Query 018368
Match_columns 357
No_of_seqs 120 out of 131
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 14:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 90.1 0.73 2.5E-05 36.3 6.3 38 68-105 21-58 (72)
2 3nmd_A CGMP dependent protein 87.1 1.5 5.3E-05 34.5 6.4 46 58-103 18-63 (72)
3 3oja_B Anopheles plasmodium-re 80.0 11 0.00037 36.8 10.5 12 113-124 574-585 (597)
4 3gp4_A Transcriptional regulat 70.0 20 0.00067 30.0 8.2 62 51-112 59-127 (142)
5 3he4_A Synzip6; heterodimeric 58.4 23 0.00079 26.2 5.6 24 63-86 30-53 (56)
6 3he4_A Synzip6; heterodimeric 55.8 27 0.00091 25.9 5.6 32 62-93 22-53 (56)
7 3bk6_A PH stomatin; archaea, t 53.0 19 0.00067 30.5 5.2 15 57-71 118-132 (188)
8 3iz5_T 60S ribosomal protein L 52.9 32 0.0011 31.8 6.8 13 124-136 192-204 (209)
9 2pqx_A Ribonuclease I; hydrola 33.9 26 0.0009 31.5 3.2 28 323-350 107-135 (245)
10 3nr7_A DNA-binding protein H-N 32.5 1.9E+02 0.0064 23.0 7.6 31 56-86 28-58 (86)
11 3tla_A MCCF; serine protease, 29.3 11 0.00039 36.4 0.0 12 320-331 278-289 (371)
12 3cl6_A PUUE allantoinase; URIC 27.7 11 0.00038 34.5 -0.4 38 311-348 262-300 (308)
13 4g2c_A DYP2; DYE peroxidase, o 25.8 20 0.00067 36.5 1.0 21 151-171 19-39 (493)
14 1ydx_A Type I restriction enzy 25.2 15 0.00052 33.7 0.0 6 137-142 3-8 (406)
15 2yjp_A Putative ABC transporte 24.3 16 0.00055 31.5 0.0 19 308-328 164-182 (291)
16 4g1u_A Hemin transport system 23.6 17 0.00058 35.3 0.0 6 137-142 3-8 (357)
17 3hh0_A Transcriptional regulat 22.9 1.1E+02 0.0039 25.4 5.0 32 51-82 61-92 (146)
18 1bb1_B Designed, thermostable 20.6 1.6E+02 0.0056 20.1 4.4 18 59-76 5-22 (36)
19 3etc_A AMP-binding protein; ad 20.5 21 0.00073 34.9 0.0 16 311-326 348-363 (580)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.11 E-value=0.73 Score=36.32 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=18.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 68 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE 105 (357)
Q Consensus 68 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e 105 (357)
|.|-..++.+|++.|.+||.-|.+.+..|.|+|..|.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555554
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.13 E-value=1.5 Score=34.46 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018368 58 MTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAI 103 (357)
Q Consensus 58 ~a~~~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI 103 (357)
|--+.|=+.+|.+|++.|.+||.-|.+.+..|.++|.-|.+=...+
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666667777777777777777777777777777776654444
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.99 E-value=11 Score=36.75 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=4.6
Q ss_pred hhhhhccCCCCC
Q 018368 113 LQYRENSLGGNM 124 (357)
Q Consensus 113 Lq~reNsmng~~ 124 (357)
|.-.+..+++|+
T Consensus 574 ~~~l~~~~~~~~ 585 (597)
T 3oja_B 574 VKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHTTC---
T ss_pred HHHHHHHhcCCC
Confidence 333466656553
No 4
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=69.95 E-value=20 Score=29.98 Aligned_cols=62 Identities=10% Similarity=0.147 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 018368 51 QPSMKQIMTIMAERD---AALQERNLATSEKKAAIAERDMAFLQRDTA----IAERNNAILERDNAIAS 112 (357)
Q Consensus 51 ~~~~~~~~a~~~ERd---~AI~ERd~AlaERd~Ai~qRD~AiaqRD~A----I~ERD~AI~eRD~aiaa 112 (357)
..++.+|..++...+ ..+.++...+.++...|.++=..+.+.-.. |..=+..+..+++.+..
