Query 018368
Match_columns 357
No_of_seqs 120 out of 131
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 08:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06217 GAGA_bind: GAGA bindi 100.0 1E-119 3E-124 860.3 11.5 300 23-357 1-301 (301)
2 PF06217 GAGA_bind: GAGA bindi 99.9 1E-22 2.2E-27 195.9 4.0 208 38-268 19-246 (301)
3 COG4372 Uncharacterized protei 96.7 0.008 1.7E-07 61.7 9.2 56 57-112 201-256 (499)
4 COG4372 Uncharacterized protei 95.2 0.11 2.5E-06 53.5 9.3 57 55-111 206-262 (499)
5 PF04094 DUF390: Protein of un 95.1 0.076 1.7E-06 57.9 8.3 43 64-106 535-577 (828)
6 PF04094 DUF390: Protein of un 94.4 0.15 3.3E-06 55.7 8.5 34 78-111 542-575 (828)
7 TIGR03319 YmdA_YtgF conserved 85.5 5.3 0.00012 42.0 9.6 23 308-330 422-444 (514)
8 PRK12704 phosphodiesterase; Pr 85.2 5.7 0.00012 41.8 9.6 21 310-330 430-450 (520)
9 PRK12704 phosphodiesterase; Pr 85.1 5.9 0.00013 41.7 9.7 38 68-105 84-121 (520)
10 TIGR03319 YmdA_YtgF conserved 83.0 8.2 0.00018 40.6 9.7 34 68-101 78-111 (514)
11 PRK00106 hypothetical protein; 77.7 16 0.00034 39.1 9.7 23 308-330 443-465 (535)
12 PRK00106 hypothetical protein; 75.2 20 0.00043 38.4 9.6 23 267-289 333-355 (535)
13 cd00374 RNase_T2 Ribonuclease 59.9 9.7 0.00021 33.6 3.2 30 321-350 60-92 (195)
14 PF10186 Atg14: UV radiation r 58.8 1.1E+02 0.0023 28.3 9.9 33 58-90 76-108 (302)
15 PF13300 DUF4078: Domain of un 56.0 54 0.0012 27.5 6.7 15 82-96 70-84 (88)
16 PRK12705 hypothetical protein; 55.6 76 0.0016 33.9 9.4 25 308-332 416-440 (508)
17 PRK12705 hypothetical protein; 55.1 81 0.0018 33.7 9.5 14 2-15 15-28 (508)
18 PF06212 GRIM-19: GRIM-19 prot 51.7 73 0.0016 28.3 7.3 22 90-111 76-97 (130)
19 PF10186 Atg14: UV radiation r 50.2 1.7E+02 0.0036 27.0 9.8 22 315-336 251-280 (302)
20 PF13300 DUF4078: Domain of un 45.8 66 0.0014 27.0 5.7 42 64-105 45-86 (88)
21 KOG1642 Ribonuclease, T2 famil 41.4 23 0.00051 35.0 2.9 65 264-350 41-128 (263)
22 PRK10947 global DNA-binding tr 41.4 1.4E+02 0.003 26.7 7.4 42 64-105 19-60 (135)
23 COG3551 Uncharacterized protei 40.9 81 0.0017 32.7 6.6 47 62-111 335-382 (402)
24 PRK00247 putative inner membra 31.1 2.8E+02 0.0061 29.2 8.9 44 70-113 339-383 (429)
25 PRK10328 DNA binding protein, 30.8 2.6E+02 0.0056 25.0 7.4 42 64-105 19-60 (134)
26 PF14362 DUF4407: Domain of un 30.1 1.7E+02 0.0036 28.1 6.6 16 98-113 239-254 (301)
27 KOG4819 Uncharacterized conser 29.9 2.6E+02 0.0057 24.5 7.0 30 76-105 51-80 (106)
28 PF00445 Ribonuclease_T2: Ribo 28.4 34 0.00073 30.3 1.6 28 323-350 65-95 (189)
29 KOG4819 Uncharacterized conser 27.6 3.5E+02 0.0075 23.8 7.4 32 68-99 50-81 (106)
30 PF07795 DUF1635: Protein of u 27.3 2.1E+02 0.0047 27.7 6.7 51 57-110 10-60 (214)
31 cd06434 GT2_HAS Hyaluronan syn 27.0 19 0.00042 31.1 -0.2 16 273-288 220-235 (235)
32 PF14359 DUF4406: Domain of un 25.2 44 0.00096 27.6 1.6 23 319-341 16-38 (92)
33 PF08606 Prp19: Prp19/Pso4-lik 24.9 3.9E+02 0.0084 21.9 7.9 22 81-102 41-62 (70)
34 PF01086 Clathrin_lg_ch: Clath 24.4 1.6E+02 0.0034 27.9 5.3 48 56-105 113-160 (225)
35 PF13863 DUF4200: Domain of un 24.1 4.1E+02 0.0089 21.9 7.7 29 66-94 14-42 (126)
36 PRK10947 global DNA-binding tr 24.0 3E+02 0.0065 24.6 6.6 44 70-113 18-61 (135)
37 PF14799 FAM195: FAM195 family 22.7 35 0.00075 28.9 0.5 12 337-348 81-92 (99)
38 TIGR03495 phage_LysB phage lys 22.4 5.8E+02 0.013 23.0 9.3 30 84-113 58-87 (135)
39 PRK10175 lipoprotein; Provisio 21.8 92 0.002 25.8 2.7 30 14-45 11-40 (75)
