=61.1
Q ss_pred ccccccCeEEecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCc--EEEeeccChhhHHHHHHHH
Q 018367 58 NNYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDKVLHQLYVT 131 (357)
Q Consensus 58 ~~~~~p~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V~~l~~~~p~~~~~~~~~~ 131 (357)
..|..|+.++.-... .. .......++++|+..+..-. ..+++++...|.... +.......+..-.+.+...
T Consensus 3 ~~~~~~~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~ 79 (382)
T PRK10624 3 NRMILNETAYFGRGAIGALTDEVKRRGFKKALIVTDKTLVK---CGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEG 79 (382)
T ss_pred ccccCCCeEEECcCHHHHHHHHHHhcCCCEEEEEeCcchhh---CcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHH
Confidence 457778887764321 11 11122336788887653221 125666666665322 2111221122112223223
Q ss_pred HHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHH---hCC--------------CCCCCCEEEEeC--CCCcchhh
Q 018367 132 LEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVS---DLK--------------LPHSPPVATVPL--GTGNNIPF 192 (357)
Q Consensus 132 l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~---~~~--------------~~~~~plgIIP~--GTGNDfAR 192 (357)
++.+ ++ .+.+.||++|| |++..+.-.+. ... ....+|+..||- |||-...+
T Consensus 80 ~~~~--------~~-~~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~ 149 (382)
T PRK10624 80 VEVF--------KA-SGADYLIAIGG-GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTI 149 (382)
T ss_pred HHHH--------Hh-cCCCEEEEeCC-hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcc
Confidence 2221 11 24567888888 77777665432 110 123578999995 88866665
Q ss_pred hc
Q 018367 193 SF 194 (357)
Q Consensus 193 sL 194 (357)
..
T Consensus 150 ~a 151 (382)
T PRK10624 150 NY 151 (382)
T ss_pred ee
Confidence 43
No 66
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=77.53 E-value=10 Score=37.53 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCc--E--EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V--~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
++++|+.++..- ..+.+.+.+.|.... + +.+....+..-++.+.+.++.+.+.+ ..+.+.||++||
T Consensus 21 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~------~~r~d~IIavGG 90 (344)
T TIGR01357 21 SKLVIITDETVA----DLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAG------LDRSSTIIALGG 90 (344)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcC------CCCCCEEEEEcC
Confidence 678888865443 235666777775432 2 22322122211222333333221110 112367888887
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
|++..+...+... ....+|+..||-
T Consensus 91 -Gsv~D~aK~iA~~-~~~~~p~i~VPT 115 (344)
T TIGR01357 91 -GVVGDLAGFVAAT-YMRGIRFIQVPT 115 (344)
T ss_pred -hHHHHHHHHHHHH-HccCCCEEEecC
Confidence 8888887776421 124678888886
No 67
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=77.09 E-value=4.9 Score=39.81 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCc--E--EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--V--IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V--~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
+++++|..+.+- ...++.+.+.|+... + |+.....|. .+.+.+.++. +++ .+.+.||++||
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p~--~~~v~~~~~~--------~~~-~~~d~iiavGG 87 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGEST--YENVERLKKN--------PAV-QEADMIFAVGG 87 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCCC--HHHHHHHHHH--------Hhh-cCCCEEEEeCC
Confidence 678888765432 234667777775432 2 322111221 2222222221 111 24577999998
Q ss_pred chHHHHHHHHHHhCCCCCCCCEEEEeC--CCCcch
Q 018367 158 DGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNI 190 (357)
Q Consensus 158 DGTVneVln~L~~~~~~~~~plgIIP~--GTGNDf 190 (357)
|++..+...+.-. ..+|+..||- |||--.
T Consensus 88 -Gs~~D~aK~ia~~---~~~p~i~VPTt~gtgse~ 118 (345)
T cd08171 88 -GKAIDTVKVLADK---LGKPVFTFPTIASNCAAV 118 (345)
T ss_pred -cHHHHHHHHHHHH---cCCCEEEecCccccCccc
Confidence 8888888777542 2578888886 555433
No 68
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=77.08 E-value=23 Score=36.08 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=69.5
Q ss_pred cccccCeEEecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCc----EEEeeccChhhHHHHHHH
Q 018367 59 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ----VIDLGEKAPDKVLHQLYV 130 (357)
Q Consensus 59 ~~~~p~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~----V~~l~~~~p~~~~~~~~~ 130 (357)
.|.+|+.++.-... .. .......++.+|+.-|. -....+++.+.+.|+... ||+-. .|+.-.+.+..
T Consensus 3 ~~~~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~---~~~~g~~~~v~~~L~~~~i~~~if~~v--~p~P~~~~v~~ 77 (377)
T COG1454 3 WFYLPTEILFGRGSLKELGEEVKRLGAKRALIVTDRG---LAKLGLLDKVLDSLDAAGIEYEVFDEV--EPEPTIETVEA 77 (377)
T ss_pred ccccCceEEecCChHHHHHHHHHhcCCCceEEEECCc---cccchhHHHHHHHHHhcCCeEEEecCC--CCCCCHHHHHH
Confidence 46678887765432 11 11222337788887764 223346777777777555 34322 23332333444
Q ss_pred HHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHH---hCC------------CCCCCCEEEEe--CCCCcchhhh
Q 018367 131 TLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVS---DLK------------LPHSPPVATVP--LGTGNNIPFS 193 (357)
Q Consensus 131 ~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~---~~~------------~~~~~plgIIP--~GTGNDfARs 193 (357)
.++.+. ..+++.||++|| |++..+.-++. ... ....+|+--|| +|||..-.+.
T Consensus 78 ~~~~~~---------~~~~D~iIalGG-GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~ 147 (377)
T COG1454 78 GAEVAR---------EFGPDTIIALGG-GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPF 147 (377)
T ss_pred HHHHHH---------hcCCCEEEEeCC-ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCe
Confidence 443221 125678999999 77776665542 110 11237788888 5888887777
Q ss_pred cCCCC
Q 018367 194 FGWGK 198 (357)
Q Consensus 194 LG~~~ 198 (357)
--+..
T Consensus 148 aVitd 152 (377)
T COG1454 148 AVITD 152 (377)
T ss_pred EEEEe
Confidence 65543
No 69
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=76.03 E-value=12 Score=37.17 Aligned_cols=98 Identities=20% Similarity=0.215 Sum_probs=50.8
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHhhccCc----EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEE
Q 018367 80 PSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ----VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVA 155 (357)
Q Consensus 80 ~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~----V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~ 155 (357)
..++++|+..+... ..+.+.+.+.|.... ++.+....+...++.+...++.+.+.+ ..+.+.||++
T Consensus 30 ~~~~~livtd~~~~----~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~------~~r~d~IIav 99 (358)
T PRK00002 30 KGKKVAIVTDETVA----PLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAG------LDRSDTLIAL 99 (358)
T ss_pred CCCeEEEEECCchH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcC------CCCCCEEEEE
Confidence 34678888875552 236677777775432 222222122222222333332221111 1133668888
Q ss_pred cCchHHHHHHHHHHhCCCCCCCCEEEEeC--CCCcc
Q 018367 156 GGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNN 189 (357)
Q Consensus 156 GGDGTVneVln~L~~~~~~~~~plgIIP~--GTGND 189 (357)
|| |++..+...+... ....+|+..||- ++.+|
T Consensus 100 GG-Gsv~D~aK~iA~~-~~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 100 GG-GVIGDLAGFAAAT-YMRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred cC-cHHHHHHHHHHHH-hcCCCCEEEcCchhhhccc
Confidence 77 8888888776521 124678888886 34444
No 70
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=74.43 E-value=17 Score=35.90 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccC-cEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchH
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNEN-QVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGT 160 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~-~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGT 160 (357)
++++|+..+.... .+++.+...|... .+..+....|. .+.+.+.++.+. + .+.+.||++|| |+
T Consensus 26 ~~~liv~d~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~--~~~v~~~~~~~~--------~-~~~d~iIaiGG-Gs 89 (339)
T cd08173 26 GRVLVVTGPTTKS----IAGKKVEALLEDEGEVDVVIVEDAT--YEEVEKVESSAR--------D-IGADFVIGVGG-GR 89 (339)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCeEEEEeCCCC--HHHHHHHHHHhh--------h-cCCCEEEEeCC-ch
Confidence 6788888755432 3666777776532 22111122221 121222222211 1 24567888887 89
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEeCC
Q 018367 161 ASWLLGVVSDLKLPHSPPVATVPLG 185 (357)
Q Consensus 161 VneVln~L~~~~~~~~~plgIIP~G 185 (357)
+..+...+.-. ..+|+..||-=
T Consensus 90 ~~D~aK~~a~~---~~~p~i~iPTT 111 (339)
T cd08173 90 VIDVAKVAAYK---LGIPFISVPTA 111 (339)
T ss_pred HHHHHHHHHHh---cCCCEEEecCc
Confidence 99888877532 46789999954
No 71
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=73.91 E-value=21 Score=35.73 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=49.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCc--EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDG 159 (357)
++++|+..+.+-. ..+++.+.+.|.... +..+....+..-.+.+.+.++.+ ++ .+.+.||++|| |
T Consensus 24 ~r~livt~~~~~~---~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~--------~~-~~~D~IIaiGG-G 90 (375)
T cd08194 24 KRPLIVTDKVMVK---LGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLA--------KE-GGCDVIIALGG-G 90 (375)
T ss_pred CeEEEEcCcchhh---cchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHH--------Hh-cCCCEEEEeCC-c
Confidence 6788887654431 125566666665432 22122111121122233333221 11 24567899988 7
Q ss_pred HHHHHHHHHHh---C-----------C-CCCCCCEEEEeC--CCCcchh
Q 018367 160 TASWLLGVVSD---L-----------K-LPHSPPVATVPL--GTGNNIP 191 (357)
Q Consensus 160 TVneVln~L~~---~-----------~-~~~~~plgIIP~--GTGNDfA 191 (357)
++..+.-.+.- . . ....+|+..||- |||--..
T Consensus 91 S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t 139 (375)
T cd08194 91 SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVT 139 (375)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccC
Confidence 77776655431 0 0 123578999995 6765543
No 72
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=73.14 E-value=19 Score=35.91 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=26.3
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhC---C------------CCCCCCEEEEeC--CCCcch
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDL---K------------LPHSPPVATVPL--GTGNNI 190 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~---~------------~~~~~plgIIP~--GTGNDf 190 (357)
+.+.||++|| |++..+.-.+.-. . ....+|+..||- |||--.
T Consensus 80 ~~d~IiaiGG-Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~ 138 (370)
T cd08551 80 GCDGVIAVGG-GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEV 138 (370)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhc
Confidence 4567888888 6777666554311 0 023678999997 666433
No 73
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=72.76 E-value=14 Score=32.83 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=40.5
Q ss_pred CCCChhhHHHHHHHhhccCcE-EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHHhC
Q 018367 93 GGQLGGKLLLTYRSLLNENQV-IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDL 171 (357)
Q Consensus 93 G~~~g~~~~~~~~~~L~~~~V-~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~~~ 171 (357)
|+..-..+.++....|....+ |++.-.+.....+++...++++... .-...|.++|+++-|--|+.++..