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~ 127 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKD 127 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777666554322 234444444444444444433333333222 22223344446665553
No 5
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=58.36 E-value=23 Score=26.22 Aligned_cols=24 Identities=46% Similarity=0.502 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 018368 63 ERDAALQERNLATSEKKAAIAERD 86 (357)
Q Consensus 63 ERd~AI~ERd~AlaERd~Ai~qRD 86 (357)
|-|.|-.|+|-|-.|+|-|-++||
T Consensus 30 endnanlekdianlekdianlerd 53 (56)
T 3he4_A 30 ENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444433333
No 6
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=55.81 E-value=27 Score=25.88 Aligned_cols=32 Identities=41% Similarity=0.359 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018368 62 AERDAALQERNLATSEKKAAIAERDMAFLQRD 93 (357)
Q Consensus 62 ~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD 93 (357)
.|---|-.|-|.|-.|+|-|-++.|.|-.+||
T Consensus 22 lenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 33333444555555555555544444444444
No 7
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=53.04 E-value=19 Score=30.51 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 018368 57 IMTIMAERDAALQER 71 (357)
Q Consensus 57 ~~a~~~ERd~AI~ER 71 (357)
+..++.++..|-.||
T Consensus 118 v~~a~~~~~~Aere~ 132 (188)
T 3bk6_A 118 MQKAMARQAEAERER 132 (188)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 8
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=52.85 E-value=32 Score=31.84 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=0.0
Q ss_pred CCCCCCCCccccC
Q 018368 124 MSSCPPGCQISRG 136 (357)
Q Consensus 124 ~~~cpp~~g~krg 136 (357)
.+||..+||++-|
T Consensus 192 ~~~~~~~~~~~~~ 204 (209)
T 3iz5_T 192 TSGCSSSCGTKEG 204 (209)
T ss_dssp -------------
T ss_pred cCCcccccccccc
Confidence 4579999998754
No 9
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A*
Probab=33.89 E-value=26 Score=31.48 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=15.5
Q ss_pred HHHHHHhhcccCCCCCccchh-hhhhcCC
Q 018368 323 KLLTRLAAEGHDLSHPVDLKD-HWAKHGT 350 (357)
Q Consensus 323 kll~~l~~eg~~~s~p~dlk~-~wa~hgt 350 (357)
.|++.|...=-|+.....|=. -|.||||
T Consensus 107 ~l~~~L~~~WP~~~~~~~fw~hEW~KHGT 135 (245)
T 2pqx_A 107 ETAAKLSEVMPGAGGRSCLERYEYAKHGA 135 (245)
T ss_dssp HHHHHHHHHCTTSSTTTCHHHHHHHHHTG
T ss_pred HHHHHHHHhCCCCCCcchHHHHHhhhCCe
Confidence 355555444334433344544 4899998
No 10
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=32.53 E-value=1.9e+02 Score=22.97 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018368 56 QIMTIMAERDAALQERNLATSEKKAAIAERD 86 (357)
Q Consensus 56 ~~~a~~~ERd~AI~ERd~AlaERd~Ai~qRD 86 (357)
++..++.-=+..|.||..+..+..++.++|.
T Consensus 28 ~Lee~leKl~~VveERree~~~~~~~~~er~ 58 (86)
T 3nr7_A 28 TLEEMLEKLEVVVNERREEESAAAAEVEERT 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444433333
No 11
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=29.27 E-value=11 Score=36.38 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=5.0
Q ss_pred HHHHHHHHHhhc
Q 018368 320 AFNKLLTRLAAE 331 (357)
Q Consensus 320 af~kll~~l~~e 331 (357)
.+.+.|..|...