40 KOG4552 Vitamin-D-receptor int 20.8 6.5E+02 0.014 25.0 8.6 48 68-115 62-109 (272)
41 KOG3088 Secretory carrier memb 20.8 2.1E+02 0.0044 29.3 5.4 14 116-129 98-111 (313)
42 PRK14474 F0F1 ATP synthase sub 20.6 7.6E+02 0.016 23.7 9.8 13 106-118 114-126 (250)
43 PF06005 DUF904: Protein of un 20.2 4.7E+02 0.01 21.0 8.7 49 57-105 19-67 (72)
No 1
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=100.00 E-value=1.4e-119 Score=860.26 Aligned_cols=300 Identities=60% Similarity=0.942 Sum_probs=253.6
Q ss_pred ccCCCcccCCccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 23 MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNA 102 (357)
Q Consensus 23 mdd~g~~engr~k~d~yk~~~~~w~m~~~~~~~~~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~A 102 (357)
|||+|++| ||+. ||+-. .++..| ..++||++|.|||+||.||+.|++|+++|+++||+|++|||+||+|||+|
T Consensus 1 MDddg~~~--R~wg-~ye~~--~s~K~h--LGLqlMs~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~a 73 (301)
T PF06217_consen 1 MDDDGSLE--RNWG-YYEPQ--NSMKGH--LGLQLMSIMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNA 73 (301)
T ss_pred CCCccccc--cCcc-ccccc--cccccc--ccceeeccccccCcccccccchhccccccccchhhhhhhhhhhhccchhh
Confidence 99999999 9999 99932 444443 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCCCCCccccCccCCCCCcccccccccchhhhh-hccccCCCCCCCCCCCcCcCCcc
Q 018368 103 ILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKPR 181 (357)
Q Consensus 103 I~eRD~aiaaLq~reNsmng~~~~cpp~~g~krg~K~~hH~~~h~~~~~hisea~~-~~~~~~~~asPis~~~~e~~k~K 181 (357)
|+|||++|++|+|++++++ ..||++||+.++.+++||++++ +++++.+..| ++|+++.++.||+.++++.++++
T Consensus 74 i~ERd~a~a~l~~~~~~~n---~~~p~~~~~~~~tk~~~~~q~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 148 (301)
T PF06217_consen 74 IMERDNAIAALQPRNNNGN---HHCPPGCGILPGTKHIHHMQQH--HHPQLQPPPYSTREMHNIDAPPISTAPPESKKSK 148 (301)
T ss_pred cccchhhhhhccccCCCcc---ccCCCCCcccCCCccCCCcccc--cccccCCCCCCccccccccccccccCCcccccCC
Confidence 9999999999999999877 5689999999999999987663 2367788888 79999999999988766666665
Q ss_pred cccccCCCCCCCCCCcCCCCcccccccccccccccccCCCcccccccCCCCCCcccccccccccccCCcccccceeeecC
Q 018368 182 RYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDE 261 (357)
Q Consensus 182 R~Kr~KesK~~~~~kK~kK~~ek~kk~geDlNr~l~~~k~EWk~~QDl~~G~n~v~~~~~r~~~~~~~~~~~~n~~~~d~ 261 (357)
+.|+.+..+..+.++ . ++.++.++++++. ++ .. +. + ++.+.+||++||+||+|+||+
T Consensus 149 ~~k~~~~~~~~k~~k-~----~k~kk~~~~~~~~----------~~-~~-~~-----~-~~~k~~~k~~dl~in~i~~D~ 205 (301)
T PF06217_consen 149 PPKKRKRPKSPKSPK-P----KKPKKKPSVPNRN----------VN-PP-GS-----D-QRSKPEKKNQDLVINGINFDE 205 (301)
T ss_pred CCCCCCCCCCCCCCC-C----CCCCCCCCCchhh----------cc-cc-cc-----c-cccccccccccccccceeecc
Confidence 555444333222111 1 1233333333221 00 00 11 0 456899999999999999999
Q ss_pred CCCCCCcccccCCCccceeccCCcccccccccccccccCCCCCCCCCccccccccchhHHHHHHHHHhhcccCCCCCccc
Q 018368 262 STMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDL 341 (357)
Q Consensus 262 s~~p~p~csctg~~~~cy~wg~ggwqs~cctt~~s~yplp~~~~~r~~r~~grkms~~af~kll~~l~~eg~~~s~p~dl 341 (357)
|+||+|||||||+|||||||||||||||||||+||||||||+||||||||||||||+|||+|||+|||+||||||+||||
T Consensus 206 s~mP~PvCSCTG~pqqCYrWG~GGWQSaCCTT~iSmYPLPm~~nkRgaRi~GRKMS~gAF~KlL~rLAaEGydls~PiDL 285 (301)
T PF06217_consen 206 STMPIPVCSCTGVPQQCYRWGNGGWQSACCTTTISMYPLPMSPNKRGARIGGRKMSGGAFKKLLERLAAEGYDLSNPIDL 285 (301)
T ss_pred CCCCCcccccCCCCccccccCCCccccccccccccccccCCCCCCCccccccccccHHHHHHHHHHHHhcccccCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCcceeecC