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~--------~~~viIa~AG~~a~Lpgvva~~t~- 78 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEAR--------GADVIIAVAGMSAALPGVVASLTT- 78 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTT--------TESEEEEEEESS--HHHHHHHHSS-
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccC--------CCEEEEEECCCcccchhhheeccC-
Confidence 444444567777777776655 5543322111112222233221100 112458899999999999988863
Q ss_pred CCCCCCCEEEEeCCCC
Q 018367 172 KLPHSPPVATVPLGTG 187 (357)
Q Consensus 172 ~~~~~~plgIIP~GTG 187 (357)
.|.||+ |.-++
T Consensus 79 ----~PVIgv-P~~~~ 89 (150)
T PF00731_consen 79 ----LPVIGV-PVSSG 89 (150)
T ss_dssp ----S-EEEE-EE-ST
T ss_pred ----CCEEEe-ecCcc
Confidence 466776 76544
No 74
>PRK15138 aldehyde reductase; Provisional
Probab=72.41 E-value=19 Score=36.34 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=60.4
Q ss_pred cccccCeEEecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcEEEeeccChhhHHHHHHHHHHH
Q 018367 59 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEK 134 (357)
Q Consensus 59 ~~~~p~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~~~p~~~~~~~~~~l~~ 134 (357)
+|..|..++.-... .. .... .++++|+.-+.+= +...++.++...|....+.......|..-.+.+.+.++.
T Consensus 5 ~~~~P~~i~~G~g~~~~l~~~l~~--~~~~livt~~~~~--~~~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~ 80 (387)
T PRK15138 5 NLHTPTRILFGKGAIAGLREQIPA--DARVLITYGGGSV--KKTGVLDQVLDALKGMDVLEFGGIEPNPTYETLMKAVKL 80 (387)
T ss_pred EEeCCceEEECcCHHHHHHHHHhc--CCeEEEECCCchH--HhcCcHHHHHHHhcCCeEEEECCccCCCCHHHHHHHHHH
Confidence 45668877755321 11 1112 2677777543331 223356667777754333222222222222223333322
Q ss_pred hhhccchhhhhhccCcEEEEEcCchHHHHHHHHHHh---C---------------CCCCCCCEEEEeC--CCCcchhhhc
Q 018367 135 FKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSD---L---------------KLPHSPPVATVPL--GTGNNIPFSF 194 (357)
Q Consensus 135 l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~~---~---------------~~~~~~plgIIP~--GTGNDfARsL 194 (357)
+++ .+.+.||++|| |++-.+.-.+.- . .....+|+..||- |||-.....-
T Consensus 81 --------~~~-~~~D~IIaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~a 150 (387)
T PRK15138 81 --------VRE-EKITFLLAVGG-GSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAGA 150 (387)
T ss_pred --------HHH-cCCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCCE
Confidence 111 24578999998 555554443321 0 0113468999996 8887665544
Q ss_pred CC
Q 018367 195 GW 196 (357)
Q Consensus 195 G~ 196 (357)
-+
T Consensus 151 vi 152 (387)
T PRK15138 151 VI 152 (387)
T ss_pred EE
Confidence 33
No 75
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=72.34 E-value=23 Score=35.63 Aligned_cols=123 Identities=14% Similarity=0.127 Sum_probs=60.6
Q ss_pred cccccCeEEecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCc--EEEeeccChhhHHHHHHHHH
Q 018367 59 NYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDKVLHQLYVTL 132 (357)
Q Consensus 59 ~~~~p~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V~~l~~~~p~~~~~~~~~~l 132 (357)
.|.+|..++.-... .. .......++++|+..+..- ...+++.+...|.... +..+....|..-.+.+.+.+
T Consensus 3 ~~~~p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~---~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~ 79 (379)
T TIGR02638 3 RLILNETSYFGAGAIEDIVDEVKRRGFKKALVVTDKDLI---KFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGV 79 (379)
T ss_pred cccCCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchh---hccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHH
Confidence 46778887765422 11 1122234678888765322 1225566666665322 22222212222122232333
Q ss_pred HHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHHh---CC--------------CCCCCCEEEEeC--CCCcchhhh
Q 018367 133 EKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSD---LK--------------LPHSPPVATVPL--GTGNNIPFS 193 (357)
Q Consensus 133 ~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~~---~~--------------~~~~~plgIIP~--GTGNDfARs 193 (357)
+.+ ++ .+.+.||++|| |++..+.-++.- .. ....+|+..||- |||-...+.
T Consensus 80 ~~~--------~~-~~~D~IiaiGG-GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~ 149 (379)
T TIGR02638 80 AAF--------KA-SGADYLIAIGG-GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTIN 149 (379)
T ss_pred HHH--------Hh-cCCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCE
Confidence 221 11 24577888988 677766644321 10 123578999996 777655544
Q ss_pred c
Q 018367 194 F 194 (357)
Q Consensus 194 L 194 (357)
.
T Consensus 150 a 150 (379)
T TIGR02638 150 Y 150 (379)
T ss_pred E
Confidence 3
No 76
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=71.17 E-value=22 Score=35.06 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCc--EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCch
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDG 159 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDG 159 (357)
++++|+..+. -.+.+++++.+.|.... +|+-....|. .+.+.+.++.+. + .+.+.||++|| |
T Consensus 24 ~~~livt~~~----~~~~~~~~v~~~l~~~~~~~~~~~~~~p~--~~~v~~~~~~~~--------~-~~~d~IIaiGG-G 87 (337)
T cd08177 24 SRALVLTTPS----LATKLAERVASALGDRVAGTFDGAVMHTP--VEVTEAAVAAAR--------E-AGADGIVAIGG-G 87 (337)
T ss_pred CeEEEEcChH----HHHHHHHHHHHHhccCCcEEeCCCCCCCC--HHHHHHHHHHHH--------h-cCCCEEEEeCC-c
Confidence 5677775432 22236777787776543 3331111222 121222222111 1 24567888887 8
Q ss_pred HHHHHHHHHHhCCCCCCCCEEEEeC-CCCcch
Q 018367 160 TASWLLGVVSDLKLPHSPPVATVPL-GTGNNI 190 (357)
Q Consensus 160 TVneVln~L~~~~~~~~~plgIIP~-GTGNDf 190 (357)
++..+.-.+.-. ..+|+..||- -||...
T Consensus 88 s~iD~aK~ia~~---~~~p~i~IPTtatgse~ 116 (337)
T cd08177 88 STIDLAKAIALR---TGLPIIAIPTTLSGSEM 116 (337)
T ss_pred HHHHHHHHHHHH---hcCCEEEEcCCchhhhh
Confidence 999888777532 2578888883 255433
No 77
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.41 E-value=14 Score=36.48 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCcE---EEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQV---IDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V---~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGD 158 (357)
++++|+.-+.+ ...+++.+...|....+ |+.....|. .+.+.+.++. +++ .+.+.||++||
T Consensus 23 ~r~livt~~~~----~~~~~~~v~~~L~~~~i~~~~~~~~~~p~--~~~v~~~~~~--------~~~-~~~D~IIavGG- 86 (351)
T cd08170 23 KRALIIADEFV----LDLVGAKIEESLAAAGIDARFEVFGGECT--RAEIERLAEI--------ARD-NGADVVIGIGG- 86 (351)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHHhCCCeEEEEEeCCcCC--HHHHHHHHHH--------Hhh-cCCCEEEEecC-
Confidence 67777763333 22467777777764322 222211222 1222222221 111 24578999998
Q ss_pred hHHHHHHHHHHhCCCCCCCCEEEEeC--CCCcchhh
Q 018367 159 GTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIPF 192 (357)
Q Consensus 159 GTVneVln~L~~~~~~~~~plgIIP~--GTGNDfAR 192 (357)
|++..+.-.+.-. ..+|+..||- |||--...
T Consensus 87 GS~iD~aK~ia~~---~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 87 GKTLDTAKAVADY---LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred chhhHHHHHHHHH---cCCCEEEeCCccccCccccc
Confidence 7888877776532 3578999996 77765544
No 78
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=69.98 E-value=15 Score=38.40 Aligned_cols=47 Identities=32% Similarity=0.417 Sum_probs=34.4
Q ss_pred cEEEEEcCchHHHHHHH---HHHhCCCCCCCCEEEEeCCCCcchh---hhcCCCC
Q 018367 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIP---FSFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln---~L~~~~~~~~~plgIIP~GTGNDfA---RsLG~~~ 198 (357)
..++++|||||+.-+.. .+.+. ...+++--||-===||+. +++|..+
T Consensus 178 ~~L~vIGGdgT~~~A~~L~ee~~~~--g~~I~VIGIPKTIDNDI~~td~S~GFdT 230 (459)
T PTZ00286 178 NILFTLGGDGTHRGALAIYKELRRR--KLNISVVGIPKTIDNDIPIIDESFGFQT 230 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHh--CCCceEEEeccccCCCCCCcccCcCchH
Confidence 46999999999986543 22222 345888999999999997 5666665
No 79
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=68.57 E-value=18 Score=35.85 Aligned_cols=45 Identities=33% Similarity=0.559 Sum_probs=32.6
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchh---hhcCCCC
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP---FSFGWGK 198 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfA---RsLG~~~ 198 (357)
=+.+|++|||||+.-+. .|.+ ..+++--||.==-||+. .++|.++
T Consensus 95 Id~LivIGGdgS~~~a~-~L~~----~gi~vigiPkTIDNDl~gtd~tiGfdT 142 (324)
T TIGR02483 95 LDALIAIGGDGTLGIAR-RLAD----KGLPVVGVPKTIDNDLEATDYTFGFDT 142 (324)
T ss_pred CCEEEEECCchHHHHHH-HHHh----cCCCEEeeccccCCCCcCCccCcCHHH
Confidence 35799999999997653 4554 24788889988899997 3455443
No 80
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=68.03 E-value=23 Score=34.81 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=30.1
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhh
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPF 192 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfAR 192 (357)
=+.+|++|||||+.-+.. |.+. ..+++--||.=-=||+.-
T Consensus 92 Id~Li~IGGdgs~~~a~~-L~e~---~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 92 IEGLVVIGGDGSYTGAQK-LYEE---GGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred CCEEEEeCCchHHHHHHH-HHHh---hCCCEEeecccccCCCcC
Confidence 357999999999976643 3331 257888899999999974
No 81
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=67.50 E-value=26 Score=34.92 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=26.6
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhC---C----------------CCCCCCEEEEeC--CCCcchh
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDL---K----------------LPHSPPVATVPL--GTGNNIP 191 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~---~----------------~~~~~plgIIP~--GTGNDfA 191 (357)
+.+.||++|| |++..+.-.+.-. . ....+|+..||- |||-...
T Consensus 81 ~~d~IIaiGG-GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t 144 (370)
T cd08192 81 GCDGVIAFGG-GSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVG 144 (370)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhC
Confidence 4577898988 7777776554321 0 013478999996 6664433
No 82
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=67.50 E-value=27 Score=34.98 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccCc--EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCc
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGD 158 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGD 158 (357)
.++++|+..+..-. ...++.+.+.|.... +..+....+..-.+.+.+.++.++ + .+.+.||++||
T Consensus 26 ~~~~lvvt~~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~--------~-~~~d~IIaiGG- 92 (374)
T cd08189 26 VKKVLIVTDKGLVK---LGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYR--------E-NGCDAILAVGG- 92 (374)
T ss_pred CCeEEEEeCcchhh---cccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHH--------h-cCCCEEEEeCC-
Confidence 36788887654321 124566666665432 222222112221222333332211 1 24567888988
Q ss_pred hHHHHHHHHHHh---CC-------------CCCCCCEEEEeC--CCCcchhhh
Q 018367 159 GTASWLLGVVSD---LK-------------LPHSPPVATVPL--GTGNNIPFS 193 (357)
Q Consensus 159 GTVneVln~L~~---~~-------------~~~~~plgIIP~--GTGNDfARs 193 (357)
|++..+.-.+.- .. ....+|+..||- |||-...+.