T Consensus 278 ~idRmL~qL~~a 289 (371)
T 3tla_A 278 TVERLFSMLKLN 289 (371)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 344444444433
No 12
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=27.74 E-value=11 Score=34.45 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=32.4
Q ss_pred ccccccchhHHHHHHHHHhhcc-cCCCCCccchhhhhhc
Q 018368 311 VGGRKMSGSAFNKLLTRLAAEG-HDLSHPVDLKDHWAKH 348 (357)
Q Consensus 311 ~~grkms~~af~kll~~l~~eg-~~~s~p~dlk~~wa~h 348 (357)
+.|+.-...++.+||..|.+.| +-|....+|-+||.++
T Consensus 262 ~~g~~~~~~aL~~~l~~l~~~g~v~~~T~~eia~~~~~~ 300 (308)
T 3cl6_A 262 LIGRPARLAALQRFIEYAKSHEQVWFTRRVDIARHWHAT 300 (308)
T ss_dssp HHTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEecHHHHHHHHHHh
Confidence 4455556789999999999987 9999999999999864
No 13
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=25.80 E-value=20 Score=36.46 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=5.5
Q ss_pred ccchhhhhhccccCCCCCCCC
Q 018368 151 HHVSEAAYSREMHTGDALPVS 171 (357)
Q Consensus 151 ~hisea~~~~~~~~~~asPis 171 (357)
+||-.-+|...|.|.=..|++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ 39 (493)
T 4g2c_A 19 SHMENLYFQGAMPVDLSTTLS 39 (493)
T ss_dssp -------------CCTTSCBC
T ss_pred chhhhhhcccceeeeccCccc
Confidence 377654448888887777754
No 14
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=25.15 E-value=15 Score=33.71 Aligned_cols=6 Identities=50% Similarity=0.849 Sum_probs=0.0
Q ss_pred ccCCCC
Q 018368 137 VKHMHH 142 (357)
Q Consensus 137 ~K~~hH 142 (357)
|||+||
T Consensus 3 ~~~~~~ 8 (406)
T 1ydx_A 3 HHHHHH 8 (406)
T ss_dssp ------
T ss_pred cccccc
Confidence 444443
No 15
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=24.34 E-value=16 Score=31.54 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=10.4
Q ss_pred CccccccccchhHHHHHHHHH
Q 018368 308 HARVGGRKMSGSAFNKLLTRL 328 (357)
Q Consensus 308 ~~r~~grkms~~af~kll~~l 328 (357)
+.|||- ..+..+..+|.++
T Consensus 164 gk~v~~--~~g~~~~~~l~~~ 182 (291)
T 2yjp_A 164 DQTLLV--NKGTTADAFFTKS 182 (291)
T ss_dssp TSEEEE--ETTSHHHHHHHHH
T ss_pred CCEEEE--ecCCcHHHHHHHh
Confidence 445554 3455666666554
No 16
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=23.60 E-value=17 Score=35.25 Aligned_cols=6 Identities=50% Similarity=0.849 Sum_probs=0.0
Q ss_pred ccCCCC
Q 018368 137 VKHMHH 142 (357)
Q Consensus 137 ~K~~hH 142 (357)
|||+||
T Consensus 3 ~~~~~~ 8 (357)
T 4g1u_A 3 HHHHHH 8 (357)
T ss_dssp ------
T ss_pred Cccccc
Confidence 344333
No 17
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.95 E-value=1.1e+02 Score=25.41 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=15.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018368 51 QPSMKQIMTIMAERDAALQERNLATSEKKAAI 82 (357)
Q Consensus 51 ~~~~~~~~a~~~ERd~AI~ERd~AlaERd~Ai 82 (357)
..++.+|..++...+..+.++...+.+..+.+
T Consensus 61 G~sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L 92 (146)
T 3hh0_A 61 GFSLGEIQNIILQRDIETEVFLRQMHFQREVL 92 (146)
T ss_dssp TCCHHHHHHHHTSSEEEHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 45666666666544333344444443333333
No 18
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=20.60 E-value=1.6e+02 Score=20.08 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 018368 59 TIMAERDAALQERNLATS 76 (357)
Q Consensus 59 a~~~ERd~AI~ERd~Ala 76 (357)
+++.|-.+||+|--.|+.
T Consensus 5 aaikeeqaaieeeiqaik 22 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIK 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 19
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=20.47 E-value=21 Score=34.90 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=7.1
Q ss_pred ccccccchhHHHHHHH
Q 018368 311 VGGRKMSGSAFNKLLT 326 (357)
Q Consensus 311 ~~grkms~~af~kll~ 326 (357)
.||..++.....++.+
T Consensus 348 ~gGe~l~~~~~~~~~~ 363 (580)
T 3etc_A 348 VAGEPLNPEVFNRFLE 363 (580)
T ss_dssp ECSSCCCHHHHHHHHH
T ss_pred EccCCCCHHHHHHHHH
Confidence 3444444444444433
Done!