Q 018368 342 KDHWAKHGTNRYITIK 357 (357)
Q Consensus 342 k~~wa~hgtn~~~ti~ 357 (357)
|+||||||||||||||
T Consensus 286 K~hWAKHGTNryvTIk 301 (301)
T PF06217_consen 286 KDHWAKHGTNRYVTIK 301 (301)
T ss_pred HHHHHhcCCcceEecC
Confidence 9999999999999998
No 2
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=99.86 E-value=1e-22 Score=195.87 Aligned_cols=208 Identities=25% Similarity=0.259 Sum_probs=148.3
Q ss_pred cccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Q 018368 38 QYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE---RDNAIASLQ 114 (357)
Q Consensus 38 ~yk~~~~~w~m~~~~~~~~~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e---RD~aiaaLq 114 (357)
.+|+-.+.=+|. .|-|++++++||+.||.|++.|++|||+|++|||.||+|||.||+|||+||+. +++.++
T Consensus 19 s~K~hLGLqlMs---~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~ai~ERd~a~a~l~~~~~~~n--- 92 (301)
T PF06217_consen 19 SMKGHLGLQLMS---IMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNAIMERDNAIAALQPRNNNGN--- 92 (301)
T ss_pred cccccccceeec---cccccCcccccccchhccccccccchhhhhhhhhhhhccchhhcccchhhhhhccccCCCcc---
Confidence 467666643444 55689999999999999999999999999999999999999999999999999 777655
Q ss_pred hhhccCCCCCCCCCCCCccccCccCCCCCc-ccccccccchhhhhhccccCCCCCCCCCCCcCcCCccc---ccccCCCC
Q 018368 115 YRENSLGGNMSSCPPGCQISRGVKHMHHPQ-QHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRR---YKRAKEPK 190 (357)
Q Consensus 115 ~reNsmng~~~~cpp~~g~krg~K~~hH~~-~h~~~~~hisea~~~~~~~~~~asPis~~~~e~~k~KR---~Kr~KesK 190 (357)
.+. +++|....++++.++.+++++ ++.++...+.+.....+. ++..+.++..+.+++|+ .|.+|..+
T Consensus 93 --~~~----p~~~~~~~~tk~~~~~q~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~k~~~~~~~~k~~k 163 (301)
T PF06217_consen 93 --HHC----PPGCGILPGTKHIHHMQQHHHPQLQPPPYSTREMHNIDAP---PISTAPPESKKSKPPKKRKRPKSPKSPK 163 (301)
T ss_pred --ccC----CCCCcccCCCccCCCcccccccccCCCCCCcccccccccc---ccccCCcccccCCCCCCCCCCCCCCCCC
Confidence 222 345678888998887666332 222221111121111222 44444444444455444 44455444
Q ss_pred CCCCCCcCCCCcccccccccccccccccCCCcccccccCCCCCCcccccc-------------cccccccCCccccccee
Q 018368 191 VLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQS-------------TASKSDWKGQVLGLNQV 257 (357)
Q Consensus 191 ~~~~~kK~kK~~ek~kk~geDlNr~l~~~k~EWk~~QDl~~G~n~v~~~~-------------~r~~~~~~~~~~~~n~~ 257 (357)
+.++.+++++..++++..+.+. ..+.+||+ ||| ++|+|+|++ .++...|....+.-.+.
T Consensus 164 ~~k~kk~~~~~~~~~~~~~~~~-----~~k~~~k~-~dl--~in~i~~D~s~mP~PvCSCTG~pqqCYrWG~GGWQSaCC 235 (301)
T PF06217_consen 164 PKKPKKKPSVPNRNVNPPGSDQ-----RSKPEKKN-QDL--VINGINFDESTMPIPVCSCTGVPQQCYRWGNGGWQSACC 235 (301)
T ss_pred CCCCCCCCCCchhhcccccccc-----cccccccc-ccc--cccceeeccCCCCCcccccCCCCccccccCCCccccccc
Confidence 4444444455556677666552 37899999 888 799999998 67888999999999999
Q ss_pred eecCCCCCCCc
Q 018368 258 TFDESTMPPPA 268 (357)
Q Consensus 258 ~~d~s~~p~p~ 268 (357)
+-.+|..|.|+
T Consensus 236 TT~iSmYPLPm 246 (301)
T PF06217_consen 236 TTTISMYPLPM 246 (301)
T ss_pred cccccccccCC
Confidence 99999999997
No 3
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.71 E-value=0.008 Score=61.69 Aligned_cols=56 Identities=27% Similarity=0.307 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 57 IMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIAS 112 (357)
Q Consensus 57 ~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaa 112 (357)
-..-++-|..|++.|++.++.|.+|.+++|.+|.+||+-|..+|.+|++||+.|..