T Consensus 93 GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~ 145 (374)
T cd08189 93 GSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIA 145 (374)
T ss_pred ccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCe
Confidence 677766654421 10 012368999985 677655544
No 83
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=67.10 E-value=26 Score=35.02 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=22.3
Q ss_pred cEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
+.||++|| |++..+...+... ....+|+..||-
T Consensus 90 d~IVaiGG-G~v~D~ak~~A~~-~~rg~p~i~VPT 122 (354)
T cd08199 90 EPVLAIGG-GVLTDVAGLAASL-YRRGTPYVRIPT 122 (354)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-hcCCCCEEEEcC
Confidence 56777776 8888888877531 123567777776
No 84
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=66.50 E-value=48 Score=33.25 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=27.4
Q ss_pred cCcEEEEEcCchHHHHHHHHH---HhCC------------CCCCCCEEEEeC--CCCcchhh
Q 018367 148 KRLRLIVAGGDGTASWLLGVV---SDLK------------LPHSPPVATVPL--GTGNNIPF 192 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L---~~~~------------~~~~~plgIIP~--GTGNDfAR 192 (357)
+.+.||++|| |++..+.-.+ .... ....+|+..||- |||-..++
T Consensus 85 ~~d~IIaiGG-GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 85 GCDVIIAVGG-GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 4577899988 6776666433 1110 012468999996 88765555
No 85
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=64.67 E-value=27 Score=34.62 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=28.5
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC--CCCcchh
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL--GTGNNIP 191 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~--GTGNDfA 191 (357)
+.+.||++|| |++..+...+... ...|+..||- |||-...
T Consensus 77 ~~d~IIavGG-Gs~~D~aK~ia~~---~~~p~i~VPTtagtgse~t 118 (349)
T cd08550 77 EADVIIGVGG-GKTLDTAKAVADR---LDKPIVIVPTIASTCAASS 118 (349)
T ss_pred CCCEEEEecC-cHHHHHHHHHHHH---cCCCEEEeCCccccCcccc
Confidence 4567888888 8888888877542 3578999996 6664433
No 86
>PLN02564 6-phosphofructokinase
Probab=64.10 E-value=19 Score=37.80 Aligned_cols=47 Identities=30% Similarity=0.408 Sum_probs=31.9
Q ss_pred cEEEEEcCchHHHHHHH---HHHhCCCCCCCCEEEEeCCCCcchh---hhcCCCC
Q 018367 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIP---FSFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln---~L~~~~~~~~~plgIIP~GTGNDfA---RsLG~~~ 198 (357)
+.++++|||||+.-+.. .+.+. ..++++.-||-===||+. +++|..+
T Consensus 178 d~LivIGGDGS~~gA~~L~e~~~~~--g~~i~VIGIPKTIDNDI~~tD~T~GFdT 230 (484)
T PLN02564 178 NQVYIIGGDGTQKGASVIYEEIRRR--GLKVAVAGIPKTIDNDIPVIDKSFGFDT 230 (484)
T ss_pred CEEEEECCchHHHHHHHHHHHHHHc--CCCceEEEecccccCCCcCcccCCCHHH
Confidence 56999999999986543 22222 234558888988899987 3455544
No 87
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=63.73 E-value=42 Score=33.78 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=55.1
Q ss_pred cccccCeEEecCCccc-c-ccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcEEEeeccChhhHHHHHHHHHHHhh
Q 018367 59 NYYIPNYILVSGSEVQ-R-SSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFK 136 (357)
Q Consensus 59 ~~~~p~~~~~~~~~~~-~-~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~~~p~~~~~~~~~~l~~l~ 136 (357)
+|..|..++.-..+.. + .....-.++++.|---| -+..-++.++...|...+++++....|...++-+.++++-.+
T Consensus 5 ~y~nPTki~FGkg~i~~l~~ei~~~~kVLi~YGGGS--IKrnGvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~i~k 82 (384)
T COG1979 5 TYHNPTKILFGKGQIAELREEIPKDAKVLIVYGGGS--IKKNGVYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVEICK 82 (384)
T ss_pred cccCCceEEecCchHHHHHhhccccCeEEEEecCcc--ccccchHHHHHHHhcCceEEEecCCCCCchHHHHHHHHHHHH
Confidence 4777999998764411 1 11222278888884222 233347888999998888888876566666666666665322
Q ss_pred hccchhhhhhccCcEEEEEcC
Q 018367 137 AAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 137 ~~~~~lA~~~~~~~~VVv~GG 157 (357)
+ ++-+-|+++||
T Consensus 83 e---------e~idflLAVGG 94 (384)
T COG1979 83 E---------ENIDFLLAVGG 94 (384)
T ss_pred H---------cCceEEEEecC
Confidence 1 12346888888
No 88
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=63.62 E-value=19 Score=37.35 Aligned_cols=47 Identities=30% Similarity=0.372 Sum_probs=33.0
Q ss_pred cEEEEEcCchHHHHHHHH---HHhCCCCCCCCEEEEeCCCCcchh---hhcCCCC
Q 018367 150 LRLIVAGGDGTASWLLGV---VSDLKLPHSPPVATVPLGTGNNIP---FSFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~---L~~~~~~~~~plgIIP~GTGNDfA---RsLG~~~ 198 (357)
..++++|||||+.-+..- +.+. ...+++--||-===||+. +++|..+
T Consensus 174 ~~L~vIGGdgT~~gA~~l~ee~~~~--g~~I~VIGIPKTIDNDi~~td~S~GFdT 226 (443)
T PRK06830 174 NILFVIGGDGTLRGASAIAEEIERR--GLKISVIGIPKTIDNDINFIQKSFGFET 226 (443)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHh--CCCceEEEeccccCCCCcCcccCCCHHH
Confidence 469999999999766532 2211 235788888988899996 4556554
No 89
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=62.32 E-value=27 Score=34.82 Aligned_cols=41 Identities=24% Similarity=0.214 Sum_probs=29.3
Q ss_pred cEEEEEcCchHHHHHHHHHHhC--CCCCCCCEEEEeCCCCcchh
Q 018367 150 LRLIVAGGDGTASWLLGVVSDL--KLPHSPPVATVPLGTGNNIP 191 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~--~~~~~~plgIIP~GTGNDfA 191 (357)
+.+|++|||||+.-+.. |.+. +....+++--||-=--||+.
T Consensus 94 ~~Lv~IGGd~s~~~a~~-L~e~~~~~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 94 DALVVIGGDGSYTGADL-LTEEWPSKYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred CEEEEeCCHHHHHHHHH-HHHHHHhcCCCccEEEeeecccCCCc
Confidence 56999999999976643 2211 11346889999977789987
No 90
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=61.58 E-value=31 Score=34.21 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=30.4
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchh
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 191 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfA 191 (357)
-+.++++|||||+.-+. .|.+. .+|+--||-===||+.
T Consensus 93 Id~Li~IGGdgs~~~a~-~L~e~----~i~vigiPkTIDNDi~ 130 (317)
T cd00763 93 IDALVVIGGDGSYMGAM-RLTEH----GFPCVGLPGTIDNDIP 130 (317)
T ss_pred CCEEEEECCchHHHHHH-HHHHc----CCCEEEecccccCCCC
Confidence 35799999999998764 35542 5889999999999987
No 91
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=60.76 E-value=44 Score=33.17 Aligned_cols=107 Identities=17% Similarity=0.087 Sum_probs=54.2
Q ss_pred ccccccCeEEecCCc-cc---cccCCC-CCcEEEEEcCCCCCCChhhHHHHHHHhhccC-cEEE-eeccChhhHHHHHHH
Q 018367 58 NNYYIPNYILVSGSE-VQ---RSSLIP-SCPVLVFINSKSGGQLGGKLLLTYRSLLNEN-QVID-LGEKAPDKVLHQLYV 130 (357)
Q Consensus 58 ~~~~~p~~~~~~~~~-~~---~~~~~~-~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~-~V~~-l~~~~p~~~~~~~~~ 130 (357)
+.|..|..++.-..- .. ...... .++++||..+.+-.. ..+.+++.|... .+.. +......+. +.+
T Consensus 6 ~~~~~p~~i~~G~g~l~~l~~~l~~~~~~~~~livtd~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~t~~~---v~~ 78 (350)
T PRK00843 6 HWIQLPRDVVVGHGVLDDIGDVCSDLKLTGRALIVTGPTTKKI----AGDRVEENLEDAGDVEVVIVDEATMEE---VEK 78 (350)
T ss_pred eEEeCCCeEEECCCHHHHHHHHHHHhCCCCeEEEEECCcHHHH----HHHHHHHHHHhcCCeeEEeCCCCCHHH---HHH
Confidence 445568777754321 11 011112 267888888766422 334555555322 2211 222222222 222
Q ss_pred HHHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 131 TLEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 131 ~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
.++.+.+ .+.+.||++|| |++..+...+.- ...+|+..||-
T Consensus 79 ~~~~~~~---------~~~d~IIaiGG-Gsv~D~ak~vA~---~rgip~I~IPT 119 (350)
T PRK00843 79 VEEKAKD---------VNAGFLIGVGG-GKVIDVAKLAAY---RLGIPFISVPT 119 (350)
T ss_pred HHHHhhc---------cCCCEEEEeCC-chHHHHHHHHHH---hcCCCEEEeCC
Confidence 2222111 13467888887 899988877753 24578888884
No 92
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=60.53 E-value=50 Score=33.01 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccC--c--EEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNEN--Q--VIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~--~--V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
++++|+..+.+. .++.+...|... . +|+... .|. .+.+.+.++.. ++ .+.+.||++||
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~~-~p~--~~~v~~~~~~~--------~~-~~~D~IIaiGG 84 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVAG-EPS--VELVDAAVAEA--------RN-AGCDVVIAIGG 84 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCCC-CcC--HHHHHHHHHHH--------Hh-cCCCEEEEecC
Confidence 678888776553 566666666532 2 243322 232 22233333221 11 24577999988
Q ss_pred chHHHHHHHHHHhC---C----------------CCCCCCEEEEeC--CCCcchhh
Q 018367 158 DGTASWLLGVVSDL---K----------------LPHSPPVATVPL--GTGNNIPF 192 (357)
Q Consensus 158 DGTVneVln~L~~~---~----------------~~~~~plgIIP~--GTGNDfAR 192 (357)
|++..+.-.+.-. . ....+|+..||- |||.-..+
T Consensus 85 -GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~ 139 (374)
T cd08183 85 -GSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTK 139 (374)
T ss_pred -chHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCC
Confidence 7777766554210 0 013578999995 67655444
No 93
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=58.71 E-value=2.1 Score=38.09 Aligned_cols=13 Identities=46% Similarity=0.997 Sum_probs=10.9
Q ss_pred EEcCchHHHHHHH
Q 018367 154 VAGGDGTASWLLG 166 (357)
Q Consensus 154 v~GGDGTVneVln 166 (357)
-.|||||+||+-.
T Consensus 130 gdGGDGT~hW~Yd 142 (180)
T PLN00180 130 GDGGDGTGHWVYE 142 (180)
T ss_pred ccCCCCceeeEee
Confidence 4599999999864
No 94
>PRK14072 6-phosphofructokinase; Provisional
Probab=58.53 E-value=40 Score=34.68 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=29.2
Q ss_pred cEEEEEcCchHHHHHHHHHHhC--CCCCCCCEEEEeCCCCcchh
Q 018367 150 LRLIVAGGDGTASWLLGVVSDL--KLPHSPPVATVPLGTGNNIP 191 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~--~~~~~~plgIIP~GTGNDfA 191 (357)
+.+|++|||||+.-+.. |.+. .....+++--||-===||+.
T Consensus 105 d~LivIGGdgS~~~a~~-L~e~~~~~g~~i~vIgIPkTIDNDl~ 147 (416)
T PRK14072 105 GYFFYNGGNDSMDTALK-VSQLAKKMGYPIRCIGIPKTIDNDLP 147 (416)
T ss_pred CEEEEECChHHHHHHHH-HHHHHHHhCCCceEEEeeecccCCCC
Confidence 57999999999976643 2221 01235788889977799998
No 95
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=58.15 E-value=10 Score=38.58 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=43.8
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcCCeeeE--EEE
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNAKEMQI--DSW 226 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~~~~~i--D~~ 226 (357)
.+.||..||||||--+..-..+ .-||+--+-+|| ||+=.- .+.++..+.+..+.+++..-. -+.
T Consensus 169 ~D~iItLGGDGTvL~aS~LFq~----~VPPV~sFslGs-------lGFLtp---f~f~~f~~~l~~v~~~~~~v~lR~RL 234 (409)
T KOG2178|consen 169 FDLIITLGGDGTVLYASSLFQR----SVPPVLSFSLGS-------LGFLTP---FPFANFQEQLARVLNGRAAVNLRMRL 234 (409)
T ss_pred eeEEEEecCCccEEEehhhhcC----CCCCeEEeecCC-------cccccc---ccHHHHHHHHHHHhcCcceEeeeeeE
Confidence 3569999999999766553332 357776666663 454332 234688889999998874221 344
Q ss_pred EEeeee
Q 018367 227 HILMRM 232 (357)
Q Consensus 227 ~v~~~~ 232 (357)
++.+..
T Consensus 235 ~C~i~r 240 (409)
T KOG2178|consen 235 RCSLKR 240 (409)
T ss_pred EEEEEE
Confidence 455443
No 96
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=57.96 E-value=73 Score=31.20 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=24.7
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
.+.||++|| |++..+...+... ..+|+..||-
T Consensus 76 ~d~iIaiGG-Gsv~D~aK~vA~~---~~~p~i~vPT 107 (331)
T cd08174 76 VDAVVGIGG-GKVIDVAKYAAFL---RGIPLSVPTT 107 (331)
T ss_pred CCEEEEeCC-cHHHHHHHHHHhh---cCCCEEEecC
Confidence 467888887 8999988877642 4678888885
No 97
>PLN02834 3-dehydroquinate synthase
Probab=56.57 E-value=43 Score=34.55 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccC----cEEEee--ccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEE
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNEN----QVIDLG--EKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVA 155 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~----~V~~l~--~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~ 155 (357)
++++||.++... ..+.+.+.+.|... .+++.. ...+..-++.+.+.++.+.+.+ +...+.||++
T Consensus 101 ~rvlIVtD~~v~----~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~------~dr~~~VIAi 170 (433)
T PLN02834 101 KRVLVVTNETVA----PLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESR------LDRRCTFVAL 170 (433)
T ss_pred CEEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcC------CCcCcEEEEE
Confidence 778888876543 22566677777532 233221 1111111222333333222111 1123467777
Q ss_pred cCchHHHHHHHHHHhCCCCCCCCEEEEeCC
Q 018367 156 GGDGTASWLLGVVSDLKLPHSPPVATVPLG 185 (357)
Q Consensus 156 GGDGTVneVln~L~~~~~~~~~plgIIP~G 185 (357)
|| |++..+...+... ....+|+..||--
T Consensus 171 GG-Gsv~D~ak~~A~~-y~rgiplI~VPTT 198 (433)
T PLN02834 171 GG-GVIGDMCGFAAAS-YQRGVNFVQIPTT 198 (433)
T ss_pred CC-hHHHHHHHHHHHH-hcCCCCEEEECCc
Confidence 77 8888888765321 1246788888873
No 98
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=56.07 E-value=62 Score=32.22 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=26.6
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhC---C----------------CCCCCCEEEEeC--CCCcch
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDL---K----------------LPHSPPVATVPL--GTGNNI 190 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~---~----------------~~~~~plgIIP~--GTGNDf 190 (357)
+.+.||++|| |++..+...+.-. . ....+|+..||- |||--.
T Consensus 77 ~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~ 139 (367)
T cd08182 77 GPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEV 139 (367)
T ss_pred CcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhh
Confidence 4467888887 7777776555321 0 124578999996 666544
No 99
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=55.87 E-value=40 Score=33.34 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=25.1
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
+.+.||++|| |++..+...+.-. ..+|+..||-
T Consensus 80 ~~d~IIaIGG-Gs~~D~aK~vA~~---~~~p~i~IPT 112 (348)
T cd08175 80 DTDLIIAVGS-GTINDITKYVSYK---TGIPYISVPT 112 (348)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHh---cCCCEEEecC
Confidence 4577999998 8888888777542 3678899995
No 100
>PRK03202 6-phosphofructokinase; Provisional
Probab=54.45 E-value=44 Score=33.15 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=30.3
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhh
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPF 192 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfAR 192 (357)
=+.+|++|||||+.-+.. |.+ ..+++--||.===||+.-
T Consensus 94 Id~Li~IGGd~s~~~a~~-L~e----~~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 94 IDALVVIGGDGSYMGAKR-LTE----HGIPVIGLPGTIDNDIAG 132 (320)
T ss_pred CCEEEEeCChHHHHHHHH-HHh----cCCcEEEecccccCCCCC
Confidence 357999999999987643 544 267888899888999883
No 101
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=53.55 E-value=90 Score=31.19 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=38.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCcEEEeeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcCchHH
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQVIDLGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGGDGTA 161 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V~~l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GGDGTV 161 (357)
++++++..+.-. ..+.+.+++.|....++.+....+..-++.+.+.++.+.+.+ ....+.||++|| |++
T Consensus 20 ~r~lIVtD~~v~----~l~~~~l~~~L~~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~------~~r~d~iIaiGG-Gsv 88 (346)
T cd08196 20 ENDVFIVDANVA----ELYRDRLDLPLDAAPVIAIDATEENKSLEAVSSVIESLRQNG------ARRNTHLVAIGG-GII 88 (346)
T ss_pred CeEEEEECccHH----HHHHHHHHHHhcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC------CCCCcEEEEECC-hHH
Confidence 678888876542 225666777665433332222122222222333333222111 122356777777 888
Q ss_pred HHHHHHHH
Q 018367 162 SWLLGVVS 169 (357)
Q Consensus 162 neVln~L~ 169 (357)
..+...+.
T Consensus 89 ~D~ak~vA 96 (346)
T cd08196 89 QDVTTFVA 96 (346)
T ss_pred HHHHHHHH
Confidence 88777664
No 102
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=53.32 E-value=79 Score=31.95 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=13.9
Q ss_pred cCcEEEEEcCchHHHHHHHHH
Q 018367 148 KRLRLIVAGGDGTASWLLGVV 168 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L 168 (357)
+.+.||++|| |++..+.-.+
T Consensus 78 ~~D~IIaiGG-GS~iD~AK~i 97 (398)
T cd08178 78 KPDTIIALGG-GSPMDAAKIM 97 (398)
T ss_pred CCCEEEEeCC-ccHHHHHHHH
Confidence 4578999999 6666665544
No 103
>PLN02884 6-phosphofructokinase
Probab=53.15 E-value=46 Score=34.22 Aligned_cols=49 Identities=29% Similarity=0.344 Sum_probs=32.6
Q ss_pred CcEEEEEcCchHHHHHHHHHHhC--CCCCCCCEEEEeCCCCcchh---hhcCCCC
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDL--KLPHSPPVATVPLGTGNNIP---FSFGWGK 198 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~--~~~~~~plgIIP~GTGNDfA---RsLG~~~ 198 (357)
-+.+|++|||||+.-+.. |.+. .....+++--||-===||+. .++|..+
T Consensus 144 Id~LivIGGdgS~~~a~~-L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdT 197 (411)
T PLN02884 144 INMLFVLGGNGTHAGANA-IHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDT 197 (411)
T ss_pred CCEEEEECCchHHHHHHH-HHHHHHHcCCCceEEeccccccCCCcCcccCCCHHH
Confidence 357999999999976543 2220 01235788889988899986 3455544
No 104
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=52.84 E-value=1.1e+02 Score=31.07 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=25.0
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
+.+.||++|| |++..+...+... ....+|+-.||-
T Consensus 99 r~~~IIalGG-G~v~D~ag~vA~~-~~rGip~I~IPT 133 (369)
T cd08198 99 RHSYVIAIGG-GAVLDAVGYAAAT-AHRGVRLIRIPT 133 (369)
T ss_pred cCcEEEEECC-hHHHHHHHHHHHH-hcCCCCEEEECC
Confidence 3457888888 9999988777542 234688888884
No 105
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=52.20 E-value=96 Score=31.53 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhccCc----EEEee-------ccChh-hHHHHHHHHHHHhhhccchhhhhhcc
Q 018367 81 SCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ----VIDLG-------EKAPD-KVLHQLYVTLEKFKAAGDVFASEIEK 148 (357)
Q Consensus 81 ~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~----V~~l~-------~~~p~-~~~~~~~~~l~~l~~~~~~lA~~~~~ 148 (357)
.++++||..+.--. ....+++.+.+.|.... +++.. ...|. +....+...+.+ . ...+
T Consensus 42 ~~r~liVtD~~v~~-~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~---~------~~dr 111 (389)
T PRK06203 42 PKKVLVVIDSGVLR-AHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINR---H------GIDR 111 (389)
T ss_pred CCeEEEEECchHHH-hhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHH---c------CCCC
Confidence 46788888754432 11235677777775322 12211 11222 223333333321 1 1123
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
.+.||++|| |++..+...+... ....+|+-.||-
T Consensus 112 ~d~IIaiGG-Gsv~D~ak~iA~~-~~rgip~I~IPT 145 (389)
T PRK06203 112 HSYVLAIGG-GAVLDMVGYAAAT-AHRGVRLIRIPT 145 (389)
T ss_pred CceEEEeCC-cHHHHHHHHHHHH-hcCCCCEEEEcC
Confidence 456888887 8888887766432 124678889994
No 106
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=51.96 E-value=34 Score=34.00 Aligned_cols=99 Identities=21% Similarity=0.168 Sum_probs=52.5
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhcc--Cc--EEE-eeccChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEcC
Q 018367 83 PVLVFINSKSGGQLGGKLLLTYRSLLNE--NQ--VID-LGEKAPDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAGG 157 (357)
Q Consensus 83 ~vlvIvNP~SG~~~g~~~~~~~~~~L~~--~~--V~~-l~~~~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~GG 157 (357)
+++||..+ +- ....+++.+...|.. .. +|+ +....+.+. +...++.+++ .+.+.||++||
T Consensus 23 r~lvVt~~-~~--~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~---v~~~~~~~~~---------~~~D~IIaiGG 87 (366)
T PF00465_consen 23 RVLVVTDP-SL--SKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLED---VDEAAEQARK---------FGADCIIAIGG 87 (366)
T ss_dssp EEEEEEEH-HH--HHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHH---HHHHHHHHHH---------TTSSEEEEEES
T ss_pred CEEEEECc-hH--HhCccHHHHHHHHhhCceEEEEEecCCCCCcHHH---HHHHHHHHHh---------cCCCEEEEcCC
Confidence 88899887 33 222367788877743 23 343 222222222 3333332211 24578999998
Q ss_pred chHHHHHHHHHH---hCC-------------CCCCCCEEEEeC--CCCcchhhhcCCC
Q 018367 158 DGTASWLLGVVS---DLK-------------LPHSPPVATVPL--GTGNNIPFSFGWG 197 (357)
Q Consensus 158 DGTVneVln~L~---~~~-------------~~~~~plgIIP~--GTGNDfARsLG~~ 197 (357)
|++..+.-.+. ... ....+|+..||- |||-.+.+...+.