T Consensus 201 ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~ 256 (499)
T COG4372 201 EAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRE 256 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556667778899999999999999999999999999888888888888887763
No 4
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.17 E-value=0.11 Score=53.54 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 55 KQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIA 111 (357)
Q Consensus 55 ~~~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aia 111 (357)
-....++.-|+..+.-|..|...++.+|.+||.-|.++|.+|+.|++.|.+|+.-+.
T Consensus 206 a~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq 262 (499)
T COG4372 206 ATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQ 262 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345577778888888888888888888888888888888888888888877765544
No 5
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=95.11 E-value=0.076 Score=57.93 Aligned_cols=43 Identities=33% Similarity=0.436 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 64 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILER 106 (357)
Q Consensus 64 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eR 106 (357)
|+.++.+|+.-|+..+++.++++.++..|+.|++|||.++.++
T Consensus 535 Re~a~a~Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~~a 577 (828)
T PF04094_consen 535 RERAAAQREATLAAHEAAAAEEESALRLREEALAERDRALNRA 577 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444445555555555544443
No 6
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=94.45 E-value=0.15 Score=55.73 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 78 KKAAIAERDMAFLQRDTAIAERNNAILERDNAIA 111 (357)
Q Consensus 78 Rd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aia 111 (357)
|+.-++-.+.+.++++.+|..|+.|++|||.+++
T Consensus 542 Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~ 575 (828)
T PF04094_consen 542 REATLAAHEAAAAEEESALRLREEALAERDRALN 575 (828)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334445555566666666666666654
No 7
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.53 E-value=5.3 Score=41.95 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=16.4
Q ss_pred CccccccccchhHHHHHHHHHhh
Q 018368 308 HARVGGRKMSGSAFNKLLTRLAA 330 (357)
Q Consensus 308 ~~r~~grkms~~af~kll~~l~~ 330 (357)
.+|-|-|.+|...|-+.|..|..
T Consensus 422 a~rpgar~e~~~~~~~rl~~le~ 444 (514)
T TIGR03319 422 AARPGARRESLENYIKRLEKLEE 444 (514)
T ss_pred CCCCCCcccCHHHHHHHHHHHHH
Confidence 34667777888888887777754
No 8
>PRK12704 phosphodiesterase; Provisional
Probab=85.23 E-value=5.7 Score=41.81 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=14.8
Q ss_pred cccccccchhHHHHHHHHHhh
Q 018368 310 RVGGRKMSGSAFNKLLTRLAA 330 (357)
Q Consensus 310 r~~grkms~~af~kll~~l~~ 330 (357)
|.|-|..|-..|-+.|.+|-.
T Consensus 430 Rpgar~~~~e~~i~rl~~le~ 450 (520)
T PRK12704 430 RPGARRETLENYIKRLEKLEE 450 (520)
T ss_pred CCCCccccHHHHHHHHHHHHH
Confidence 456666788888888777743
No 9
>PRK12704 phosphodiesterase; Provisional
Probab=85.15 E-value=5.9 Score=41.70 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=14.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 68 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 105 (357)
Q Consensus 68 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 105 (357)
|.+|+..|.+|+..|.+|...|.+|+..|.+|...|.+
T Consensus 84 L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~ 121 (520)
T PRK12704 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ 121 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334333333333333333333333333333
No 10
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=82.95 E-value=8.2 Score=40.59 Aligned_cols=34 Identities=6% Similarity=0.202 Sum_probs=12.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 68 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNN 101 (357)
Q Consensus 68 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~ 101 (357)
|.+|+..|.+|+..|.+|+..+.+|+..|.+|..
T Consensus 78 L~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~ 111 (514)
T TIGR03319 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEK 111 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 11
>PRK00106 hypothetical protein; Provisional
Probab=77.73 E-value=16 Score=39.13 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.0
Q ss_pred CccccccccchhHHHHHHHHHhh
Q 018368 308 HARVGGRKMSGSAFNKLLTRLAA 330 (357)
Q Consensus 308 ~~r~~grkms~~af~kll~~l~~ 330 (357)
.+|.|-|.+|...|-+.|+.|-.