T Consensus 88 -GS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi~ 144 (366)
T PF00465_consen 88 -GSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAVIY 144 (366)
T ss_dssp -HHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEEEE
T ss_pred -CCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccccccccccccc
Confidence 56655554442 211 012378999996 6666666554443
No 107
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=51.01 E-value=59 Score=32.02 Aligned_cols=33 Identities=30% Similarity=0.254 Sum_probs=24.7
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
+.+.||++|| |++..+...+.-. ..+|+..||-
T Consensus 80 ~~d~IIaiGG-Gsv~D~aK~iA~~---~gip~I~VPT 112 (332)
T cd08549 80 DTEFLLGIGS-GTIIDLVKFVSFK---VGKPFISVPT 112 (332)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHH---cCCCEEEeCC
Confidence 4467888988 8888888777532 3678888885
No 108
>PRK14071 6-phosphofructokinase; Provisional
Probab=50.70 E-value=63 Score=32.59 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=32.1
Q ss_pred cEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchh---hhcCCCC
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP---FSFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfA---RsLG~~~ 198 (357)
+.+|++|||||+.-+ ..|.+. ..+++--||-===||+. .++|.++
T Consensus 109 d~Li~IGGdgS~~~a-~~L~~~---~~i~vIgiPkTIDNDl~~td~t~Gf~T 156 (360)
T PRK14071 109 DALIGIGGDGSLAIL-RRLAQQ---GGINLVGIPKTIDNDVGATEVSIGFDT 156 (360)
T ss_pred CEEEEECChhHHHHH-HHHHHh---cCCcEEEecccccCCCcCcccCcChhH
Confidence 569999999998643 445441 26888889988899986 3455544
No 109
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=50.04 E-value=1.1e+02 Score=30.55 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=27.2
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhC---C------------CCCCCCEEEEeC--CCCcchhh
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDL---K------------LPHSPPVATVPL--GTGNNIPF 192 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~---~------------~~~~~plgIIP~--GTGNDfAR 192 (357)
+.+.||++|| |++..+...+.-. . ....+|+..||- |||-....
T Consensus 83 ~~D~IIaiGG-Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~ 143 (376)
T cd08193 83 GADGVIGFGG-GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTP 143 (376)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCC
Confidence 4567999988 7777776554321 0 023578899995 56644433
No 110
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=47.72 E-value=1.4e+02 Score=33.44 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=46.4
Q ss_pred ccccccCeEEecCCc-ccccc-CCCCCcEEEEEcCCCCCCChhhHHHHHHHhhc--cCc--EEEeeccChhhHHHHHHHH
Q 018367 58 NNYYIPNYILVSGSE-VQRSS-LIPSCPVLVFINSKSGGQLGGKLLLTYRSLLN--ENQ--VIDLGEKAPDKVLHQLYVT 131 (357)
Q Consensus 58 ~~~~~p~~~~~~~~~-~~~~~-~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~--~~~--V~~l~~~~p~~~~~~~~~~ 131 (357)
+-|..|+.++..... ..+.. -...++++|+..+..- ...+++.+.+.|. ... +..+....|..-.+.+.+.
T Consensus 455 ~~~~~P~~i~~G~g~l~~l~~~l~~~~~~lvVtd~~~~---~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~ 531 (862)
T PRK13805 455 QWFKVPKKIYFERGSLPYLLDELDGKKRAFIVTDRFMV---ELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKG 531 (862)
T ss_pred eeeecCCeEEECCCHHHHHHHHhcCCCEEEEEECcchh---hcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHH
Confidence 446778877765421 11110 1134678888764332 1225666777665 322 2222221222212223233
Q ss_pred HHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHH
Q 018367 132 LEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVV 168 (357)
Q Consensus 132 l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L 168 (357)
++.++ + .+.+.||++|| |++..+...+
T Consensus 532 ~~~~~--------~-~~~D~IIaiGG-GSviD~AK~i 558 (862)
T PRK13805 532 AELMR--------S-FKPDTIIALGG-GSPMDAAKIM 558 (862)
T ss_pred HHHHH--------h-cCCCEEEEeCC-chHHHHHHHH
Confidence 32211 1 24577888888 6776666554
No 111
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=47.54 E-value=48 Score=34.05 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=29.3
Q ss_pred cEEEEEcCchHHHHHHHH---HHhCCCCCCCCEEEEeCCCCcchh
Q 018367 150 LRLIVAGGDGTASWLLGV---VSDLKLPHSPPVATVPLGTGNNIP 191 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~---L~~~~~~~~~plgIIP~GTGNDfA 191 (357)
+.+|++|||||..-+..- +.+. ...+++--||-===||+.
T Consensus 114 d~Li~IGGdgS~~~a~~L~~~~~~~--g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 114 DILHTIGGDDTNTTAADLAAYLAEN--GYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred CEEEEECChhHHHHHHHHHHHHHHh--CCCceEEEeeeeeeCCCC
Confidence 569999999999766432 2211 236889999998899985
No 112
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=45.27 E-value=1.6e+02 Score=29.82 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=60.8
Q ss_pred ccccccCeEEecCCc-cc---cccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCcE-E-EeeccChhhHHHHHHHH
Q 018367 58 NNYYIPNYILVSGSE-VQ---RSSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQV-I-DLGEKAPDKVLHQLYVT 131 (357)
Q Consensus 58 ~~~~~p~~~~~~~~~-~~---~~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~V-~-~l~~~~p~~~~~~~~~~ 131 (357)
..|..|..++.-... .. .......++++|+.-+. -....+++++.+.|....+ + ......|..-.+.+.+.
T Consensus 22 ~~f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~~---~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~ 98 (395)
T PRK15454 22 KTFSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMADSF---LHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAA 98 (395)
T ss_pred ceeecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcc---hhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHH
Confidence 467889988765422 11 11122335565553321 1122356667777764332 1 11111222212223333
Q ss_pred HHHhhhccchhhhhhccCcEEEEEcCchHHHHHHHHHH---hCC------------CCCCCCEEEEeC--CCCcchhhhc
Q 018367 132 LEKFKAAGDVFASEIEKRLRLIVAGGDGTASWLLGVVS---DLK------------LPHSPPVATVPL--GTGNNIPFSF 194 (357)
Q Consensus 132 l~~l~~~~~~lA~~~~~~~~VVv~GGDGTVneVln~L~---~~~------------~~~~~plgIIP~--GTGNDfARsL 194 (357)
++. +++ .+.+.||++|| |++-.+.-++. ... ....+|+..||- |||-...+.-
T Consensus 99 ~~~--------~r~-~~~D~IiavGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~a 168 (395)
T PRK15454 99 VAQ--------LRE-SGCDGVIAFGG-GSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVT 168 (395)
T ss_pred HHH--------HHh-cCcCEEEEeCC-hHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCCeE
Confidence 321 111 25678999998 55555443331 110 113578999995 7877666654
Q ss_pred CC
Q 018367 195 GW 196 (357)
Q Consensus 195 G~ 196 (357)
-+
T Consensus 169 vi 170 (395)
T PRK15454 169 VI 170 (395)
T ss_pred EE
Confidence 33
No 113
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=44.96 E-value=11 Score=32.92 Aligned_cols=13 Identities=69% Similarity=1.124 Sum_probs=10.7
Q ss_pred cEEEEEcCchHHH
Q 018367 150 LRLIVAGGDGTAS 162 (357)
Q Consensus 150 ~~VVv~GGDGTVn 162 (357)
-|+|+||||||-.
T Consensus 86 QRlIvsGGegtss 98 (160)
T PF12219_consen 86 QRLIVSGGEGTSS 98 (160)
T ss_dssp -EEEEESSSSSSG
T ss_pred cEEEEeCCCCccc
Confidence 4799999999864
No 114
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=43.74 E-value=34 Score=33.21 Aligned_cols=39 Identities=36% Similarity=0.451 Sum_probs=29.6
Q ss_pred cEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhh
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPF 192 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfAR 192 (357)
+.+|++|||||+..+. .|.+. ..+++-.||.=--||+.-
T Consensus 94 d~Li~IGG~gs~~~a~-~L~~~---~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 94 DALIVIGGDGSMKGAH-KLSEE---FGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp SEEEEEESHHHHHHHH-HHHHH---HHSEEEEEEEETTSSCTT
T ss_pred CEEEEecCCCHHHHHH-HHHhc---CceEEEEEeccccCCcCC
Confidence 5799999999987763 34421 237899999988899875
No 115
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=43.34 E-value=1.5e+02 Score=29.79 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=50.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhccCc--EEEeecc---ChhhHHHHHHHHHHHhhhccchhhhhhccCcEEEEEc
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEK---APDKVLHQLYVTLEKFKAAGDVFASEIEKRLRLIVAG 156 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V~~l~~~---~p~~~~~~~~~~l~~l~~~~~~lA~~~~~~~~VVv~G 156 (357)
++++|+..+..-. ..+++.+.+.|.... +...... .|... +...++. +++ .+.+.||++|
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~---v~~~~~~--------~~~-~~~D~IIaiG 87 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDLPRSE---LCDAASA--------AAR-AGPDVIIGLG 87 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCcCHHH---HHHHHHH--------HHh-cCCCEEEEeC
Confidence 6788887644432 245666666665432 2212221 12222 2222221 111 2457788898
Q ss_pred CchHHHHHHHHHHhC---C------------CCCCCCEEEEeC--CCCcchhhh
Q 018367 157 GDGTASWLLGVVSDL---K------------LPHSPPVATVPL--GTGNNIPFS 193 (357)
Q Consensus 157 GDGTVneVln~L~~~---~------------~~~~~plgIIP~--GTGNDfARs 193 (357)
| |++..+.-.+.-. . ....+|+..||- |||-...+.
T Consensus 88 G-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 88 G-GSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred C-chHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 8 7887777655310 0 012578999994 677655553
No 116
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=42.89 E-value=65 Score=34.92 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.6
Q ss_pred cEEEEEcCchHHHHHHH--H-HHhCCCCCCCCEEEEeCCCCcchh-----hhcCCCC
Q 018367 150 LRLIVAGGDGTASWLLG--V-VSDLKLPHSPPVATVPLGTGNNIP-----FSFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln--~-L~~~~~~~~~plgIIP~GTGNDfA-----RsLG~~~ 198 (357)
+.+|++|||||...+.- . +.+. ...+++--||-==-||+. .++|.++
T Consensus 175 d~LvvIGGddS~~~A~~Lae~~~~~--~~~i~VIGIPKTIDNDL~~~~td~s~GFdT 229 (610)
T PLN03028 175 DGLVIIGGVTSNTDAAQLAETFAEA--KCKTKVVGVPVTLNGDLKNQFVETNVGFDT 229 (610)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHc--CCCceEEEeceeeeCCCCCCCCCCCcCHHH
Confidence 46999999999876632 1 2222 236788888987799997 5566554
No 117
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=42.58 E-value=70 Score=34.27 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=32.9
Q ss_pred cEEEEEcCchHHHHHHHHHHhC--CCCCCCCEEEEeCCCCcchh-----hhcCCCC
Q 018367 150 LRLIVAGGDGTASWLLGVVSDL--KLPHSPPVATVPLGTGNNIP-----FSFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~--~~~~~~plgIIP~GTGNDfA-----RsLG~~~ 198 (357)
+.+|++|||||...+.. |.+. .....+++--||-==-||+. .++|.++
T Consensus 166 d~LviIGGd~S~~~A~~-Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdT 220 (555)
T PRK07085 166 DGLVIIGGDDSNTNAAI-LAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDT 220 (555)
T ss_pred CEEEEeCCchHHHHHHH-HHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHH
Confidence 46999999999976643 2221 01246788889988889996 3555554
No 118
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=41.73 E-value=84 Score=34.88 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=29.7
Q ss_pred cEEEEEcCchHHHHHHHHHHhCC---CCCCCCEEEEeCCCCcchh
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLK---LPHSPPVATVPLGTGNNIP 191 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~---~~~~~plgIIP~GTGNDfA 191 (357)
+.+|++|||||..-+.. |.+.. ....+|+-.||.===||++
T Consensus 480 d~LivIGGdgs~~~a~~-L~~~~~~~~~~~i~vvgIPkTIDNDi~ 523 (745)
T TIGR02478 480 DGLLIIGGFEAFEALLQ-LEQAREKYPAFRIPMVVIPATISNNVP 523 (745)
T ss_pred CEEEEeCChHHHHHHHH-HHHHHhhCCCCCccEEEecccccCCCC
Confidence 56999999999976543 22211 1135889999999999997
No 119
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=41.42 E-value=66 Score=34.32 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=32.0
Q ss_pred cEEEEEcCchHHHHHHHHHHhC--CCCCCCCEEEEeCCCCcchhh-----hcCCCC
Q 018367 150 LRLIVAGGDGTASWLLGVVSDL--KLPHSPPVATVPLGTGNNIPF-----SFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~--~~~~~~plgIIP~GTGNDfAR-----sLG~~~ 198 (357)
+.+|++|||||+..+.. |.+. .....+++--||-==-||+.. ++|.++
T Consensus 163 d~LviIGGdgS~~~A~~-Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdT 217 (539)
T TIGR02477 163 DGLVIIGGDDSNTNAAL-LAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDT 217 (539)
T ss_pred CEEEEeCCchHHHHHHH-HHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHH
Confidence 46999999999876642 2220 012357788889877899975 555544
No 120
>PRK10586 putative oxidoreductase; Provisional
Probab=39.19 E-value=1.6e+02 Score=29.55 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=24.9
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCC
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG 187 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTG 187 (357)
.+.||++|| |++..+.-.+... ..+|+..||-=-+
T Consensus 87 ~d~iiavGG-Gs~iD~aK~~a~~---~~~p~i~vPT~a~ 121 (362)
T PRK10586 87 RQVVIGVGG-GALLDTAKALARR---LGLPFVAIPTIAA 121 (362)
T ss_pred CCEEEEecC-cHHHHHHHHHHhh---cCCCEEEEeCCcc
Confidence 467888887 7777777777542 3679999996433
No 121
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=37.56 E-value=3.4e+02 Score=27.03 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=28.6
Q ss_pred cCcEEEEEcCchHHHHHHHHHH---hCC------------CCCCCCEEEEeC--CCCcchhhhcC
Q 018367 148 KRLRLIVAGGDGTASWLLGVVS---DLK------------LPHSPPVATVPL--GTGNNIPFSFG 195 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~---~~~------------~~~~~plgIIP~--GTGNDfARsLG 195 (357)
+.+.||++|| |++-.+.-.+. ... ....+|+..||- |||--..+.--
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~aV 144 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTAV 144 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcEE
Confidence 4577999988 66666554442 110 013467999994 88876665543
No 122
>PTZ00287 6-phosphofructokinase; Provisional
Probab=36.70 E-value=73 Score=37.73 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=31.2
Q ss_pred cEEEEEcCchHHHHHHHHHHhCCCCCCCC--EEEEeCCCCcchhh-----hcCCCC
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPP--VATVPLGTGNNIPF-----SFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~~~~~~p--lgIIP~GTGNDfAR-----sLG~~~ 198 (357)
+.+|++|||||+..+.- |.+.-.....+ +--||.==-||+.. ++|..+
T Consensus 930 D~LVvIGGDgS~t~A~~-LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDT 984 (1419)
T PTZ00287 930 NGLVMPGSNVTITEAAL-LAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDS 984 (1419)
T ss_pred CEEEEECCchHHHHHHH-HHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHH
Confidence 56999999999976542 22200012334 77778777899986 666665
No 123
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=35.78 E-value=1.3e+02 Score=33.55 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=28.3
Q ss_pred CcEEEEEcCchHHHHHH----------HHHHhC--------CCCCCCCEEEEeCCCCcchh
Q 018367 149 RLRLIVAGGDGTASWLL----------GVVSDL--------KLPHSPPVATVPLGTGNNIP 191 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVl----------n~L~~~--------~~~~~~plgIIP~GTGNDfA 191 (357)
=+.+|++|||||+.-+. ..+.+. +....+++--||-===||+.
T Consensus 95 Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~ 155 (745)
T TIGR02478 95 IDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMC 155 (745)
T ss_pred CCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCC
Confidence 35799999999987653 122210 01246788889955589998
No 124
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=35.68 E-value=1.4e+02 Score=27.12 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=36.2
Q ss_pred CcEEEEEcCchHHH-----HHHHHHHhCCCCCCCCE-EEE---------eCCCCcchhhhcCCCCCC--CCCchHHHHHH
Q 018367 149 RLRLIVAGGDGTAS-----WLLGVVSDLKLPHSPPV-ATV---------PLGTGNNIPFSFGWGKKN--PNTDQQAVLSF 211 (357)
Q Consensus 149 ~~~VVv~GGDGTVn-----eVln~L~~~~~~~~~pl-gII---------P~GTGNDfARsLG~~~~~--~~~~~~~~~~~ 211 (357)
..+|+++=|||+++ |.++..... ..|+ .|+ |.+...+.++.+||.... .+.+.+.+.++
T Consensus 97 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~----~~~li~vvdnN~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~a 172 (195)
T cd02007 97 KRKVIAVIGDGALTGGMAFEALNNAGYL----KSNMIVILNDNEMSISPNVGTPGNLFEELGFRYIGPVDGHNIEALIKV 172 (195)
T ss_pred CCeEEEEEcccccccChHHHHHHHHHHh----CCCEEEEEECCCcccCCCCCCHHHHHHhcCCCccceECCCCHHHHHHH
Confidence 45799999999997 444433332 1222 222 223456677889997643 34444555555
Q ss_pred HHHHH
Q 018367 212 LEQVK 216 (357)
Q Consensus 212 l~~I~ 216 (357)
++...
T Consensus 173 ~~~a~ 177 (195)
T cd02007 173 LKEVK 177 (195)
T ss_pred HHHHH
Confidence 55443
No 125
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=35.05 E-value=2.1e+02 Score=29.25 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=54.7
Q ss_pred CCCCCChhhHHHHHHHhhccC-cEEEeeccChhhHHHHHHHHHHHhhhc--------------cc-hhhhhh-ccCcEEE
Q 018367 91 KSGGQLGGKLLLTYRSLLNEN-QVIDLGEKAPDKVLHQLYVTLEKFKAA--------------GD-VFASEI-EKRLRLI 153 (357)
Q Consensus 91 ~SG~~~g~~~~~~~~~~L~~~-~V~~l~~~~p~~~~~~~~~~l~~l~~~--------------~~-~lA~~~-~~~~~VV 153 (357)
.+|+--.--++.-+..+|.+. .++.+....+.... .+.+.+.++..+ +| .+.... ...+.||
T Consensus 95 ~agNvp~~~~~S~~~~lL~gn~nivK~ss~d~~~~~-~l~~~l~~~~~~~~l~~~i~v~~~~~~d~~~~~~~~~~~D~vv 173 (399)
T PF05893_consen 95 AAGNVPLVGFYSLVRGLLSGNANIVKLSSRDPFLAP-ALLRSLAEIDPEHPLADSIAVVYWPGGDEELEEALSQQADAVV 173 (399)
T ss_pred cCCCccchHHHHHHHHHHhCCceEEECCCCchhHHH-HHHHHHHhhCccchhhhcEEEEEecCCchHHHHHHHHHCCEEE
Confidence 667777777788888888653 45666554444332 233444433221 11 111222 3467899
Q ss_pred EEcCchHHHHHHHHHHhC-C---CCCCCCEEEEeCCC
Q 018367 154 VAGGDGTASWLLGVVSDL-K---LPHSPPVATVPLGT 186 (357)
Q Consensus 154 v~GGDGTVneVln~L~~~-~---~~~~~plgIIP~GT 186 (357)
+-|||-||.++-.-+... + ..++..+++|-.-.
T Consensus 174 ~wGgd~ti~~ir~~~~~~~~~i~fg~k~S~avi~~~~ 210 (399)
T PF05893_consen 174 AWGGDETIRAIRQPLPPGARLIEFGPKYSFAVIDAEA 210 (399)
T ss_pred EeCCHHHHHHHHHHcCCCCcEeeeCCceEEEEEcCch
Confidence 999999999998743211 1 24566677775543
No 126
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=35.04 E-value=1.6e+02 Score=31.34 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=24.8
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
+.+.||++|| |++..+...+... ....+|+..||-
T Consensus 269 r~D~IIAIGG-Gsv~D~AKfvA~~-y~rGi~~i~vPT 303 (542)
T PRK14021 269 RSDAIVGLGG-GAATDLAGFVAAT-WMRGIRYVNCPT 303 (542)
T ss_pred CCcEEEEEcC-hHHHHHHHHHHHH-HHcCCCEEEeCC
Confidence 3566888887 9999988877531 114678888887
No 127
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.13 E-value=91 Score=27.16 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=37.4
Q ss_pred EEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHc
Q 018367 151 RLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKN 217 (357)
Q Consensus 151 ~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~ 217 (357)
.-+.++|+- ..+++..+... ...++-+-+|=+|| ||+.+... . ..-.+++.++++.+..
T Consensus 44 ~n~g~~G~t-~~~~~~~l~~~-~~~~pd~Vii~~G~-ND~~~~~~--~---~~~~~~l~~li~~i~~ 102 (191)
T cd01836 44 RLFAKTGAT-SADLLRQLAPL-PETRFDVAVISIGV-NDVTHLTS--I---ARWRKQLAELVDALRA 102 (191)
T ss_pred EEEecCCcC-HHHHHHHHHhc-ccCCCCEEEEEecc-cCcCCCCC--H---HHHHHHHHHHHHHHHh
Confidence 466888984 46666666541 23466788888886 78765321 1 1224577788888875
No 128
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=33.94 E-value=55 Score=31.28 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=23.2
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcc
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNN 189 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGND 189 (357)
.+.||++|| ||++.+.--+... ...|+..+|-=-.||
T Consensus 76 ~d~ii~vGg-G~i~D~~K~~A~~---~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 76 ADLIIGVGG-GTIIDIAKYAAFE---LGIPFISVPTAASHD 112 (250)
T ss_dssp --EEEEEES-HHHHHHHHHHHHH---HT--EEEEES--SSG
T ss_pred CCEEEEeCC-cHHHHHHHHHHHh---cCCCEEEeccccccc
Confidence 356778877 9999998877542 367888888765555
No 129
>PRK06756 flavodoxin; Provisional
Probab=33.62 E-value=2e+02 Score=24.33 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhcc
Q 018367 82 CPVLVFINSKSGGQLGGKLLLTYRSLLNE 110 (357)
Q Consensus 82 ~~vlvIvNP~SG~~~g~~~~~~~~~~L~~ 110 (357)
++++|||=. ..|..+++.+.+.+.|..
T Consensus 2 mkv~IiY~S--~tGnTe~vA~~ia~~l~~ 28 (148)
T PRK06756 2 SKLVMIFAS--MSGNTEEMADHIAGVIRE 28 (148)
T ss_pred ceEEEEEEC--CCchHHHHHHHHHHHHhh
Confidence 468888855 445667777887777653
No 130
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=33.59 E-value=2.3e+02 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.059 Sum_probs=21.5
Q ss_pred ccCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeC
Q 018367 147 EKRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPL 184 (357)
Q Consensus 147 ~~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~ 184 (357)
...+.+|..|| +|+.|++.. ..|.-++|.