T Consensus 443 a~Rpgar~~s~~~~i~rl~~lE~ 465 (535)
T PRK00106 443 SARPGARNESMENYIKRLRDLEE 465 (535)
T ss_pred cCCCCCCcCCHHHHHHHHHHHHH
Confidence 35678889999999999998854
No 12
>PRK00106 hypothetical protein; Provisional
Probab=75.16 E-value=20 Score=38.38 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=12.0
Q ss_pred CcccccCCCccceeccCCccccc
Q 018368 267 PACSCTGVLRQCYKWGNGGWQSA 289 (357)
Q Consensus 267 p~csctg~~~~cy~wg~ggwqs~ 289 (357)
-...+-|-.+.=+..|..-|+.|
T Consensus 333 e~~~~lg~l~~r~sy~qnl~~HS 355 (535)
T PRK00106 333 DLIKIMGRLQFRTSYGQNVLRHS 355 (535)
T ss_pred HHHHHHHHHhhhccCCCcHHHHH
Confidence 34445555544444555566655
No 13
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen.
Probab=59.90 E-value=9.7 Score=33.59 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcccCCCCC--ccch-hhhhhcCC
Q 018368 321 FNKLLTRLAAEGHDLSHP--VDLK-DHWAKHGT 350 (357)
Q Consensus 321 f~kll~~l~~eg~~~s~p--~dlk-~~wa~hgt 350 (357)
...|+..|...=-||..+ -+|- .-|.||||
T Consensus 60 ~~~l~~~l~~~w~~~~~~~~~~fw~hEW~KHGT 92 (195)
T cd00374 60 DSDLLDELNKYWPDLMPGKDSSFWKHEWNKHGT 92 (195)
T ss_pred cHHHHHHHHhhCcccCCCCCchHHHHHHhcCce
Confidence 346777788777788776 5555 44899998
No 14
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=58.76 E-value=1.1e+02 Score=28.32 Aligned_cols=33 Identities=6% Similarity=0.123 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018368 58 MTIMAERDAALQERNLATSEKKAAIAERDMAFL 90 (357)
Q Consensus 58 ~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~Aia 90 (357)
...+.+....|.++.+.+.+++.++.+|...+.
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555544444
No 15
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=55.96 E-value=54 Score=27.45 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 018368 82 IAERDMAFLQRDTAI 96 (357)
Q Consensus 82 i~qRD~AiaqRD~AI 96 (357)
...|+.+|.+|-++|
T Consensus 70 k~~R~~~~~~R~~~i 84 (88)
T PF13300_consen 70 KEKREKELEERLKKI 84 (88)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 16
>PRK12705 hypothetical protein; Provisional
Probab=55.64 E-value=76 Score=33.90 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=19.6
Q ss_pred CccccccccchhHHHHHHHHHhhcc
Q 018368 308 HARVGGRKMSGSAFNKLLTRLAAEG 332 (357)
Q Consensus 308 ~~r~~grkms~~af~kll~~l~~eg 332 (357)
.+|.|.|.+|...|.+.|+.|-.-|
T Consensus 416 aaRpGar~~s~e~yv~rL~~le~i~ 440 (508)
T PRK12705 416 AARPGARRESLDEYVQRLEELEQIA 440 (508)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHh
Confidence 3577888899999999998875444
No 17
>PRK12705 hypothetical protein; Provisional
Probab=55.05 E-value=81 Score=33.68 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=10.4
Q ss_pred cchhHHHHHHHHhc
Q 018368 2 SIFFCWVAYLLLAN 15 (357)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (357)
+|||||++|+|...
T Consensus 15 ~~~~~~~~~~~~~~ 28 (508)
T PRK12705 15 GLLLGVLVVLLKKR 28 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 56788988887654
No 18
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=51.69 E-value=73 Score=28.32 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018368 90 LQRDTAIAERNNAILERDNAIA 111 (357)
Q Consensus 90 aqRD~AI~ERD~AI~eRD~aia 111 (357)
||+|+....|-.+-.++|+-|.
T Consensus 76 AE~DR~~lr~~~~~~~~E~~lM 97 (130)
T PF06212_consen 76 AEEDRRYLRRLKANREEEAELM 97 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444
No 19
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=50.16 E-value=1.7e+02 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=11.4
Q ss_pred ccchhHHHHHHHHHh--------hcccCCC
Q 018368 315 KMSGSAFNKLLTRLA--------AEGHDLS 336 (357)
Q Consensus 315 kms~~af~kll~~l~--------~eg~~~s 336 (357)
..+-..|..-+..|. .+|.++.