T Consensus 240 ~~aDl~Is~~G-~T~~E~~a~--------g~P~i~i~~ 268 (279)
T TIGR03590 240 NEADLAIGAAG-STSWERCCL--------GLPSLAICL 268 (279)
T ss_pred HHCCEEEECCc-hHHHHHHHc--------CCCEEEEEe
Confidence 45677888999 999998631 467777776
No 131
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=33.35 E-value=1.4e+02 Score=26.84 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=40.5
Q ss_pred cEEEEEcCchHHHHHHHHHHhCCCCCC-CCEEEE------------eCCC--Ccc---hhhhcCCCCCCCCCchHHHHHH
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLKLPHS-PPVATV------------PLGT--GNN---IPFSFGWGKKNPNTDQQAVLSF 211 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~~~~~-~plgII------------P~GT--GND---fARsLG~~~~~~~~~~~~~~~~ 211 (357)
..||++-|||+...-++.|.-...... +.+-|| +..+ .-| +|+++|+.....-.+.++++++
T Consensus 60 ~~Vv~i~GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~~~~~v~~~~~l~~a 139 (181)
T TIGR03846 60 RTVIVIDGDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIRNVEKVADEEELRDA 139 (181)
T ss_pred CcEEEEEcchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCCeEEEeCCHHHHHHH
Confidence 458999999999866665532110111 222222 1222 123 6888998753212345677777
Q ss_pred HHHHHcCCeeeEEE
Q 018367 212 LEQVKNAKEMQIDS 225 (357)
Q Consensus 212 l~~I~~~~~~~iD~ 225 (357)
++.+....+.-||+
T Consensus 140 l~a~~~~~p~li~v 153 (181)
T TIGR03846 140 LKALAMKGPTFIHV 153 (181)
T ss_pred HHHHcCCCCEEEEE
Confidence 77444444555554
No 132
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=33.03 E-value=1.1e+02 Score=32.83 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=29.1
Q ss_pred cEEEEEcCchHHHHHHH---HHHhCCCCCCCCEEEEeCCCCcchhh
Q 018367 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIPF 192 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln---~L~~~~~~~~~plgIIP~GTGNDfAR 192 (357)
+.+|++|||||...+.. .+.+. ...+++--||-==-||+.-
T Consensus 168 d~LviIGGddS~~~A~~Lae~~~~~--g~~i~VIGVPKTIDNDl~~ 211 (550)
T cd00765 168 DALVVIGGDDSNTNAALLAENFRSK--GLKTRVIGVPKTIDGDLKN 211 (550)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhc--CCCceEEEEeeeecCCCCC
Confidence 46999999999876542 12212 2357788889888999986
No 133
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=32.28 E-value=58 Score=28.00 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=32.3
Q ss_pred EEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHc
Q 018367 152 LIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKN 217 (357)
Q Consensus 152 VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~ 217 (357)
-..++||.| .+++..+.+.-...+|.+.+|=+|| ||+.+.. +. ..-.+++.++++.+..
T Consensus 27 N~Gi~G~~~-~~~~~~~~~~~~~~~p~~vvi~~G~-ND~~~~~--~~---~~~~~~~~~lv~~i~~ 85 (171)
T cd04502 27 NRGFGGSTL-ADCLHYFDRLVLPYQPRRVVLYAGD-NDLASGR--TP---EEVLRDFRELVNRIRA 85 (171)
T ss_pred ecCcccchH-HHHHHHHHhhhccCCCCEEEEEEec-CcccCCC--CH---HHHHHHHHHHHHHHHH
Confidence 346678754 4454444332122466788888886 7765432 21 1223556677777754
No 134
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=31.61 E-value=1.2e+02 Score=35.75 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=30.8
Q ss_pred CcEEEEEcCchHHHHHHHHHHhC----C---CCCCCCEEEEeCCCCcchhh
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDL----K---LPHSPPVATVPLGTGNNIPF 192 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~----~---~~~~~plgIIP~GTGNDfAR 192 (357)
-+.+|++|||||+.-..- |.+. + ....+++--||.==-||+..
T Consensus 801 Id~LVvIGGDgS~t~A~~-Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~ 850 (1328)
T PTZ00468 801 MRAIAIVGNSEAATFGAS-LSEQLICMSLNGMKSEIPVVFVPVCLENSISH 850 (1328)
T ss_pred CCEEEEeCCchHHHHHHH-HHHHHhhhccccccCCCcEEEeCccccCCCCC
Confidence 357999999999986543 2221 1 12468889999888999987
No 135
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=30.78 E-value=1.3e+02 Score=35.49 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=32.5
Q ss_pred cEEEEEcCchHHHHHHH---HHHhCCCCCCCCEEEEeCCCCcchhh-----hcCCCC
Q 018367 150 LRLIVAGGDGTASWLLG---VVSDLKLPHSPPVATVPLGTGNNIPF-----SFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln---~L~~~~~~~~~plgIIP~GTGNDfAR-----sLG~~~ 198 (357)
+.+|++|||||..-+.. .+.+. ...+++--||-===||+.. ++|.++
T Consensus 198 d~LVvIGGDgS~t~A~~LaEy~~~~--g~~I~VIGIPKTIDNDL~g~~tD~S~GFdT 252 (1328)
T PTZ00468 198 HGLVVIGGDDSNTNAAVLAEYFKRN--SSSTVVVGCPKTIDGDLKNEVIETSFGYDT 252 (1328)
T ss_pred CEEEEECCchHHHHHHHHHHHHHhc--CCCeeEEEEeEEEcCCCCCCcCCCCCCHHH
Confidence 46999999999975532 12222 2357888889877999973 666654
No 136
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=29.03 E-value=1.5e+02 Score=31.88 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=28.2
Q ss_pred cEEEEEcCchHHHHHHHH---HHhCCCCCCCCEEEEeCCCCcchhhh
Q 018367 150 LRLIVAGGDGTASWLLGV---VSDLKLPHSPPVATVPLGTGNNIPFS 193 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~---L~~~~~~~~~plgIIP~GTGNDfARs 193 (357)
+.+|++|||||...+..- +.+. ...+++--||-===||+.-+
T Consensus 192 d~LViIGGddS~~~A~~Lae~~~~~--g~~i~VIGVPKTIDNDL~~t 236 (568)
T PLN02251 192 DGLVVIGGDDSNTNACLLAEYFRAK--NLKTRVIGCPKTIDGDLKSK 236 (568)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhc--CCCeeEEEeCceEeCCCCCC
Confidence 469999999998766431 2211 23466777787668888754
No 137
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=27.48 E-value=2e+02 Score=32.12 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=28.6
Q ss_pred cEEEEEcCchHHHHHH----------HHHHhCC--------CCCCCCEEEEeCCCCcchh
Q 018367 150 LRLIVAGGDGTASWLL----------GVVSDLK--------LPHSPPVATVPLGTGNNIP 191 (357)
Q Consensus 150 ~~VVv~GGDGTVneVl----------n~L~~~~--------~~~~~plgIIP~GTGNDfA 191 (357)
+.+|++|||||+.-+. ..|.+.. ....+++--||-===||++
T Consensus 99 d~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 99 TNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred CEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 5799999999997654 1222211 1235678888977799997
No 138
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=27.18 E-value=71 Score=30.56 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=17.6
Q ss_pred ccCCCCCcEEEEEcCCCCCCCh
Q 018367 76 SSLIPSCPVLVFINSKSGGQLG 97 (357)
Q Consensus 76 ~~~~~~~~vlvIvNP~SG~~~g 97 (357)
....|..++.+|+||.+|-|.+
T Consensus 25 ~~~~p~~~f~vIiNP~sGPG~~ 46 (253)
T PF12138_consen 25 IAAHPSVPFTVIINPNSGPGSA 46 (253)
T ss_pred HhcCCCCcEEEEEcCCCCCCCC
Confidence 3455778899999999998754
No 139
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=26.94 E-value=2.3e+02 Score=31.70 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=30.7
Q ss_pred CcEEEEEcCchHHHHHHHHHHhC--C-CCCCCCEEEEeCCCCcchh
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDL--K-LPHSPPVATVPLGTGNNIP 191 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~--~-~~~~~plgIIP~GTGNDfA 191 (357)
-+.+|++|||||..-+.. |.+. + ....+|+-.||.=--||+.
T Consensus 479 Id~LivIGGdgs~~~a~~-L~~~~~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 479 IDGLIIVGGFEAYKGLLQ-LREAREQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred CCEEEEECChhHHHHHHH-HHHHHhhCCCCCccEEEecccccCCCC
Confidence 356999999999986653 3321 0 1246899999999999986
No 140
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=26.37 E-value=96 Score=30.32 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=13.8
Q ss_pred CcEEEEEcCchHH-----HHHHHHH
Q 018367 149 RLRLIVAGGDGTA-----SWLLGVV 168 (357)
Q Consensus 149 ~~~VVv~GGDGTV-----neVln~L 168 (357)
...||++.|||+. ++++.++
T Consensus 71 d~~VVai~GDG~f~~mg~~eL~tA~ 95 (287)
T TIGR02177 71 HLKVIVVGGDGDLYGIGGNHFVAAG 95 (287)
T ss_pred CCcEEEEeCchHHHhccHHHHHHHH
Confidence 3469999999984 4555544
No 141
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=26.11 E-value=1.1e+02 Score=29.13 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=25.4
Q ss_pred CcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCC
Q 018367 149 RLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTG 187 (357)
Q Consensus 149 ~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTG 187 (357)
...||++|=||++-.|+.+|.+ .|+--+|--+|
T Consensus 174 ~~lIVvAGMEGaLPsvvagLvD------~PVIavPTsVG 206 (254)
T COG1691 174 DVLIVVAGMEGALPSVVAGLVD------VPVIAVPTSVG 206 (254)
T ss_pred CeEEEEcccccchHHHHHhccC------CCeEecccccc
Confidence 3469999999999999999985 45555665444
No 142
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=25.99 E-value=71 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=22.2
Q ss_pred cEEEEEcCchHHHHHHHHHHh--CCCCCCCCEEEEe
Q 018367 150 LRLIVAGGDGTASWLLGVVSD--LKLPHSPPVATVP 183 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~--~~~~~~~plgIIP 183 (357)
..|+.-||=||+-|+...+.- +....+.|+.++=
T Consensus 56 a~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 56 AFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp EEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred EEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 457888999999999988753 3223343766653
No 143
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=25.50 E-value=2.9e+02 Score=28.10 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=40.5
Q ss_pred ccCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhccCc--EEEeeccChhh---HHHHHHHHHHHhhhccchhhhhhccCc
Q 018367 76 SSLIPSCPVLVFINSKSGGQLGGKLLLTYRSLLNENQ--VIDLGEKAPDK---VLHQLYVTLEKFKAAGDVFASEIEKRL 150 (357)
Q Consensus 76 ~~~~~~~~vlvIvNP~SG~~~g~~~~~~~~~~L~~~~--V~~l~~~~p~~---~~~~~~~~l~~l~~~~~~lA~~~~~~~ 150 (357)
......++++++.|+.=. .-+..++...|.... +..++- .+++ .++.+.+..+.+.+. ......
T Consensus 28 ~~~~~~~k~~ivtd~~v~----~~y~~~~~~~l~~~g~~v~~~~l-p~GE~~Ksl~~~~~i~~~ll~~------~~~R~s 96 (360)
T COG0337 28 AELLAGRKVAIVTDETVA----PLYLEKLLATLEAAGVEVDSIVL-PDGEEYKSLETLEKIYDALLEA------GLDRKS 96 (360)
T ss_pred hhhccCCeEEEEECchhH----HHHHHHHHHHHHhcCCeeeEEEe-CCCcccccHHHHHHHHHHHHHc------CCCCCc
Confidence 344455689999886543 224566666665432 311211 1121 122122222222111 122445
Q ss_pred EEEEEcCchHHHHHHHHHH
Q 018367 151 RLIVAGGDGTASWLLGVVS 169 (357)
Q Consensus 151 ~VVv~GGDGTVneVln~L~ 169 (357)
.||+.|| |+|..+..-+.
T Consensus 97 ~iialGG-GvigDlaGF~A 114 (360)
T COG0337 97 TLIALGG-GVIGDLAGFAA 114 (360)
T ss_pred EEEEECC-hHHHHHHHHHH
Confidence 6888887 99998876553
No 144
>PRK00536 speE spermidine synthase; Provisional
Probab=24.89 E-value=53 Score=31.66 Aligned_cols=16 Identities=44% Similarity=0.331 Sum_probs=11.6
Q ss_pred cEEEEEcCc-hHHHHHH
Q 018367 150 LRLIVAGGD-GTASWLL 165 (357)
Q Consensus 150 ~~VVv~GGD-GTVneVl 165 (357)
-.+|+-||| ||+.||+
T Consensus 75 ~VLIiGGGDGg~~REvL 91 (262)
T PRK00536 75 EVLIVDGFDLELAHQLF 91 (262)
T ss_pred eEEEEcCCchHHHHHHH
Confidence 346777889 6778876
No 145
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=24.85 E-value=2.7e+02 Score=28.09 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=27.2
Q ss_pred cEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchh
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIP 191 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfA 191 (357)
+.+|++|||||..-..- |.+. ...++-=||-===||++
T Consensus 96 d~LvvIGGDgS~~gA~~-Lae~---~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 96 DALVVIGGDGSYTGAAL-LAEE---GGIPVVGVPKTIDNDIS 133 (347)
T ss_pred CEEEEECCCChHHHHHH-HHHh---cCCcEEecCCCccCCCc
Confidence 56999999999886643 3332 23677777877789988
No 146
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.10 E-value=58 Score=31.69 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=14.1
Q ss_pred cCcEEEEEcCchH-HHHHHHHH
Q 018367 148 KRLRLIVAGGDGT-ASWLLGVV 168 (357)
Q Consensus 148 ~~~~VVv~GGDGT-VneVln~L 168 (357)
+...||+++|||+ .+.-++.|
T Consensus 76 Pd~~VV~i~GDG~~f~ig~~eL 97 (279)
T PRK11866 76 PKLTVIGYGGDGDGYGIGLGHL 97 (279)
T ss_pred CCCcEEEEECChHHHHccHHHH
Confidence 3456999999994 65444444
No 147
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=22.71 E-value=1.1e+02 Score=29.98 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=14.8
Q ss_pred cCcEEEEEcCchHH-----HHHHHHH
Q 018367 148 KRLRLIVAGGDGTA-----SWLLGVV 168 (357)
Q Consensus 148 ~~~~VVv~GGDGTV-----neVln~L 168 (357)
+...||+++|||.. ++++.+.
T Consensus 87 pd~~VV~i~GDG~~~~mg~~eL~tA~ 112 (301)
T PRK05778 87 PDLEVIVVGGDGDLASIGGGHFIHAG 112 (301)
T ss_pred CCCcEEEEeCccHHHhccHHHHHHHH
Confidence 34569999999975 4555554
No 148
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=22.65 E-value=1e+02 Score=26.28 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=32.3
Q ss_pred EEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcC
Q 018367 153 IVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNA 218 (357)
Q Consensus 153 Vv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~ 218 (357)
..++|+.|-+ ++..+.+.-...++.+-+|=+| +||+.+. ++. ..-.+++.++++.+...
T Consensus 42 ~g~~G~~~~~-~~~~l~~~~~~~~pd~v~i~~G-~ND~~~~--~~~---~~~~~~l~~li~~~~~~ 100 (177)
T cd01822 42 AGVSGDTTAG-GLARLPALLAQHKPDLVILELG-GNDGLRG--IPP---DQTRANLRQMIETAQAR 100 (177)
T ss_pred cCcCCcccHH-HHHHHHHHHHhcCCCEEEEecc-CcccccC--CCH---HHHHHHHHHHHHHHHHC
Confidence 3667886654 3333322101236779999999 7886542 211 12234566777777643
No 149
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=22.47 E-value=54 Score=35.49 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=33.0
Q ss_pred EEEEcCchHHHHHHHHHHhCC-------CCCCCCEEE-EeCCCCc-chhhhcCC
Q 018367 152 LIVAGGDGTASWLLGVVSDLK-------LPHSPPVAT-VPLGTGN-NIPFSFGW 196 (357)
Q Consensus 152 VVv~GGDGTVneVln~L~~~~-------~~~~~plgI-IP~GTGN-DfARsLG~ 196 (357)
|-.==|||-+|..+|-|.-.+ ...+.|+|| +|+|||- -||-..|.
T Consensus 461 VslrpgdGVIHswLNrmllpDtvgtGGDSHTRfpiGisFpAgSGlVAfAaatGv 514 (852)
T COG1049 461 VSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGV 514 (852)
T ss_pred eecCCCCccHHHHHHhccCCcceecCCcccccccccceecCCCchhhhhHhcCc
Confidence 444569999999999875321 357889997 8999985 46776663
No 150
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=22.44 E-value=6.6e+02 Score=23.64 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=27.0
Q ss_pred cCcEEEEEcCc----hHHHHHHHHHHhCCCCCCCCEEEEeCC-CCcchhhhcCCCC
Q 018367 148 KRLRLIVAGGD----GTASWLLGVVSDLKLPHSPPVATVPLG-TGNNIPFSFGWGK 198 (357)
Q Consensus 148 ~~~~VVv~GGD----GTVneVln~L~~~~~~~~~plgIIP~G-TGNDfARsLG~~~ 198 (357)
+...+++..|| ||..+++..+.+. ....++=|||.= +..-.|-.+|+|-
T Consensus 92 g~~v~~l~~GDp~~ys~~~~l~~~l~~~--~~~~~veivPGIss~~a~aa~~g~pL 145 (238)
T PRK05948 92 GEDVAFACEGDVSFYSTFTYLAQTLQEL--YPQVAIQTIPGVCSPLAAAAALGIPL 145 (238)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHhc--CCCCCEEEECChhHHHHHHHHhCCCe
Confidence 34578899999 4555555555432 124566777742 3344444455443
No 151
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=22.38 E-value=95 Score=28.04 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=23.2
Q ss_pred cEEEEEcCchHHHHHHHHHHh--CCCCCCCCEEEE
Q 018367 150 LRLIVAGGDGTASWLLGVVSD--LKLPHSPPVATV 182 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~--~~~~~~~plgII 182 (357)
..|+.-||=||+.|++..+.- +.. +..|+.++
T Consensus 99 a~I~lPGG~GTL~El~e~~~~~qlg~-~~kPiil~ 132 (178)
T TIGR00730 99 AFIAMPGGFGTLEELFEVLTWAQLGI-HQKPIILF 132 (178)
T ss_pred EEEEcCCCcchHHHHHHHHHHHHcCC-CCCCEEEE
Confidence 457788999999999998752 222 34567776
No 152
>PTZ00287 6-phosphofructokinase; Provisional
Probab=22.27 E-value=2.1e+02 Score=34.09 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=31.3
Q ss_pred cEEEEEcCchHHHHHHHHHHhCCCCCCCC--EEEEeCCCCcchh-----hhcCCCC
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPP--VATVPLGTGNNIP-----FSFGWGK 198 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~~~~~~p--lgIIP~GTGNDfA-----RsLG~~~ 198 (357)
+.+|++|||||..-+.. |.+.-.....| +--||.==-||+. .++|.++
T Consensus 273 d~LViIGGddS~~~A~~-Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDT 327 (1419)
T PTZ00287 273 NGLVIIGGDGSNSNAAL-ISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDT 327 (1419)
T ss_pred CEEEEECChhHHHHHHH-HHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHH
Confidence 56999999999977653 22210012344 5778988899998 5566554
No 153
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=22.26 E-value=1.3e+02 Score=28.18 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=12.8
Q ss_pred cEEEEEcCchHH-HHHHHHH
Q 018367 150 LRLIVAGGDGTA-SWLLGVV 168 (357)
Q Consensus 150 ~~VVv~GGDGTV-neVln~L 168 (357)
..||++.|||++ +--+++|
T Consensus 81 r~VV~i~GDG~~~~m~~~eL 100 (235)
T cd03376 81 ITVVAFAGDGGTADIGFQAL 100 (235)
T ss_pred CeEEEEEcCchHHhhHHHHH
Confidence 469999999994 3333333
No 154
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.19 E-value=94 Score=27.00 Aligned_cols=57 Identities=5% Similarity=0.020 Sum_probs=35.5
Q ss_pred cEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCCCCcchhhhcCCCCCCCCCchHHHHHHHHHHHcC
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLGTGNNIPFSFGWGKKNPNTDQQAVLSFLEQVKNA 218 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~GTGNDfARsLG~~~~~~~~~~~~~~~~l~~I~~~ 218 (357)
..=..+|||+++...+..+.. ..+|-+-+|=+|| ||+.... .-.+++..+++.|.+.
T Consensus 34 v~N~g~~G~~~~~~~~~~~~~---~~~pd~vii~~G~-ND~~~~~--------~~~~~~~~~i~~i~~~ 90 (177)
T cd01844 34 VINLGFSGNARLEPEVAELLR---DVPADLYIIDCGP-NIVGAEA--------MVRERLGPLVKGLRET 90 (177)
T ss_pred eEEeeecccccchHHHHHHHH---hcCCCEEEEEecc-CCCccHH--------HHHHHHHHHHHHHHHH
Confidence 345688999887654433322 2356788887876 6754321 2345788888888754
No 155
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=22.03 E-value=97 Score=27.63 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=23.9
Q ss_pred cCcEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEeCC
Q 018367 148 KRLRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVPLG 185 (357)
Q Consensus 148 ~~~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP~G 185 (357)
-+..+|+-++.||++.++..+.......-..+|+|=-.
T Consensus 130 a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 130 APVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp -EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 34568889999999999877654321222356676433
No 156
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=21.42 E-value=1.3e+02 Score=26.64 Aligned_cols=29 Identities=34% Similarity=0.459 Sum_probs=23.4
Q ss_pred cEEEEEcCchHHHHHHHHHHhCCCCCCCCEEEEe
Q 018367 150 LRLIVAGGDGTASWLLGVVSDLKLPHSPPVATVP 183 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~~~~~~~~~plgIIP 183 (357)
..|++-||=||+.|+...+.. ..|+.+++
T Consensus 94 a~IvlpGG~GTL~E~~~a~~~-----~kpv~~l~ 122 (159)
T TIGR00725 94 VVVSVGGGYGTAIEILGAYAL-----GGPVVVLR 122 (159)
T ss_pred EEEEcCCchhHHHHHHHHHHc-----CCCEEEEE
Confidence 457788999999999998763 56788877
No 157
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=21.07 E-value=1.8e+02 Score=25.83 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=14.6
Q ss_pred cEEEEEcCchHHHHHHHHHH
Q 018367 150 LRLIVAGGDGTASWLLGVVS 169 (357)
Q Consensus 150 ~~VVv~GGDGTVneVln~L~ 169 (357)
..||++-|||+...-++.+.
T Consensus 60 ~~vv~i~GDG~f~m~~~el~ 79 (179)
T cd03372 60 RKVIVIDGDGSLLMNLGALA 79 (179)
T ss_pred CcEEEEECCcHHHhCHHHHH
Confidence 56999999999865555543
Done!