T Consensus 251 ~~~~~~f~~~v~lLn~nI~~L~~~q~~~~~ 280 (302)
T PF10186_consen 251 GVDRQRFEYAVFLLNKNIAQLCFSQGIDVP 280 (302)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344556655444443 3566665
No 20
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=45.81 E-value=66 Score=26.96 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 64 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 105 (357)
Q Consensus 64 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 105 (357)
|...+.+-+.+-.+=+.+-..|+.....|+++|.+|-+.|.+
T Consensus 45 R~~qme~L~~~R~eTe~~R~~re~~k~~R~~~~~~R~~~ir~ 86 (88)
T PF13300_consen 45 RQEQMEELEELRKETEEQRKKREELKEKREKELEERLKKIRE 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333345555555555555555555544
No 21
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=41.39 E-value=23 Score=35.02 Aligned_cols=65 Identities=32% Similarity=0.641 Sum_probs=44.5
Q ss_pred CCCCcccccCCCcccee-------c---------cCCcccccccccccccccCCCCCCCCCccccccccchhHHHHHHHH
Q 018368 264 MPPPACSCTGVLRQCYK-------W---------GNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTR 327 (357)
Q Consensus 264 ~p~p~csctg~~~~cy~-------w---------g~ggwqs~cctt~~s~yplp~~~~~r~~r~~grkms~~af~kll~~ 327 (357)
-|.-+| -....-||. | -+|||++-|=-+. + .=-+-++-|+.+
T Consensus 41 WP~~~C--d~~~~~C~~~~G~~a~ftIHGLWP~~~~G~~P~~Cn~s~---------------~-----Fd~~~isdl~~~ 98 (263)
T KOG1642|consen 41 WPGAYC--DSQRTCCYPPSGKPADFTIHGLWPDYNHGSWPQNCNRSS---------------Q-----FDDSKISDLEDS 98 (263)
T ss_pred cCCccc--cCCccccCCCCCCccceEEeeeccCCCCCCCcccCCCcc---------------c-----CChHHccchhhh
Confidence 344444 666666763 3 3799998774332 1 223457789999
Q ss_pred HhhcccCCCCCcc-------chhhhhhcCC
Q 018368 328 LAAEGHDLSHPVD-------LKDHWAKHGT 350 (357)
Q Consensus 328 l~~eg~~~s~p~d-------lk~~wa~hgt 350 (357)
|..+=-||+-|-- -|--|-||||
T Consensus 99 L~~~Wp~L~~~s~n~g~~~fW~HEweKHGT 128 (263)
T KOG1642|consen 99 LEKEWPDLYCPSPNGGHESFWKHEWEKHGT 128 (263)
T ss_pred HHhhccccccCCCCCccchhhhhhhhccCc
Confidence 9999999998874 2456899999
No 22
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=41.37 E-value=1.4e+02 Score=26.73 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 64 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 105 (357)
Q Consensus 64 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 105 (357)
|+..|++-+..+..=+.+|.||.....+..+++.||..+|.+
T Consensus 19 re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~ 60 (135)
T PRK10947 19 RECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 (135)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555566666666666666666666666666
No 23
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.85 E-value=81 Score=32.66 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 62 AERDAALQERNLATSEKKAAI-AERDMAFLQRDTAIAERNNAILERDNAIA 111 (357)
Q Consensus 62 ~ERd~AI~ERd~AlaERd~Ai-~qRD~AiaqRD~AI~ERD~AI~eRD~aia 111 (357)
.||+.-..-| +-+++||+-+ +|| -|+|+|+.+.+||..-++++.++-
T Consensus 335 ~ER~~~~~sR-~L~~~Re~LVsAQ~--~lAE~D~LLRD~~~~~~~~~AiL~ 382 (402)
T COG3551 335 NERAMRELSR-RLSVCREELVSAQR--NLAETDNLLRDRDDTHARLMAILD 382 (402)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444444444 4455555433 233 566666666666666555654443
No 24
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=31.15 E-value=2.8e+02 Score=29.24 Aligned_cols=44 Identities=27% Similarity=0.240 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 018368 70 ERNLATSEKKAAIAERDMAFLQ-RDTAIAERNNAILERDNAIASL 113 (357)
Q Consensus 70 ERd~AlaERd~Ai~qRD~Aiaq-RD~AI~ERD~AI~eRD~aiaaL 113 (357)
+++++-++|++--++|-.|-.| ++.+-+||-.|+++|-...++.
T Consensus 339 ~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
T PRK00247 339 EKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAV 383 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3344555555555555544433 2235566666766655554443
No 25
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=30.80 E-value=2.6e+02 Score=25.00 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 64 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 105 (357)
Q Consensus 64 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 105 (357)
|+..|++-+.++..=...+.||.....+..+..+||..+|.+
T Consensus 19 re~~~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~ 60 (134)
T PRK10328 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINT 60 (134)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566666666655556666666666666
No 26
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=30.10 E-value=1.7e+02 Score=28.07 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 018368 98 ERNNAILERDNAIASL 113 (357)
Q Consensus 98 ERD~AI~eRD~aiaaL 113 (357)
.-+.-+++|..|+..|
T Consensus 239 ~~~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 239 SANDGFLARLEALWEL 254 (301)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 3344566688777766
No 27
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.93 E-value=2.6e+02 Score=24.49 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 76 SEKKAAIAERDMAFLQRDTAIAERNNAILE 105 (357)
Q Consensus 76 aERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 105 (357)
+||+..-++||.++.+=..--+|-..||..
T Consensus 51 ~Ere~~r~~R~e~~~aykKkr~e~~kal~K 80 (106)
T KOG4819|consen 51 AEREKVRADRDEQVKAYKKKRLEKTKALSK 80 (106)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 28
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3.1.27.1 from EC). Two histidines residues have been shown [, ] to be involved in the catalytic mechanism of RNase T2 and Rh. These residues and the region around them are highly conserved in a number of other RNAses that have been found to be evolutionary related to these fungal enzymes.; GO: 0003723 RNA binding, 0033897 ribonuclease T2 activity; PDB: 1IOO_A 3D3Z_A 1UCG_B 1UCC_A 1J1F_A 1V9H_A 1UCD_A 1J1G_A 1UCA_A 1BK7_A ....
Probab=28.38 E-value=34 Score=30.34 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=19.3
Q ss_pred HHHHHHhhcccCCCCCc--cchh-hhhhcCC
Q 018368 323 KLLTRLAAEGHDLSHPV--DLKD-HWAKHGT 350 (357)
Q Consensus 323 kll~~l~~eg~~~s~p~--dlk~-~wa~hgt 350 (357)
.|+..|...=-+|..+- +|=. -|.||||
T Consensus 65 ~~~~~L~~~Wp~~~~~~~~~fw~hEW~KHGt 95 (189)
T PF00445_consen 65 ELKSELDKYWPDLKNSNSESFWKHEWEKHGT 95 (189)
T ss_dssp GGHHHHHHHSTBSSSSHHHHHHHHHHHHTGG
T ss_pred HHhhhhhhhhhhhccchhhhhHHhcceeeeE
Confidence 56667766666776664 5544 4999998
No 29
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.61 E-value=3.5e+02 Score=23.79 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=14.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 68 LQERNLATSEKKAAIAERDMAFLQRDTAIAER 99 (357)
Q Consensus 68 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ER 99 (357)
-.||++--++||+++.+=...-.+-..||..|
T Consensus 50 ~~Ere~~r~~R~e~~~aykKkr~e~~kal~Kr 81 (106)
T KOG4819|consen 50 AAEREKVRADRDEQVKAYKKKRLEKTKALSKR 81 (106)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555544444444444444444
No 30
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=27.32 E-value=2.1e+02 Score=27.66 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 57 IMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAI 110 (357)
Q Consensus 57 ~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~ai 110 (357)
++....|=+++..+=++++..|+.-|.+= +.--..|++|||.|-..-...+
T Consensus 10 Ll~TTlELE~~k~~A~EElRk~eeqi~~L---~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 10 LLYTTLELEATKMEANEELRKREEQIAHL---KDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665555555555544433321 1112346666666555544333
No 31
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=27.04 E-value=19 Score=31.11 Aligned_cols=16 Identities=31% Similarity=0.881 Sum_probs=14.2
Q ss_pred CCCccceeccCCcccc
Q 018368 273 GVLRQCYKWGNGGWQS 288 (357)
Q Consensus 273 g~~~~cy~wg~ggwqs 288 (357)
...+|++||..|+|+|
T Consensus 220 ~~~~q~~Rw~~~~~~~ 235 (235)
T cd06434 220 KFLKQQLRWSRSNWRS 235 (235)
T ss_pred HHHHHhhhhhhcccCC
Confidence 5678999999999987
No 32
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=25.19 E-value=44 Score=27.56 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhhcccCCCCCccc
Q 018368 319 SAFNKLLTRLAAEGHDLSHPVDL 341 (357)
Q Consensus 319 ~af~kll~~l~~eg~~~s~p~dl 341 (357)
.+|.+.-.+|.++||..-||+.+
T Consensus 16 ~~f~~~a~~L~~~G~~vvnPa~~ 38 (92)
T PF14359_consen 16 PAFNAAAKRLRAKGYEVVNPAEL 38 (92)
T ss_pred HHHHHHHHHHHHCCCEEeCchhh
Confidence 68999999999999999999998
No 33
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=24.93 E-value=3.9e+02 Score=21.91 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018368 81 AIAERDMAFLQRDTAIAERNNA 102 (357)
Q Consensus 81 Ai~qRD~AiaqRD~AI~ERD~A 102 (357)
|+=|.|.|..-=-+++.|||.+
T Consensus 41 aLYq~DAA~RViArl~kErd~a 62 (70)
T PF08606_consen 41 ALYQHDAACRVIARLLKERDEA 62 (70)
T ss_pred HHHHHhHHHHHHHHHHHhHHHH
Confidence 3334444433333344444443
No 34
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=24.39 E-value=1.6e+02 Score=27.87 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 56 QIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 105 (357)
Q Consensus 56 ~~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 105 (357)
.|..-..+|+..|+||+++-.+++..| ++.|..+.|....+|+.-+..
T Consensus 113 ~ireWre~~~~~i~ekD~~e~~kk~e~--~~~A~k~lddfY~~~~~k~e~ 160 (225)
T PF01086_consen 113 AIREWREERDKRIEEKDAEEEEKKEEI--KEKAKKELDDFYENRNEKKEK 160 (225)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 366667778888888888777776655 446777777777777776665
No 35
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.10 E-value=4.1e+02 Score=21.92 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018368 66 AALQERNLATSEKKAAIAERDMAFLQRDT 94 (357)
Q Consensus 66 ~AI~ERd~AlaERd~Ai~qRD~AiaqRD~ 94 (357)
.+|..+...+..+...+.+|...+.+++.
T Consensus 14 ~~l~~kr~e~~~~~~~~~~~e~~L~~~e~ 42 (126)
T PF13863_consen 14 LALDTKREEIERREEQLKQREEELEKKEQ 42 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 36
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=24.00 E-value=3e+02 Score=24.62 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=25.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018368 70 ERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASL 113 (357)
Q Consensus 70 ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaaL 113 (357)
-|+..+.+=+.++..=+.++.+|...-.+...++.+|..+|+.+
T Consensus 18 ~re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~ 61 (135)
T PRK10947 18 ARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQY 61 (135)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555666666665555556666666666654
No 37
>PF14799 FAM195: FAM195 family
Probab=22.73 E-value=35 Score=28.92 Aligned_cols=12 Identities=33% Similarity=1.024 Sum_probs=10.4
Q ss_pred CCccchhhhhhc
Q 018368 337 HPVDLKDHWAKH 348 (357)
Q Consensus 337 ~p~dlk~~wa~h 348 (357)
.|+||-++|+|+
T Consensus 81 kPfDLE~wW~~R 92 (99)
T PF14799_consen 81 KPFDLEEWWGQR 92 (99)
T ss_pred cccCHHHHHHHH
Confidence 499999999986
No 38
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.40 E-value=5.8e+02 Score=22.99 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018368 84 ERDMAFLQRDTAIAERNNAILERDNAIASL 113 (357)
Q Consensus 84 qRD~AiaqRD~AI~ERD~AI~eRD~aiaaL 113 (357)
+-+.+-++-+..+..=+..+..|++-|.-|
T Consensus 58 ~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL 87 (135)
T TIGR03495 58 RNEEAQAQLRQQLAQARALLAQREQRIERL 87 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555566666655
No 39
>PRK10175 lipoprotein; Provisional
Probab=21.76 E-value=92 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=20.6
Q ss_pred hccccccccccCCCcccCCccccccccccccc
Q 018368 14 ANSTFCASQMDDGGHRENGRHKADQYKAAQGQ 45 (357)
Q Consensus 14 ~~~~~~~~~mdd~g~~engr~k~d~yk~~~~~ 45 (357)
+.-+||.|-|--.+- +.-|..+||.|.+.-
T Consensus 11 ~~lsGCgSi~s~t~p--~~g~g~~yY~Gt~~d 40 (75)
T PRK10175 11 TLLSGCGSIISRTIP--GQGHGNQYYPGVQWD 40 (75)
T ss_pred HHhccchhhhhccCC--CCCCCcccCcchhcc
Confidence 345899999976541 224677899887643
No 40
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=20.83 E-value=6.5e+02 Score=25.02 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=26.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018368 68 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQY 115 (357)
Q Consensus 68 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaaLq~ 115 (357)
+.++....++|+.++.+=++-+..||..|+.=..-+.+-|-++++.-|
T Consensus 62 llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~f 109 (272)
T KOG4552|consen 62 LLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACF 109 (272)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666555555555555555555555555555554433
No 41
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.80 E-value=2.1e+02 Score=29.29 Aligned_cols=14 Identities=36% Similarity=0.188 Sum_probs=6.5
Q ss_pred hhccCCCCCCCCCC
Q 018368 116 RENSLGGNMSSCPP 129 (357)
Q Consensus 116 reNsmng~~~~cpp 129 (357)
|+||...-++-||.
T Consensus 98 ~~nNWPPLP~~~pv 111 (313)
T KOG3088|consen 98 RENNWPPLPSFIPV 111 (313)
T ss_pred cccCCCCCCCCCCc
Confidence 56665433333443
No 42
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.61 E-value=7.6e+02 Score=23.69 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=6.7
Q ss_pred HHHHHHHhhhhhc
Q 018368 106 RDNAIASLQYREN 118 (357)
Q Consensus 106 RD~aiaaLq~reN 118 (357)
++.+++.|+.+-.
T Consensus 114 k~~a~~~L~~~v~ 126 (250)
T PRK14474 114 KQEFFKALQQQTG 126 (250)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
No 43
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.17 E-value=4.7e+02 Score=21.05 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 57 IMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 105 (357)
Q Consensus 57 ~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 105 (357)
..+++..+...+.+++.++.+-..++.+-...+.+--.+..+|=+++..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555444444444444555444443
Done!